TBLASTN 2.2.28+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.



Database: sa_genome.fasta
           14 sequences; 2,212,135 total letters



Query= sp|P25052|TENA_BACSU Thiaminase-2 OS=Bacillus subtilis (strain 168)
GN=tenA PE=1 SV=1

Length=236
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  embl|AL766847|AL766847 Streptococcus agalactiae NEM316 complete...  70.9    6e-15


> embl|AL766847|AL766847 Streptococcus agalactiae NEM316 complete 
genome, segment 5 
Length=167050

 Score = 70.9 bits (172),  Expect = 6e-15, Method: Compositional matrix adjust.
 Identities = 53/213 (25%), Positives = 94/213 (44%), Gaps = 21/213 (10%)
 Frame = +1

Query  3      FSEECRSAAAEWWEGSFVHPFVQGIGDGTLPIDRFKYYVLQDSYYLTHFAKVQSFGAAYA  62
                +E  +  A++ +  +  PF+QGI  G L  D   +Y+  D+ YL  FA + +   A +
Sbjct  97660  LKDEMIAKGAKYIQSIYQDPFIQGIIKGRLDHDVICHYLQADNIYLGKFADIYALCLAKS  97839

Query  63     KDL-----------YTTGRMASHAQGTYEAEMALHRefaelleiseeeRKAFKPSPTAYS  111
               +L           +T  R  +  +G ++A  A      + +             P+A  
Sbjct  97840  DNLRDKQFFLEQIDFTLNRELADGEGPHQALAAYTNRSYQDIIEKGVWY------PSADH  98001

Query  112    YTSHMYRSVLSGNFAEILAALLPCYWLYYEVGEKLLHCDP---GHPIYQKWIGTYGGDWF  168
              Y  HMY        A  LAA+ PC W+Y+++ +K++  +    G+P +  WI  Y  D  
Sbjct  98002  YIKHMYFHFYENGIAGALAAMSPCPWIYHQLAKKIIEENQFLNGNP-FNNWITFYANDTV  98178

Query  169    RQQVEEQINRFDELAENSTEEVRAKMKENFVIS  201
               + +E      D  A+N ++E +A + + FV S
Sbjct  98179  EELMENYFRMMDYYAQNLSKEKQADLVDAFVKS  98277



Lambda      K        H        a         alpha
   0.319    0.134    0.429    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 115594704


  Database: sa_genome.fasta
    Posted date:  Nov 27, 2013  12:05 AM
  Number of letters in database: 2,212,135
  Number of sequences in database:  14



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 13
Window for multiple hits: 40