BLASTN 2.11.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: genome.fna 16 sequences; 12,071,326 total letters Query= CP014225.1:2234710-2237641|23S_rRNA|Escherichia coli str. K-12 substr. MG1655 strain K-12 Length=2932 Score E Sequences producing significant alignments: (Bits) Value BK006945.2 TPA_inf: Saccharomyces cerevisiae S288C chromosome XII... 74.3 3e-12 BK006949.2 TPA_inf: Saccharomyces cerevisiae S288C chromosome XVI... 37.4 0.20 BK006938.2 TPA_inf: Saccharomyces cerevisiae S288C chromosome IV,... 32.8 8.5 BK006946.2 TPA_inf: Saccharomyces cerevisiae S288C chromosome XII... 31.9 8.5 BK006940.2 TPA_inf: Saccharomyces cerevisiae S288C chromosome VI,... 31.9 8.5 BK006936.2 TPA_inf: Saccharomyces cerevisiae S288C chromosome II,... 31.9 8.5 >BK006945.2 TPA_inf: Saccharomyces cerevisiae S288C chromosome XII, complete sequence Length=1078177 Score = 74.3 bits (81), Expect = 3e-12 Identities = 122/175 (70%), Gaps = 6/175 (3%) Strand=Plus/Minus Query 2442 AAAAGGTACTCCGGGGATAACAGGCTGATACCGCCCAAGAGTTCATATCGACGGCGGTGT 2501 ||||| ||| | |||||||| |||| | | |||| ||||||| |||| | | | Sbjct 452381 AAAAGTTACCACAGGGATAACTGGCTTGTGGCAGTCAAGCGTTCATAGCGACATTGCTTT 452322 Query 2502 TTGGCACCTCGATGTCGGCTCATCACATCCT---GGGGCTGAAGTAGGTCCCAAGGGTAT 2558 ||| | ||||||||||||| || ||| | | || ||| | ||| ||| || Sbjct 452321 TTGATTCTTCGATGTCGGCTCTTCCTATCATACCGAAGCAGAATTCGGT---AAGCGTTG 452265 Query 2559 GGCTGTTCGCCATTTAAAGTGGTACGCGAGCTGGGTTTAGAACGTCGTGAGACAG 2613 | ||||| || ||| || ||| |||||||||||||| ||||||||||||| Sbjct 452264 GATTGTTCACCCACTAATAGGGAACGTGAGCTGGGTTTAGACCGTCGTGAGACAG 452210 Score = 74.3 bits (81), Expect = 3e-12 Identities = 122/175 (70%), Gaps = 6/175 (3%) Strand=Plus/Minus Query 2442 AAAAGGTACTCCGGGGATAACAGGCTGATACCGCCCAAGAGTTCATATCGACGGCGGTGT 2501 ||||| ||| | |||||||| |||| | | |||| ||||||| |||| | | | Sbjct 461518 AAAAGTTACCACAGGGATAACTGGCTTGTGGCAGTCAAGCGTTCATAGCGACATTGCTTT 461459 Query 2502 TTGGCACCTCGATGTCGGCTCATCACATCCT---GGGGCTGAAGTAGGTCCCAAGGGTAT 2558 ||| | ||||||||||||| || ||| | | || ||| | ||| ||| || Sbjct 461458 TTGATTCTTCGATGTCGGCTCTTCCTATCATACCGAAGCAGAATTCGGT---AAGCGTTG 461402 Query 2559 GGCTGTTCGCCATTTAAAGTGGTACGCGAGCTGGGTTTAGAACGTCGTGAGACAG 2613 | ||||| || ||| || ||| |||||||||||||| ||||||||||||| Sbjct 461401 GATTGTTCACCCACTAATAGGGAACGTGAGCTGGGTTTAGACCGTCGTGAGACAG 461347 Score = 74.3 bits (81), Expect = 3e-12 Identities = 122/175 (70%), Gaps = 6/175 (3%) Strand=Plus/Minus Query 2442 AAAAGGTACTCCGGGGATAACAGGCTGATACCGCCCAAGAGTTCATATCGACGGCGGTGT 2501 ||||| ||| | |||||||| |||| | | |||| ||||||| |||| | | | Sbjct 490349 AAAAGTTACCACAGGGATAACTGGCTTGTGGCAGTCAAGCGTTCATAGCGACATTGCTTT 490290 Query 2502 TTGGCACCTCGATGTCGGCTCATCACATCCT---GGGGCTGAAGTAGGTCCCAAGGGTAT 2558 ||| | ||||||||||||| || ||| | | || ||| | ||| ||| || Sbjct 490289 TTGATTCTTCGATGTCGGCTCTTCCTATCATACCGAAGCAGAATTCGGT---AAGCGTTG 490233 Query 2559 GGCTGTTCGCCATTTAAAGTGGTACGCGAGCTGGGTTTAGAACGTCGTGAGACAG 2613 | ||||| || ||| || ||| |||||||||||||| ||||||||||||| Sbjct 490232 GATTGTTCACCCACTAATAGGGAACGTGAGCTGGGTTTAGACCGTCGTGAGACAG 490178 Score = 64.4 bits (70), Expect = 1e-09 Identities = 73/97 (75%), Gaps = 1/97 (1%) Strand=Plus/Minus Query 428 TCCAAGGCTAAATACTCCTGACTGACCGATAGTGAACCAGTACCGTGAGGGAAAGGCGAA 487 || || |||||||| | || ||||||||| |||| ||||| |||| |||||| ||| Sbjct 454868 TCTAAAGCTAAATATTGGCGAGAGACCGATAGCGAACAAGTACAGTGATGGAAAGATGAA 454809 Query 488 AAGAACCCCGGCGAGGGGAGTGAAAAAGAACCTGAAA 524 |||||| | || | |||||||||| || ||||| Sbjct 454808 AAGAACTTTGAAAAGAG-AGTGAAAAAGTACGTGAAA 454773 Score = 64.4 bits (70), Expect = 1e-09 Identities = 73/97 (75%), Gaps = 1/97 (1%) Strand=Plus/Minus Query 428 TCCAAGGCTAAATACTCCTGACTGACCGATAGTGAACCAGTACCGTGAGGGAAAGGCGAA 487 || || |||||||| | || ||||||||| |||| ||||| |||| |||||| ||| Sbjct 464005 TCTAAAGCTAAATATTGGCGAGAGACCGATAGCGAACAAGTACAGTGATGGAAAGATGAA 463946 Query 488 AAGAACCCCGGCGAGGGGAGTGAAAAAGAACCTGAAA 524 |||||| | || | |||||||||| || ||||| Sbjct 463945 AAGAACTTTGAAAAGAG-AGTGAAAAAGTACGTGAAA 463910 Score = 60.8 bits (66), Expect = 2e-08 Identities = 69/93 (74%), Gaps = 0/93 (0%) Strand=Plus/Minus Query 1899 AAGCCCCGGTAAACGGCGGCCGTAACTATAACGGTCCTAAGGTAGCGAAATTCCTTGTCG 1958 |||| | |||||||||||| |||||||| || || ||||||||| |||| ||| ||| Sbjct 452950 AAGCGCGGGTAAACGGCGGGAGTAACTATGACTCTCTTAAGGTAGCCAAATGCCTCGTCA 452891 Query 1959 GGTAAGTTCCGACCTGCACGAATGGCGTAATGA 1991 ||| | ||| ||| |||||| ||| || Sbjct 452890 TCTAATTAGTGACGCGCATGAATGGATTAACGA 452858 Score = 60.8 bits (66), Expect = 2e-08 Identities = 69/93 (74%), Gaps = 0/93 (0%) Strand=Plus/Minus Query 1899 AAGCCCCGGTAAACGGCGGCCGTAACTATAACGGTCCTAAGGTAGCGAAATTCCTTGTCG 1958 |||| | |||||||||||| |||||||| || || ||||||||| |||| ||| ||| Sbjct 462087 AAGCGCGGGTAAACGGCGGGAGTAACTATGACTCTCTTAAGGTAGCCAAATGCCTCGTCA 462028 Query 1959 GGTAAGTTCCGACCTGCACGAATGGCGTAATGA 1991 ||| | ||| ||| |||||| ||| || Sbjct 462027 TCTAATTAGTGACGCGCATGAATGGATTAACGA 461995 Score = 57.2 bits (62), Expect = 2e-07 Identities = 61/81 (75%), Gaps = 0/81 (0%) Strand=Plus/Minus Query 185 AGGCGAACCGGGGGAACTGAAACATCTAAGTACCCCGAGGAAAAGAAATCAACCGAGATT 244 ||| | ||| | ||||| || ||| | | || | |||||||||||| |||||| |||| Sbjct 455162 AGGAGTACCCGCTGAACTTAAGCATATCAATAAGCGGAGGAAAAGAAACCAACCGGGATT 455103 Query 245 CCCCCAGTAGCGGCGAGCGAA 265 || |||| ||||||| ||| Sbjct 455102 GCCTTAGTAACGGCGAGTGAA 455082 Score = 57.2 bits (62), Expect = 2e-07 Identities = 61/81 (75%), Gaps = 0/81 (0%) Strand=Plus/Minus Query 185 AGGCGAACCGGGGGAACTGAAACATCTAAGTACCCCGAGGAAAAGAAATCAACCGAGATT 244 ||| | ||| | ||||| || ||| | | || | |||||||||||| |||||| |||| Sbjct 464299 AGGAGTACCCGCTGAACTTAAGCATATCAATAAGCGGAGGAAAAGAAACCAACCGGGATT 464240 Query 245 CCCCCAGTAGCGGCGAGCGAA 265 || |||| ||||||| ||| Sbjct 464239 GCCTTAGTAACGGCGAGTGAA 464219 Score = 42.8 bits (46), Expect = 0.005 Identities = 32/38 (84%), Gaps = 0/38 (0%) Strand=Plus/Minus Query 1674 GGAACTAGGCAAAATGGTGCCGTAACTTCGGGAGAAGG 1711 |||| | |||||||| | |||||||||||||| |||| Sbjct 453284 GGAAGTCGGCAAAATAGATCCGTAACTTCGGGATAAGG 453247 Score = 42.8 bits (46), Expect = 0.005 Identities = 32/38 (84%), Gaps = 0/38 (0%) Strand=Plus/Minus Query 1674 GGAACTAGGCAAAATGGTGCCGTAACTTCGGGAGAAGG 1711 |||| | |||||||| | |||||||||||||| |||| Sbjct 462421 GGAAGTCGGCAAAATAGATCCGTAACTTCGGGATAAGG 462384 Score = 34.6 bits (37), Expect = 2.4 Identities = 33/40 (83%), Gaps = 2/40 (5%) Strand=Plus/Plus Query 1766 TACCAG-CTGGCTGCAACTGTTTAT-TAAAAACACAGCAC 1803 |||||| |||||||||| || |||| |||||| | || || Sbjct 1025543 TACCAGGCTGGCTGCAAATGGTTATATAAAAAAAAAGAAC 1025582 Score = 31.9 bits (34), Expect = 8.5 Identities = 17/17 (100%), Gaps = 0/17 (0%) Strand=Plus/Plus Query 2712 GCCAATGGCACTGCCCG 2728 ||||||||||||||||| Sbjct 387741 GCCAATGGCACTGCCCG 387757 >BK006949.2 TPA_inf: Saccharomyces cerevisiae S288C chromosome XVI, complete sequence Length=948066 Score = 37.4 bits (40), Expect = 0.20 Identities = 20/20 (100%), Gaps = 0/20 (0%) Strand=Plus/Minus Query 2164 ATGGAGCCGACCTTGAAATA 2183 |||||||||||||||||||| Sbjct 343058 ATGGAGCCGACCTTGAAATA 343039 Score = 32.8 bits (35), Expect = 8.5 Identities = 22/25 (88%), Gaps = 0/25 (0%) Strand=Plus/Minus Query 2331 TAGTGCAATGGCATAAGCCAGCTTG 2355 |||||||||||||||| || |||| Sbjct 390552 TAGTGCAATGGCATAATCCCTCTTG 390528 >BK006938.2 TPA_inf: Saccharomyces cerevisiae S288C chromosome IV, complete sequence Length=1531933 Score = 32.8 bits (35), Expect = 8.5 Identities = 19/20 (95%), Gaps = 0/20 (0%) Strand=Plus/Minus Query 1079 AGCAGCCATCATTTAAAGAA 1098 |||||||| ||||||||||| Sbjct 1387056 AGCAGCCACCATTTAAAGAA 1387037 >BK006946.2 TPA_inf: Saccharomyces cerevisiae S288C chromosome XIII, complete sequence Length=924431 Score = 31.9 bits (34), Expect = 8.5 Identities = 17/17 (100%), Gaps = 0/17 (0%) Strand=Plus/Plus Query 1214 GCCTGTGAAGGTGTGCT 1230 ||||||||||||||||| Sbjct 628450 GCCTGTGAAGGTGTGCT 628466 >BK006940.2 TPA_inf: Saccharomyces cerevisiae S288C chromosome VI, complete sequence Length=270161 Score = 31.9 bits (34), Expect = 8.5 Identities = 20/22 (91%), Gaps = 0/22 (0%) Strand=Plus/Plus Query 1928 AACGGTCCTAAGGTAGCGAAAT 1949 ||||||||||||||| | |||| Sbjct 255326 AACGGTCCTAAGGTACCAAAAT 255347 >BK006936.2 TPA_inf: Saccharomyces cerevisiae S288C chromosome II, complete sequence Length=813184 Score = 31.9 bits (34), Expect = 8.5 Identities = 17/17 (100%), Gaps = 0/17 (0%) Strand=Plus/Plus Query 311 CGTCTGGAAAGGCGTGC 327 ||||||||||||||||| Sbjct 111128 CGTCTGGAAAGGCGTGC 111144 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 35065947070 Database: genome.fna Posted date: Oct 30, 2023 6:51 PM Number of letters in database: 12,071,326 Number of sequences in database: 16 Matrix: blastn matrix 2 -3 Gap Penalties: Existence: 5, Extension: 2