BLASTN 2.11.0+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.



Database: genome.fna
           16 sequences; 12,071,326 total letters



Query= CP014225.1:complement(926804-928359)|16S_rRNA|Escherichia coli str.
K-12 substr. MG1655 strain K-12

Length=1556
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

BK006945.2 TPA_inf: Saccharomyces cerevisiae S288C chromosome XII...  56.3    4e-07
BK006941.2 TPA_inf: Saccharomyces cerevisiae S288C chromosome VII...  31.9    4.5  


>BK006945.2 TPA_inf: Saccharomyces cerevisiae S288C chromosome 
XII, complete sequence
Length=1078177

 Score = 56.3 bits (61),  Expect = 4e-07
 Identities = 38/43 (88%), Gaps = 0/43 (0%)
 Strand=Plus/Minus

Query  1494    AAGTCGTAACAAGGTAACCGTAGGGGAACCTGCGGTTGGATCA  1536
               |||||||||||||||  ||||||| ||||||||||  ||||||
Sbjct  455978  AAGTCGTAACAAGGTTTCCGTAGGTGAACCTGCGGAAGGATCA  455936


 Score = 56.3 bits (61),  Expect = 4e-07
 Identities = 38/43 (88%), Gaps = 0/43 (0%)
 Strand=Plus/Minus

Query  1494    AAGTCGTAACAAGGTAACCGTAGGGGAACCTGCGGTTGGATCA  1536
               |||||||||||||||  ||||||| ||||||||||  ||||||
Sbjct  465115  AAGTCGTAACAAGGTTTCCGTAGGTGAACCTGCGGAAGGATCA  465073


 Score = 40.1 bits (43),  Expect = 0.030
 Identities = 32/39 (82%), Gaps = 0/39 (0%)
 Strand=Plus/Minus

Query  1371    CGGTGAATACGTTCCCGGGCCTTGTACACACCGCCCGTC  1409
               || ||| ||||| || |  | ||||||||||||||||||
Sbjct  456127  CGTTGATTACGTCCCTGCCCTTTGTACACACCGCCCGTC  456089


 Score = 40.1 bits (43),  Expect = 0.030
 Identities = 32/39 (82%), Gaps = 0/39 (0%)
 Strand=Plus/Minus

Query  1371    CGGTGAATACGTTCCCGGGCCTTGTACACACCGCCCGTC  1409
               || ||| ||||| || |  | ||||||||||||||||||
Sbjct  465264  CGTTGATTACGTCCCTGCCCTTTGTACACACCGCCCGTC  465226


 Score = 37.4 bits (40),  Expect = 0.11
 Identities = 20/20 (100%), Gaps = 0/20 (0%)
 Strand=Plus/Minus

Query  517     GTGCCAGCAGCCGCGGTAAT  536
               ||||||||||||||||||||
Sbjct  457171  GTGCCAGCAGCCGCGGTAAT  457152


 Score = 37.4 bits (40),  Expect = 0.11
 Identities = 20/20 (100%), Gaps = 0/20 (0%)
 Strand=Plus/Minus

Query  517     GTGCCAGCAGCCGCGGTAAT  536
               ||||||||||||||||||||
Sbjct  466308  GTGCCAGCAGCCGCGGTAAT  466289


>BK006941.2 TPA_inf: Saccharomyces cerevisiae S288C chromosome 
VII, complete sequence
Length=1090940

 Score = 31.9 bits (34),  Expect = 4.5
 Identities = 36/46 (78%), Gaps = 2/46 (4%)
 Strand=Plus/Minus

Query  9       AAGAGTTTGATCATGGCTCAGATTGAACGCTGGCGGCAGGCCTAAC  54
               |||||||||||||| | | ||| | | | ||| ||||||  |||||
Sbjct  786305  AAGAGTTTGATCATCG-TTAGAGT-ACCCCTGACGGCAGTGCTAAC  786262



Lambda      K        H
   0.634    0.408    0.912 

Gapped
Lambda      K        H
   0.625    0.410    0.780 

Effective search space used: 18456396926


  Database: genome.fna
    Posted date:  Oct 30, 2023  6:51 PM
  Number of letters in database: 12,071,326
  Number of sequences in database:  16



Matrix: blastn matrix 2 -3
Gap Penalties: Existence: 5, Extension: 2