RID: AMHHESNW016 Job Title:R1AB_CVHOC P0C6X6 Host translation inhibitor... Program: BLASTP Query: R1AB_CVHOC P0C6X6 Host translation inhibitor nsp1 ID: lcl|Query_65978(amino acid) Length: 246 Database: swissprot Non-redundant UniProtKB/SwissProt sequences Sequences producing significant alignments: Scientific Common Max Total Query E Per. Acc. Description Name Name Taxid Score Score cover Value Ident Len Accession RecName: Full=Replicase polyprotein 1a; Short=pp1a; AltName:... Human corona... NA 31631 531 531 100% 4e-173 100.00 4383 P0C6U7.1 RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName:... Human corona... NA 31631 531 531 100% 5e-173 100.00 7095 P0C6X6.1 RecName: Full=Replicase polyprotein 1a; Short=pp1a; AltName:... Bovine respi... NA 233264 493 493 100% 9e-160 93.50 4383 P0C6T9.1 RecName: Full=Replicase polyprotein 1a; Short=pp1a; AltName:... Bovine enter... NA 233262 493 493 100% 9e-160 93.50 4383 P0C6T8.1 RecName: Full=Replicase polyprotein 1a; Short=pp1a; AltName:... Bovine coron... NA 11132 493 493 100% 1e-159 93.50 4383 P0C6U0.1 RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName:... Bovine enter... NA 233262 493 493 100% 2e-159 93.50 7094 P0C6W7.1 RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName:... Bovine respi... NA 233264 493 493 100% 2e-159 93.50 7094 P0C6W8.1 RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName:... Bovine coron... NA 11132 493 493 100% 2e-159 93.50 7094 P0C6W9.1 RecName: Full=Replicase polyprotein 1a; Short=pp1a; AltName:... Bovine coron... NA 11133 485 485 100% 6e-157 92.28 4383 P0C6U1.1 RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName:... Bovine coron... NA 11133 484 484 100% 1e-156 92.28 7059 P0C6X0.1 RecName: Full=Replicase polyprotein 1a; Short=pp1a; AltName:... Murine hepat... NA 76344 237 237 100% 2e-70 47.37 4416 P0C6U9.1 RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName:... Murine hepat... NA 76344 237 237 100% 2e-70 47.37 7124 P0C6X8.1 RecName: Full=Replicase polyprotein 1a; Short=pp1a; AltName:... Murine hepat... NA 11144 234 234 100% 3e-69 47.37 4474 P0C6V1.1 RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName:... Murine hepat... NA 11144 234 234 100% 3e-69 47.37 7180 P0C6Y0.1 RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName:... Murine hepat... NA 11142 231 231 100% 2e-68 46.56 7176 P0C6X9.1 RecName: Full=Replicase polyprotein 1a; Short=pp1a; AltName:... Murine hepat... NA 11142 231 231 100% 2e-68 46.56 4468 P0C6V0.1 RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName:... Murine hepat... NA 11143 196 196 89% 7e-59 44.34 500 P26627.1 RecName: Full=Replicase polyprotein 1a; Short=pp1a; AltName:... Human corona... NA 443239 166 166 100% 9e-46 39.27 4471 P0C6U3.1 RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName:... Human corona... NA 443239 166 166 100% 1e-45 39.27 7182 P0C6X2.1 RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName:... Human corona... NA 443240 166 166 100% 1e-45 39.27 7152 P0C6X3.1 RecName: Full=Replicase polyprotein 1a; Short=pp1a; AltName:... Human corona... NA 443240 166 166 100% 1e-45 39.27 4441 P0C6U4.1 RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName:... Human corona... NA 443241 163 163 100% 2e-44 38.87 7132 P0C6X4.1 RecName: Full=Replicase polyprotein 1a; Short=pp1a; AltName:... Human corona... NA 443241 162 162 100% 2e-44 38.87 4421 P0C6U5.1 Alignments: >RecName: Full=Replicase polyprotein 1a; Short=pp1a; AltName: Full=ORF1a polyprotein; Contains: RecName: Full=Non-structural protein 1; Short=nsp1; AltName: Full=p28; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p65; Contains: RecName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=PL1-PRO/PL2-PRO; AltName: Full=PL1/PL2; AltName: Full=Papain-like proteinases 1/2; AltName: Full=p210; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; AltName: Full=Peptide HD2; AltName: Full=p44; Contains: RecName: Full=3C-like proteinase; Short=3CL-PRO; Short=3CLp; AltName: Full=M-PRO; AltName: Full=nsp5; AltName: Full=p27; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; AltName: Full=p10; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; AltName: Full=p22; Contains: RecName: Full=Non-structural protein 9; Short=nsp9; AltName: Full=p12; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; AltName: Full=p15; Contains: RecName: Full=Non-structural protein 11; Short=nsp11 [Human coronavirus OC43] Sequence ID: P0C6U7.1 Length: 4383 Range 1: 1 to 246 Score:531 bits(1369), Expect:4e-173, Method:Compositional matrix adjust., Identities:246/246(100%), Positives:246/246(100%), Gaps:0/246(0%) Query 1 MSKINKYGLELHWAPEFPWMFEDAEEKLDNPSSSEVDMICSTTAQKLETDGICPENHVMV 60 MSKINKYGLELHWAPEFPWMFEDAEEKLDNPSSSEVDMICSTTAQKLETDGICPENHVMV Sbjct 1 MSKINKYGLELHWAPEFPWMFEDAEEKLDNPSSSEVDMICSTTAQKLETDGICPENHVMV 60 Query 61 DCRRLLKQECCVQSSLIREIVMNASPYHLEVLLQDALQSREAVLVTTPLGMSLEACYVRG 120 DCRRLLKQECCVQSSLIREIVMNASPYHLEVLLQDALQSREAVLVTTPLGMSLEACYVRG Sbjct 61 DCRRLLKQECCVQSSLIREIVMNASPYHLEVLLQDALQSREAVLVTTPLGMSLEACYVRG 120 Query 121 CNPKGWTMGLFRRRSVCNTGRCTVNKHVAYQLYMIDPAGVCLGAGQFVGWVIPLAFMPVQ 180 CNPKGWTMGLFRRRSVCNTGRCTVNKHVAYQLYMIDPAGVCLGAGQFVGWVIPLAFMPVQ Sbjct 121 CNPKGWTMGLFRRRSVCNTGRCTVNKHVAYQLYMIDPAGVCLGAGQFVGWVIPLAFMPVQ 180 Query 181 SRKFIVPWVMYLRKRGEKGAYNKDHGCGGFGHVYDFKVEDAYDQVHDEPKGKFSKKAYAL 240 SRKFIVPWVMYLRKRGEKGAYNKDHGCGGFGHVYDFKVEDAYDQVHDEPKGKFSKKAYAL Sbjct 181 SRKFIVPWVMYLRKRGEKGAYNKDHGCGGFGHVYDFKVEDAYDQVHDEPKGKFSKKAYAL 240 Query 241 IRGYRG 246 IRGYRG Sbjct 241 IRGYRG 246 >RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Host translation inhibitor nsp1; Short=nsp1; AltName: Full=p28; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p65; Contains: RecName: Full=Papain-like proteinase; Short=PL-PRO; AltName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=p210; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; AltName: Full=Peptide HD2; AltName: Full=p44; Contains: RecName: Full=3C-like proteinase; Short=3CL-PRO; Short=3CLp; AltName: Full=M-PRO; AltName: Full=nsp5; AltName: Full=p27; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; AltName: Full=p10; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; AltName: Full=p22; Contains: RecName: Full=Non-structural protein 9; Short=nsp9; AltName: Full=p12; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; AltName: Full=p15; Contains: RecName: Full=RNA-directed RNA polymerase; Short=Pol; Short=RdRp; AltName: Full=nsp12; AltName: Full=p100; Contains: RecName: Full=Helicase; Short=Hel; AltName: Full=nsp13; AltName: Full=p67; Contains: RecName: Full=Guanine-N7 methyltransferase; Short=ExoN; AltName: Full=nsp14; Contains: RecName: Full=Uridylate-specific endoribonuclease; AltName: Full=NendoU; AltName: Full=nsp15; AltName: Full=p35; Contains: RecName: Full=2'-O-methyltransferase; AltName: Full=nsp16 [Human coronavirus OC43] Sequence ID: P0C6X6.1 Length: 7095 Range 1: 1 to 246 Score:531 bits(1368), Expect:5e-173, Method:Compositional matrix adjust., Identities:246/246(100%), Positives:246/246(100%), Gaps:0/246(0%) Query 1 MSKINKYGLELHWAPEFPWMFEDAEEKLDNPSSSEVDMICSTTAQKLETDGICPENHVMV 60 MSKINKYGLELHWAPEFPWMFEDAEEKLDNPSSSEVDMICSTTAQKLETDGICPENHVMV Sbjct 1 MSKINKYGLELHWAPEFPWMFEDAEEKLDNPSSSEVDMICSTTAQKLETDGICPENHVMV 60 Query 61 DCRRLLKQECCVQSSLIREIVMNASPYHLEVLLQDALQSREAVLVTTPLGMSLEACYVRG 120 DCRRLLKQECCVQSSLIREIVMNASPYHLEVLLQDALQSREAVLVTTPLGMSLEACYVRG Sbjct 61 DCRRLLKQECCVQSSLIREIVMNASPYHLEVLLQDALQSREAVLVTTPLGMSLEACYVRG 120 Query 121 CNPKGWTMGLFRRRSVCNTGRCTVNKHVAYQLYMIDPAGVCLGAGQFVGWVIPLAFMPVQ 180 CNPKGWTMGLFRRRSVCNTGRCTVNKHVAYQLYMIDPAGVCLGAGQFVGWVIPLAFMPVQ Sbjct 121 CNPKGWTMGLFRRRSVCNTGRCTVNKHVAYQLYMIDPAGVCLGAGQFVGWVIPLAFMPVQ 180 Query 181 SRKFIVPWVMYLRKRGEKGAYNKDHGCGGFGHVYDFKVEDAYDQVHDEPKGKFSKKAYAL 240 SRKFIVPWVMYLRKRGEKGAYNKDHGCGGFGHVYDFKVEDAYDQVHDEPKGKFSKKAYAL Sbjct 181 SRKFIVPWVMYLRKRGEKGAYNKDHGCGGFGHVYDFKVEDAYDQVHDEPKGKFSKKAYAL 240 Query 241 IRGYRG 246 IRGYRG Sbjct 241 IRGYRG 246 >RecName: Full=Replicase polyprotein 1a; Short=pp1a; AltName: Full=ORF1a polyprotein; Contains: RecName: Full=Non-structural protein 1; Short=nsp1; AltName: Full=p28; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p65; Contains: RecName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=PL1-PRO/PL2-PRO; AltName: Full=PL1/PL2; AltName: Full=Papain-like proteinases 1/2; AltName: Full=p210; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; AltName: Full=Peptide HD2; AltName: Full=p44; Contains: RecName: Full=3C-like proteinase; Short=3CL-PRO; Short=3CLp; AltName: Full=M-PRO; AltName: Full=nsp5; AltName: Full=p27; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; AltName: Full=p10; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; AltName: Full=p22; Contains: RecName: Full=Non-structural protein 9; Short=nsp9; AltName: Full=p12; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; AltName: Full=p15; Contains: RecName: Full=Non-structural protein 11; Short=nsp11 [Bovine respiratory coronavirus (strain 98TXSF-110-LUN)] Sequence ID: P0C6T9.1 Length: 4383 Range 1: 1 to 246 Score:493 bits(1270), Expect:9e-160, Method:Compositional matrix adjust., Identities:230/246(93%), Positives:233/246(94%), Gaps:0/246(0%) Query 1 MSKINKYGLELHWAPEFPWMFEDAEEKLDNPSSSEVDMICSTTAQKLETDGICPENHVMV 60 MSKINKYGLELHWAPEFPWMFEDAEEKLDNPSSSEVD++CSTTAQKLET GICPENHVMV Sbjct 1 MSKINKYGLELHWAPEFPWMFEDAEEKLDNPSSSEVDIVCSTTAQKLETGGICPENHVMV 60 Query 61 DCRRLLKQECCVQSSLIREIVMNASPYHLEVLLQDALQSREAVLVTTPLGMSLEACYVRG 120 DCRRLLKQECCVQSSLIREIVMN PY LEVLLQDALQSREAVLVT PLGMSLEACYVRG Sbjct 61 DCRRLLKQECCVQSSLIREIVMNTRPYDLEVLLQDALQSREAVLVTPPLGMSLEACYVRG 120 Query 121 CNPKGWTMGLFRRRSVCNTGRCTVNKHVAYQLYMIDPAGVCLGAGQFVGWVIPLAFMPVQ 180 CNP GWTMGLFRRRSVCNTGRC VNKHVAYQLYMIDPAGVC GAGQFVGWVIPLAFMPVQ Sbjct 121 CNPNGWTMGLFRRRSVCNTGRCAVNKHVAYQLYMIDPAGVCFGAGQFVGWVIPLAFMPVQ 180 Query 181 SRKFIVPWVMYLRKRGEKGAYNKDHGCGGFGHVYDFKVEDAYDQVHDEPKGKFSKKAYAL 240 SRKFIVPWVMYLRK GEKGAYNKDH GGF HVY+FKVEDAYD VHDEPKGKFSKKAYAL Sbjct 181 SRKFIVPWVMYLRKCGEKGAYNKDHKRGGFEHVYNFKVEDAYDLVHDEPKGKFSKKAYAL 240 Query 241 IRGYRG 246 IRGYRG Sbjct 241 IRGYRG 246 >RecName: Full=Replicase polyprotein 1a; Short=pp1a; AltName: Full=ORF1a polyprotein; Contains: RecName: Full=Non-structural protein 1; Short=nsp1; AltName: Full=p28; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p65; Contains: RecName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=PL1-PRO/PL2-PRO; AltName: Full=PL1/PL2; AltName: Full=Papain-like proteinases 1/2; AltName: Full=p210; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; AltName: Full=Peptide HD2; AltName: Full=p44; Contains: RecName: Full=3C-like proteinase; Short=3CL-PRO; Short=3CLp; AltName: Full=M-PRO; AltName: Full=nsp5; AltName: Full=p27; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; AltName: Full=p10; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; AltName: Full=p22; Contains: RecName: Full=Non-structural protein 9; Short=nsp9; AltName: Full=p12; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; AltName: Full=p15; Contains: RecName: Full=Non-structural protein 11; Short=nsp11 [Bovine enteric coronavirus (strain 98TXSF-110-ENT)] Sequence ID: P0C6T8.1 Length: 4383 Range 1: 1 to 246 Score:493 bits(1270), Expect:9e-160, Method:Compositional matrix adjust., Identities:230/246(93%), Positives:233/246(94%), Gaps:0/246(0%) Query 1 MSKINKYGLELHWAPEFPWMFEDAEEKLDNPSSSEVDMICSTTAQKLETDGICPENHVMV 60 MSKINKYGLELHWAPEFPWMFEDAEEKLDNPSSSEVD++CSTTAQKLET GICPENHVMV Sbjct 1 MSKINKYGLELHWAPEFPWMFEDAEEKLDNPSSSEVDIVCSTTAQKLETGGICPENHVMV 60 Query 61 DCRRLLKQECCVQSSLIREIVMNASPYHLEVLLQDALQSREAVLVTTPLGMSLEACYVRG 120 DCRRLLKQECCVQSSLIREIVMN PY LEVLLQDALQSREAVLVT PLGMSLEACYVRG Sbjct 61 DCRRLLKQECCVQSSLIREIVMNTRPYDLEVLLQDALQSREAVLVTPPLGMSLEACYVRG 120 Query 121 CNPKGWTMGLFRRRSVCNTGRCTVNKHVAYQLYMIDPAGVCLGAGQFVGWVIPLAFMPVQ 180 CNP GWTMGLFRRRSVCNTGRC VNKHVAYQLYMIDPAGVC GAGQFVGWVIPLAFMPVQ Sbjct 121 CNPNGWTMGLFRRRSVCNTGRCAVNKHVAYQLYMIDPAGVCFGAGQFVGWVIPLAFMPVQ 180 Query 181 SRKFIVPWVMYLRKRGEKGAYNKDHGCGGFGHVYDFKVEDAYDQVHDEPKGKFSKKAYAL 240 SRKFIVPWVMYLRK GEKGAYNKDH GGF HVY+FKVEDAYD VHDEPKGKFSKKAYAL Sbjct 181 SRKFIVPWVMYLRKCGEKGAYNKDHKRGGFEHVYNFKVEDAYDLVHDEPKGKFSKKAYAL 240 Query 241 IRGYRG 246 IRGYRG Sbjct 241 IRGYRG 246 >RecName: Full=Replicase polyprotein 1a; Short=pp1a; AltName: Full=ORF1a polyprotein; Contains: RecName: Full=Non-structural protein 1; Short=nsp1; AltName: Full=p28; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p65; Contains: RecName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=PL1-PRO/PL2-PRO; AltName: Full=PL1/PL2; AltName: Full=Papain-like proteinases 1/2; AltName: Full=p210; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; AltName: Full=Peptide HD2; AltName: Full=p44; Contains: RecName: Full=3C-like proteinase; Short=3CL-PRO; Short=3CLp; AltName: Full=M-PRO; AltName: Full=nsp5; AltName: Full=p27; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; AltName: Full=p10; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; AltName: Full=p22; Contains: RecName: Full=Non-structural protein 9; Short=nsp9; AltName: Full=p12; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; AltName: Full=p15; Contains: RecName: Full=Non-structural protein 11; Short=nsp11 [Bovine coronavirus Mebus] Sequence ID: P0C6U0.1 Length: 4383 Range 1: 1 to 246 Score:493 bits(1268), Expect:1e-159, Method:Compositional matrix adjust., Identities:230/246(93%), Positives:233/246(94%), Gaps:0/246(0%) Query 1 MSKINKYGLELHWAPEFPWMFEDAEEKLDNPSSSEVDMICSTTAQKLETDGICPENHVMV 60 MSKINKYGLELHWAPEFPWMFEDAEEKLDNPSSSEVD++CSTTAQKLET GICPENHVMV Sbjct 1 MSKINKYGLELHWAPEFPWMFEDAEEKLDNPSSSEVDIVCSTTAQKLETGGICPENHVMV 60 Query 61 DCRRLLKQECCVQSSLIREIVMNASPYHLEVLLQDALQSREAVLVTTPLGMSLEACYVRG 120 DCRRLLKQECCVQSSLIREIVMN PY LEVLLQDALQSREAVLVT PLGMSLEACYVRG Sbjct 61 DCRRLLKQECCVQSSLIREIVMNTRPYDLEVLLQDALQSREAVLVTPPLGMSLEACYVRG 120 Query 121 CNPKGWTMGLFRRRSVCNTGRCTVNKHVAYQLYMIDPAGVCLGAGQFVGWVIPLAFMPVQ 180 CNP GWTMGLFRRRSVCNTGRC VNKHVAYQLYMIDPAGVC GAGQFVGWVIPLAFMPVQ Sbjct 121 CNPNGWTMGLFRRRSVCNTGRCAVNKHVAYQLYMIDPAGVCFGAGQFVGWVIPLAFMPVQ 180 Query 181 SRKFIVPWVMYLRKRGEKGAYNKDHGCGGFGHVYDFKVEDAYDQVHDEPKGKFSKKAYAL 240 SRKFIVPWVMYLRK GEKGAYNKDH GGF HVY+FKVEDAYD VHDEPKGKFSKKAYAL Sbjct 181 SRKFIVPWVMYLRKCGEKGAYNKDHKRGGFEHVYNFKVEDAYDLVHDEPKGKFSKKAYAL 240 Query 241 IRGYRG 246 IRGYRG Sbjct 241 IRGYRG 246 >RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Host translation inhibitor nsp1; Short=nsp1; AltName: Full=p28; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p65; Contains: RecName: Full=Papain-like proteinase; Short=PL-PRO; AltName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=p210; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; AltName: Full=Peptide HD2; AltName: Full=p44; Contains: RecName: Full=3C-like proteinase; Short=3CL-PRO; Short=3CLp; AltName: Full=M-PRO; AltName: Full=nsp5; AltName: Full=p27; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; AltName: Full=p10; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; AltName: Full=p22; Contains: RecName: Full=Non-structural protein 9; Short=nsp9; AltName: Full=p12; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; AltName: Full=p15; Contains: RecName: Full=RNA-directed RNA polymerase; Short=Pol; Short=RdRp; AltName: Full=nsp12; AltName: Full=p100; Contains: RecName: Full=Helicase; Short=Hel; AltName: Full=nsp13; AltName: Full=p67; Contains: RecName: Full=Guanine-N7 methyltransferase; Short=ExoN; AltName: Full=nsp14; Contains: RecName: Full=Uridylate-specific endoribonuclease; AltName: Full=NendoU; AltName: Full=nsp15; AltName: Full=p35; Contains: RecName: Full=2'-O-methyltransferase; AltName: Full=nsp16 [Bovine enteric coronavirus (strain 98TXSF-110-ENT)] Sequence ID: P0C6W7.1 Length: 7094 Range 1: 1 to 246 Score:493 bits(1268), Expect:2e-159, Method:Compositional matrix adjust., Identities:230/246(93%), Positives:233/246(94%), Gaps:0/246(0%) Query 1 MSKINKYGLELHWAPEFPWMFEDAEEKLDNPSSSEVDMICSTTAQKLETDGICPENHVMV 60 MSKINKYGLELHWAPEFPWMFEDAEEKLDNPSSSEVD++CSTTAQKLET GICPENHVMV Sbjct 1 MSKINKYGLELHWAPEFPWMFEDAEEKLDNPSSSEVDIVCSTTAQKLETGGICPENHVMV 60 Query 61 DCRRLLKQECCVQSSLIREIVMNASPYHLEVLLQDALQSREAVLVTTPLGMSLEACYVRG 120 DCRRLLKQECCVQSSLIREIVMN PY LEVLLQDALQSREAVLVT PLGMSLEACYVRG Sbjct 61 DCRRLLKQECCVQSSLIREIVMNTRPYDLEVLLQDALQSREAVLVTPPLGMSLEACYVRG 120 Query 121 CNPKGWTMGLFRRRSVCNTGRCTVNKHVAYQLYMIDPAGVCLGAGQFVGWVIPLAFMPVQ 180 CNP GWTMGLFRRRSVCNTGRC VNKHVAYQLYMIDPAGVC GAGQFVGWVIPLAFMPVQ Sbjct 121 CNPNGWTMGLFRRRSVCNTGRCAVNKHVAYQLYMIDPAGVCFGAGQFVGWVIPLAFMPVQ 180 Query 181 SRKFIVPWVMYLRKRGEKGAYNKDHGCGGFGHVYDFKVEDAYDQVHDEPKGKFSKKAYAL 240 SRKFIVPWVMYLRK GEKGAYNKDH GGF HVY+FKVEDAYD VHDEPKGKFSKKAYAL Sbjct 181 SRKFIVPWVMYLRKCGEKGAYNKDHKRGGFEHVYNFKVEDAYDLVHDEPKGKFSKKAYAL 240 Query 241 IRGYRG 246 IRGYRG Sbjct 241 IRGYRG 246 >RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Host translation inhibitor nsp1; Short=nsp1; AltName: Full=p28; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p65; Contains: RecName: Full=Papain-like proteinase; Short=PL-PRO; AltName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=p210; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; AltName: Full=Peptide HD2; AltName: Full=p44; Contains: RecName: Full=3C-like proteinase; Short=3CL-PRO; Short=3CLp; AltName: Full=M-PRO; AltName: Full=nsp5; AltName: Full=p27; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; AltName: Full=p10; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; AltName: Full=p22; Contains: RecName: Full=Non-structural protein 9; Short=nsp9; AltName: Full=p12; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; AltName: Full=p15; Contains: RecName: Full=RNA-directed RNA polymerase; Short=Pol; Short=RdRp; AltName: Full=nsp12; AltName: Full=p100; Contains: RecName: Full=Helicase; Short=Hel; AltName: Full=nsp13; AltName: Full=p67; Contains: RecName: Full=Guanine-N7 methyltransferase; Short=ExoN; AltName: Full=nsp14; Contains: RecName: Full=Uridylate-specific endoribonuclease; AltName: Full=NendoU; AltName: Full=nsp15; AltName: Full=p35; Contains: RecName: Full=2'-O-methyltransferase; AltName: Full=nsp16 [Bovine respiratory coronavirus (strain 98TXSF-110-LUN)] Sequence ID: P0C6W8.1 Length: 7094 Range 1: 1 to 246 Score:493 bits(1268), Expect:2e-159, Method:Compositional matrix adjust., Identities:230/246(93%), Positives:233/246(94%), Gaps:0/246(0%) Query 1 MSKINKYGLELHWAPEFPWMFEDAEEKLDNPSSSEVDMICSTTAQKLETDGICPENHVMV 60 MSKINKYGLELHWAPEFPWMFEDAEEKLDNPSSSEVD++CSTTAQKLET GICPENHVMV Sbjct 1 MSKINKYGLELHWAPEFPWMFEDAEEKLDNPSSSEVDIVCSTTAQKLETGGICPENHVMV 60 Query 61 DCRRLLKQECCVQSSLIREIVMNASPYHLEVLLQDALQSREAVLVTTPLGMSLEACYVRG 120 DCRRLLKQECCVQSSLIREIVMN PY LEVLLQDALQSREAVLVT PLGMSLEACYVRG Sbjct 61 DCRRLLKQECCVQSSLIREIVMNTRPYDLEVLLQDALQSREAVLVTPPLGMSLEACYVRG 120 Query 121 CNPKGWTMGLFRRRSVCNTGRCTVNKHVAYQLYMIDPAGVCLGAGQFVGWVIPLAFMPVQ 180 CNP GWTMGLFRRRSVCNTGRC VNKHVAYQLYMIDPAGVC GAGQFVGWVIPLAFMPVQ Sbjct 121 CNPNGWTMGLFRRRSVCNTGRCAVNKHVAYQLYMIDPAGVCFGAGQFVGWVIPLAFMPVQ 180 Query 181 SRKFIVPWVMYLRKRGEKGAYNKDHGCGGFGHVYDFKVEDAYDQVHDEPKGKFSKKAYAL 240 SRKFIVPWVMYLRK GEKGAYNKDH GGF HVY+FKVEDAYD VHDEPKGKFSKKAYAL Sbjct 181 SRKFIVPWVMYLRKCGEKGAYNKDHKRGGFEHVYNFKVEDAYDLVHDEPKGKFSKKAYAL 240 Query 241 IRGYRG 246 IRGYRG Sbjct 241 IRGYRG 246 >RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Host translation inhibitor nsp1; Short=nsp1; AltName: Full=p28; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p65; Contains: RecName: Full=Papain-like proteinase; Short=PL-PRO; AltName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=p210; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; AltName: Full=Peptide HD2; AltName: Full=p44; Contains: RecName: Full=3C-like proteinase; Short=3CL-PRO; Short=3CLp; AltName: Full=M-PRO; AltName: Full=nsp5; AltName: Full=p27; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; AltName: Full=p10; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; AltName: Full=p22; Contains: RecName: Full=Non-structural protein 9; Short=nsp9; AltName: Full=p12; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; AltName: Full=p15; Contains: RecName: Full=RNA-directed RNA polymerase; Short=Pol; Short=RdRp; AltName: Full=nsp12; AltName: Full=p100; Contains: RecName: Full=Helicase; Short=Hel; AltName: Full=nsp13; AltName: Full=p67; Contains: RecName: Full=Guanine-N7 methyltransferase; Short=ExoN; AltName: Full=nsp14; Contains: RecName: Full=Uridylate-specific endoribonuclease; AltName: Full=NendoU; AltName: Full=nsp15; AltName: Full=p35; Contains: RecName: Full=2'-O-methyltransferase; AltName: Full=nsp16 [Bovine coronavirus Mebus] Sequence ID: P0C6W9.1 Length: 7094 Range 1: 1 to 246 Score:493 bits(1268), Expect:2e-159, Method:Compositional matrix adjust., Identities:230/246(93%), Positives:233/246(94%), Gaps:0/246(0%) Query 1 MSKINKYGLELHWAPEFPWMFEDAEEKLDNPSSSEVDMICSTTAQKLETDGICPENHVMV 60 MSKINKYGLELHWAPEFPWMFEDAEEKLDNPSSSEVD++CSTTAQKLET GICPENHVMV Sbjct 1 MSKINKYGLELHWAPEFPWMFEDAEEKLDNPSSSEVDIVCSTTAQKLETGGICPENHVMV 60 Query 61 DCRRLLKQECCVQSSLIREIVMNASPYHLEVLLQDALQSREAVLVTTPLGMSLEACYVRG 120 DCRRLLKQECCVQSSLIREIVMN PY LEVLLQDALQSREAVLVT PLGMSLEACYVRG Sbjct 61 DCRRLLKQECCVQSSLIREIVMNTRPYDLEVLLQDALQSREAVLVTPPLGMSLEACYVRG 120 Query 121 CNPKGWTMGLFRRRSVCNTGRCTVNKHVAYQLYMIDPAGVCLGAGQFVGWVIPLAFMPVQ 180 CNP GWTMGLFRRRSVCNTGRC VNKHVAYQLYMIDPAGVC GAGQFVGWVIPLAFMPVQ Sbjct 121 CNPNGWTMGLFRRRSVCNTGRCAVNKHVAYQLYMIDPAGVCFGAGQFVGWVIPLAFMPVQ 180 Query 181 SRKFIVPWVMYLRKRGEKGAYNKDHGCGGFGHVYDFKVEDAYDQVHDEPKGKFSKKAYAL 240 SRKFIVPWVMYLRK GEKGAYNKDH GGF HVY+FKVEDAYD VHDEPKGKFSKKAYAL Sbjct 181 SRKFIVPWVMYLRKCGEKGAYNKDHKRGGFEHVYNFKVEDAYDLVHDEPKGKFSKKAYAL 240 Query 241 IRGYRG 246 IRGYRG Sbjct 241 IRGYRG 246 >RecName: Full=Replicase polyprotein 1a; Short=pp1a; AltName: Full=ORF1a polyprotein; Contains: RecName: Full=Non-structural protein 1; Short=nsp1; AltName: Full=p28; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p65; Contains: RecName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=PL1-PRO/PL2-PRO; AltName: Full=PL1/PL2; AltName: Full=Papain-like proteinases 1/2; AltName: Full=p210; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; AltName: Full=Peptide HD2; AltName: Full=p44; Contains: RecName: Full=3C-like proteinase; Short=3CL-PRO; Short=3CLp; AltName: Full=M-PRO; AltName: Full=nsp5; AltName: Full=p27; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; AltName: Full=p10; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; AltName: Full=p22; Contains: RecName: Full=Non-structural protein 9; Short=nsp9; AltName: Full=p12; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; AltName: Full=p15; Contains: RecName: Full=Non-structural protein 11; Short=nsp11 [Bovine coronavirus strain Quebec] Sequence ID: P0C6U1.1 Length: 4383 Range 1: 1 to 246 Score:485 bits(1249), Expect:6e-157, Method:Compositional matrix adjust., Identities:227/246(92%), Positives:231/246(93%), Gaps:0/246(0%) Query 1 MSKINKYGLELHWAPEFPWMFEDAEEKLDNPSSSEVDMICSTTAQKLETDGICPENHVMV 60 MSKINKYGLELHWAPEFPWMFEDAEEKLDNPSSSEVD++CSTTAQKLET GICPENHVMV Sbjct 1 MSKINKYGLELHWAPEFPWMFEDAEEKLDNPSSSEVDIVCSTTAQKLETGGICPENHVMV 60 Query 61 DCRRLLKQECCVQSSLIREIVMNASPYHLEVLLQDALQSREAVLVTTPLGMSLEACYVRG 120 DCRRLLKQECCVQSSLIREIVMN PY LEVLLQDALQSREAVLVT PLGMSLEACYVRG Sbjct 61 DCRRLLKQECCVQSSLIREIVMNTRPYDLEVLLQDALQSREAVLVTPPLGMSLEACYVRG 120 Query 121 CNPKGWTMGLFRRRSVCNTGRCTVNKHVAYQLYMIDPAGVCLGAGQFVGWVIPLAFMPVQ 180 CNP GWTMGLFRRRSVCNTGRC VNKHVAYQLYMIDPAGVC GAGQFVGWVIPLAFMPVQ Sbjct 121 CNPNGWTMGLFRRRSVCNTGRCAVNKHVAYQLYMIDPAGVCFGAGQFVGWVIPLAFMPVQ 180 Query 181 SRKFIVPWVMYLRKRGEKGAYNKDHGCGGFGHVYDFKVEDAYDQVHDEPKGKFSKKAYAL 240 SRKFI PWVMYLRK GEKGAY KD+ GGF HVY+FKVEDAYD VHDEPKGKFSKKAYAL Sbjct 181 SRKFIAPWVMYLRKCGEKGAYIKDYKRGGFEHVYNFKVEDAYDLVHDEPKGKFSKKAYAL 240 Query 241 IRGYRG 246 IRGYRG Sbjct 241 IRGYRG 246 >RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Host translation inhibitor nsp1; Short=nsp1; AltName: Full=p28; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p65; Contains: RecName: Full=Papain-like proteinase; Short=PL-PRO; AltName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=p210; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; AltName: Full=Peptide HD2; AltName: Full=p44; Contains: RecName: Full=3C-like proteinase; Short=3CL-PRO; Short=3CLp; AltName: Full=M-PRO; AltName: Full=nsp5; AltName: Full=p27; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; AltName: Full=p10; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; AltName: Full=p22; Contains: RecName: Full=Non-structural protein 9; Short=nsp9; AltName: Full=p12; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; AltName: Full=p15; Contains: RecName: Full=RNA-directed RNA polymerase; Short=Pol; Short=RdRp; AltName: Full=nsp12; AltName: Full=p100; Contains: RecName: Full=Helicase; Short=Hel; AltName: Full=nsp13; AltName: Full=p67; Contains: RecName: Full=Guanine-N7 methyltransferase; Short=ExoN; AltName: Full=nsp14; Contains: RecName: Full=Uridylate-specific endoribonuclease; AltName: Full=NendoU; AltName: Full=nsp15; AltName: Full=p35; Contains: RecName: Full=2'-O-methyltransferase; AltName: Full=nsp16 [Bovine coronavirus strain Quebec] Sequence ID: P0C6X0.1 Length: 7059 Range 1: 1 to 246 Score:484 bits(1247), Expect:1e-156, Method:Compositional matrix adjust., Identities:227/246(92%), Positives:231/246(93%), Gaps:0/246(0%) Query 1 MSKINKYGLELHWAPEFPWMFEDAEEKLDNPSSSEVDMICSTTAQKLETDGICPENHVMV 60 MSKINKYGLELHWAPEFPWMFEDAEEKLDNPSSSEVD++CSTTAQKLET GICPENHVMV Sbjct 1 MSKINKYGLELHWAPEFPWMFEDAEEKLDNPSSSEVDIVCSTTAQKLETGGICPENHVMV 60 Query 61 DCRRLLKQECCVQSSLIREIVMNASPYHLEVLLQDALQSREAVLVTTPLGMSLEACYVRG 120 DCRRLLKQECCVQSSLIREIVMN PY LEVLLQDALQSREAVLVT PLGMSLEACYVRG Sbjct 61 DCRRLLKQECCVQSSLIREIVMNTRPYDLEVLLQDALQSREAVLVTPPLGMSLEACYVRG 120 Query 121 CNPKGWTMGLFRRRSVCNTGRCTVNKHVAYQLYMIDPAGVCLGAGQFVGWVIPLAFMPVQ 180 CNP GWTMGLFRRRSVCNTGRC VNKHVAYQLYMIDPAGVC GAGQFVGWVIPLAFMPVQ Sbjct 121 CNPNGWTMGLFRRRSVCNTGRCAVNKHVAYQLYMIDPAGVCFGAGQFVGWVIPLAFMPVQ 180 Query 181 SRKFIVPWVMYLRKRGEKGAYNKDHGCGGFGHVYDFKVEDAYDQVHDEPKGKFSKKAYAL 240 SRKFI PWVMYLRK GEKGAY KD+ GGF HVY+FKVEDAYD VHDEPKGKFSKKAYAL Sbjct 181 SRKFIAPWVMYLRKCGEKGAYIKDYKRGGFEHVYNFKVEDAYDLVHDEPKGKFSKKAYAL 240 Query 241 IRGYRG 246 IRGYRG Sbjct 241 IRGYRG 246 >RecName: Full=Replicase polyprotein 1a; Short=pp1a; AltName: Full=ORF1a polyprotein; Contains: RecName: Full=Non-structural protein 1; Short=nsp1; AltName: Full=p28; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p65; Contains: RecName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=PL1-PRO/PL2-PRO; AltName: Full=PL1/PL2; AltName: Full=Papain-like proteinases 1/2; AltName: Full=p210; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; AltName: Full=Peptide HD2; AltName: Full=p44; Contains: RecName: Full=3C-like proteinase; Short=3CL-PRO; Short=3CLp; AltName: Full=M-PRO; AltName: Full=nsp5; AltName: Full=p27; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; AltName: Full=p10; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; AltName: Full=p22; Contains: RecName: Full=Non-structural protein 9; Short=nsp9; AltName: Full=p12; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; AltName: Full=p15; Contains: RecName: Full=Non-structural protein 11; Short=nsp11 [Murine hepatitis virus strain 2] Sequence ID: P0C6U9.1 Length: 4416 Range 1: 1 to 247 Score:237 bits(605), Expect:2e-70, Method:Compositional matrix adjust., Identities:117/247(47%), Positives:158/247(63%), Gaps:1/247(0%) Query 1 MSKINKYGLELHWAPEFPWMFEDAEEKLDNPSSSEVDMICSTTAQKLETDGICPENHVMV 60 M+K+ KYGL WAPEFPWM +A EKL +P SE D C + AQ+ +T G NHV V Sbjct 1 MAKMGKYGLGFKWAPEFPWMLPNASEKLGSPERSEEDGFCPSAAQEPKTKGKTLINHVRV 60 Query 61 DCRRLLKQECCVQSSLIREIVMNASPYHLEVLLQDALQSREAVLVTTPLGMSLEACYVRG 120 DC RL ECCVQS++IR+I ++ P ++E ALQ AVLV +S++A G Sbjct 61 DCSRLPALECCVQSAIIRDIFVDEDPLNVEASTMMALQFGSAVLVKPSKRLSIQAWAKLG 120 Query 121 CNPKGWTMGLFRRRSVCNTGRCTVNKHVAYQLYMIDPAGVCLGAGQFVGWVIPLAFMPVQ 180 PK MGLF+R +CNT C + HVA+QL+ + P GVCLG G+F+GW +P+ +P Sbjct 121 VLPKTPAMGLFKRFCLCNTRECVCDAHVAFQLFTVQPDGVCLGNGRFIGWFVPVTAIPAY 180 Query 181 SRKFIVPWVMYLRKRGEKGAYNKDHGCGGFGH-VYDFKVEDAYDQVHDEPKGKFSKKAYA 239 +++++ PW + LRK G KG+ H VYDF VEDA ++VH PKGK+S+KAYA Sbjct 181 AKQWLQPWSILLRKGGNKGSVTSGHFRRAVTMPVYDFNVEDACEEVHLNPKGKYSRKAYA 240 Query 240 LIRGYRG 246 L++GYRG Sbjct 241 LLKGYRG 247 >RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Host translation inhibitor nsp1; Short=nsp1; AltName: Full=p28; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p65; Contains: RecName: Full=Papain-like proteinase; Short=PL-PRO; AltName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=p210; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; AltName: Full=Peptide HD2; AltName: Full=p44; Contains: RecName: Full=3C-like proteinase; Short=3CL-PRO; Short=3CLp; AltName: Full=M-PRO; AltName: Full=nsp5; AltName: Full=p27; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; AltName: Full=p10; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; AltName: Full=p22; Contains: RecName: Full=Non-structural protein 9; Short=nsp9; AltName: Full=p12; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; AltName: Full=p15; Contains: RecName: Full=RNA-directed RNA polymerase; Short=Pol; Short=RdRp; AltName: Full=nsp12; AltName: Full=p100; Contains: RecName: Full=Helicase; Short=Hel; AltName: Full=nsp13; AltName: Full=p67; Contains: RecName: Full=Guanine-N7 methyltransferase; Short=ExoN; AltName: Full=nsp14; Contains: RecName: Full=Uridylate-specific endoribonuclease; AltName: Full=NendoU; AltName: Full=nsp15; AltName: Full=p35; Contains: RecName: Full=2'-O-methyltransferase; AltName: Full=nsp16 [Murine hepatitis virus strain 2] Sequence ID: P0C6X8.1 Length: 7124 Range 1: 1 to 247 Score:237 bits(605), Expect:2e-70, Method:Compositional matrix adjust., Identities:117/247(47%), Positives:158/247(63%), Gaps:1/247(0%) Query 1 MSKINKYGLELHWAPEFPWMFEDAEEKLDNPSSSEVDMICSTTAQKLETDGICPENHVMV 60 M+K+ KYGL WAPEFPWM +A EKL +P SE D C + AQ+ +T G NHV V Sbjct 1 MAKMGKYGLGFKWAPEFPWMLPNASEKLGSPERSEEDGFCPSAAQEPKTKGKTLINHVRV 60 Query 61 DCRRLLKQECCVQSSLIREIVMNASPYHLEVLLQDALQSREAVLVTTPLGMSLEACYVRG 120 DC RL ECCVQS++IR+I ++ P ++E ALQ AVLV +S++A G Sbjct 61 DCSRLPALECCVQSAIIRDIFVDEDPLNVEASTMMALQFGSAVLVKPSKRLSIQAWAKLG 120 Query 121 CNPKGWTMGLFRRRSVCNTGRCTVNKHVAYQLYMIDPAGVCLGAGQFVGWVIPLAFMPVQ 180 PK MGLF+R +CNT C + HVA+QL+ + P GVCLG G+F+GW +P+ +P Sbjct 121 VLPKTPAMGLFKRFCLCNTRECVCDAHVAFQLFTVQPDGVCLGNGRFIGWFVPVTAIPAY 180 Query 181 SRKFIVPWVMYLRKRGEKGAYNKDHGCGGFGH-VYDFKVEDAYDQVHDEPKGKFSKKAYA 239 +++++ PW + LRK G KG+ H VYDF VEDA ++VH PKGK+S+KAYA Sbjct 181 AKQWLQPWSILLRKGGNKGSVTSGHFRRAVTMPVYDFNVEDACEEVHLNPKGKYSRKAYA 240 Query 240 LIRGYRG 246 L++GYRG Sbjct 241 LLKGYRG 247 >RecName: Full=Replicase polyprotein 1a; Short=pp1a; AltName: Full=ORF1a polyprotein; Contains: RecName: Full=Non-structural protein 1; Short=nsp1; AltName: Full=p28; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p65; Contains: RecName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=PL1-PRO/PL2-PRO; AltName: Full=PL1/PL2; AltName: Full=Papain-like proteinases 1/2; AltName: Full=p210; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; AltName: Full=Peptide HD2; AltName: Full=p44; Contains: RecName: Full=3C-like proteinase; Short=3CL-PRO; Short=3CLp; AltName: Full=M-PRO; AltName: Full=nsp5; AltName: Full=p27; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; AltName: Full=p10; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; AltName: Full=p22; Contains: RecName: Full=Non-structural protein 9; Short=nsp9; AltName: Full=p12; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; AltName: Full=p15; Contains: RecName: Full=Non-structural protein 11; Short=nsp11 [Murine hepatitis virus strain JHM] Sequence ID: P0C6V1.1 Length: 4474 Range 1: 1 to 247 Score:234 bits(596), Expect:3e-69, Method:Compositional matrix adjust., Identities:117/247(47%), Positives:155/247(62%), Gaps:1/247(0%) Query 1 MSKINKYGLELHWAPEFPWMFEDAEEKLDNPSSSEVDMICSTTAQKLETDGICPENHVMV 60 M+K+ KYGL WAPEFPWM +A EKL NP SE D C + AQ+ + G NHV V Sbjct 1 MAKMGKYGLGFKWAPEFPWMLPNASEKLGNPERSEEDGFCPSAAQEPKVKGKTLVNHVRV 60 Query 61 DCRRLLKQECCVQSSLIREIVMNASPYHLEVLLQDALQSREAVLVTTPLGMSLEACYVRG 120 DC RL ECCVQS++IR+I ++ P +E ALQ AVLV +S++A G Sbjct 61 DCSRLPALECCVQSAIIRDIFVDEDPQKVEASTMMALQFGSAVLVKPSKRLSVQAWAKLG 120 Query 121 CNPKGWTMGLFRRRSVCNTGRCTVNKHVAYQLYMIDPAGVCLGAGQFVGWVIPLAFMPVQ 180 PK MGLF+R +CNT C + HVA+QL+ + P GVCLG G+F+GW +P+ +P Sbjct 121 VLPKTPAMGLFKRFCLCNTRECVCDAHVAFQLFTVQPDGVCLGNGRFIGWFVPVTAIPEY 180 Query 181 SRKFIVPWVMYLRKRGEKGAYNKDHGCGGFGH-VYDFKVEDAYDQVHDEPKGKFSKKAYA 239 +++++ PW + LRK G KG+ H VYDF VEDA ++VH P+GK+S KAYA Sbjct 181 AKQWLQPWSILLRKGGNKGSVTSGHFRRAVTMPVYDFNVEDACEEVHLNPRGKYSCKAYA 240 Query 240 LIRGYRG 246 L+RGYRG Sbjct 241 LLRGYRG 247 >RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Host translation inhibitor nsp1; Short=nsp1; AltName: Full=p28; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p65; Contains: RecName: Full=Papain-like proteinase; Short=PL-PRO; AltName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=p210; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; AltName: Full=Peptide HD2; AltName: Full=p44; Contains: RecName: Full=3C-like proteinase; Short=3CL-PRO; Short=3CLp; AltName: Full=M-PRO; AltName: Full=nsp5; AltName: Full=p27; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; AltName: Full=p10; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; AltName: Full=p22; Contains: RecName: Full=Non-structural protein 9; Short=nsp9; AltName: Full=p12; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; AltName: Full=p15; Contains: RecName: Full=RNA-directed RNA polymerase; Short=Pol; Short=RdRp; AltName: Full=nsp12; AltName: Full=p100; Contains: RecName: Full=Helicase; Short=Hel; AltName: Full=nsp13; AltName: Full=p67; Contains: RecName: Full=Guanine-N7 methyltransferase; Short=ExoN; AltName: Full=nsp14; Contains: RecName: Full=Uridylate-specific endoribonuclease; AltName: Full=NendoU; AltName: Full=nsp15; AltName: Full=p35; Contains: RecName: Full=2'-O-methyl transferase; AltName: Full=nsp16 [Murine hepatitis virus strain JHM] Sequence ID: P0C6Y0.1 Length: 7180 Range 1: 1 to 247 Score:234 bits(596), Expect:3e-69, Method:Compositional matrix adjust., Identities:117/247(47%), Positives:155/247(62%), Gaps:1/247(0%) Query 1 MSKINKYGLELHWAPEFPWMFEDAEEKLDNPSSSEVDMICSTTAQKLETDGICPENHVMV 60 M+K+ KYGL WAPEFPWM +A EKL NP SE D C + AQ+ + G NHV V Sbjct 1 MAKMGKYGLGFKWAPEFPWMLPNASEKLGNPERSEEDGFCPSAAQEPKVKGKTLVNHVRV 60 Query 61 DCRRLLKQECCVQSSLIREIVMNASPYHLEVLLQDALQSREAVLVTTPLGMSLEACYVRG 120 DC RL ECCVQS++IR+I ++ P +E ALQ AVLV +S++A G Sbjct 61 DCSRLPALECCVQSAIIRDIFVDEDPQKVEASTMMALQFGSAVLVKPSKRLSVQAWAKLG 120 Query 121 CNPKGWTMGLFRRRSVCNTGRCTVNKHVAYQLYMIDPAGVCLGAGQFVGWVIPLAFMPVQ 180 PK MGLF+R +CNT C + HVA+QL+ + P GVCLG G+F+GW +P+ +P Sbjct 121 VLPKTPAMGLFKRFCLCNTRECVCDAHVAFQLFTVQPDGVCLGNGRFIGWFVPVTAIPEY 180 Query 181 SRKFIVPWVMYLRKRGEKGAYNKDHGCGGFGH-VYDFKVEDAYDQVHDEPKGKFSKKAYA 239 +++++ PW + LRK G KG+ H VYDF VEDA ++VH P+GK+S KAYA Sbjct 181 AKQWLQPWSILLRKGGNKGSVTSGHFRRAVTMPVYDFNVEDACEEVHLNPRGKYSCKAYA 240 Query 240 LIRGYRG 246 L+RGYRG Sbjct 241 LLRGYRG 247 >RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Host translation inhibitor nsp1; Short=nsp1; AltName: Full=p28; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p65; Contains: RecName: Full=Papain-like proteinase; Short=PL-PRO; AltName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=p210; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; AltName: Full=Peptide HD2; AltName: Full=p44; Contains: RecName: Full=3C-like proteinase; Short=3CL-PRO; Short=3CLp; AltName: Full=M-PRO; AltName: Full=nsp5; AltName: Full=p27; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; AltName: Full=p10; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; AltName: Full=p22; Contains: RecName: Full=Non-structural protein 9; Short=nsp9; AltName: Full=p12; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; AltName: Full=p15; Contains: RecName: Full=RNA-directed RNA polymerase; Short=Pol; Short=RdRp; AltName: Full=nsp12; AltName: Full=p100; Contains: RecName: Full=Helicase; Short=Hel; AltName: Full=nsp13; AltName: Full=p67; Contains: RecName: Full=Guanine-N7 methyltransferase; Short=ExoN; AltName: Full=nsp14; Contains: RecName: Full=Uridylate-specific endoribonuclease; AltName: Full=NendoU; AltName: Full=nsp15; AltName: Full=p35; Contains: RecName: Full=2'-O-methyltransferase; AltName: Full=nsp16 [Murine hepatitis virus strain A59] Sequence ID: P0C6X9.1 Length: 7176 Range 1: 1 to 247 Score:231 bits(589), Expect:2e-68, Method:Compositional matrix adjust., Identities:115/247(47%), Positives:155/247(62%), Gaps:1/247(0%) Query 1 MSKINKYGLELHWAPEFPWMFEDAEEKLDNPSSSEVDMICSTTAQKLETDGICPENHVMV 60 M+K+ KYGL WAPEFPWM +A EKL NP SE D C + AQ+ + G NHV V Sbjct 1 MAKMGKYGLGFKWAPEFPWMLPNASEKLGNPERSEEDGFCPSAAQEPKVKGKTLVNHVRV 60 Query 61 DCRRLLKQECCVQSSLIREIVMNASPYHLEVLLQDALQSREAVLVTTPLGMSLEACYVRG 120 +C RL ECCVQS++IR+I ++ P +E ALQ AVLV +S++A G Sbjct 61 NCSRLPALECCVQSAIIRDIFVDEDPQKVEASTMMALQFGSAVLVKPSKRLSIQAWTNLG 120 Query 121 CNPKGWTMGLFRRRSVCNTGRCTVNKHVAYQLYMIDPAGVCLGAGQFVGWVIPLAFMPVQ 180 PK MGLF+R +CNT C+ + HVA+ L+ + P GVCLG G+F+GW +P+ +P Sbjct 121 VLPKTAAMGLFKRVCLCNTRECSCDAHVAFHLFTVQPDGVCLGNGRFIGWFVPVTAIPEY 180 Query 181 SRKFIVPWVMYLRKRGEKGAYNKDHGCGGFGH-VYDFKVEDAYDQVHDEPKGKFSKKAYA 239 +++++ PW + LRK G KG+ H VYDF VEDA ++VH PKGK+S KAYA Sbjct 181 AKQWLQPWSILLRKGGNKGSVTSGHFRRAVTMPVYDFNVEDACEEVHLNPKGKYSCKAYA 240 Query 240 LIRGYRG 246 L++GYRG Sbjct 241 LLKGYRG 247 >RecName: Full=Replicase polyprotein 1a; Short=pp1a; AltName: Full=ORF1a polyprotein; Contains: RecName: Full=Non-structural protein 1; Short=nsp1; AltName: Full=p28; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p65; Contains: RecName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=PL1-PRO/PL2-PRO; AltName: Full=PL1/PL2; AltName: Full=Papain-like proteinases 1/2; AltName: Full=p210; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; AltName: Full=Peptide HD2; AltName: Full=p44; Contains: RecName: Full=3C-like proteinase; Short=3CL-PRO; Short=3CLp; AltName: Full=M-PRO; AltName: Full=nsp5; AltName: Full=p27; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; AltName: Full=p10; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; AltName: Full=p22; Contains: RecName: Full=Non-structural protein 9; Short=nsp9; AltName: Full=p12; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; AltName: Full=p15; Contains: RecName: Full=Non-structural protein 11; Short=nsp11 [Murine hepatitis virus strain A59] Sequence ID: P0C6V0.1 Length: 4468 Range 1: 1 to 247 Score:231 bits(589), Expect:2e-68, Method:Compositional matrix adjust., Identities:115/247(47%), Positives:155/247(62%), Gaps:1/247(0%) Query 1 MSKINKYGLELHWAPEFPWMFEDAEEKLDNPSSSEVDMICSTTAQKLETDGICPENHVMV 60 M+K+ KYGL WAPEFPWM +A EKL NP SE D C + AQ+ + G NHV V Sbjct 1 MAKMGKYGLGFKWAPEFPWMLPNASEKLGNPERSEEDGFCPSAAQEPKVKGKTLVNHVRV 60 Query 61 DCRRLLKQECCVQSSLIREIVMNASPYHLEVLLQDALQSREAVLVTTPLGMSLEACYVRG 120 +C RL ECCVQS++IR+I ++ P +E ALQ AVLV +S++A G Sbjct 61 NCSRLPALECCVQSAIIRDIFVDEDPQKVEASTMMALQFGSAVLVKPSKRLSIQAWTNLG 120 Query 121 CNPKGWTMGLFRRRSVCNTGRCTVNKHVAYQLYMIDPAGVCLGAGQFVGWVIPLAFMPVQ 180 PK MGLF+R +CNT C+ + HVA+ L+ + P GVCLG G+F+GW +P+ +P Sbjct 121 VLPKTAAMGLFKRVCLCNTRECSCDAHVAFHLFTVQPDGVCLGNGRFIGWFVPVTAIPEY 180 Query 181 SRKFIVPWVMYLRKRGEKGAYNKDHGCGGFGH-VYDFKVEDAYDQVHDEPKGKFSKKAYA 239 +++++ PW + LRK G KG+ H VYDF VEDA ++VH PKGK+S KAYA Sbjct 181 AKQWLQPWSILLRKGGNKGSVTSGHFRRAVTMPVYDFNVEDACEEVHLNPKGKYSCKAYA 240 Query 240 LIRGYRG 246 L++GYRG Sbjct 241 LLKGYRG 247 >RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Non-structural protein 1-non-structural protein 3 fusion; Short=nsp1-nsp3 fusion [Murine hepatitis virus strain defective JHM] Sequence ID: P26627.1 Length: 500 Range 1: 1 to 221 Score:196 bits(499), Expect:7e-59, Method:Compositional matrix adjust., Identities:98/221(44%), Positives:131/221(59%), Gaps:1/221(0%) Query 1 MSKINKYGLELHWAPEFPWMFEDAEEKLDNPSSSEVDMICSTTAQKLETDGICPENHVMV 60 M+K+ KYGL WAPEFPWM +A EKL NP SE D C + AQ+ + G NHV V Sbjct 1 MAKMGKYGLGFKWAPEFPWMLPNASEKLGNPERSEEDGFCPSAAQEPKVKGKTLVNHVRV 60 Query 61 DCRRLLKQECCVQSSLIREIVMNASPYHLEVLLQDALQSREAVLVTTPLGMSLEACYVRG 120 DC RL ECCVQS++IR+I ++ P +E ALQ AVLV +S++A G Sbjct 61 DCSRLPALECCVQSAIIRDIFVDEDPQKVEASTMMALQFGSAVLVKPSKRLSVQAWAKLG 120 Query 121 CNPKGWTMGLFRRRSVCNTGRCTVNKHVAYQLYMIDPAGVCLGAGQFVGWVIPLAFMPVQ 180 PK MGLF+R +CNT C + HVA+QL+ + P GVCLG G+F+GW +P+ +P Sbjct 121 VLPKTPAMGLFKRFCLCNTRECVCDAHVAFQLFTVQPDGVCLGNGRFIGWFVPVTAIPEY 180 Query 181 SRKFIVPWVMYLRKRGEKGAYNKDHGCGGFGH-VYDFKVED 220 +++++ PW + LRK G KG+ H VYDF D Sbjct 181 AKQWLQPWSILLRKGGNKGSVTSGHSRRAVTMPVYDFNATD 221 >RecName: Full=Replicase polyprotein 1a; Short=pp1a; AltName: Full=ORF1a polyprotein; Contains: RecName: Full=Non-structural protein 1; Short=nsp1; AltName: Full=p28; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p65; Contains: RecName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=PL1-PRO/PL2-PRO; AltName: Full=PL1/PL2; AltName: Full=Papain-like proteinases 1/2; AltName: Full=p210; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; AltName: Full=Peptide HD2; AltName: Full=p44; Contains: RecName: Full=3C-like proteinase; Short=3CL-PRO; Short=3CLp; AltName: Full=M-PRO; AltName: Full=nsp5; AltName: Full=p27; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; AltName: Full=p10; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; AltName: Full=p22; Contains: RecName: Full=Non-structural protein 9; Short=nsp9; AltName: Full=p12; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; AltName: Full=p15; Contains: RecName: Full=Non-structural protein 11; Short=nsp11 [Human coronavirus HKU1 (isolate N1)] Sequence ID: P0C6U3.1 Length: 4471 Range 1: 1 to 222 Score:166 bits(421), Expect:9e-46, Method:Compositional matrix adjust., Identities:97/247(39%), Positives:137/247(55%), Gaps:26/247(10%) Query 1 MSKINKYGLELHWAPEFPWMFEDAEEKLDNPSSSEVDMICSTTAQKLETDGICPENHVMV 60 M K +KYGL WAPEF W+ DA E+L +P S+ +C +T Q +E+ G +NHV + Sbjct 1 MIKTSKYGLGFKWAPEFRWLLPDAAEELASPMKSDEGGLCPSTGQAMESVGFVYDNHVKI 60 Query 61 DCRRLLKQECCVQSSLIREIVMNASPYHLEVLLQDALQSREAVLVTTPLGMSLEACYVRG 120 DCR +L QE VQS+LIR+I ++ + +EVL + A++S A+L+ +PL + G Sbjct 61 DCRCILGQEWHVQSNLIRDIFVHEDLHVVEVLTKTAVKSGTAILIKSPL-------HSLG 113 Query 121 CNPKGWTMGLFRRRSVCNTGRCTVNKHVAYQLYMIDPAGVCLGAGQFVGWVIPLAFMPVQ 180 PKG+ MGLFR ++V + L M F+GW++P FMP Sbjct 114 GFPKGYVMGLFRSYK--------TKRYVVHHLSM--TTSTTNFGEDFLGWIVPFGFMP-- 161 Query 181 SRKFIVPWVMYLRKRGEKGAYNKDHGCGGFGH-VYDFKVEDAYDQVHDEPKGKFSKKAYA 239 ++ W + R E+ D F YDF VEDAY +VH EPKGK+S+KAYA Sbjct 162 --SYVHKWFQFCRLYIEES----DLIISNFKFDDYDFSVEDAYAEVHAEPKGKYSQKAYA 215 Query 240 LIRGYRG 246 L+R YRG Sbjct 216 LLRQYRG 222 >RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Host translation inhibitor nsp1; Short=nsp1; AltName: Full=p28; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p65; Contains: RecName: Full=Papain-like proteinase; Short=PL-PRO; AltName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=p210; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; AltName: Full=Peptide HD2; AltName: Full=p44; Contains: RecName: Full=3C-like proteinase; Short=3CL-PRO; Short=3CLp; AltName: Full=M-PRO; AltName: Full=nsp5; AltName: Full=p27; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; AltName: Full=p10; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; AltName: Full=p22; Contains: RecName: Full=Non-structural protein 9; Short=nsp9; AltName: Full=p12; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; AltName: Full=p15; Contains: RecName: Full=RNA-directed RNA polymerase; Short=Pol; Short=RdRp; AltName: Full=nsp12; AltName: Full=p100; Contains: RecName: Full=Helicase; Short=Hel; AltName: Full=nsp13; AltName: Full=p67; Contains: RecName: Full=Guanine-N7 methyltransferase; Short=ExoN; AltName: Full=nsp14; Contains: RecName: Full=Uridylate-specific endoribonuclease; AltName: Full=NendoU; AltName: Full=nsp15; AltName: Full=p35; Contains: RecName: Full=2'-O-methyltransferase; AltName: Full=nsp16 [Human coronavirus HKU1 (isolate N1)] Sequence ID: P0C6X2.1 Length: 7182 Range 1: 1 to 222 Score:166 bits(421), Expect:1e-45, Method:Compositional matrix adjust., Identities:97/247(39%), Positives:137/247(55%), Gaps:26/247(10%) Query 1 MSKINKYGLELHWAPEFPWMFEDAEEKLDNPSSSEVDMICSTTAQKLETDGICPENHVMV 60 M K +KYGL WAPEF W+ DA E+L +P S+ +C +T Q +E+ G +NHV + Sbjct 1 MIKTSKYGLGFKWAPEFRWLLPDAAEELASPMKSDEGGLCPSTGQAMESVGFVYDNHVKI 60 Query 61 DCRRLLKQECCVQSSLIREIVMNASPYHLEVLLQDALQSREAVLVTTPLGMSLEACYVRG 120 DCR +L QE VQS+LIR+I ++ + +EVL + A++S A+L+ +PL + G Sbjct 61 DCRCILGQEWHVQSNLIRDIFVHEDLHVVEVLTKTAVKSGTAILIKSPL-------HSLG 113 Query 121 CNPKGWTMGLFRRRSVCNTGRCTVNKHVAYQLYMIDPAGVCLGAGQFVGWVIPLAFMPVQ 180 PKG+ MGLFR ++V + L M F+GW++P FMP Sbjct 114 GFPKGYVMGLFRSYK--------TKRYVVHHLSM--TTSTTNFGEDFLGWIVPFGFMP-- 161 Query 181 SRKFIVPWVMYLRKRGEKGAYNKDHGCGGFGH-VYDFKVEDAYDQVHDEPKGKFSKKAYA 239 ++ W + R E+ D F YDF VEDAY +VH EPKGK+S+KAYA Sbjct 162 --SYVHKWFQFCRLYIEES----DLIISNFKFDDYDFSVEDAYAEVHAEPKGKYSQKAYA 215 Query 240 LIRGYRG 246 L+R YRG Sbjct 216 LLRQYRG 222 >RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Host translation inhibitor nsp1; Short=nsp1; AltName: Full=p28; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p65; Contains: RecName: Full=Papain-like proteinase; Short=PL-PRO; AltName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=p210; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; AltName: Full=Peptide HD2; AltName: Full=p44; Contains: RecName: Full=3C-like proteinase; Short=3CL-PRO; Short=3CLp; AltName: Full=M-PRO; AltName: Full=nsp5; AltName: Full=p27; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; AltName: Full=p10; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; AltName: Full=p22; Contains: RecName: Full=Non-structural protein 9; Short=nsp9; AltName: Full=p12; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; AltName: Full=p15; Contains: RecName: Full=RNA-directed RNA polymerase; Short=Pol; Short=RdRp; AltName: Full=nsp12; AltName: Full=p100; Contains: RecName: Full=Helicase; Short=Hel; AltName: Full=nsp13; AltName: Full=p67; Contains: RecName: Full=Guanine-N7 methyltransferase; Short=ExoN; AltName: Full=nsp14; Contains: RecName: Full=Uridylate-specific endoribonuclease; AltName: Full=NendoU; AltName: Full=nsp15; AltName: Full=p35; Contains: RecName: Full=2'-O-methyltransferase; AltName: Full=nsp16 [Human coronavirus HKU1 (isolate N2)] Sequence ID: P0C6X3.1 Length: 7152 Range 1: 1 to 222 Score:166 bits(420), Expect:1e-45, Method:Compositional matrix adjust., Identities:97/247(39%), Positives:137/247(55%), Gaps:26/247(10%) Query 1 MSKINKYGLELHWAPEFPWMFEDAEEKLDNPSSSEVDMICSTTAQKLETDGICPENHVMV 60 M K +KYGL WAPEF W+ DA E+L +P S+ +C +T Q +E+ G +NHV + Sbjct 1 MIKTSKYGLGFKWAPEFRWLLPDAAEELASPMKSDEGGLCPSTGQAMESVGFVYDNHVKI 60 Query 61 DCRRLLKQECCVQSSLIREIVMNASPYHLEVLLQDALQSREAVLVTTPLGMSLEACYVRG 120 DCR +L QE VQS+LIR+I ++ + +EVL + A++S A+L+ +PL + G Sbjct 61 DCRCILGQEWHVQSNLIRDIFVHEDLHVVEVLTKTAVKSGTAILIKSPL-------HSLG 113 Query 121 CNPKGWTMGLFRRRSVCNTGRCTVNKHVAYQLYMIDPAGVCLGAGQFVGWVIPLAFMPVQ 180 PKG+ MGLFR ++V + L M F+GW++P FMP Sbjct 114 GFPKGYVMGLFRSYK--------TKRYVVHHLSM--TTSTTNFGEDFLGWIVPFGFMP-- 161 Query 181 SRKFIVPWVMYLRKRGEKGAYNKDHGCGGFGH-VYDFKVEDAYDQVHDEPKGKFSKKAYA 239 ++ W + R E+ D F YDF VEDAY +VH EPKGK+S+KAYA Sbjct 162 --SYVHKWFQFCRLYIEES----DLIISNFKFDDYDFSVEDAYAEVHAEPKGKYSQKAYA 215 Query 240 LIRGYRG 246 L+R YRG Sbjct 216 LLRQYRG 222 >RecName: Full=Replicase polyprotein 1a; Short=pp1a; AltName: Full=ORF1a polyprotein; Contains: RecName: Full=Non-structural protein 1; Short=nsp1; AltName: Full=p28; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p65; Contains: RecName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=PL1-PRO/PL2-PRO; AltName: Full=PL1/PL2; AltName: Full=Papain-like proteinases 1/2; AltName: Full=p210; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; AltName: Full=Peptide HD2; AltName: Full=p44; Contains: RecName: Full=3C-like proteinase; Short=3CL-PRO; Short=3CLp; AltName: Full=M-PRO; AltName: Full=nsp5; AltName: Full=p27; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; AltName: Full=p10; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; AltName: Full=p22; Contains: RecName: Full=Non-structural protein 9; Short=nsp9; AltName: Full=p12; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; AltName: Full=p15; Contains: RecName: Full=Non-structural protein 11; Short=nsp11 [Human coronavirus HKU1 (isolate N2)] Sequence ID: P0C6U4.1 Length: 4441 Range 1: 1 to 222 Score:166 bits(420), Expect:1e-45, Method:Compositional matrix adjust., Identities:97/247(39%), Positives:137/247(55%), Gaps:26/247(10%) Query 1 MSKINKYGLELHWAPEFPWMFEDAEEKLDNPSSSEVDMICSTTAQKLETDGICPENHVMV 60 M K +KYGL WAPEF W+ DA E+L +P S+ +C +T Q +E+ G +NHV + Sbjct 1 MIKTSKYGLGFKWAPEFRWLLPDAAEELASPMKSDEGGLCPSTGQAMESVGFVYDNHVKI 60 Query 61 DCRRLLKQECCVQSSLIREIVMNASPYHLEVLLQDALQSREAVLVTTPLGMSLEACYVRG 120 DCR +L QE VQS+LIR+I ++ + +EVL + A++S A+L+ +PL + G Sbjct 61 DCRCILGQEWHVQSNLIRDIFVHEDLHVVEVLTKTAVKSGTAILIKSPL-------HSLG 113 Query 121 CNPKGWTMGLFRRRSVCNTGRCTVNKHVAYQLYMIDPAGVCLGAGQFVGWVIPLAFMPVQ 180 PKG+ MGLFR ++V + L M F+GW++P FMP Sbjct 114 GFPKGYVMGLFRSYK--------TKRYVVHHLSM--TTSTTNFGEDFLGWIVPFGFMP-- 161 Query 181 SRKFIVPWVMYLRKRGEKGAYNKDHGCGGFGH-VYDFKVEDAYDQVHDEPKGKFSKKAYA 239 ++ W + R E+ D F YDF VEDAY +VH EPKGK+S+KAYA Sbjct 162 --SYVHKWFQFCRLYIEES----DLIISNFKFDDYDFSVEDAYAEVHAEPKGKYSQKAYA 215 Query 240 LIRGYRG 246 L+R YRG Sbjct 216 LLRQYRG 222 >RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Host translation inhibitor nsp1; Short=nsp1; AltName: Full=p28; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p65; Contains: RecName: Full=Papain-like proteinase; Short=PL-PRO; AltName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=p210; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; AltName: Full=Peptide HD2; AltName: Full=p44; Contains: RecName: Full=3C-like proteinase; Short=3CL-PRO; Short=3CLp; AltName: Full=M-PRO; AltName: Full=nsp5; AltName: Full=p27; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; AltName: Full=p10; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; AltName: Full=p22; Contains: RecName: Full=Non-structural protein 9; Short=nsp9; AltName: Full=p12; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; AltName: Full=p15; Contains: RecName: Full=RNA-directed RNA polymerase; Short=Pol; Short=RdRp; AltName: Full=nsp12; AltName: Full=p100; Contains: RecName: Full=Helicase; Short=Hel; AltName: Full=nsp13; AltName: Full=p67; Contains: RecName: Full=Guanine-N7 methyltransferase; Short=ExoN; AltName: Full=nsp14; Contains: RecName: Full=Uridylate-specific endoribonuclease; AltName: Full=NendoU; AltName: Full=nsp15; AltName: Full=p35; Contains: RecName: Full=2'-O-methyltransferase; AltName: Full=nsp16 [Human coronavirus HKU1 (isolate N5)] Sequence ID: P0C6X4.1 Length: 7132 Range 1: 1 to 222 Score:163 bits(412), Expect:2e-44, Method:Compositional matrix adjust., Identities:96/247(39%), Positives:135/247(54%), Gaps:26/247(10%) Query 1 MSKINKYGLELHWAPEFPWMFEDAEEKLDNPSSSEVDMICSTTAQKLETDGICPENHVMV 60 M K +KYGL WAPEF W+ DA E+L +P S+ +C +T Q +E+ G +NHV + Sbjct 1 MIKTSKYGLGFKWAPEFRWLLPDAAEELASPMKSDEGGLCPSTGQAMESVGFVYDNHVKI 60 Query 61 DCRRLLKQECCVQSSLIREIVMNASPYHLEVLLQDALQSREAVLVTTPLGMSLEACYVRG 120 DCR +L QE VQS+LIR+I ++ + +EVL + A++S A+L+ +PL + G Sbjct 61 DCRCILGQEWHVQSNLIRDIFVHEDLHVVEVLTKTAVKSGTAILIKSPL-------HSLG 113 Query 121 CNPKGWTMGLFRRRSVCNTGRCTVNKHVAYQLYMIDPAGVCLGAGQFVGWVIPLAFMPVQ 180 PKG+ MGLFR ++V + L M F GW++P FMP Sbjct 114 GFPKGYVMGLFRSYK--------TKRYVVHHLSM--TTSTTNFGEDFFGWIVPFGFMP-- 161 Query 181 SRKFIVPWVMYLRKRGEKGAYNKDHGCGGFGH-VYDFKVEDAYDQVHDEPKGKFSKKAYA 239 ++ W + R E+ D F YDF VE AY +VH EPKGK+S+KAYA Sbjct 162 --SYVHKWFQFCRLYIEES----DLIISNFKFDDYDFSVEAAYAEVHAEPKGKYSQKAYA 215 Query 240 LIRGYRG 246 L+R YRG Sbjct 216 LLRQYRG 222 >RecName: Full=Replicase polyprotein 1a; Short=pp1a; AltName: Full=ORF1a polyprotein; Contains: RecName: Full=Non-structural protein 1; Short=nsp1; AltName: Full=p28; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p65; Contains: RecName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=PL1-PRO/PL2-PRO; AltName: Full=PL1/PL2; AltName: Full=Papain-like proteinases 1/2; AltName: Full=p210; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; AltName: Full=Peptide HD2; AltName: Full=p44; Contains: RecName: Full=3C-like proteinase; Short=3CL-PRO; Short=3CLp; AltName: Full=M-PRO; AltName: Full=nsp5; AltName: Full=p27; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; AltName: Full=p10; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; AltName: Full=p22; Contains: RecName: Full=Non-structural protein 9; Short=nsp9; AltName: Full=p12; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; AltName: Full=p15; Contains: RecName: Full=Non-structural protein 11; Short=nsp11 [Human coronavirus HKU1 (isolate N5)] Sequence ID: P0C6U5.1 Length: 4421 Range 1: 1 to 222 Score:162 bits(411), Expect:2e-44, Method:Compositional matrix adjust., Identities:96/247(39%), Positives:135/247(54%), Gaps:26/247(10%) Query 1 MSKINKYGLELHWAPEFPWMFEDAEEKLDNPSSSEVDMICSTTAQKLETDGICPENHVMV 60 M K +KYGL WAPEF W+ DA E+L +P S+ +C +T Q +E+ G +NHV + Sbjct 1 MIKTSKYGLGFKWAPEFRWLLPDAAEELASPMKSDEGGLCPSTGQAMESVGFVYDNHVKI 60 Query 61 DCRRLLKQECCVQSSLIREIVMNASPYHLEVLLQDALQSREAVLVTTPLGMSLEACYVRG 120 DCR +L QE VQS+LIR+I ++ + +EVL + A++S A+L+ +PL + G Sbjct 61 DCRCILGQEWHVQSNLIRDIFVHEDLHVVEVLTKTAVKSGTAILIKSPL-------HSLG 113 Query 121 CNPKGWTMGLFRRRSVCNTGRCTVNKHVAYQLYMIDPAGVCLGAGQFVGWVIPLAFMPVQ 180 PKG+ MGLFR ++V + L M F GW++P FMP Sbjct 114 GFPKGYVMGLFRSYK--------TKRYVVHHLSM--TTSTTNFGEDFFGWIVPFGFMP-- 161 Query 181 SRKFIVPWVMYLRKRGEKGAYNKDHGCGGFGH-VYDFKVEDAYDQVHDEPKGKFSKKAYA 239 ++ W + R E+ D F YDF VE AY +VH EPKGK+S+KAYA Sbjct 162 --SYVHKWFQFCRLYIEES----DLIISNFKFDDYDFSVEAAYAEVHAEPKGKYSQKAYA 215 Query 240 LIRGYRG 246 L+R YRG Sbjct 216 LLRQYRG 222