RID: 0G5PSP4F013 Job Title:Protein Sequence Program: BLASTP Database: swissprot Non-redundant UniProtKB/SwissProt sequences Query #1: Query ID: lcl|Query_7097534 Length: 619 Sequences producing significant alignments: Scientific Common Max Total Query E Per. Acc. Description Name Name Taxid Score Score cover Value Ident Len Accession RecName: Full=Genome polyprotein; Contains: RecName:... West Nile vi... NA 1968826 1298 1298 100% 0.0 100.00 3433 Q9Q6P4.2 RecName: Full=Genome polyprotein; Contains: RecName:... Kunjin virus... NA 11078 1279 1279 100% 0.0 98.06 3433 P14335.1 RecName: Full=Genome polyprotein; Contains: RecName:... West Nile virus NA 11082 1259 1259 100% 0.0 95.80 3430 P06935.2 RecName: Full=Genome polyprotein; Contains: RecName: Full=Caps... Japanese enc... NA 11075 1100 1100 100% 0.0 81.91 3432 P32886.1 RecName: Full=Genome polyprotein; Contains: RecName: Full=Caps... Japanese enc... NA 11073 1098 1098 100% 0.0 81.58 3432 P27395.1 RecName: Full=Genome polyprotein; Contains: RecName: Full=Caps... Japanese enc... NA 11074 1097 1097 100% 0.0 81.42 3432 P19110.1 RecName: Full=Genome polyprotein; Contains: RecName: Full=Caps... Japanese enc... NA 2555554 1096 1096 100% 0.0 81.74 3432 G3FEX6.1 RecName: Full=Genome polyprotein; Contains: RecName:... Murray valle... NA 301478 1082 1082 100% 0.0 80.45 3434 P05769.2 RecName: Full=Genome polyprotein; Contains: RecName:... Usutu virus NA 64286 1072 1072 100% 0.0 79.48 3434 Q5WPU5.1 RecName: Full=Genome polyprotein; Contains: RecName: Full=Caps... Rocio virus NA 64315 980 980 100% 0.0 72.21 3425 Q32ZD4.1 RecName: Full=Genome polyprotein; Contains: RecName: Full=Caps... St. Louis en... NA 11081 974 974 100% 0.0 72.70 3412 P09732.2 RecName: Full=Genome polyprotein; Contains: RecName: Full=Caps... Tembusu virus NA 64293 968 968 100% 0.0 71.08 3425 G1CRV4.1 RecName: Full=Genome polyprotein; Contains: RecName: Full=Caps... Ilheus virus NA 59563 960 960 100% 0.0 70.92 3424 Q32ZD7.1 RecName: Full=Genome polyprotein; Contains: RecName: Full=Caps... Zika virus NA 64320 905 905 100% 0.0 67.96 3419 Q32ZE1.1 RecName: Full=Genome polyprotein; Contains: RecName: Full=Caps... Zika virus Z... NA 2316109 903 903 100% 0.0 67.31 3423 A0A142I5B9.1 RecName: Full=Genome polyprotein; Contains: RecName: Full=Caps... Zika virus Z... NA 2043570 902 902 100% 0.0 67.31 3423 A0A024B7W1.1 RecName: Full=Genome polyprotein; Contains: RecName: Full=Caps... Bussuquara v... NA 64304 896 896 100% 0.0 65.81 3429 Q32ZE0.1 RecName: Full=Genome polyprotein; Contains: RecName: Full=Caps... Dengue virus... NA 408688 865 865 100% 0.0 64.24 3387 Q2YHF0.1 RecName: Full=Genome polyprotein; Contains: RecName: Full=Caps... Dengue virus... NA 408689 865 865 100% 0.0 64.24 3387 Q2YHF2.1 RecName: Full=Genome polyprotein; Contains: RecName: Full=Caps... Dengue virus... NA 408871 863 863 100% 0.0 64.08 3387 P09866.2 RecName: Full=Genome polyprotein; Contains: RecName: Full=Caps... Dengue virus... NA 408687 862 862 100% 0.0 63.92 3387 Q5UCB8.1 RecName: Full=Genome polyprotein; Contains: RecName: Full=Caps... Dengue virus... NA 408686 860 860 100% 0.0 64.08 3387 Q58HT7.1 RecName: Full=Genome polyprotein; Contains: RecName: Full=Caps... Dengue virus... NA 11059 854 854 100% 0.0 63.81 3392 P17763.2 RecName: Full=Genome polyprotein; Contains: RecName:... Dengue virus... NA 408685 852 852 100% 0.0 63.33 3392 P27909.2 RecName: Full=Genome polyprotein; Contains: RecName: Full=Caps... Dengue virus... NA 33741 850 850 100% 0.0 63.49 3391 P33478.2 RecName: Full=Genome polyprotein; Contains: RecName: Full=Caps... Dengue virus... NA 413041 847 847 100% 0.0 63.65 3391 P14337.2 RecName: Full=Genome polyprotein; Contains: RecName: Full=Caps... Dengue virus... NA 11064 847 847 100% 0.0 63.81 3391 P07564.2 RecName: Full=Genome polyprotein; Contains: RecName:... Dengue virus... NA 11067 847 847 100% 0.0 63.65 1683 P27914.1 RecName: Full=Genome polyprotein; Contains: RecName: Full=Caps... Dengue virus... NA 408694 844 844 100% 0.0 63.49 3391 Q9WDA6.1 RecName: Full=Genome polyprotein; Contains: RecName: Full=Caps... Dengue virus... NA 408693 844 844 100% 0.0 63.33 3390 Q5UB51.1 RecName: Full=Genome polyprotein; Contains: RecName: Full=Caps... Dengue virus... NA 31634 844 844 100% 0.0 63.33 3391 P29990.1 RecName: Full=Genome polyprotein; Contains: RecName: Full=Caps... Dengue virus... NA 31635 843 843 100% 0.0 63.17 3391 P29991.1 RecName: Full=Genome polyprotein; Contains: RecName: Full=Caps... Dengue virus... NA 11065 842 842 100% 0.0 63.17 3391 P14340.2 RecName: Full=Genome polyprotein; Contains: RecName: Full=Caps... Dengue virus... NA 408691 842 842 100% 0.0 63.33 3390 Q6YMS3.1 RecName: Full=Genome polyprotein; Contains: RecName: Full=Caps... Dengue virus... NA 408690 841 841 100% 0.0 63.17 3390 Q99D35.1 RecName: Full=Genome polyprotein; Contains: RecName: Full=Caps... Kokobera virus NA 44024 838 838 100% 0.0 61.55 3410 Q32ZD5.1 RecName: Full=Genome polyprotein; Contains: RecName: Full=Caps... Dengue virus... NA 11066 837 837 100% 0.0 63.33 3388 P12823.1 RecName: Full=Genome polyprotein; Contains: RecName: Full=Caps... Dengue virus... NA 408870 836 836 100% 0.0 62.84 3390 P27915.1 RecName: Full=Genome polyprotein; Contains: RecName: Full=Caps... Dengue virus... NA 408692 823 823 100% 0.0 63.33 3390 Q6YMS4.1 RecName: Full=Genome polyprotein; Contains: RecName: Full=Caps... Yellow fever... NA 407135 656 656 100% 0.0 51.85 3411 Q89277.2 RecName: Full=Genome polyprotein; Contains: RecName: Full=Caps... Yellow fever... NA 407137 654 654 100% 0.0 51.85 3411 Q9YRV3.1 RecName: Full=Genome polyprotein; Contains: RecName: Full=Caps... Yellow fever... NA 407134 654 654 100% 0.0 51.85 3411 Q6DV88.1 RecName: Full=Genome polyprotein; Contains: RecName: Full=Caps... Yellow fever... NA 11090 652 652 100% 0.0 51.85 3411 P03314.1 RecName: Full=Genome polyprotein; Contains: RecName: Full=Caps... Yellow fever... NA 407139 651 651 100% 0.0 51.69 3412 Q1X880.1 RecName: Full=Genome polyprotein; Contains: RecName: Full=Caps... Yellow fever... NA 407136 650 650 100% 0.0 51.52 3411 Q6J3P1.1 RecName: Full=Genome polyprotein; Contains: RecName: Full=Caps... Yellow fever... NA 407140 649 649 100% 0.0 51.36 3412 Q1X881.1 RecName: Full=Genome polyprotein; Contains: RecName: Full=Caps... Edge Hill virus NA 64296 649 649 100% 0.0 51.36 3401 C8XPB2.1 RecName: Full=Genome polyprotein; Contains: RecName: Full=Caps... Yellow fever... NA 407138 649 649 100% 0.0 51.36 3411 Q98803.1 RecName: Full=Genome polyprotein; Contains: RecName: Full=Caps... Yellow fever... NA 407141 648 648 100% 0.0 51.52 3412 Q074N0.1 RecName: Full=Genome polyprotein; Contains: RecName: Full=Caps... Wesselsbron ... NA 164416 643 643 100% 0.0 50.88 3405 C5H431.1 RecName: Full=Genome polyprotein; Contains: RecName: Full=Caps... Banzi virus NA 38837 637 637 100% 0.0 51.36 3393 C8XPA8.1 RecName: Full=Genome polyprotein; Contains: RecName:... Tick-borne e... NA 11087 546 546 97% 5e-172 48.18 3412 P07720.3 RecName: Full=Genome polyprotein; Contains: RecName:... Tick-borne e... NA 11088 540 540 97% 4e-170 47.03 3414 P14336.4 RecName: Full=Genome polyprotein; Contains: RecName:... Tick-borne e... NA 70733 539 539 97% 1e-169 47.03 3414 Q01299.1 RecName: Full=Genome polyprotein; Contains: RecName: Full=Caps... Omsk hemorrh... NA 12542 538 538 97% 3e-169 46.53 3414 Q7T6D2.1 RecName: Full=Genome polyprotein; Contains: RecName: Full=Caps... Louping ill ... NA 11086 537 537 97% 8e-169 47.19 3414 P22338.2 RecName: Full=Genome polyprotein; Contains: RecName:... Langat virus... NA 31638 531 531 97% 1e-166 46.82 3414 P29837.2 RecName: Full=Genome polyprotein; Contains: RecName: Full=Caps... Kyasanur For... NA 33743 530 530 97% 2e-166 45.62 3416 D7RF80.1 RecName: Full=Genome polyprotein; Contains: RecName: Full=Caps... Alkhumra hem... NA 172148 530 530 97% 3e-166 45.29 3416 Q91B85.1 RecName: Full=Genome polyprotein; Contains: RecName:... Tick-borne p... NA 39008 511 511 99% 5e-160 44.43 3415 Q04538.1 RecName: Full=Genome polyprotein; Contains: RecName: Full=Caps... Cell fusing ... NA 31658 267 267 95% 9e-76 34.06 3341 P33515.1 RecName: Full=Genome polyprotein; Contains: RecName: Full=Core... Hepatitis C ... NA 356421 57.8 57.8 54% 3e-07 24.01 3019 O92529.3 RecName: Full=Genome polyprotein; Contains: RecName: Full=Core... Hepatitis C ... NA 356391 57.0 57.0 54% 4e-07 23.73 3019 Q5I2N3.3 RecName: Full=Genome polyprotein; Contains: RecName: Full=Core... Hepatitis C ... NA 356420 56.6 56.6 54% 7e-07 24.01 3018 O39927.3 RecName: Full=Genome polyprotein; Contains: RecName: Full=Core... GB virus-B NA 2847087 47.0 47.0 58% 5e-04 22.54 2864 Q69422.1 Alignments: >RecName: Full=Genome polyprotein; Contains: RecName: Full=Peptide 2k; Contains: RecName: Full=Capsid protein C; AltName: Full=Core protein; Contains: RecName: Full=Protein prM; Contains: RecName: Full=Peptide pr; Contains: RecName: Full=Small envelope protein M; AltName: Full=Matrix protein; Contains: RecName: Full=Envelope protein E; Contains: RecName: Full=Non-structural protein 1; Short=NS1; Contains: RecName: Full=Non-structural protein 2A; Short=NS2A; Contains: RecName: Full=Serine protease subunit NS2B; AltName: Full=Flavivirin protease NS2B regulatory subunit; AltName: Full=Non-structural protein 2B; Contains: RecName: Full=Serine protease/Helicase NS3; AltName: Full=Flavivirin protease NS3 catalytic subunit; AltName: Full=Non-structural protein 3; Contains: RecName: Full=Non-structural protein 4A; Short=NS4A; Contains: RecName: Full=Non-structural protein 4B; Short=NS4B; Contains: RecName: Full=RNA-directed RNA polymerase NS5; AltName: Full=NS5 [West Nile virus strain NY-99] Sequence ID: Q9Q6P4.2 Length: 3433 Range 1: 1506 to 2124 Score:1298 bits(3358), Expect:0.0, Method:Compositional matrix adjust., Identities:619/619(100%), Positives:619/619(100%), Gaps:0/619(0%) Query 1 GGVLWDTPSPKEYKKGDTTTGVYRIMTRGLLGSYQAGAGVMVEGVFHTLWHTTKGAALMS 60 GGVLWDTPSPKEYKKGDTTTGVYRIMTRGLLGSYQAGAGVMVEGVFHTLWHTTKGAALMS Sbjct 1506 GGVLWDTPSPKEYKKGDTTTGVYRIMTRGLLGSYQAGAGVMVEGVFHTLWHTTKGAALMS 1565 Query 61 GEGRLDPYWGSVKEDRLCYGGPWKLQHKWNGQDEVQMIVVEPGKNVKNVQTKPGVFKTPE 120 GEGRLDPYWGSVKEDRLCYGGPWKLQHKWNGQDEVQMIVVEPGKNVKNVQTKPGVFKTPE Sbjct 1566 GEGRLDPYWGSVKEDRLCYGGPWKLQHKWNGQDEVQMIVVEPGKNVKNVQTKPGVFKTPE 1625 Query 121 GEIGAVTLDFPTGTSGSPIVDKNGDVIGLYGNGVIMPNGSYISAIVQGERMDEPIPAGFE 180 GEIGAVTLDFPTGTSGSPIVDKNGDVIGLYGNGVIMPNGSYISAIVQGERMDEPIPAGFE Sbjct 1626 GEIGAVTLDFPTGTSGSPIVDKNGDVIGLYGNGVIMPNGSYISAIVQGERMDEPIPAGFE 1685 Query 181 PEMLRKKQITVLDLHPGAGKTRRILPQIIKEAINRRLRTAVLAPTRVVAAEMAEALRGLP 240 PEMLRKKQITVLDLHPGAGKTRRILPQIIKEAINRRLRTAVLAPTRVVAAEMAEALRGLP Sbjct 1686 PEMLRKKQITVLDLHPGAGKTRRILPQIIKEAINRRLRTAVLAPTRVVAAEMAEALRGLP 1745 Query 241 IRYQTSAVPREHNGNEIVDVMCHATLTHRLMSPHRVPNYNLFVMDEAHFTDPASIAARGY 300 IRYQTSAVPREHNGNEIVDVMCHATLTHRLMSPHRVPNYNLFVMDEAHFTDPASIAARGY Sbjct 1746 IRYQTSAVPREHNGNEIVDVMCHATLTHRLMSPHRVPNYNLFVMDEAHFTDPASIAARGY 1805 Query 301 ISTKVELGEAAAIFMTATPPGTSDPFPESNSPISDLQTEIPDRAWNSGYEWITEYTGKTV 360 ISTKVELGEAAAIFMTATPPGTSDPFPESNSPISDLQTEIPDRAWNSGYEWITEYTGKTV Sbjct 1806 ISTKVELGEAAAIFMTATPPGTSDPFPESNSPISDLQTEIPDRAWNSGYEWITEYTGKTV 1865 Query 361 WFVPSVKMGNEIALCLQRAGKKVVQLNRKSYETEYPKCKNDDWDFVITTDISEMGANFKA 420 WFVPSVKMGNEIALCLQRAGKKVVQLNRKSYETEYPKCKNDDWDFVITTDISEMGANFKA Sbjct 1866 WFVPSVKMGNEIALCLQRAGKKVVQLNRKSYETEYPKCKNDDWDFVITTDISEMGANFKA 1925 Query 421 SRVIDSRKSVKPTIITEGEGRVILGEPSAVTAASAAQRRGRIGRNPSQVGDEYCYGGHTN 480 SRVIDSRKSVKPTIITEGEGRVILGEPSAVTAASAAQRRGRIGRNPSQVGDEYCYGGHTN Sbjct 1926 SRVIDSRKSVKPTIITEGEGRVILGEPSAVTAASAAQRRGRIGRNPSQVGDEYCYGGHTN 1985 Query 481 EDDSNFAHWTEARIMLDNINMPNGLIAQFYQPEREKVYTMDGEYRLRGEERKNFLELLRT 540 EDDSNFAHWTEARIMLDNINMPNGLIAQFYQPEREKVYTMDGEYRLRGEERKNFLELLRT Sbjct 1986 EDDSNFAHWTEARIMLDNINMPNGLIAQFYQPEREKVYTMDGEYRLRGEERKNFLELLRT 2045 Query 541 ADLPVWLAYKVAAAGVSYHDRRWCFDGPRTNTILEDNNEVEVITKLGERKILRPRWIDAR 600 ADLPVWLAYKVAAAGVSYHDRRWCFDGPRTNTILEDNNEVEVITKLGERKILRPRWIDAR Sbjct 2046 ADLPVWLAYKVAAAGVSYHDRRWCFDGPRTNTILEDNNEVEVITKLGERKILRPRWIDAR 2105 Query 601 VYSDHQALKAFKDFASGKR 619 VYSDHQALKAFKDFASGKR Sbjct 2106 VYSDHQALKAFKDFASGKR 2124 >RecName: Full=Genome polyprotein; Contains: RecName: Full=Peptide 2k; Contains: RecName: Full=Capsid protein C; AltName: Full=Core protein; Contains: RecName: Full=Protein prM; Contains: RecName: Full=Peptide pr; Contains: RecName: Full=Small envelope protein M; AltName: Full=Matrix protein; Contains: RecName: Full=Envelope protein E; Contains: RecName: Full=Non-structural protein 1; Short=NS1; Contains: RecName: Full=Non-structural protein 2A; Short=NS2A; Contains: RecName: Full=Serine protease subunit NS2B; AltName: Full=Flavivirin protease NS2B regulatory subunit; AltName: Full=Non-structural protein 2B; Contains: RecName: Full=Serine protease/Helicase NS3; AltName: Full=Flavivirin protease NS3 catalytic subunit; AltName: Full=Non-structural protein 3; Contains: RecName: Full=Non-structural protein 4A; Short=NS4A; Contains: RecName: Full=Non-structural protein 4B; Short=NS4B; Contains: RecName: Full=RNA-directed RNA polymerase NS5; AltName: Full=NS5 [Kunjin virus (STRAIN MRM61C)] Sequence ID: P14335.1 Length: 3433 Range 1: 1506 to 2124 Score:1279 bits(3309), Expect:0.0, Method:Compositional matrix adjust., Identities:607/619(98%), Positives:614/619(99%), Gaps:0/619(0%) Query 1 GGVLWDTPSPKEYKKGDTTTGVYRIMTRGLLGSYQAGAGVMVEGVFHTLWHTTKGAALMS 60 GGVLWDTPSPKEYK+GDTTTGVYRIMTRGLLGSYQAGAGVMVEGVFHTLWHTTKGAALMS Sbjct 1506 GGVLWDTPSPKEYKRGDTTTGVYRIMTRGLLGSYQAGAGVMVEGVFHTLWHTTKGAALMS 1565 Query 61 GEGRLDPYWGSVKEDRLCYGGPWKLQHKWNGQDEVQMIVVEPGKNVKNVQTKPGVFKTPE 120 GEGRLDPYWGSVKEDRLCYGGPWKLQHKWNGQDEVQMIVVEPGKNVKNVQTKPGVFKTPE Sbjct 1566 GEGRLDPYWGSVKEDRLCYGGPWKLQHKWNGQDEVQMIVVEPGKNVKNVQTKPGVFKTPE 1625 Query 121 GEIGAVTLDFPTGTSGSPIVDKNGDVIGLYGNGVIMPNGSYISAIVQGERMDEPIPAGFE 180 GEIGAVTLDFPTGTSGSPIVDKNGDVIGLYGNGVIMPNGSYISAIVQGERMDEP+PAGFE Sbjct 1626 GEIGAVTLDFPTGTSGSPIVDKNGDVIGLYGNGVIMPNGSYISAIVQGERMDEPVPAGFE 1685 Query 181 PEMLRKKQITVLDLHPGAGKTRRILPQIIKEAINRRLRTAVLAPTRVVAAEMAEALRGLP 240 PEMLRKKQITVLDLHPGAGKTRRILPQIIKEAINRRLRTAVLAPTRVVAAEMAEALRGLP Sbjct 1686 PEMLRKKQITVLDLHPGAGKTRRILPQIIKEAINRRLRTAVLAPTRVVAAEMAEALRGLP 1745 Query 241 IRYQTSAVPREHNGNEIVDVMCHATLTHRLMSPHRVPNYNLFVMDEAHFTDPASIAARGY 300 IRYQTSAV REHNGNEIVDVMCHATLTHRLMSPHRVPNYNLFVMDEAHFTDPASIAARGY Sbjct 1746 IRYQTSAVAREHNGNEIVDVMCHATLTHRLMSPHRVPNYNLFVMDEAHFTDPASIAARGY 1805 Query 301 ISTKVELGEAAAIFMTATPPGTSDPFPESNSPISDLQTEIPDRAWNSGYEWITEYTGKTV 360 IST+VELGEAAAIFMTATPPGTSDPFPESN+PISDLQTEIPDRAWNSGYEWITEY GKTV Sbjct 1806 ISTRVELGEAAAIFMTATPPGTSDPFPESNAPISDLQTEIPDRAWNSGYEWITEYIGKTV 1865 Query 361 WFVPSVKMGNEIALCLQRAGKKVVQLNRKSYETEYPKCKNDDWDFVITTDISEMGANFKA 420 WFVPSVKMGNEIALCLQRAGKKV+QLNRKSYETEYPKCKNDDWDFV+TTDISEMGANFKA Sbjct 1866 WFVPSVKMGNEIALCLQRAGKKVIQLNRKSYETEYPKCKNDDWDFVVTTDISEMGANFKA 1925 Query 421 SRVIDSRKSVKPTIITEGEGRVILGEPSAVTAASAAQRRGRIGRNPSQVGDEYCYGGHTN 480 SRVIDSRKSVKPTIITEGEGRVILGEPSAVTAASAAQRRGR GRNPSQ GDEYCYGGHTN Sbjct 1926 SRVIDSRKSVKPTIITEGEGRVILGEPSAVTAASAAQRRGRTGRNPSQAGDEYCYGGHTN 1985 Query 481 EDDSNFAHWTEARIMLDNINMPNGLIAQFYQPEREKVYTMDGEYRLRGEERKNFLELLRT 540 EDDSN AHWTEARIMLDNINMPNGLIAQFYQPEREKVYTMDGEYRLRGEERKNFLELLRT Sbjct 1986 EDDSNCAHWTEARIMLDNINMPNGLIAQFYQPEREKVYTMDGEYRLRGEERKNFLELLRT 2045 Query 541 ADLPVWLAYKVAAAGVSYHDRRWCFDGPRTNTILEDNNEVEVITKLGERKILRPRWIDAR 600 ADLPVWLAYKVAAAGVSYHDRRWCFDGPRTNTILEDNNEVEVITKLGERKILRPRWIDAR Sbjct 2046 ADLPVWLAYKVAAAGVSYHDRRWCFDGPRTNTILEDNNEVEVITKLGERKILRPRWIDAR 2105 Query 601 VYSDHQALKAFKDFASGKR 619 VYSDHQALK+FKDFASGKR Sbjct 2106 VYSDHQALKSFKDFASGKR 2124 >RecName: Full=Genome polyprotein; Contains: RecName: Full=Peptide 2k; Contains: RecName: Full=Capsid protein C; AltName: Full=Core protein; Contains: RecName: Full=Protein prM; Contains: RecName: Full=Peptide pr; Contains: RecName: Full=Small envelope protein M; AltName: Full=Matrix protein; Contains: RecName: Full=Envelope protein E; Contains: RecName: Full=Non-structural protein 1; Short=NS1; Contains: RecName: Full=Non-structural protein 2A; Short=NS2A; Contains: RecName: Full=Serine protease subunit NS2B; AltName: Full=Flavivirin protease NS2B regulatory subunit; AltName: Full=Non-structural protein 2B; Contains: RecName: Full=Serine protease/Helicase NS3; AltName: Full=Flavivirin protease NS3 catalytic subunit; AltName: Full=Non-structural protein 3; Contains: RecName: Full=Non-structural protein 4A; Short=NS4A; Contains: RecName: Full=Non-structural protein 4B; Short=NS4B; Contains: RecName: Full=RNA-directed RNA polymerase NS5; AltName: Full=NS5 [West Nile virus] Sequence ID: P06935.2 Length: 3430 Range 1: 1502 to 2120 Score:1259 bits(3259), Expect:0.0, Method:Compositional matrix adjust., Identities:593/619(96%), Positives:611/619(98%), Gaps:0/619(0%) Query 1 GGVLWDTPSPKEYKKGDTTTGVYRIMTRGLLGSYQAGAGVMVEGVFHTLWHTTKGAALMS 60 GGVLWDTPSPKEYKKGDTTTGVYRIMTRGLLGSYQAGAGVMVEGVFHTLWHTTKGAALMS Sbjct 1502 GGVLWDTPSPKEYKKGDTTTGVYRIMTRGLLGSYQAGAGVMVEGVFHTLWHTTKGAALMS 1561 Query 61 GEGRLDPYWGSVKEDRLCYGGPWKLQHKWNGQDEVQMIVVEPGKNVKNVQTKPGVFKTPE 120 GEGRLDPYWGSVKEDRLCYGGPWKLQHKWNG DEVQMIVVEPGKNVKNVQTKPGVFKTPE Sbjct 1562 GEGRLDPYWGSVKEDRLCYGGPWKLQHKWNGHDEVQMIVVEPGKNVKNVQTKPGVFKTPE 1621 Query 121 GEIGAVTLDFPTGTSGSPIVDKNGDVIGLYGNGVIMPNGSYISAIVQGERMDEPIPAGFE 180 GEIGAVTLD+PTGTSGSPIVDKNGDVIGLYGNGVIMPNGSYISAIVQGERM+EP PAGFE Sbjct 1622 GEIGAVTLDYPTGTSGSPIVDKNGDVIGLYGNGVIMPNGSYISAIVQGERMEEPAPAGFE 1681 Query 181 PEMLRKKQITVLDLHPGAGKTRRILPQIIKEAINRRLRTAVLAPTRVVAAEMAEALRGLP 240 PEMLRKKQITVLDLHPGAGKTR+ILPQIIKEAIN+RLRTAVLAPTRVVAAEM+EALRGLP Sbjct 1682 PEMLRKKQITVLDLHPGAGKTRKILPQIIKEAINKRLRTAVLAPTRVVAAEMSEALRGLP 1741 Query 241 IRYQTSAVPREHNGNEIVDVMCHATLTHRLMSPHRVPNYNLFVMDEAHFTDPASIAARGY 300 IRYQTSAV REH+GNEIVDVMCHATLTHRLMSPHRVPNYNLF+MDEAHFTDPASIAARGY Sbjct 1742 IRYQTSAVHREHSGNEIVDVMCHATLTHRLMSPHRVPNYNLFIMDEAHFTDPASIAARGY 1801 Query 301 ISTKVELGEAAAIFMTATPPGTSDPFPESNSPISDLQTEIPDRAWNSGYEWITEYTGKTV 360 I+TKVELGEAAAIFMTATPPGTSDPFPESN+PISD+QTEIPDRAWN+GYEWITEY GKTV Sbjct 1802 IATKVELGEAAAIFMTATPPGTSDPFPESNAPISDMQTEIPDRAWNTGYEWITEYVGKTV 1861 Query 361 WFVPSVKMGNEIALCLQRAGKKVVQLNRKSYETEYPKCKNDDWDFVITTDISEMGANFKA 420 WFVPSVKMGNEIALCLQRAGKKV+QLNRKSYETEYPKCKNDDWDFVITTDISEMGANFKA Sbjct 1862 WFVPSVKMGNEIALCLQRAGKKVIQLNRKSYETEYPKCKNDDWDFVITTDISEMGANFKA 1921 Query 421 SRVIDSRKSVKPTIITEGEGRVILGEPSAVTAASAAQRRGRIGRNPSQVGDEYCYGGHTN 480 SRVIDSRKSVKPTII EG+GRVILGEPSA+TAASAAQRRGRIGRNPSQVGDEYCYGGHTN Sbjct 1922 SRVIDSRKSVKPTIIEEGDGRVILGEPSAITAASAAQRRGRIGRNPSQVGDEYCYGGHTN 1981 Query 481 EDDSNFAHWTEARIMLDNINMPNGLIAQFYQPEREKVYTMDGEYRLRGEERKNFLELLRT 540 EDDSNFAHWTEARIMLDNINMPNGL+AQ YQPEREKVYTMDGEYRLRGEERKNFLE LRT Sbjct 1982 EDDSNFAHWTEARIMLDNINMPNGLVAQLYQPEREKVYTMDGEYRLRGEERKNFLEFLRT 2041 Query 541 ADLPVWLAYKVAAAGVSYHDRRWCFDGPRTNTILEDNNEVEVITKLGERKILRPRWIDAR 600 ADLPVWLAYKVAAAG+SYHDR+WCFDGPRTNTILEDNNEVEVITKLGERKILRPRW DAR Sbjct 2042 ADLPVWLAYKVAAAGISYHDRKWCFDGPRTNTILEDNNEVEVITKLGERKILRPRWADAR 2101 Query 601 VYSDHQALKAFKDFASGKR 619 VYSDHQALK+FKDFASGKR Sbjct 2102 VYSDHQALKSFKDFASGKR 2120 >RecName: Full=Genome polyprotein; Contains: RecName: Full=Capsid protein C; AltName: Full=Core protein; Contains: RecName: Full=Protein prM; Contains: RecName: Full=Peptide pr; Contains: RecName: Full=Small envelope protein M; AltName: Full=Matrix protein; Contains: RecName: Full=Envelope protein E; Contains: RecName: Full=Non-structural protein 1; Short=NS1; Contains: RecName: Full=Non-structural protein 2A; Short=NS2A; Contains: RecName: Full=Serine protease subunit NS2B; AltName: Full=Flavivirin protease NS2B regulatory subunit; AltName: Full=Non-structural protein 2B; Contains: RecName: Full=Serine protease NS3; AltName: Full=Flavivirin protease NS3 catalytic subunit; AltName: Full=Non-structural protein 3; Contains: RecName: Full=Non-structural protein 4A; Short=NS4A; Contains: RecName: Full=Peptide 2k; Contains: RecName: Full=Non-structural protein 4B; Short=NS4B; Contains: RecName: Full=RNA-directed RNA polymerase NS5; AltName: Full=Non-structural protein 5 [Japanese encephalitis virus strain JAOARS982] Sequence ID: P32886.1 Length: 3432 Range 1: 1505 to 2123 Score:1100 bits(2845), Expect:0.0, Method:Compositional matrix adjust., Identities:507/619(82%), Positives:567/619(91%), Gaps:0/619(0%) Query 1 GGVLWDTPSPKEYKKGDTTTGVYRIMTRGLLGSYQAGAGVMVEGVFHTLWHTTKGAALMS 60 GGV WDTPSPK KGDTTTGVYRIM RG+LG+YQAG GVM E VFHTLWHTT+GAA+MS Sbjct 1505 GGVFWDTPSPKPCSKGDTTTGVYRIMARGILGTYQAGVGVMYENVFHTLWHTTRGAAIMS 1564 Query 61 GEGRLDPYWGSVKEDRLCYGGPWKLQHKWNGQDEVQMIVVEPGKNVKNVQTKPGVFKTPE 120 GEG+L PYWGSVKEDR+ YGGPW+ KWNG D+VQ+IVVEPGK N+QTKPGVF+TP Sbjct 1565 GEGKLTPYWGSVKEDRIAYGGPWRFDRKWNGTDDVQVIVVEPGKAAVNIQTKPGVFRTPF 1624 Query 121 GEIGAVTLDFPTGTSGSPIVDKNGDVIGLYGNGVIMPNGSYISAIVQGERMDEPIPAGFE 180 GE+GAV+LD+P GTSGSPI+D NGD+IGLYGNGV + +GSY+SAIVQG+R +EP+P + Sbjct 1625 GEVGAVSLDYPRGTSGSPILDSNGDIIGLYGNGVELGDGSYVSAIVQGDRQEEPVPEAYT 1684 Query 181 PEMLRKKQITVLDLHPGAGKTRRILPQIIKEAINRRLRTAVLAPTRVVAAEMAEALRGLP 240 P MLRK+Q+TVLDLHPG+GKTR+ILPQIIK+AI +RLRTAVLAPTRVVAAEMAEALRGLP Sbjct 1685 PNMLRKRQMTVLDLHPGSGKTRKILPQIIKDAIQQRLRTAVLAPTRVVAAEMAEALRGLP 1744 Query 241 IRYQTSAVPREHNGNEIVDVMCHATLTHRLMSPHRVPNYNLFVMDEAHFTDPASIAARGY 300 +RYQTSAV REH GNEIVDVMCHATLTHRLMSP+RVPNYNLFVMDEAHFTDPASIAARGY Sbjct 1745 VRYQTSAVQREHQGNEIVDVMCHATLTHRLMSPNRVPNYNLFVMDEAHFTDPASIAARGY 1804 Query 301 ISTKVELGEAAAIFMTATPPGTSDPFPESNSPISDLQTEIPDRAWNSGYEWITEYTGKTV 360 I+TKVELGEAAAIFMTATPPGT+DPFP+SN+PI DLQ EIPDRAW+SGYEWITEY GKTV Sbjct 1805 IATKVELGEAAAIFMTATPPGTTDPFPDSNAPIHDLQDEIPDRAWSSGYEWITEYAGKTV 1864 Query 361 WFVPSVKMGNEIALCLQRAGKKVVQLNRKSYETEYPKCKNDDWDFVITTDISEMGANFKA 420 WFV SVKMGNEIA+CLQRAGKKV+QLNRKSY+TEYPKCKN DWDFVITTDISEMGANF A Sbjct 1865 WFVASVKMGNEIAMCLQRAGKKVIQLNRKSYDTEYPKCKNGDWDFVITTDISEMGANFGA 1924 Query 421 SRVIDSRKSVKPTIITEGEGRVILGEPSAVTAASAAQRRGRIGRNPSQVGDEYCYGGHTN 480 SRVID RKSVKPTI+ EGEGRVILG PS +T+ASAAQRRGR+GRNP+QVGDEY YGG T+ Sbjct 1925 SRVIDCRKSVKPTILEEGEGRVILGNPSPITSASAAQRRGRVGRNPNQVGDEYHYGGATS 1984 Query 481 EDDSNFAHWTEARIMLDNINMPNGLIAQFYQPEREKVYTMDGEYRLRGEERKNFLELLRT 540 EDDSN AHWTEA+IMLDNI+MPNGL+AQ Y PEREK +TMDGEYRLRGEE+KNFLELLRT Sbjct 1985 EDDSNLAHWTEAKIMLDNIHMPNGLVAQLYGPEREKAFTMDGEYRLRGEEKKNFLELLRT 2044 Query 541 ADLPVWLAYKVAAAGVSYHDRRWCFDGPRTNTILEDNNEVEVITKLGERKILRPRWIDAR 600 ADLPVWLAYKVA+ G+ Y DRRWCFDGPRTN ILEDN EVE++T++GERKIL+PRW+DAR Sbjct 2045 ADLPVWLAYKVASNGIQYTDRRWCFDGPRTNAILEDNTEVEIVTRMGERKILKPRWLDAR 2104 Query 601 VYSDHQALKAFKDFASGKR 619 VY+DHQALK FKDFA+GKR Sbjct 2105 VYADHQALKWFKDFAAGKR 2123 >RecName: Full=Genome polyprotein; Contains: RecName: Full=Capsid protein C; AltName: Full=Core protein; Contains: RecName: Full=Protein prM; Contains: RecName: Full=Peptide pr; Contains: RecName: Full=Small envelope protein M; AltName: Full=Matrix protein; Contains: RecName: Full=Envelope protein E; Contains: RecName: Full=Non-structural protein 1; Short=NS1; Contains: RecName: Full=Non-structural protein 2A; Short=NS2A; Contains: RecName: Full=Serine protease subunit NS2B; AltName: Full=Flavivirin protease NS2B regulatory subunit; AltName: Full=Non-structural protein 2B; Contains: RecName: Full=Serine protease NS3; AltName: Full=Flavivirin protease NS3 catalytic subunit; AltName: Full=Non-structural protein 3; Contains: RecName: Full=Non-structural protein 4A; Short=NS4A; Contains: RecName: Full=Peptide 2k; Contains: RecName: Full=Non-structural protein 4B; Short=NS4B; Contains: RecName: Full=RNA-directed RNA polymerase NS5; AltName: Full=Non-structural protein 5 [Japanese encephalitis virus strain SA-14] Sequence ID: P27395.1 Length: 3432 Range 1: 1505 to 2123 Score:1098 bits(2839), Expect:0.0, Method:Compositional matrix adjust., Identities:505/619(82%), Positives:567/619(91%), Gaps:0/619(0%) Query 1 GGVLWDTPSPKEYKKGDTTTGVYRIMTRGLLGSYQAGAGVMVEGVFHTLWHTTKGAALMS 60 GGV WDTPSPK KGDTTTGVYRIM RG+LG+YQAG GVM E VFHTLWHTT+GAA+MS Sbjct 1505 GGVFWDTPSPKPCSKGDTTTGVYRIMARGILGTYQAGVGVMYENVFHTLWHTTRGAAIMS 1564 Query 61 GEGRLDPYWGSVKEDRLCYGGPWKLQHKWNGQDEVQMIVVEPGKNVKNVQTKPGVFKTPE 120 GEG+L PYWGSV+EDR+ YGGPW+ KWNG D+VQ+IVVEPGK N+QTKPGVF+TP Sbjct 1565 GEGKLTPYWGSVREDRIAYGGPWRFDRKWNGTDDVQVIVVEPGKAAVNIQTKPGVFRTPF 1624 Query 121 GEIGAVTLDFPTGTSGSPIVDKNGDVIGLYGNGVIMPNGSYISAIVQGERMDEPIPAGFE 180 GE+GAV+LD+P GTSGSPI+D NGD+IGLYGNGV + +GSY+SAIVQG+R +EP+P + Sbjct 1625 GEVGAVSLDYPRGTSGSPILDSNGDIIGLYGNGVELGDGSYVSAIVQGDRQEEPVPEAYT 1684 Query 181 PEMLRKKQITVLDLHPGAGKTRRILPQIIKEAINRRLRTAVLAPTRVVAAEMAEALRGLP 240 P MLRK+Q+TVLDLHPG+GKTR+ILPQIIK+AI +RLRTAVLAPTRVVAAEMAEALRGLP Sbjct 1685 PNMLRKRQMTVLDLHPGSGKTRKILPQIIKDAIQQRLRTAVLAPTRVVAAEMAEALRGLP 1744 Query 241 IRYQTSAVPREHNGNEIVDVMCHATLTHRLMSPHRVPNYNLFVMDEAHFTDPASIAARGY 300 +RYQTSAV REH GNEIVDVMCHATLTHRLMSP+RVPNYNLFVMDEAHFTDPASIAARGY Sbjct 1745 VRYQTSAVQREHQGNEIVDVMCHATLTHRLMSPNRVPNYNLFVMDEAHFTDPASIAARGY 1804 Query 301 ISTKVELGEAAAIFMTATPPGTSDPFPESNSPISDLQTEIPDRAWNSGYEWITEYTGKTV 360 I+TKVELGEAAAIFMTATPPGT+DPFP+SN+PI DLQ EIPDRAW+SGYEWITEY GKTV Sbjct 1805 IATKVELGEAAAIFMTATPPGTTDPFPDSNAPIHDLQDEIPDRAWSSGYEWITEYAGKTV 1864 Query 361 WFVPSVKMGNEIALCLQRAGKKVVQLNRKSYETEYPKCKNDDWDFVITTDISEMGANFKA 420 WFV SVKMGNEIA+CLQRAGKKV+QLNRKSY+TEYPKCKN DWDFVITTDISEMGANF A Sbjct 1865 WFVASVKMGNEIAMCLQRAGKKVIQLNRKSYDTEYPKCKNGDWDFVITTDISEMGANFGA 1924 Query 421 SRVIDSRKSVKPTIITEGEGRVILGEPSAVTAASAAQRRGRIGRNPSQVGDEYCYGGHTN 480 SRVID RKSVKPTI+ EGEGRVILG PS +T+ASAAQRRGR+GRNP+QVGDEY YGG T+ Sbjct 1925 SRVIDCRKSVKPTILEEGEGRVILGNPSPITSASAAQRRGRVGRNPNQVGDEYHYGGATS 1984 Query 481 EDDSNFAHWTEARIMLDNINMPNGLIAQFYQPEREKVYTMDGEYRLRGEERKNFLELLRT 540 EDDSN AHWTEA+IMLDNI+MPNGL+AQ Y PEREK +TMDGEYRLRGEE+KNFLELLRT Sbjct 1985 EDDSNLAHWTEAKIMLDNIHMPNGLVAQLYGPEREKAFTMDGEYRLRGEEKKNFLELLRT 2044 Query 541 ADLPVWLAYKVAAAGVSYHDRRWCFDGPRTNTILEDNNEVEVITKLGERKILRPRWIDAR 600 ADLPVWLAYKVA+ G+ Y DR+WCFDGPRTN ILEDN EVE++T++GERKIL+PRW+DAR Sbjct 2045 ADLPVWLAYKVASNGIQYTDRKWCFDGPRTNAILEDNTEVEIVTRMGERKILKPRWLDAR 2104 Query 601 VYSDHQALKAFKDFASGKR 619 VY+DHQALK FKDFA+GKR Sbjct 2105 VYADHQALKWFKDFAAGKR 2123 >RecName: Full=Genome polyprotein; Contains: RecName: Full=Capsid protein C; AltName: Full=Core protein; Contains: RecName: Full=Protein prM; Contains: RecName: Full=Peptide pr; Contains: RecName: Full=Small envelope protein M; AltName: Full=Matrix protein; Contains: RecName: Full=Envelope protein E; Contains: RecName: Full=Non-structural protein 1; Short=NS1; Contains: RecName: Full=Non-structural protein 2A; Short=NS2A; Contains: RecName: Full=Serine protease subunit NS2B; AltName: Full=Flavivirin protease NS2B regulatory subunit; AltName: Full=Non-structural protein 2B; Contains: RecName: Full=Serine protease NS3; AltName: Full=Flavivirin protease NS3 catalytic subunit; AltName: Full=Non-structural protein 3; Contains: RecName: Full=Non-structural protein 4A; Short=NS4A; Contains: RecName: Full=Peptide 2k; Contains: RecName: Full=Non-structural protein 4B; Short=NS4B; Contains: RecName: Full=RNA-directed RNA polymerase NS5; AltName: Full=Non-structural protein 5 [Japanese encephalitis virus strain SA(V)] Sequence ID: P19110.1 Length: 3432 Range 1: 1505 to 2123 Score:1097 bits(2836), Expect:0.0, Method:Compositional matrix adjust., Identities:504/619(81%), Positives:566/619(91%), Gaps:0/619(0%) Query 1 GGVLWDTPSPKEYKKGDTTTGVYRIMTRGLLGSYQAGAGVMVEGVFHTLWHTTKGAALMS 60 GGV WDTPSPK KGDTTTGVYRIM RG+LG+YQAG GVM E VFHTLWHTT+GAA+MS Sbjct 1505 GGVFWDTPSPKPCSKGDTTTGVYRIMARGILGTYQAGVGVMYENVFHTLWHTTRGAAIMS 1564 Query 61 GEGRLDPYWGSVKEDRLCYGGPWKLQHKWNGQDEVQMIVVEPGKNVKNVQTKPGVFKTPE 120 GEG+L PYWGSV+EDR+ YGGPW+ KWNG D+VQ+IVVEPGK N+QTKPGVF+TP Sbjct 1565 GEGKLTPYWGSVREDRIAYGGPWRFDRKWNGTDDVQVIVVEPGKAAVNIQTKPGVFRTPF 1624 Query 121 GEIGAVTLDFPTGTSGSPIVDKNGDVIGLYGNGVIMPNGSYISAIVQGERMDEPIPAGFE 180 GE+GAV+LD+P GTSGSPI+D NGD+IGLYGNGV + +GSY+SAIVQG+R +EP+P + Sbjct 1625 GEVGAVSLDYPRGTSGSPILDSNGDIIGLYGNGVELGDGSYVSAIVQGDRQEEPVPEAYT 1684 Query 181 PEMLRKKQITVLDLHPGAGKTRRILPQIIKEAINRRLRTAVLAPTRVVAAEMAEALRGLP 240 P MLRK+Q+TVLDLHPG+GKTR+ILPQIIK+AI +RLRTAVLAPTRVVAAEMAE LRGLP Sbjct 1685 PNMLRKRQMTVLDLHPGSGKTRKILPQIIKDAIQQRLRTAVLAPTRVVAAEMAEVLRGLP 1744 Query 241 IRYQTSAVPREHNGNEIVDVMCHATLTHRLMSPHRVPNYNLFVMDEAHFTDPASIAARGY 300 +RYQTSAV REH GNEIVDVMCHATLTHRLMSP+RVPNYNLFVMDEAHFTDPASIAARGY Sbjct 1745 VRYQTSAVQREHQGNEIVDVMCHATLTHRLMSPNRVPNYNLFVMDEAHFTDPASIAARGY 1804 Query 301 ISTKVELGEAAAIFMTATPPGTSDPFPESNSPISDLQTEIPDRAWNSGYEWITEYTGKTV 360 I+TKVELGEAAAIFMTATPPGT+DPFP+SN+PI DLQ EIPDRAW+SGYEWITEY GKTV Sbjct 1805 IATKVELGEAAAIFMTATPPGTTDPFPDSNAPIHDLQDEIPDRAWSSGYEWITEYAGKTV 1864 Query 361 WFVPSVKMGNEIALCLQRAGKKVVQLNRKSYETEYPKCKNDDWDFVITTDISEMGANFKA 420 WFV SVKMGNEIA+CLQRAGKKV+QLNRKSY+TEYPKCKN DWDFVITTDISEMGANF A Sbjct 1865 WFVASVKMGNEIAMCLQRAGKKVIQLNRKSYDTEYPKCKNGDWDFVITTDISEMGANFGA 1924 Query 421 SRVIDSRKSVKPTIITEGEGRVILGEPSAVTAASAAQRRGRIGRNPSQVGDEYCYGGHTN 480 SRVID RKSVKPTI+ EGEGRVILG PS +T+ASAAQRRGR+GRNP+QVGDEY YGG T+ Sbjct 1925 SRVIDCRKSVKPTILEEGEGRVILGNPSPITSASAAQRRGRVGRNPNQVGDEYHYGGATS 1984 Query 481 EDDSNFAHWTEARIMLDNINMPNGLIAQFYQPEREKVYTMDGEYRLRGEERKNFLELLRT 540 EDDSN AHWTEA+IMLDNI+MPNGL+AQ Y PEREK +TMDGEYRLRGEE+KNFLELLRT Sbjct 1985 EDDSNLAHWTEAKIMLDNIHMPNGLVAQLYGPEREKAFTMDGEYRLRGEEKKNFLELLRT 2044 Query 541 ADLPVWLAYKVAAAGVSYHDRRWCFDGPRTNTILEDNNEVEVITKLGERKILRPRWIDAR 600 ADLPVWLAYKVA+ G+ Y DR+WCFDGPRTN ILEDN EVE++T++GERKIL+PRW+DAR Sbjct 2045 ADLPVWLAYKVASNGIQYTDRKWCFDGPRTNAILEDNTEVEIVTRMGERKILKPRWLDAR 2104 Query 601 VYSDHQALKAFKDFASGKR 619 VY+DHQALK FKDFA+GKR Sbjct 2105 VYADHQALKWFKDFAAGKR 2123 >RecName: Full=Genome polyprotein; Contains: RecName: Full=Capsid protein C; AltName: Full=Core protein; Contains: RecName: Full=Protein prM; Contains: RecName: Full=Peptide pr; Contains: RecName: Full=Small envelope protein M; AltName: Full=Matrix protein; Contains: RecName: Full=Envelope protein E; Contains: RecName: Full=Non-structural protein 1; Short=NS1; Contains: RecName: Full=Non-structural protein 2A; Short=NS2A; Contains: RecName: Full=Serine protease subunit NS2B; AltName: Full=Flavivirin protease NS2B regulatory subunit; AltName: Full=Non-structural protein 2B; Contains: RecName: Full=Serine protease NS3; AltName: Full=Flavivirin protease NS3 catalytic subunit; AltName: Full=Non-structural protein 3; Contains: RecName: Full=Non-structural protein 4A; Short=NS4A; Contains: RecName: Full=Peptide 2k; Contains: RecName: Full=Non-structural protein 4B; Short=NS4B; Contains: RecName: Full=RNA-directed RNA polymerase NS5; AltName: Full=Non-structural protein 5 [Japanese encephalitis virus strain M28] Sequence ID: G3FEX6.1 Length: 3432 Range 1: 1505 to 2123 Score:1096 bits(2834), Expect:0.0, Method:Compositional matrix adjust., Identities:506/619(82%), Positives:567/619(91%), Gaps:0/619(0%) Query 1 GGVLWDTPSPKEYKKGDTTTGVYRIMTRGLLGSYQAGAGVMVEGVFHTLWHTTKGAALMS 60 GGV WDTPSPK KGDTTTGVYRIM RG+LG+YQAG GVM E VFHTLWHTT+GAA+MS Sbjct 1505 GGVFWDTPSPKPCLKGDTTTGVYRIMARGILGTYQAGVGVMYENVFHTLWHTTRGAAIMS 1564 Query 61 GEGRLDPYWGSVKEDRLCYGGPWKLQHKWNGQDEVQMIVVEPGKNVKNVQTKPGVFKTPE 120 GEG+L PYWGSVKEDR+ YGGPW+ KWNG D+VQ+IVVEPGK N+QTKPGVF+TP Sbjct 1565 GEGKLTPYWGSVKEDRISYGGPWRFDRKWNGTDDVQVIVVEPGKPAVNIQTKPGVFRTPF 1624 Query 121 GEIGAVTLDFPTGTSGSPIVDKNGDVIGLYGNGVIMPNGSYISAIVQGERMDEPIPAGFE 180 GEIGAV+LD+P GTSGSPI+D NGD+IGLYGNGV + +GSY+SAIVQG+R +EP+P + Sbjct 1625 GEIGAVSLDYPRGTSGSPILDSNGDIIGLYGNGVELGDGSYVSAIVQGDRQEEPVPDAYT 1684 Query 181 PEMLRKKQITVLDLHPGAGKTRRILPQIIKEAINRRLRTAVLAPTRVVAAEMAEALRGLP 240 P ML+K+Q+TVLDLHPG+GKTR+ILPQIIK+AI +RLRTAVLAPTRVVAAEMAEALRGLP Sbjct 1685 PSMLKKRQMTVLDLHPGSGKTRKILPQIIKDAIQQRLRTAVLAPTRVVAAEMAEALRGLP 1744 Query 241 IRYQTSAVPREHNGNEIVDVMCHATLTHRLMSPHRVPNYNLFVMDEAHFTDPASIAARGY 300 +RYQTSAV REH GNEIVDVMCHATLTHRLMSP+RVPNYNLFVMDEAHFTDPASIAARGY Sbjct 1745 VRYQTSAVQREHQGNEIVDVMCHATLTHRLMSPNRVPNYNLFVMDEAHFTDPASIAARGY 1804 Query 301 ISTKVELGEAAAIFMTATPPGTSDPFPESNSPISDLQTEIPDRAWNSGYEWITEYTGKTV 360 I+TKVELGEAAAIFMTATPPGT+DPFP+SN+PI DLQ EIPDRAW+SGYEWITEY GKTV Sbjct 1805 IATKVELGEAAAIFMTATPPGTTDPFPDSNAPIHDLQDEIPDRAWSSGYEWITEYAGKTV 1864 Query 361 WFVPSVKMGNEIALCLQRAGKKVVQLNRKSYETEYPKCKNDDWDFVITTDISEMGANFKA 420 WFV SVKMGNEIA+CLQRAGKKV+QLNRKSY+TEYPKCKN DWDFVITTDISEMGANF A Sbjct 1865 WFVASVKMGNEIAMCLQRAGKKVIQLNRKSYDTEYPKCKNGDWDFVITTDISEMGANFGA 1924 Query 421 SRVIDSRKSVKPTIITEGEGRVILGEPSAVTAASAAQRRGRIGRNPSQVGDEYCYGGHTN 480 SRVID RKSVKPTI+ EGEGRVILG PS +T+ASAAQRRGR+GRNP+QVGDEY YGG T+ Sbjct 1925 SRVIDCRKSVKPTILEEGEGRVILGNPSPITSASAAQRRGRVGRNPNQVGDEYHYGGATS 1984 Query 481 EDDSNFAHWTEARIMLDNINMPNGLIAQFYQPEREKVYTMDGEYRLRGEERKNFLELLRT 540 EDDSN AHWTEA+IMLDNI+MPNGL+AQ Y PEREK +TMDGEYRLRGEE+KNFLELLRT Sbjct 1985 EDDSNLAHWTEAKIMLDNIHMPNGLVAQLYGPEREKAFTMDGEYRLRGEEKKNFLELLRT 2044 Query 541 ADLPVWLAYKVAAAGVSYHDRRWCFDGPRTNTILEDNNEVEVITKLGERKILRPRWIDAR 600 ADLPVWLAYKVA+ G+ Y DR+WCFDGPRTN ILEDN EVE++T++GERKIL+PRW+DAR Sbjct 2045 ADLPVWLAYKVASNGIQYTDRKWCFDGPRTNAILEDNTEVEIVTRMGERKILKPRWLDAR 2104 Query 601 VYSDHQALKAFKDFASGKR 619 VY+DHQALK FKDFA+GKR Sbjct 2105 VYADHQALKWFKDFAAGKR 2123 >RecName: Full=Genome polyprotein; Contains: RecName: Full=Peptide 2k; Contains: RecName: Full=Capsid protein C; AltName: Full=Core protein; Contains: RecName: Full=Protein prM; Contains: RecName: Full=Peptide pr; Contains: RecName: Full=Small envelope protein M; AltName: Full=Matrix protein; Contains: RecName: Full=Envelope protein E; Contains: RecName: Full=Non-structural protein 1; Short=NS1; Contains: RecName: Full=Non-structural protein 2A; Short=NS2A; Contains: RecName: Full=Serine protease subunit NS2B; AltName: Full=Flavivirin protease NS2B regulatory subunit; AltName: Full=Non-structural protein 2B; Contains: RecName: Full=Serine protease NS3; AltName: Full=Flavivirin protease NS3 catalytic subunit; AltName: Full=Non-structural protein 3; Contains: RecName: Full=Non-structural protein 4A; Short=NS4A; Contains: RecName: Full=Non-structural protein 4B; Short=NS4B; Contains: RecName: Full=RNA-directed RNA polymerase NS5; AltName: Full=Non-structural protein 5 [Murray valley encephalitis virus (strain MVE-1-51)] Sequence ID: P05769.2 Length: 3434 Range 1: 1504 to 2122 Score:1082 bits(2799), Expect:0.0, Method:Compositional matrix adjust., Identities:498/619(80%), Positives:565/619(91%), Gaps:0/619(0%) Query 1 GGVLWDTPSPKEYKKGDTTTGVYRIMTRGLLGSYQAGAGVMVEGVFHTLWHTTKGAALMS 60 GGV WDTPSPK Y KGDTT GVYRIM RG+LG YQAG GVM EGVFHTLWHTT+GAA+MS Sbjct 1504 GGVFWDTPSPKVYPKGDTTPGVYRIMARGILGRYQAGVGVMHEGVFHTLWHTTRGAAIMS 1563 Query 61 GEGRLDPYWGSVKEDRLCYGGPWKLQHKWNGQDEVQMIVVEPGKNVKNVQTKPGVFKTPE 120 GEGRL PYWG+VKEDR+ YGGPWKL KWNG D+VQMIVVEPGK NVQTKPG+FKT Sbjct 1564 GEGRLTPYWGNVKEDRVTYGGPWKLDQKWNGVDDVQMIVVEPGKPAINVQTKPGIFKTAH 1623 Query 121 GEIGAVTLDFPTGTSGSPIVDKNGDVIGLYGNGVIMPNGSYISAIVQGERMDEPIPAGFE 180 GEIGAV+LD+P GTSGSPIV+ NG++IGLYGNGVI+ NG+Y+SAIVQGER++EP+P + Sbjct 1624 GEIGAVSLDYPIGTSGSPIVNSNGEIIGLYGNGVILGNGAYVSAIVQGERVEEPVPEAYN 1683 Query 181 PEMLRKKQITVLDLHPGAGKTRRILPQIIKEAINRRLRTAVLAPTRVVAAEMAEALRGLP 240 PEML+K+Q+TVLDLHPGAGKTRRILPQIIK+AI +RLRTAVLAPTRVVAAEMAEALRGLP Sbjct 1684 PEMLKKRQLTVLDLHPGAGKTRRILPQIIKDAIQKRLRTAVLAPTRVVAAEMAEALRGLP 1743 Query 241 IRYQTSAVPREHNGNEIVDVMCHATLTHRLMSPHRVPNYNLFVMDEAHFTDPASIAARGY 300 +RY T AV REH+GNEIVDVMCHATLTHRLMSP RVPNYNLFVMDEAHFTDPASIAARGY Sbjct 1744 VRYLTPAVQREHSGNEIVDVMCHATLTHRLMSPLRVPNYNLFVMDEAHFTDPASIAARGY 1803 Query 301 ISTKVELGEAAAIFMTATPPGTSDPFPESNSPISDLQTEIPDRAWNSGYEWITEYTGKTV 360 I+T+VE GEAAAIFMTATPPGTSDPFP++NSP+ D+ +EIPDRAW+SG+EWIT+Y GKTV Sbjct 1804 IATRVEAGEAAAIFMTATPPGTSDPFPDTNSPVHDVSSEIPDRAWSSGFEWITDYAGKTV 1863 Query 361 WFVPSVKMGNEIALCLQRAGKKVVQLNRKSYETEYPKCKNDDWDFVITTDISEMGANFKA 420 WFV SVKM NEIA CLQRAGK+V+QLNRKSY+TEYPKCKN DWDFVITTDISEMGANF A Sbjct 1864 WFVASVKMSNEIAQCLQRAGKRVIQLNRKSYDTEYPKCKNGDWDFVITTDISEMGANFGA 1923 Query 421 SRVIDSRKSVKPTIITEGEGRVILGEPSAVTAASAAQRRGRIGRNPSQVGDEYCYGGHTN 480 SRVID RKSVKPTI+ EGEGRVIL PSA+T+ASAAQRRGR+GRNPSQ+GDEY YGG T+ Sbjct 1924 SRVIDCRKSVKPTILDEGEGRVILSVPSAITSASAAQRRGRVGRNPSQIGDEYHYGGGTS 1983 Query 481 EDDSNFAHWTEARIMLDNINMPNGLIAQFYQPEREKVYTMDGEYRLRGEERKNFLELLRT 540 EDD+ AHWTEA+I+LDNI++PNGL+AQ Y PER+K YTMDGEYRLRGEERK FLEL++T Sbjct 1984 EDDTMLAHWTEAKILLDNIHLPNGLVAQLYGPERDKTYTMDGEYRLRGEERKTFLELIKT 2043 Query 541 ADLPVWLAYKVAAAGVSYHDRRWCFDGPRTNTILEDNNEVEVITKLGERKILRPRWIDAR 600 ADLPVWLAYKVA+ G+ Y+DR+WCFDGPR+N ILEDNNEVE+IT++GERK+L+PRW+DAR Sbjct 2044 ADLPVWLAYKVASNGIQYNDRKWCFDGPRSNIILEDNNEVEIITRIGERKVLKPRWLDAR 2103 Query 601 VYSDHQALKAFKDFASGKR 619 VYSDHQ+LK FKDFA+GKR Sbjct 2104 VYSDHQSLKWFKDFAAGKR 2122 >RecName: Full=Genome polyprotein; Contains: RecName: Full=Peptide 2k; Contains: RecName: Full=Capsid protein C; AltName: Full=Core protein; Contains: RecName: Full=Protein prM; Contains: RecName: Full=Peptide pr; Contains: RecName: Full=Small envelope protein M; AltName: Full=Matrix protein; Contains: RecName: Full=Envelope protein E; Contains: RecName: Full=Non-structural protein 1; Short=NS1; Contains: RecName: Full=Non-structural protein 2A; Short=NS2A; Contains: RecName: Full=Serine protease subunit NS2B; AltName: Full=Flavivirin protease NS2B regulatory subunit; AltName: Full=Non-structural protein 2B; Contains: RecName: Full=Serine protease NS3; AltName: Full=Flavivirin protease NS3 catalytic subunit; AltName: Full=Non-structural protein 3; Contains: RecName: Full=Non-structural protein 4A; Short=NS4A; Contains: RecName: Full=Non-structural protein 4B; Short=NS4B; Contains: RecName: Full=RNA-directed RNA polymerase NS5; AltName: Full=Non-structural protein 5 [Usutu virus] Sequence ID: Q5WPU5.1 Length: 3434 Range 1: 1504 to 2122 Score:1072 bits(2772), Expect:0.0, Method:Compositional matrix adjust., Identities:492/619(79%), Positives:561/619(90%), Gaps:0/619(0%) Query 1 GGVLWDTPSPKEYKKGDTTTGVYRIMTRGLLGSYQAGAGVMVEGVFHTLWHTTKGAALMS 60 GGV WDTP+P+ Y KGDT+ GVYRIM+R +LG+YQAG GVM EGV HTLWHTT+GAA+ S Sbjct 1504 GGVFWDTPAPRTYPKGDTSPGVYRIMSRYILGTYQAGVGVMYEGVLHTLWHTTRGAAIRS 1563 Query 61 GEGRLDPYWGSVKEDRLCYGGPWKLQHKWNGQDEVQMIVVEPGKNVKNVQTKPGVFKTPE 120 GEGRL PYWGSVKEDR+ YGGPWK KWNG D+VQ+I+V PGK N+QTKPG+FKTP+ Sbjct 1564 GEGRLTPYWGSVKEDRITYGGPWKFDRKWNGLDDVQLIIVAPGKAAINIQTKPGIFKTPQ 1623 Query 121 GEIGAVTLDFPTGTSGSPIVDKNGDVIGLYGNGVIMPNGSYISAIVQGERMDEPIPAGFE 180 GEIGAV+LD+P GTSGSPI+DKNGD++GLYGNGVI+ NGSY+SAIVQGER +EP+P + Sbjct 1624 GEIGAVSLDYPEGTSGSPILDKNGDIVGLYGNGVILGNGSYVSAIVQGEREEEPVPEAYN 1683 Query 181 PEMLRKKQITVLDLHPGAGKTRRILPQIIKEAINRRLRTAVLAPTRVVAAEMAEALRGLP 240 +MLRKKQ+TVLDLHPGAGKTRRILPQIIK+AI RRLRTAVLAPTRVVAAEMAEAL+GLP Sbjct 1684 ADMLRKKQLTVLDLHPGAGKTRRILPQIIKDAIQRRLRTAVLAPTRVVAAEMAEALKGLP 1743 Query 241 IRYQTSAVPREHNGNEIVDVMCHATLTHRLMSPHRVPNYNLFVMDEAHFTDPASIAARGY 300 +RY T AV REH+G EIVDVMCHATLTHRLMSP R PNYNLFVMDEAHFTDPASIAARGY Sbjct 1744 VRYLTPAVNREHSGTEIVDVMCHATLTHRLMSPLRAPNYNLFVMDEAHFTDPASIAARGY 1803 Query 301 ISTKVELGEAAAIFMTATPPGTSDPFPESNSPISDLQTEIPDRAWNSGYEWITEYTGKTV 360 I+TKVELGEAAAIFMTATPPGT DPFP++N+P++D+Q E+PDRAW+SG+EWITEYTGKTV Sbjct 1804 IATKVELGEAAAIFMTATPPGTHDPFPDTNAPVTDIQAEVPDRAWSSGFEWITEYTGKTV 1863 Query 361 WFVPSVKMGNEIALCLQRAGKKVVQLNRKSYETEYPKCKNDDWDFVITTDISEMGANFKA 420 WFV SVKMGNEIA CLQRAGKKV+QLNRKSY+TEYPKCKN DWDFVITTDISEMGANF A Sbjct 1864 WFVASVKMGNEIAQCLQRAGKKVIQLNRKSYDTEYPKCKNGDWDFVITTDISEMGANFGA 1923 Query 421 SRVIDSRKSVKPTIITEGEGRVILGEPSAVTAASAAQRRGRIGRNPSQVGDEYCYGGHTN 480 SRVID RKSVKPTI+ EGEGRVIL PS +T+ASAAQRRGR+GRNPSQ+GDEY YGG T+ Sbjct 1924 SRVIDCRKSVKPTILEEGEGRVILSNPSPITSASAAQRRGRVGRNPSQIGDEYHYGGGTS 1983 Query 481 EDDSNFAHWTEARIMLDNINMPNGLIAQFYQPEREKVYTMDGEYRLRGEERKNFLELLRT 540 EDD+ AHWTEA+IMLDNI++PNGL+AQ Y PER+K +TMDGEYRLRGEERK FLELLRT Sbjct 1984 EDDTIAAHWTEAKIMLDNIHLPNGLVAQMYGPERDKAFTMDGEYRLRGEERKTFLELLRT 2043 Query 541 ADLPVWLAYKVAAAGVSYHDRRWCFDGPRTNTILEDNNEVEVITKLGERKILRPRWIDAR 600 ADLPVWLAYKVA+ G+ Y DR+WCFDGPR+N ILEDNNEVE++T+ GERK+L+PRW+DAR Sbjct 2044 ADLPVWLAYKVASNGIQYTDRKWCFDGPRSNIILEDNNEVEIVTRTGERKMLKPRWLDAR 2103 Query 601 VYSDHQALKAFKDFASGKR 619 VY+DHQ+LK FKDFA+GKR Sbjct 2104 VYADHQSLKWFKDFAAGKR 2122 >RecName: Full=Genome polyprotein; Contains: RecName: Full=Capsid protein C; AltName: Full=Core protein; Contains: RecName: Full=Protein prM; Contains: RecName: Full=Peptide pr; Contains: RecName: Full=Small envelope protein M; AltName: Full=Matrix protein; Contains: RecName: Full=Envelope protein E; Contains: RecName: Full=Non-structural protein 1; Short=NS1; Contains: RecName: Full=Non-structural protein 2A; Short=NS2A; Contains: RecName: Full=Serine protease subunit NS2B; AltName: Full=Flavivirin protease NS2B regulatory subunit; AltName: Full=Non-structural protein 2B; Contains: RecName: Full=Serine protease NS3; AltName: Full=Flavivirin protease NS3 catalytic subunit; AltName: Full=Non-structural protein 3; Contains: RecName: Full=Non-structural protein 4A; Short=NS4A; Contains: RecName: Full=Peptide 2k; Contains: RecName: Full=Non-structural protein 4B; Short=NS4B; Contains: RecName: Full=RNA-directed RNA polymerase NS5; AltName: Full=Non-structural protein 5 [Rocio virus] Sequence ID: Q32ZD4.1 Length: 3425 Range 1: 1498 to 2116 Score:980 bits(2534), Expect:0.0, Method:Compositional matrix adjust., Identities:447/619(72%), Positives:534/619(86%), Gaps:0/619(0%) Query 1 GGVLWDTPSPKEYKKGDTTTGVYRIMTRGLLGSYQAGAGVMVEGVFHTLWHTTKGAALMS 60 GGVLWD P+PK+ + D GVYR+MT G+LGSYQ+G GVM +GVFHT+WH T+GAAL + Sbjct 1498 GGVLWDLPAPKQMGRSDMKPGVYRVMTSGVLGSYQSGVGVMYDGVFHTMWHVTQGAALRN 1557 Query 61 GEGRLDPYWGSVKEDRLCYGGPWKLQHKWNGQDEVQMIVVEPGKNVKNVQTKPGVFKTPE 120 GEGRL+P WGSV++D + YGG WKL W+G +EVQ+I EPGK VKN QT+PGVFKTP Sbjct 1558 GEGRLNPTWGSVRDDLITYGGKWKLSATWDGTEEVQLIAAEPGKPVKNFQTRPGVFKTPA 1617 Query 121 GEIGAVTLDFPTGTSGSPIVDKNGDVIGLYGNGVIMPNGSYISAIVQGERMDEPIPAGFE 180 GE+GA+TLDFP GTSGSPIV+K G VIGLYGNG+++ +G+Y+SAI QGER +E P F Sbjct 1618 GEVGAITLDFPKGTSGSPIVNKAGAVIGLYGNGLVLSHGAYVSAISQGERQEEEAPEAFT 1677 Query 181 PEMLRKKQITVLDLHPGAGKTRRILPQIIKEAINRRLRTAVLAPTRVVAAEMAEALRGLP 240 PEMLRK+Q+T+LDLHPGAGKTRR++PQI++EA+ +RLRT +LAP+RVVAAE+AEALRGLP Sbjct 1678 PEMLRKRQLTILDLHPGAGKTRRVIPQIVREAVKQRLRTVILAPSRVVAAEIAEALRGLP 1737 Query 241 IRYQTSAVPREHNGNEIVDVMCHATLTHRLMSPHRVPNYNLFVMDEAHFTDPASIAARGY 300 +R+QTSAV EH+G EIVDVMCHATLT RLM+P RVPNYN+FVMDEAHFTDPASIAARGY Sbjct 1738 VRFQTSAVKAEHSGTEIVDVMCHATLTQRLMTPMRVPNYNVFVMDEAHFTDPASIAARGY 1797 Query 301 ISTKVELGEAAAIFMTATPPGTSDPFPESNSPISDLQTEIPDRAWNSGYEWITEYTGKTV 360 ISTKVE GEAAAIFMTATPPGT DPFP+SNSPI D + EIPDRAWNSG+EWIT+YTGKTV Sbjct 1798 ISTKVESGEAAAIFMTATPPGTIDPFPDSNSPIIDQEAEIPDRAWNSGFEWITDYTGKTV 1857 Query 361 WFVPSVKMGNEIALCLQRAGKKVVQLNRKSYETEYPKCKNDDWDFVITTDISEMGANFKA 420 WFVPSV+ GNEIA+CL +AGKKV+QLNRKSYETEY KCK +DWD+V+TTDISEMGANF A Sbjct 1858 WFVPSVRSGNEIAMCLTKAGKKVIQLNRKSYETEYQKCKGNDWDYVVTTDISEMGANFGA 1917 Query 421 SRVIDSRKSVKPTIITEGEGRVILGEPSAVTAASAAQRRGRIGRNPSQVGDEYCYGGHTN 480 RVIDSRK VKP II +GEGRV L P +TA+SAAQRRGR+GR+P+Q GDEY YGG Sbjct 1918 HRVIDSRKCVKPVIINDGEGRVQLNGPLPITASSAAQRRGRVGRDPTQSGDEYYYGGPIT 1977 Query 481 EDDSNFAHWTEARIMLDNINMPNGLIAQFYQPEREKVYTMDGEYRLRGEERKNFLELLRT 540 DD+ AHW EA+++LDNI + NGL+AQ Y+PER+KV+ DGEYRLRGE++K+F+EL+RT Sbjct 1978 NDDTGHAHWIEAKMLLDNIQLQNGLVAQLYKPERDKVFATDGEYRLRGEQKKHFVELMRT 2037 Query 541 ADLPVWLAYKVAAAGVSYHDRRWCFDGPRTNTILEDNNEVEVITKLGERKILRPRWIDAR 600 +LPVWL+YKVA AG++Y DRRWCFDGP NTILEDN EVE+ T+ GERK+LRPRW DAR Sbjct 2038 GELPVWLSYKVAEAGINYTDRRWCFDGPHNNTILEDNTEVEIWTRQGERKVLRPRWSDAR 2097 Query 601 VYSDHQALKAFKDFASGKR 619 VYSD+QAL+AFK+FA+GKR Sbjct 2098 VYSDNQALRAFKEFAAGKR 2116 >RecName: Full=Genome polyprotein; Contains: RecName: Full=Capsid protein C; AltName: Full=Core protein; Contains: RecName: Full=Protein prM; Contains: RecName: Full=Peptide pr; Contains: RecName: Full=Small envelope protein M; AltName: Full=Matrix protein; Contains: RecName: Full=Envelope protein E; Contains: RecName: Full=Non-structural protein 1; Short=NS1; Contains: RecName: Full=Non-structural protein 2A; Short=NS2A; Contains: RecName: Full=Serine protease subunit NS2B; AltName: Full=Flavivirin protease NS2B regulatory subunit; AltName: Full=Non-structural protein 2B; Contains: RecName: Full=Serine protease NS3; AltName: Full=Flavivirin protease NS3 catalytic subunit; AltName: Full=Non-structural protein 3; Contains: RecName: Full=Non-structural protein 4A; Short=NS4A; Contains: RecName: Full=Peptide 2k; Contains: RecName: Full=Non-structural protein 4B; Short=NS4B; Contains: RecName: Full=RNA-directed RNA polymerase NS5; AltName: Full=NS5 [St. Louis encephalitis virus (strain MS1-7)] Sequence ID: P09732.2 Length: 3412 Range 1: 1500 to 2117 Score:974 bits(2518), Expect:0.0, Method:Compositional matrix adjust., Identities:450/619(73%), Positives:532/619(85%), Gaps:1/619(0%) Query 1 GGVLWDTPSPKEYKKGDTTTGVYRIMTRGLLGSYQAGAGVMVEGVFHTLWHTTKGAALMS 60 GG LWD PSPK Y K +T G+YRIMTRG+LG++QAG GVM EGVFHT+WH T+GA L + Sbjct 1500 GGALWDVPSPKVYPKCETKPGIYRIMTRGILGTFQAGVGVMHEGVFHTMWHATEGAVLRN 1559 Query 61 GEGRLDPYWGSVKEDRLCYGGPWKLQHKWNGQDEVQMIVVEPGKNVKNVQTKPGVFKTPE 120 GEGRLDPY G V+ D + YGGPWKL W+G +EVQMI V PGK NVQT PGVFKTP Sbjct 1560 GEGRLDPYAGDVRNDLISYGGPWKLSATWDGTEEVQMIAVAPGKPAINVQTTPGVFKTPF 1619 Query 121 GEIGAVTLDFPTGTSGSPIVDKNGDVIGLYGNGVIMPNGSYISAIVQGERMDEPIPAGFE 180 G IGAVTLDFP GTSGSPI++K G++IGLYGNGV++ G Y+S I+QGER +EPIP + Sbjct 1620 GTIGAVTLDFPKGTSGSPIINKKGEIIGLYGNGVLIGQGEYVSGIIQGERTEEPIPDAYN 1679 Query 181 PEMLRKKQITVLDLHPGAGKTRRILPQIIKEAINRRLRTAVLAPTRVVAAEMAEALRGLP 240 EMLRK+++TVL+LHPGAGKTR++LPQIIK+ I +RLRTAVLAPTRVVA E+AEAL+GLP Sbjct 1680 EEMLRKRKLTVLELHPGAGKTRKVLPQIIKDCIQKRLRTAVLAPTRVVACEIAEALKGLP 1739 Query 241 IRYQTSAVPREHNGNEIVDVMCHATLTHRLMSPHRVPNYNLFVMDEAHFTDPASIAARGY 300 IRY T AV EH GNEIVDVMCHATLT +L++P RVPNY +++MDEAHF DPASIAARGY Sbjct 1740 IRYLTPAVRNEHQGNEIVDVMCHATLTQKLLTPTRVPNYQVYIMDEAHFIDPASIAARGY 1799 Query 301 ISTKVELGEAAAIFMTATPPGTSDPFPESNSPISDLQTEIPDRAWNSGYEWITEYTGKTV 360 ISTKVELGEAAAIFMTATPPGT+DPFP+SNSPI D++ ++PD+AW++GYEWIT +TG+TV Sbjct 1800 ISTKVELGEAAAIFMTATPPGTNDPFPDSNSPILDVEAQVPDKAWSTGYEWITNFTGRTV 1859 Query 361 WFVPSVKMGNEIALCLQRAGKKVVQLNRKSYETEYPKCKNDDWDFVITTDISEMGANFKA 420 WFVPSVK GNEIA+CLQ+AGK+V+QLNRKS++TEYPK KN++WDFV+TTDISEMGANF A Sbjct 1860 WFVPSVKSGNEIAICLQKAGKRVIQLNRKSFDTEYPKTKNNEWDFVVTTDISEMGANFGA 1919 Query 421 SRVIDSRKSVKPTIITEGEGRVILGEPSAVTAASAAQRRGRIGRNPSQVGDEYCYGGHTN 480 RVIDSRK VKP I+ E + RVIL P A+T+ASAAQRRGRIGRNPSQ+GDEY YGG TN Sbjct 1920 HRVIDSRKCVKPVIL-EDDDRVILNGPMAITSASAAQRRGRIGRNPSQIGDEYHYGGATN 1978 Query 481 EDDSNFAHWTEARIMLDNINMPNGLIAQFYQPEREKVYTMDGEYRLRGEERKNFLELLRT 540 EDD + A+WTEA+I+LDNI +PNGL+AQ YQPER+KV+TMDGE+RLRGEERKNF+EL+R Sbjct 1979 EDDHDLANWTEAKILLDNIYLPNGLVAQMYQPERDKVFTMDGEFRLRGEERKNFVELMRN 2038 Query 541 ADLPVWLAYKVAAAGVSYHDRRWCFDGPRTNTILEDNNEVEVITKLGERKILRPRWIDAR 600 DLPVWLAYKVA+ G SY DR WCF G NTILEDNNEVEV TK G+RKILRP+W+DAR Sbjct 2039 GDLPVWLAYKVASNGHSYQDRSWCFTGQTNNTILEDNNEVEVFTKTGDRKILRPKWMDAR 2098 Query 601 VYSDHQALKAFKDFASGKR 619 V D+QALK+FK+FA+GKR Sbjct 2099 VCCDYQALKSFKEFAAGKR 2117 >RecName: Full=Genome polyprotein; Contains: RecName: Full=Capsid protein C; AltName: Full=Core protein; Contains: RecName: Full=Protein prM; Contains: RecName: Full=Peptide pr; Contains: RecName: Full=Small envelope protein M; AltName: Full=Matrix protein; Contains: RecName: Full=Envelope protein E; Contains: RecName: Full=Non-structural protein 1; Short=NS1; Contains: RecName: Full=Non-structural protein 2A; Short=NS2A; Contains: RecName: Full=Serine protease subunit NS2B; AltName: Full=Flavivirin protease NS2B regulatory subunit; AltName: Full=Non-structural protein 2B; Contains: RecName: Full=Serine protease NS3; AltName: Full=Flavivirin protease NS3 catalytic subunit; AltName: Full=Non-structural protein 3; Contains: RecName: Full=Non-structural protein 4A; Short=NS4A; Contains: RecName: Full=Peptide 2k; Contains: RecName: Full=Non-structural protein 4B; Short=NS4B; Contains: RecName: Full=RNA-directed RNA polymerase NS5; AltName: Full=NS5 [Tembusu virus] Sequence ID: G1CRV4.1 Length: 3425 Range 1: 1499 to 2117 Score:968 bits(2502), Expect:0.0, Method:Compositional matrix adjust., Identities:440/619(71%), Positives:533/619(86%), Gaps:0/619(0%) Query 1 GGVLWDTPSPKEYKKGDTTTGVYRIMTRGLLGSYQAGAGVMVEGVFHTLWHTTKGAALMS 60 GGV+WD P+PKE K+ + GV+RIM RGLLG YQAG GVM EGVFHT+WH T GA + + Sbjct 1499 GGVIWDVPAPKERKRAEVGNGVFRIMARGLLGKYQAGVGVMHEGVFHTMWHVTNGAVIQA 1558 Query 61 GEGRLDPYWGSVKEDRLCYGGPWKLQHKWNGQDEVQMIVVEPGKNVKNVQTKPGVFKTPE 120 GEG L PYW SV+ D + YGGPWKL +WNG DEVQ+IVV+PGK V NVQT+PG+FKT Sbjct 1559 GEGTLVPYWASVRNDLISYGGPWKLGKQWNGVDEVQVIVVQPGKEVINVQTQPGIFKTQY 1618 Query 121 GEIGAVTLDFPTGTSGSPIVDKNGDVIGLYGNGVIMPNGSYISAIVQGERMDEPIPAGFE 180 GE+GAV+LD+PTGTSGSPI+DK G V+GLYGNG+++ +G ++S I QGE+ +E +P F+ Sbjct 1619 GEVGAVSLDYPTGTSGSPIIDKEGQVVGLYGNGILVGSGDFVSMITQGEKKEEEVPQVFD 1678 Query 181 PEMLRKKQITVLDLHPGAGKTRRILPQIIKEAINRRLRTAVLAPTRVVAAEMAEALRGLP 240 MLRK+Q+TVLDLHPG+GKTR++LP I+K AI++RLRTAVLAPTRVVAAE+AEAL+GLP Sbjct 1679 ENMLRKRQLTVLDLHPGSGKTRKVLPMILKSAIDKRLRTAVLAPTRVVAAEIAEALKGLP 1738 Query 241 IRYQTSAVPREHNGNEIVDVMCHATLTHRLMSPHRVPNYNLFVMDEAHFTDPASIAARGY 300 IRY T AV REH G EI+DVMCHATLT RL++P RVPNYNLF+MDEAHFTDPASIAARGY Sbjct 1739 IRYLTPAVKREHTGTEIIDVMCHATLTARLLTPQRVPNYNLFIMDEAHFTDPASIAARGY 1798 Query 301 ISTKVELGEAAAIFMTATPPGTSDPFPESNSPISDLQTEIPDRAWNSGYEWITEYTGKTV 360 ISTKVELGEAAAIFMTATPPGT++ FP+SNSPI+D++ +IPDRAWNSGYEWIT++ GKTV Sbjct 1799 ISTKVELGEAAAIFMTATPPGTTEAFPDSNSPITDIEEQIPDRAWNSGYEWITDFQGKTV 1858 Query 361 WFVPSVKMGNEIALCLQRAGKKVVQLNRKSYETEYPKCKNDDWDFVITTDISEMGANFKA 420 WFVPSVK GNEIA+CL +AGKKV+QLNRKS+++EYPKCK+ +WDFVITTDISEMGANF A Sbjct 1859 WFVPSVKSGNEIAVCLTKAGKKVIQLNRKSFDSEYPKCKSGEWDFVITTDISEMGANFGA 1918 Query 421 SRVIDSRKSVKPTIITEGEGRVILGEPSAVTAASAAQRRGRIGRNPSQVGDEYCYGGHTN 480 RVIDSRK +KP II +GEG V + P +T+ASAAQRRGR+GR+ +Q+GDEY Y G T+ Sbjct 1919 QRVIDSRKCIKPVIIEDGEGSVQMNGPVPITSASAAQRRGRVGRDVTQIGDEYHYSGPTS 1978 Query 481 EDDSNFAHWTEARIMLDNINMPNGLIAQFYQPEREKVYTMDGEYRLRGEERKNFLELLRT 540 EDD +FAHW EA+I+LDNINMP+GL+AQ Y PER+KV +DGE+RLR E+RK+F+E LRT Sbjct 1979 EDDHDFAHWKEAKILLDNINMPDGLVAQLYGPERDKVDAIDGEFRLRTEQRKHFVEYLRT 2038 Query 541 ADLPVWLAYKVAAAGVSYHDRRWCFDGPRTNTILEDNNEVEVITKLGERKILRPRWIDAR 600 DLPVW++YKVA AG+SY+DRRWCFDGP NT+LEDNN VE+ TK GE+KIL+PRW D R Sbjct 2039 GDLPVWISYKVAEAGISYNDRRWCFDGPLCNTVLEDNNPVELWTKSGEKKILKPRWRDGR 2098 Query 601 VYSDHQALKAFKDFASGKR 619 +++DHQALKAFKDFASGKR Sbjct 2099 LWADHQALKAFKDFASGKR 2117 >RecName: Full=Genome polyprotein; Contains: RecName: Full=Capsid protein C; AltName: Full=Core protein; Contains: RecName: Full=Protein prM; Contains: RecName: Full=Peptide pr; Contains: RecName: Full=Small envelope protein M; AltName: Full=Matrix protein; Contains: RecName: Full=Envelope protein E; Contains: RecName: Full=Non-structural protein 1; Short=NS1; Contains: RecName: Full=Non-structural protein 2A; Short=NS2A; Contains: RecName: Full=Serine protease subunit NS2B; AltName: Full=Flavivirin protease NS2B regulatory subunit; AltName: Full=Non-structural protein 2B; Contains: RecName: Full=Serine protease NS3; AltName: Full=Flavivirin protease NS3 catalytic subunit; AltName: Full=Non-structural protein 3; Contains: RecName: Full=Non-structural protein 4A; Short=NS4A; Contains: RecName: Full=Peptide 2k; Contains: RecName: Full=Non-structural protein 4B; Short=NS4B; Contains: RecName: Full=RNA-directed RNA polymerase NS5; AltName: Full=Non-structural protein 5 [Ilheus virus] Sequence ID: Q32ZD7.1 Length: 3424 Range 1: 1498 to 2115 Score:960 bits(2482), Expect:0.0, Method:Compositional matrix adjust., Identities:439/619(71%), Positives:526/619(84%), Gaps:1/619(0%) Query 1 GGVLWDTPSPKEYKKGDTTTGVYRIMTRGLLGSYQAGAGVMVEGVFHTLWHTTKGAALMS 60 GGV+WD P+PK++ K + GVYR+MT G+LG YQ+G GVM +GVFHT+WH T+GAAL + Sbjct 1498 GGVMWDVPAPKQFGKTELKPGVYRVMTMGILGRYQSGVGVMWDGVFHTMWHVTQGAALRN 1557 Query 61 GEGRLDPYWGSVKEDRLCYGGPWKLQHKWNGQDEVQMIVVEPGKNVKNVQTKPGVFKTPE 120 GEGRL+P WGSV++D + YGG WKL WNG +EVQMI VEPGK KN QTKPGVFKTP Sbjct 1558 GEGRLNPTWGSVRDDLISYGGKWKLSATWNGSEEVQMIAVEPGKAAKNYQTKPGVFKTPA 1617 Query 121 GEIGAVTLDFPTGTSGSPIVDKNGDVIGLYGNGVIMPNGSYISAIVQGERMDEPIPAGFE 180 GEIGA+TLDFP GTSGSPI++K G++ GLYGNG+++ G+Y+SAI QGER +E P F Sbjct 1618 GEIGAITLDFPKGTSGSPIINKAGEITGLYGNGIVLERGAYVSAITQGERQEEETPEAFT 1677 Query 181 PEMLRKKQITVLDLHPGAGKTRRILPQIIKEAINRRLRTAVLAPTRVVAAEMAEALRGLP 240 P+ML+K+++T+LDLHPGAGKTRR++PQI++E + RLRT +L PTRVVAAEMAEALRGLP Sbjct 1678 PDMLKKRRLTILDLHPGAGKTRRVIPQIVRECVKARLRTVILVPTRVVAAEMAEALRGLP 1737 Query 241 IRYQTSAVPREHNGNEIVDVMCHATLTHRLMSPHRVPNYNLFVMDEAHFTDPASIAARGY 300 IRYQTSAV EH+GNEIVD M HATLT RL++P +VPNYN+FVMDEAHFTDPASIAARGY Sbjct 1738 IRYQTSAVKAEHSGNEIVDAMRHATLTQRLLTPAKVPNYNVFVMDEAHFTDPASIAARGY 1797 Query 301 ISTKVELGEAAAIFMTATPPGTSDPFPESNSPISDLQTEIPDRAWNSGYEWITEYTGKTV 360 ISTKVELGEAAAIFMTATPPGT+DPFP+SN+PI D + EIPDRAWNSG+EWITEYTGKTV Sbjct 1798 ISTKVELGEAAAIFMTATPPGTTDPFPDSNAPIIDQEAEIPDRAWNSGFEWITEYTGKTV 1857 Query 361 WFVPSVKMGNEIALCLQRAGKKVVQLNRKSYETEYPKCKNDDWDFVITTDISEMGANFKA 420 WFVPSV+MGNEIA+CL +AGKKV+QLNRKSY++EY KCK +DWDFVITTDISEMGANF A Sbjct 1858 WFVPSVRMGNEIAMCLTKAGKKVIQLNRKSYDSEYQKCKGNDWDFVITTDISEMGANFGA 1917 Query 421 SRVIDSRKSVKPTIITEGEGRVILGEPSAVTAASAAQRRGRIGRNPSQVGDEYCYGGHTN 480 RVIDSRK VKP I+ +G+ RV++ P+ +T ASAAQRRGRIGR+P+Q GDEY YGG T Sbjct 1918 HRVIDSRKCVKPVIL-DGDDRVLMNGPAPITPASAAQRRGRIGRDPTQSGDEYFYGGPTT 1976 Query 481 EDDSNFAHWTEARIMLDNINMPNGLIAQFYQPEREKVYTMDGEYRLRGEERKNFLELLRT 540 DD+ AHW EA+I+LDNI + NGL+AQ Y PER+KV+T DGEYRLR E++KNF+E LRT Sbjct 1977 TDDTGHAHWIEAKILLDNIQLQNGLVAQLYGPERDKVFTTDGEYRLRSEQKKNFVEFLRT 2036 Query 541 ADLPVWLAYKVAAAGVSYHDRRWCFDGPRTNTILEDNNEVEVITKLGERKILRPRWIDAR 600 DLPVWL+YKVA AG +Y DRRWCFDGP NTILE + EV T+ GE++ILRPRW DAR Sbjct 2037 GDLPVWLSYKVAEAGYAYTDRRWCFDGPANNTILEVRGDPEVWTRQGEKRILRPRWSDAR 2096 Query 601 VYSDHQALKAFKDFASGKR 619 VY D+QAL++FK+FA+GKR Sbjct 2097 VYCDNQALRSFKEFAAGKR 2115 >RecName: Full=Genome polyprotein; Contains: RecName: Full=Capsid protein C; AltName: Full=Capsid protein; AltName: Full=Core protein; Contains: RecName: Full=Protein prM; AltName: Full=Precursor membrane protein; Contains: RecName: Full=Peptide pr; AltName: Full=Peptide precursor; Contains: RecName: Full=Small envelope protein M; AltName: Full=Matrix protein; Contains: RecName: Full=Envelope protein E; Contains: RecName: Full=Non-structural protein 1; Short=NS1; Contains: RecName: Full=Non-structural protein 2A; Short=NS2A; Contains: RecName: Full=Serine protease subunit NS2B; AltName: Full=Flavivirin protease NS2B regulatory subunit; AltName: Full=Non-structural protein 2B; Contains: RecName: Full=Serine protease NS3; AltName: Full=Flavivirin protease NS3 catalytic subunit; AltName: Full=Non-structural protein 3; Contains: RecName: Full=Non-structural protein 4A; Short=NS4A; Contains: RecName: Full=Peptide 2k; Contains: RecName: Full=Non-structural protein 4B; Short=NS4B; Contains: RecName: Full=RNA-directed RNA polymerase NS5; AltName: Full=NS5 [Zika virus] Sequence ID: Q32ZE1.1 Length: 3419 Range 1: 1500 to 2115 Score:905 bits(2339), Expect:0.0, Method:Compositional matrix adjust., Identities:420/618(68%), Positives:513/618(83%), Gaps:2/618(0%) Query 2 GVLWDTPSPKEYKKGDTTTGVYRIMTRGLLGSYQAGAGVMVEGVFHTLWHTTKGAALMSG 61 G LWD P+PKE KKG+TT GVYR+MTR LLGS Q G GVM EGVFHT+WH TKGAAL SG Sbjct 1500 GALWDVPAPKEVKKGETTDGVYRVMTRRLLGSTQVGVGVMQEGVFHTMWHVTKGAALRSG 1559 Query 62 EGRLDPYWGSVKEDRLCYGGPWKLQHKWNGQDEVQMIVVEPGKNVKNVQTKPGVFKTPEG 121 EGRLDPYWG VK+D + Y GPWKL W+G EVQ++ V PG+ +N+QT PG+FKT +G Sbjct 1560 EGRLDPYWGDVKQDLVSYCGPWKLDAAWDGLSEVQLLAVPPGERARNIQTLPGIFKTKDG 1619 Query 122 EIGAVTLDFPTGTSGSPIVDKNGDVIGLYGNGVIMPNGSYISAIVQGERMDEPIPAGFEP 181 +IGAV LD+P GTSGSPI+DK G VIGLYGNGV++ NGSY+SAI QG+R +E FEP Sbjct 1620 DIGAVALDYPAGTSGSPILDKCGRVIGLYGNGVVIKNGSYVSAITQGKREEETPVECFEP 1679 Query 182 EMLRKKQITVLDLHPGAGKTRRILPQIIKEAINRRLRTAVLAPTRVVAAEMAEALRGLPI 241 ML+KKQ+TVLDLHPGAGKTRR+LP+I++EAI +RLRT +LAPTRVVAAEM EALRGLP+ Sbjct 1680 SMLKKKQLTVLDLHPGAGKTRRVLPEIVREAIKKRLRTVILAPTRVVAAEMEEALRGLPV 1739 Query 242 RYQTSAVPREHNGNEIVDVMCHATLTHRLMSPHRVPNYNLFVMDEAHFTDPASIAARGYI 301 RY T+AV H+G EIVD+MCHAT T RL+ P RVPNYNL +MDEAHFTDP+SIAARGYI Sbjct 1740 RYMTTAVNVTHSGTEIVDLMCHATFTSRLLQPIRVPNYNLNIMDEAHFTDPSSIAARGYI 1799 Query 302 STKVELGEAAAIFMTATPPGTSDPFPESNSPISDLQTEIPDRAWNSGYEWITEYTGKTVW 361 ST+VE+GEAAAIFMTATPPGT D FP+SNSPI D + E+P+RAW+SG++W+T+++GKTVW Sbjct 1800 STRVEMGEAAAIFMTATPPGTRDAFPDSNSPIMDTEVEVPERAWSSGFDWVTDHSGKTVW 1859 Query 362 FVPSVKMGNEIALCLQRAGKKVVQLNRKSYETEYPKCKNDDWDFVITTDISEMGANFKAS 421 FVPSV+ GNEIA CL +AGK+V+QL+RK++ETE+ K KN +WDFVITTDISEMGANFKA Sbjct 1860 FVPSVRNGNEIAACLTKAGKRVIQLSRKTFETEFQKTKNQEWDFVITTDISEMGANFKAD 1919 Query 422 RVIDSRKSVKPTIITEGEGRVILGEPSAVTAASAAQRRGRIGRNPSQVGDEYCYGGHTNE 481 RVIDSR+ +KP I+ +GE RVIL P VT ASAAQRRGRIGRNP++ GDEY YGG E Sbjct 1920 RVIDSRRCLKPVIL-DGE-RVILAGPMPVTHASAAQRRGRIGRNPNKPGDEYMYGGGCAE 1977 Query 482 DDSNFAHWTEARIMLDNINMPNGLIAQFYQPEREKVYTMDGEYRLRGEERKNFLELLRTA 541 D AHW EAR++LDNI + +GLIA Y+PE +KV ++GE++LR E+RK F+EL++ Sbjct 1978 TDEGHAHWLEARMLLDNIYLQDGLIASLYRPEADKVAAIEGEFKLRTEQRKTFVELMKRG 2037 Query 542 DLPVWLAYKVAAAGVSYHDRRWCFDGPRTNTILEDNNEVEVITKLGERKILRPRWIDARV 601 DLPVWLAY+VA+AG++Y DRRWCFDG NTI+ED+ EV TK GE+++L+PRW+DARV Sbjct 2038 DLPVWLAYQVASAGITYTDRRWCFDGTTNNTIMEDSVPAEVWTKYGEKRVLKPRWMDARV 2097 Query 602 YSDHQALKAFKDFASGKR 619 SDH ALK+FK+FA+GKR Sbjct 2098 CSDHAALKSFKEFAAGKR 2115 >RecName: Full=Genome polyprotein; Contains: RecName: Full=Capsid protein C; AltName: Full=Capsid protein; AltName: Full=Core protein; Contains: RecName: Full=Protein prM; AltName: Full=Precursor membrane protein; Contains: RecName: Full=Peptide pr; AltName: Full=Peptide precursor; Contains: RecName: Full=Small envelope protein M; AltName: Full=Matrix protein; Contains: RecName: Full=Envelope protein E; Contains: RecName: Full=Non-structural protein 1; Short=NS1; Contains: RecName: Full=Non-structural protein 2A; Short=NS2A; Contains: RecName: Full=Serine protease subunit NS2B; AltName: Full=Flavivirin protease NS2B regulatory subunit; AltName: Full=Non-structural protein 2B; Contains: RecName: Full=Serine protease NS3; AltName: Full=Flavivirin protease NS3 catalytic subunit; AltName: Full=Non-structural protein 3; Contains: RecName: Full=Non-structural protein 4A; Short=NS4A; Contains: RecName: Full=Peptide 2k; Contains: RecName: Full=Non-structural protein 4B; Short=NS4B; Contains: RecName: Full=RNA-directed RNA polymerase NS5; AltName: Full=NS5 [Zika virus ZIKV/Human/Cambodia/FSS13025/2010] Sequence ID: A0A142I5B9.1 Length: 3423 Range 1: 1504 to 2119 Score:903 bits(2333), Expect:0.0, Method:Compositional matrix adjust., Identities:416/618(67%), Positives:513/618(83%), Gaps:2/618(0%) Query 2 GVLWDTPSPKEYKKGDTTTGVYRIMTRGLLGSYQAGAGVMVEGVFHTLWHTTKGAALMSG 61 G LWD P+PKE KKG+TT GVYR+MTR LLGS Q G GVM EGVFHT+WH TKG+AL SG Sbjct 1504 GALWDVPAPKEVKKGETTDGVYRVMTRRLLGSTQVGVGVMQEGVFHTMWHVTKGSALRSG 1563 Query 62 EGRLDPYWGSVKEDRLCYGGPWKLQHKWNGQDEVQMIVVEPGKNVKNVQTKPGVFKTPEG 121 EGRLDPYWG VK+D + Y GPWKL W+G EVQ++ V PG+ +N+QT PG+FKT +G Sbjct 1564 EGRLDPYWGDVKQDLVSYCGPWKLDAAWDGHSEVQLLAVPPGERARNIQTLPGIFKTKDG 1623 Query 122 EIGAVTLDFPTGTSGSPIVDKNGDVIGLYGNGVIMPNGSYISAIVQGERMDEPIPAGFEP 181 +IGAV LD+P GTSGSPI+DK G VIGLYGNGV++ NGSY+SAI QG R +E FEP Sbjct 1624 DIGAVALDYPAGTSGSPILDKCGRVIGLYGNGVVIKNGSYVSAITQGRREEETPVECFEP 1683 Query 182 EMLRKKQITVLDLHPGAGKTRRILPQIIKEAINRRLRTAVLAPTRVVAAEMAEALRGLPI 241 ML+KKQ+TVLDLHPGAGKTRR+LP+I++EAI RLRT +LAPTRVVAAEM EALRGLP+ Sbjct 1684 SMLKKKQLTVLDLHPGAGKTRRVLPEIVREAIKTRLRTVILAPTRVVAAEMEEALRGLPV 1743 Query 242 RYQTSAVPREHNGNEIVDVMCHATLTHRLMSPHRVPNYNLFVMDEAHFTDPASIAARGYI 301 RY T+AV H+G EIVD+MCHAT T RL+ P RVPNYNL++MDEAHFTDP+SIAARGYI Sbjct 1744 RYMTTAVNVTHSGTEIVDLMCHATFTSRLLQPIRVPNYNLYIMDEAHFTDPSSIAARGYI 1803 Query 302 STKVELGEAAAIFMTATPPGTSDPFPESNSPISDLQTEIPDRAWNSGYEWITEYTGKTVW 361 ST+VE+GEAAAIFMTATPPGT D FP+SNSPI D + E+P+RAW+SG++W+T+++GKTVW Sbjct 1804 STRVEMGEAAAIFMTATPPGTRDAFPDSNSPIMDTEVEVPERAWSSGFDWVTDHSGKTVW 1863 Query 362 FVPSVKMGNEIALCLQRAGKKVVQLNRKSYETEYPKCKNDDWDFVITTDISEMGANFKAS 421 FVPSV+ GNEIA CL +AGK+V+QL+RK++ETE+ K K+ +WDFV+TTDISEMGANFKA Sbjct 1864 FVPSVRNGNEIAACLTKAGKRVIQLSRKTFETEFQKTKHQEWDFVVTTDISEMGANFKAD 1923 Query 422 RVIDSRKSVKPTIITEGEGRVILGEPSAVTAASAAQRRGRIGRNPSQVGDEYCYGGHTNE 481 RVIDSR+ +KP I+ +GE RVIL P VT ASAAQRRGRIGRNP++ GDEY YGG E Sbjct 1924 RVIDSRRCLKPVIL-DGE-RVILAGPMPVTHASAAQRRGRIGRNPNKPGDEYLYGGGCAE 1981 Query 482 DDSNFAHWTEARIMLDNINMPNGLIAQFYQPEREKVYTMDGEYRLRGEERKNFLELLRTA 541 D + AHW EAR++LDNI + +GLIA Y+PE +KV ++GE++LR E+RK F+EL++ Sbjct 1982 TDEDHAHWLEARMLLDNIYLQDGLIASLYRPEADKVAAIEGEFKLRTEQRKTFVELMKRG 2041 Query 542 DLPVWLAYKVAAAGVSYHDRRWCFDGPRTNTILEDNNEVEVITKLGERKILRPRWIDARV 601 DLPVWLAY+VA+AG++Y DRRWCFDG NTI+ED+ EV T+ GE+++L+PRW+DARV Sbjct 2042 DLPVWLAYQVASAGITYTDRRWCFDGTTNNTIMEDSVPAEVWTRYGEKRVLKPRWMDARV 2101 Query 602 YSDHQALKAFKDFASGKR 619 SDH ALK+FK+FA+GKR Sbjct 2102 CSDHAALKSFKEFAAGKR 2119 >RecName: Full=Genome polyprotein; Contains: RecName: Full=Capsid protein C; AltName: Full=Capsid protein; AltName: Full=Core protein; Contains: RecName: Full=Protein prM; AltName: Full=Precursor membrane protein; Contains: RecName: Full=Peptide pr; AltName: Full=Peptide precursor; Contains: RecName: Full=Small envelope protein M; AltName: Full=Matrix protein; Contains: RecName: Full=Envelope protein E; Contains: RecName: Full=Non-structural protein 1; Short=NS1; Contains: RecName: Full=Non-structural protein 2A; Short=NS2A; Contains: RecName: Full=Serine protease subunit NS2B; AltName: Full=Flavivirin protease NS2B regulatory subunit; AltName: Full=Non-structural protein 2B; Contains: RecName: Full=Serine protease NS3; AltName: Full=Flavivirin protease NS3 catalytic subunit; AltName: Full=Non-structural protein 3; Contains: RecName: Full=Non-structural protein 4A; Short=NS4A; Contains: RecName: Full=Peptide 2k; Contains: RecName: Full=Non-structural protein 4B; Short=NS4B; Contains: RecName: Full=RNA-directed RNA polymerase NS5; AltName: Full=NS5 [Zika virus ZIKV/H. sapiens/FrenchPolynesia/10087PF/2013] Sequence ID: A0A024B7W1.1 Length: 3423 Range 1: 1504 to 2119 Score:902 bits(2331), Expect:0.0, Method:Compositional matrix adjust., Identities:416/618(67%), Positives:513/618(83%), Gaps:2/618(0%) Query 2 GVLWDTPSPKEYKKGDTTTGVYRIMTRGLLGSYQAGAGVMVEGVFHTLWHTTKGAALMSG 61 G LWD P+PKE KKG+TT GVYR+MTR LLGS Q G GVM EGVFHT+WH TKG+AL SG Sbjct 1504 GALWDVPAPKEVKKGETTDGVYRVMTRRLLGSTQVGVGVMQEGVFHTMWHVTKGSALRSG 1563 Query 62 EGRLDPYWGSVKEDRLCYGGPWKLQHKWNGQDEVQMIVVEPGKNVKNVQTKPGVFKTPEG 121 EGRLDPYWG VK+D + Y GPWKL W+G EVQ++ V PG+ +N+QT PG+FKT +G Sbjct 1564 EGRLDPYWGDVKQDLVSYCGPWKLDAAWDGHSEVQLLAVPPGERARNIQTLPGIFKTKDG 1623 Query 122 EIGAVTLDFPTGTSGSPIVDKNGDVIGLYGNGVIMPNGSYISAIVQGERMDEPIPAGFEP 181 +IGAV LD+P GTSGSPI+DK G VIGLYGNGV++ NGSY+SAI QG R +E FEP Sbjct 1624 DIGAVALDYPAGTSGSPILDKCGRVIGLYGNGVVIKNGSYVSAITQGRREEETPVECFEP 1683 Query 182 EMLRKKQITVLDLHPGAGKTRRILPQIIKEAINRRLRTAVLAPTRVVAAEMAEALRGLPI 241 ML+KKQ+TVLDLHPGAGKTRR+LP+I++EAI RLRT +LAPTRVVAAEM EALRGLP+ Sbjct 1684 SMLKKKQLTVLDLHPGAGKTRRVLPEIVREAIKTRLRTVILAPTRVVAAEMEEALRGLPV 1743 Query 242 RYQTSAVPREHNGNEIVDVMCHATLTHRLMSPHRVPNYNLFVMDEAHFTDPASIAARGYI 301 RY T+AV H+G EIVD+MCHAT T RL+ P RVPNYNL++MDEAHFTDP+SIAARGYI Sbjct 1744 RYMTTAVNVTHSGTEIVDLMCHATFTSRLLQPIRVPNYNLYIMDEAHFTDPSSIAARGYI 1803 Query 302 STKVELGEAAAIFMTATPPGTSDPFPESNSPISDLQTEIPDRAWNSGYEWITEYTGKTVW 361 ST+VE+GEAAAIFMTATPPGT D FP+SNSPI D + E+P+RAW+SG++W+T+++GKTVW Sbjct 1804 STRVEMGEAAAIFMTATPPGTRDAFPDSNSPIMDTEVEVPERAWSSGFDWVTDHSGKTVW 1863 Query 362 FVPSVKMGNEIALCLQRAGKKVVQLNRKSYETEYPKCKNDDWDFVITTDISEMGANFKAS 421 FVPSV+ GNEIA CL +AGK+V+QL+RK++ETE+ K K+ +WDFV+TTDISEMGANFKA Sbjct 1864 FVPSVRNGNEIAACLTKAGKRVIQLSRKTFETEFQKTKHQEWDFVVTTDISEMGANFKAD 1923 Query 422 RVIDSRKSVKPTIITEGEGRVILGEPSAVTAASAAQRRGRIGRNPSQVGDEYCYGGHTNE 481 RVIDSR+ +KP I+ +GE RVIL P VT ASAAQRRGRIGRNP++ GDEY YGG E Sbjct 1924 RVIDSRRCLKPVIL-DGE-RVILAGPMPVTHASAAQRRGRIGRNPNKPGDEYLYGGGCAE 1981 Query 482 DDSNFAHWTEARIMLDNINMPNGLIAQFYQPEREKVYTMDGEYRLRGEERKNFLELLRTA 541 D + AHW EAR++LDNI + +GLIA Y+PE +KV ++GE++LR E+RK F+EL++ Sbjct 1982 TDEDHAHWLEARMLLDNIYLQDGLIASLYRPEADKVAAIEGEFKLRTEQRKTFVELMKRG 2041 Query 542 DLPVWLAYKVAAAGVSYHDRRWCFDGPRTNTILEDNNEVEVITKLGERKILRPRWIDARV 601 DLPVWLAY+VA+AG++Y DRRWCFDG NTI+ED+ EV T+ GE+++L+PRW+DARV Sbjct 2042 DLPVWLAYQVASAGITYTDRRWCFDGTTNNTIMEDSVPAEVWTRHGEKRVLKPRWMDARV 2101 Query 602 YSDHQALKAFKDFASGKR 619 SDH ALK+FK+FA+GKR Sbjct 2102 CSDHAALKSFKEFAAGKR 2119 >RecName: Full=Genome polyprotein; Contains: RecName: Full=Capsid protein C; AltName: Full=Core protein; Contains: RecName: Full=Protein prM; Contains: RecName: Full=Peptide pr; Contains: RecName: Full=Small envelope protein M; AltName: Full=Matrix protein; Contains: RecName: Full=Envelope protein E; Contains: RecName: Full=Non-structural protein 1; Short=NS1; Contains: RecName: Full=Non-structural protein 2A; Short=NS2A; Contains: RecName: Full=Serine protease subunit NS2B; AltName: Full=Flavivirin protease NS2B regulatory subunit; AltName: Full=Non-structural protein 2B; Contains: RecName: Full=Serine protease NS3; AltName: Full=Flavivirin protease NS3 catalytic subunit; AltName: Full=Non-structural protein 3; Contains: RecName: Full=Non-structural protein 4A; Short=NS4A; Contains: RecName: Full=Peptide 2k; Contains: RecName: Full=Non-structural protein 4B; Short=NS4B; Contains: RecName: Full=RNA-directed RNA polymerase NS5; AltName: Full=NS5 [Bussuquara virus] Sequence ID: Q32ZE0.1 Length: 3429 Range 1: 1504 to 2121 Score:896 bits(2316), Expect:0.0, Method:Compositional matrix adjust., Identities:408/620(66%), Positives:508/620(81%), Gaps:3/620(0%) Query 1 GGVLWDTPSPKEYKKGDTTTGVYRIMTRGLLGSYQAGAGVMVEGVFHTLWHTTKGAALMS 60 G LWD P+P+E KKG T GVYRI+ L G Q G GVM EGVFHT+WH T+GAAL S Sbjct 1504 AGALWDIPAPREVKKGSTENGVYRILANRLFGKTQVGVGVMHEGVFHTMWHVTRGAALKS 1563 Query 61 GEGRLDPYWGSVKEDRLCYGGPWKLQHKWNGQDEVQMIVVEPGKNVKNVQTKPGVFKTPE 120 GEGRLDPYWG VK+D + YGGPWKL+ +W+G EVQ+I V P + KNVQT PGVFKTP Sbjct 1564 GEGRLDPYWGDVKKDLISYGGPWKLEGRWDGVSEVQLIAVPPKEKAKNVQTTPGVFKTPH 1623 Query 121 GEIGAVTLDFPTGTSGSPIVDKNGDVIGLYGNGVIMPNGSYISAIVQGERMDEP-IPAGF 179 GEIGA+ LDFP G+SGSPI++K G+VIGLYGNG++M + +Y S+I Q E DEP P Sbjct 1624 GEIGAIVLDFPAGSSGSPIINKLGEVIGLYGNGLMMGD-AYASSIAQAEVEDEPDTPNCL 1682 Query 180 EPEMLRKKQITVLDLHPGAGKTRRILPQIIKEAINRRLRTAVLAPTRVVAAEMAEALRGL 239 P++ KK++TVLDLHPGAGKTR++LP++++EA+ +RLRT VLAPTRVVAAEMAEAL+G+ Sbjct 1683 PPDVTHKKKLTVLDLHPGAGKTRKVLPKLLQEALEKRLRTVVLAPTRVVAAEMAEALKGM 1742 Query 240 PIRYQTSAVPREHNGNEIVDVMCHATLTHRLMSPHRVPNYNLFVMDEAHFTDPASIAARG 299 PIRYQT+AV H+GNEI+D+MCHAT T RLM PHRVPNYNL++MDEAHFTDPASIAARG Sbjct 1743 PIRYQTAAVTSSHSGNEIIDLMCHATFTSRLMQPHRVPNYNLYIMDEAHFTDPASIAARG 1802 Query 300 YISTKVELGEAAAIFMTATPPGTSDPFPESNSPISDLQTEIPDRAWNSGYEWITEYTGKT 359 +I+TKV LGEAAA+FMTATPPG+ +PFP SN+PI+D + +IPD+AW++G++WITEY GKT Sbjct 1803 FIATKVSLGEAAAVFMTATPPGSDNPFPASNAPITDTEAQIPDKAWSTGFDWITEYGGKT 1862 Query 360 VWFVPSVKMGNEIALCLQRAGKKVVQLNRKSYETEYPKCKNDDWDFVITTDISEMGANFK 419 VWFVPSV+MGNEIA CL +A KKV+QL+R+++ TEYPKCK DWDFV+TTDISEMGANFK Sbjct 1863 VWFVPSVRMGNEIAACLTKAKKKVIQLSRRTFNTEYPKCKQGDWDFVVTTDISEMGANFK 1922 Query 420 ASRVIDSRKSVKPTIITEGEGRVILGEPSAVTAASAAQRRGRIGRNPSQVGDEYCYGGHT 479 A+RVIDSR+++KP+I+ + E RV+L P+ ++ ASAAQRRGR+GRNP+Q+GDEY + G T Sbjct 1923 ATRVIDSRRAIKPSIMQDQEERVVLSGPTPISPASAAQRRGRVGRNPNQLGDEYVFSGLT 1982 Query 480 NEDDSNFAHWTEARIMLDNINMPNGLIAQFYQPEREKVYTMDGEYRLRGEERKNFLELLR 539 +D A WTEAR++LDNI+M NGLIAQ Y PE++K + DGE++LR +ER FLE L+ Sbjct 1983 QANDEGNACWTEARMLLDNIHMQNGLIAQLYGPEQDKCFATDGEFKLREKERATFLEFLK 2042 Query 540 TADLPVWLAYKVAAAGVSYHDRRWCFDGPRTNTILEDNNEVEVITKLGERKILRPRWIDA 599 ADLPVWL++K A++GV YHDR+WCFDGP N +LEDN VE+ TK GERK L+PRW DA Sbjct 2043 -ADLPVWLSFKAASSGVQYHDRKWCFDGPDNNLVLEDNVPVEIWTKSGERKKLKPRWSDA 2101 Query 600 RVYSDHQALKAFKDFASGKR 619 R Y DH AL AFK+FA G+R Sbjct 2102 RTYCDHGALTAFKEFAGGRR 2121 >RecName: Full=Genome polyprotein; Contains: RecName: Full=Capsid protein C; AltName: Full=Core protein; Contains: RecName: Full=Protein prM; Contains: RecName: Full=Peptide pr; Contains: RecName: Full=Small envelope protein M; AltName: Full=Matrix protein; Contains: RecName: Full=Envelope protein E; Contains: RecName: Full=Non-structural protein 1; Short=NS1; Contains: RecName: Full=Non-structural protein 2A; Short=NS2A; Contains: RecName: Full=Serine protease subunit NS2B; AltName: Full=Flavivirin protease NS2B regulatory subunit; AltName: Full=Non-structural protein 2B; Contains: RecName: Full=Serine protease NS3; AltName: Full=Flavivirin protease NS3 catalytic subunit; AltName: Full=Non-structural protein 3; Contains: RecName: Full=Non-structural protein 4A; Short=NS4A; Contains: RecName: Full=Peptide 2k; Contains: RecName: Full=Non-structural protein 4B; Short=NS4B; Contains: RecName: Full=RNA-directed RNA polymerase NS5; AltName: Full=Non-structural protein 5 [Dengue virus 4 Thailand/0348/1991] Sequence ID: Q2YHF0.1 Length: 3387 Range 1: 1476 to 2092 Score:865 bits(2235), Expect:0.0, Method:Compositional matrix adjust., Identities:397/618(64%), Positives:496/618(80%), Gaps:1/618(0%) Query 2 GVLWDTPSPKEYKKGDTTTGVYRIMTRGLLGSYQAGAGVMVEGVFHTLWHTTKGAALMSG 61 G LWD PSP +K T GVYRIM RGL G Q G G+ +EGVFHT+WH T+G+ + Sbjct 1476 GALWDVPSPAAAQKATLTEGVYRIMQRGLFGKTQVGVGIHMEGVFHTMWHVTRGSVICHE 1535 Query 62 EGRLDPYWGSVKEDRLCYGGPWKLQHKWNGQDEVQMIVVEPGKNVKNVQTKPGVFKTPEG 121 GRL+P W V+ D + YGG W+L KW+ +++VQ++ +EPGKN K+VQTKPG+FKT G Sbjct 1536 SGRLEPSWADVRNDMISYGGGWRLGDKWDKEEDVQVLAIEPGKNPKHVQTKPGLFKTLTG 1595 Query 122 EIGAVTLDFPTGTSGSPIVDKNGDVIGLYGNGVIMPNGSYISAIVQGERMDEPIPAGFEP 181 EIGAVTLDF GTSGSPI+++ G VIGLYGNGV+ +G Y+SAI Q ER+ EP + Sbjct 1596 EIGAVTLDFKPGTSGSPIINRKGKVIGLYGNGVVTKSGDYVSAITQAERIGEP-DYEVDE 1654 Query 182 EMLRKKQITVLDLHPGAGKTRRILPQIIKEAINRRLRTAVLAPTRVVAAEMAEALRGLPI 241 ++ RKK++T++DLHPGAGKT+RILP I++EA+ RRLRT +LAPTRVVAAEM EALRGLPI Sbjct 1655 DIFRKKRLTIMDLHPGAGKTKRILPSIVREALKRRLRTLILAPTRVVAAEMEEALRGLPI 1714 Query 242 RYQTSAVPREHNGNEIVDVMCHATLTHRLMSPHRVPNYNLFVMDEAHFTDPASIAARGYI 301 RYQT AV EH G EIVD+MCHAT T RL+S RVPNYNL VMDEAHFTDP+S+AARGYI Sbjct 1715 RYQTPAVKSEHTGREIVDLMCHATFTTRLLSSTRVPNYNLIVMDEAHFTDPSSVAARGYI 1774 Query 302 STKVELGEAAAIFMTATPPGTSDPFPESNSPISDLQTEIPDRAWNSGYEWITEYTGKTVW 361 ST+VE+GEAAAIFMTATPPGT+DPFP+SNSPI D++ EIP+R+WN+G++WIT+Y GKTVW Sbjct 1775 STRVEMGEAAAIFMTATPPGTTDPFPQSNSPIEDIEREIPERSWNTGFDWITDYQGKTVW 1834 Query 362 FVPSVKMGNEIALCLQRAGKKVVQLNRKSYETEYPKCKNDDWDFVITTDISEMGANFKAS 421 FVPS+K GN+IA CL+++GKKV+QL+RK+++TEYPK K DWDFV+TTDISEMGANF+A Sbjct 1835 FVPSIKAGNDIANCLRKSGKKVIQLSRKTFDTEYPKTKLTDWDFVVTTDISEMGANFRAG 1894 Query 422 RVIDSRKSVKPTIITEGEGRVILGEPSAVTAASAAQRRGRIGRNPSQVGDEYCYGGHTNE 481 RVID R+ +KP I+T+G RVIL P VT ASAAQRRGRIGRNP+Q D+Y + G Sbjct 1895 RVIDPRRCLKPVILTDGPERVILAGPIPVTPASAAQRRGRIGRNPAQEDDQYVFSGDPLR 1954 Query 482 DDSNFAHWTEARIMLDNINMPNGLIAQFYQPEREKVYTMDGEYRLRGEERKNFLELLRTA 541 +D + AHWTEA+++LDNI P G+I + PEREK +DGE+RLRGE+RK F+EL+R Sbjct 1955 NDEDHAHWTEAKMLLDNIYTPEGIIPTLFGPEREKTQAIDGEFRLRGEQRKTFVELMRRG 2014 Query 542 DLPVWLAYKVAAAGVSYHDRRWCFDGPRTNTILEDNNEVEVITKLGERKILRPRWIDARV 601 DLPVWL+YKVA+AG+SY DR WCF G R N ILE+N EVE+ T+ GE+K LRP+W+DARV Sbjct 2015 DLPVWLSYKVASAGISYKDREWCFTGERNNQILEENMEVEIWTREGEKKKLRPKWLDARV 2074 Query 602 YSDHQALKAFKDFASGKR 619 Y+D ALK FK+FASG++ Sbjct 2075 YADPMALKDFKEFASGRK 2092 >RecName: Full=Genome polyprotein; Contains: RecName: Full=Capsid protein C; AltName: Full=Core protein; Contains: RecName: Full=Protein prM; Contains: RecName: Full=Peptide pr; Contains: RecName: Full=Small envelope protein M; AltName: Full=Matrix protein; Contains: RecName: Full=Envelope protein E; Contains: RecName: Full=Non-structural protein 1; Short=NS1; Contains: RecName: Full=Non-structural protein 2A; Short=NS2A; Contains: RecName: Full=Serine protease subunit NS2B; AltName: Full=Flavivirin protease NS2B regulatory subunit; AltName: Full=Non-structural protein 2B; Contains: RecName: Full=Serine protease NS3; AltName: Full=Flavivirin protease NS3 catalytic subunit; AltName: Full=Non-structural protein 3; Contains: RecName: Full=Non-structural protein 4A; Short=NS4A; Contains: RecName: Full=Peptide 2k; Contains: RecName: Full=Non-structural protein 4B; Short=NS4B; Contains: RecName: Full=RNA-directed RNA polymerase NS5; AltName: Full=Non-structural protein 5 [Dengue virus 4 Thailand/0476/1997] Sequence ID: Q2YHF2.1 Length: 3387 Range 1: 1476 to 2092 Score:865 bits(2234), Expect:0.0, Method:Compositional matrix adjust., Identities:397/618(64%), Positives:497/618(80%), Gaps:1/618(0%) Query 2 GVLWDTPSPKEYKKGDTTTGVYRIMTRGLLGSYQAGAGVMVEGVFHTLWHTTKGAALMSG 61 G LWD PSP +K T GVYRIM RGLLG Q G G+ +EGVFHT+WH T+G+ + Sbjct 1476 GALWDVPSPATAQKATLTEGVYRIMQRGLLGRTQVGVGIHMEGVFHTMWHVTRGSVICHE 1535 Query 62 EGRLDPYWGSVKEDRLCYGGPWKLQHKWNGQDEVQMIVVEPGKNVKNVQTKPGVFKTPEG 121 GRL+P W V+ D + YGG W+L KW+ +++VQ++ +EPGKN K+VQTKPG+FKT G Sbjct 1536 TGRLEPSWADVRNDMISYGGGWRLGDKWDKEEDVQVLAIEPGKNPKHVQTKPGLFKTLTG 1595 Query 122 EIGAVTLDFPTGTSGSPIVDKNGDVIGLYGNGVIMPNGSYISAIVQGERMDEPIPAGFEP 181 EIGAVTLDF GTSGSPI++K G VIGLYGNGV+ +G Y+SAI Q ER+ EP + Sbjct 1596 EIGAVTLDFKPGTSGSPIINKKGKVIGLYGNGVVTKSGDYVSAITQAERIGEP-DYEVDE 1654 Query 182 EMLRKKQITVLDLHPGAGKTRRILPQIIKEAINRRLRTAVLAPTRVVAAEMAEALRGLPI 241 ++ RKK++T++DLHPGAGKT+RILP I++EA+ RRLRT +LAPTRVVAAEM EALRGLPI Sbjct 1655 DIFRKKRLTIMDLHPGAGKTKRILPSIVREALKRRLRTLILAPTRVVAAEMEEALRGLPI 1714 Query 242 RYQTSAVPREHNGNEIVDVMCHATLTHRLMSPHRVPNYNLFVMDEAHFTDPASIAARGYI 301 RYQT AV EH G EIVD+MCHAT T RL+S RVPNYNL VMDEAHFTDP+S+AARGYI Sbjct 1715 RYQTPAVKSEHTGREIVDLMCHATFTTRLLSSTRVPNYNLIVMDEAHFTDPSSVAARGYI 1774 Query 302 STKVELGEAAAIFMTATPPGTSDPFPESNSPISDLQTEIPDRAWNSGYEWITEYTGKTVW 361 ST+VE+GEAAAIFMTATPPG +DPFP+SNSPI D++ EIP+R+WN+G++WIT+Y GKTVW Sbjct 1775 STRVEMGEAAAIFMTATPPGATDPFPQSNSPIEDIEREIPERSWNTGFDWITDYQGKTVW 1834 Query 362 FVPSVKMGNEIALCLQRAGKKVVQLNRKSYETEYPKCKNDDWDFVITTDISEMGANFKAS 421 FVPS+K GN+IA CL+++GKKV+QL+RK+++TEYPK K DWDFV+TTDISEMGANF+A Sbjct 1835 FVPSIKAGNDIANCLRKSGKKVIQLSRKTFDTEYPKTKLTDWDFVVTTDISEMGANFRAG 1894 Query 422 RVIDSRKSVKPTIITEGEGRVILGEPSAVTAASAAQRRGRIGRNPSQVGDEYCYGGHTNE 481 RVID R+ +KP I+T+G RVIL P VT ASAAQRRGRIGRNP+Q D+Y + G + Sbjct 1895 RVIDPRRCLKPVILTDGPERVILAGPIPVTPASAAQRRGRIGRNPAQEDDQYVFSGDPLK 1954 Query 482 DDSNFAHWTEARIMLDNINMPNGLIAQFYQPEREKVYTMDGEYRLRGEERKNFLELLRTA 541 +D + AHWTEA+++LDNI P G+I + PEREK +DGE+RLRGE+RK F+EL++ Sbjct 1955 NDEDHAHWTEAKMLLDNIYTPEGIIPTLFGPEREKTQAIDGEFRLRGEQRKTFVELMKRG 2014 Query 542 DLPVWLAYKVAAAGVSYHDRRWCFDGPRTNTILEDNNEVEVITKLGERKILRPRWIDARV 601 DLPVWL+YKVA+AG+SY DR WCF G R N ILE+N EVE+ T+ GE+K LRP+W+DARV Sbjct 2015 DLPVWLSYKVASAGISYKDREWCFTGERNNQILEENMEVEIWTREGEKKKLRPKWLDARV 2074 Query 602 YSDHQALKAFKDFASGKR 619 Y+D ALK FK+FASG++ Sbjct 2075 YADPMALKDFKEFASGRK 2092 >RecName: Full=Genome polyprotein; Contains: RecName: Full=Capsid protein C; AltName: Full=Core protein; Contains: RecName: Full=Protein prM; Contains: RecName: Full=Peptide pr; Contains: RecName: Full=Small envelope protein M; AltName: Full=Matrix protein; Contains: RecName: Full=Envelope protein E; Contains: RecName: Full=Non-structural protein 1; Short=NS1; Contains: RecName: Full=Non-structural protein 2A; Short=NS2A; Contains: RecName: Full=Serine protease subunit NS2B; AltName: Full=Flavivirin protease NS2B regulatory subunit; AltName: Full=Non-structural protein 2B; Contains: RecName: Full=Serine protease NS3; AltName: Full=Flavivirin protease NS3 catalytic subunit; AltName: Full=Non-structural protein 3; Contains: RecName: Full=Non-structural protein 4A; Short=NS4A; Contains: RecName: Full=Peptide 2k; Contains: RecName: Full=Non-structural protein 4B; Short=NS4B; Contains: RecName: Full=RNA-directed RNA polymerase NS5; AltName: Full=Non-structural protein 5 [Dengue virus 4 Dominica/814669/1981] Sequence ID: P09866.2 Length: 3387 Range 1: 1476 to 2092 Score:863 bits(2229), Expect:0.0, Method:Compositional matrix adjust., Identities:396/618(64%), Positives:495/618(80%), Gaps:1/618(0%) Query 2 GVLWDTPSPKEYKKGDTTTGVYRIMTRGLLGSYQAGAGVMVEGVFHTLWHTTKGAALMSG 61 G LWD PSP KK + GVYRIM RGL G Q G G+ +EGVFHT+WH T+G+ + Sbjct 1476 GALWDVPSPAATKKAALSEGVYRIMQRGLFGKTQVGVGIHMEGVFHTMWHVTRGSVICHE 1535 Query 62 EGRLDPYWGSVKEDRLCYGGPWKLQHKWNGQDEVQMIVVEPGKNVKNVQTKPGVFKTPEG 121 GRL+P W V+ D + YGG W+L KW+ +++VQ++ +EPGKN K+VQTKPG+FKT G Sbjct 1536 TGRLEPSWADVRNDMISYGGGWRLGDKWDKEEDVQVLAIEPGKNPKHVQTKPGLFKTLTG 1595 Query 122 EIGAVTLDFPTGTSGSPIVDKNGDVIGLYGNGVIMPNGSYISAIVQGERMDEPIPAGFEP 181 EIGAVTLDF GTSGSPI+++ G VIGLYGNGV+ +G Y+SAI Q ER+ EP + Sbjct 1596 EIGAVTLDFKPGTSGSPIINRKGKVIGLYGNGVVTKSGDYVSAITQAERIGEP-DYEVDE 1654 Query 182 EMLRKKQITVLDLHPGAGKTRRILPQIIKEAINRRLRTAVLAPTRVVAAEMAEALRGLPI 241 ++ RKK++T++DLHPGAGKT+RILP I++EA+ RRLRT +LAPTRVVAAEM EALRGLPI Sbjct 1655 DIFRKKRLTIMDLHPGAGKTKRILPSIVREALKRRLRTLILAPTRVVAAEMEEALRGLPI 1714 Query 242 RYQTSAVPREHNGNEIVDVMCHATLTHRLMSPHRVPNYNLFVMDEAHFTDPASIAARGYI 301 RYQT AV EH G EIVD+MCHAT T RL+S RVPNYNL VMDEAHFTDP+S+AARGYI Sbjct 1715 RYQTPAVKSEHTGREIVDLMCHATFTTRLLSSTRVPNYNLIVMDEAHFTDPSSVAARGYI 1774 Query 302 STKVELGEAAAIFMTATPPGTSDPFPESNSPISDLQTEIPDRAWNSGYEWITEYTGKTVW 361 ST+VE+GEAAAIFMTATPPG +DPFP+SNSPI D++ EIP+R+WN+G++WIT+Y GKTVW Sbjct 1775 STRVEMGEAAAIFMTATPPGATDPFPQSNSPIEDIEREIPERSWNTGFDWITDYQGKTVW 1834 Query 362 FVPSVKMGNEIALCLQRAGKKVVQLNRKSYETEYPKCKNDDWDFVITTDISEMGANFKAS 421 FVPS+K GN+IA CL+++GKKV+QL+RK+++TEYPK K DWDFV+TTDISEMGANF+A Sbjct 1835 FVPSIKAGNDIANCLRKSGKKVIQLSRKTFDTEYPKTKLTDWDFVVTTDISEMGANFRAG 1894 Query 422 RVIDSRKSVKPTIITEGEGRVILGEPSAVTAASAAQRRGRIGRNPSQVGDEYCYGGHTNE 481 RVID R+ +KP I+ +G RVIL P VT ASAAQRRGRIGRNP+Q D+Y + G + Sbjct 1895 RVIDPRRCLKPVILPDGPERVILAGPIPVTPASAAQRRGRIGRNPAQEDDQYVFSGDPLK 1954 Query 482 DDSNFAHWTEARIMLDNINMPNGLIAQFYQPEREKVYTMDGEYRLRGEERKNFLELLRTA 541 +D + AHWTEA+++LDNI P G+I + PEREK +DGE+RLRGE+RK F+EL+R Sbjct 1955 NDEDHAHWTEAKMLLDNIYTPEGIIPTLFGPEREKTQAIDGEFRLRGEQRKTFVELMRRG 2014 Query 542 DLPVWLAYKVAAAGVSYHDRRWCFDGPRTNTILEDNNEVEVITKLGERKILRPRWIDARV 601 DLPVWL+YKVA+AG+SY DR WCF G R N ILE+N EVE+ T+ GE+K LRPRW+DARV Sbjct 2015 DLPVWLSYKVASAGISYKDREWCFTGERNNQILEENMEVEIWTREGEKKKLRPRWLDARV 2074 Query 602 YSDHQALKAFKDFASGKR 619 Y+D ALK FK+FASG++ Sbjct 2075 YADPMALKDFKEFASGRK 2092 >RecName: Full=Genome polyprotein; Contains: RecName: Full=Capsid protein C; AltName: Full=Core protein; Contains: RecName: Full=Protein prM; Contains: RecName: Full=Peptide pr; Contains: RecName: Full=Small envelope protein M; AltName: Full=Matrix protein; Contains: RecName: Full=Envelope protein E; Contains: RecName: Full=Non-structural protein 1; Short=NS1; Contains: RecName: Full=Non-structural protein 2A; Short=NS2A; Contains: RecName: Full=Serine protease subunit NS2B; AltName: Full=Flavivirin protease NS2B regulatory subunit; AltName: Full=Non-structural protein 2B; Contains: RecName: Full=Serine protease NS3; AltName: Full=Flavivirin protease NS3 catalytic subunit; AltName: Full=Non-structural protein 3; Contains: RecName: Full=Non-structural protein 4A; Short=NS4A; Contains: RecName: Full=Peptide 2k; Contains: RecName: Full=Non-structural protein 4B; Short=NS4B; Contains: RecName: Full=RNA-directed RNA polymerase NS5; AltName: Full=Non-structural protein 5 [Dengue virus 4 Singapore/8976/1995] Sequence ID: Q5UCB8.1 Length: 3387 Range 1: 1476 to 2092 Score:862 bits(2228), Expect:0.0, Method:Compositional matrix adjust., Identities:395/618(64%), Positives:496/618(80%), Gaps:1/618(0%) Query 2 GVLWDTPSPKEYKKGDTTTGVYRIMTRGLLGSYQAGAGVMVEGVFHTLWHTTKGAALMSG 61 G LWD PSP +K + GVYRIM RGL G Q G G+ +EGVFHT+WH T+G+ + Sbjct 1476 GALWDVPSPAATQKAALSEGVYRIMQRGLFGKTQVGVGIHIEGVFHTMWHVTRGSVICHE 1535 Query 62 EGRLDPYWGSVKEDRLCYGGPWKLQHKWNGQDEVQMIVVEPGKNVKNVQTKPGVFKTPEG 121 GRL+P W V+ D + YGG W+L KW+ +++VQ++ +EPGKN K+VQTKPG+FKT G Sbjct 1536 TGRLEPSWADVRNDMISYGGGWRLGDKWDKEEDVQVLAIEPGKNPKHVQTKPGLFKTLTG 1595 Query 122 EIGAVTLDFPTGTSGSPIVDKNGDVIGLYGNGVIMPNGSYISAIVQGERMDEPIPAGFEP 181 EIGAVTLDF GTSGSPI+++ G VIGLYGNGV+ +G Y+SAI Q ER+ EP + Sbjct 1596 EIGAVTLDFKPGTSGSPIINRKGKVIGLYGNGVVTKSGDYVSAITQAERIGEP-DYEVDE 1654 Query 182 EMLRKKQITVLDLHPGAGKTRRILPQIIKEAINRRLRTAVLAPTRVVAAEMAEALRGLPI 241 ++ RKK++T++DLHPGAGKT+RILP I++EA+ RRLRT +LAPTRVVAAEM EALRGLPI Sbjct 1655 DIFRKKRLTIMDLHPGAGKTKRILPSIVREALKRRLRTLILAPTRVVAAEMEEALRGLPI 1714 Query 242 RYQTSAVPREHNGNEIVDVMCHATLTHRLMSPHRVPNYNLFVMDEAHFTDPASIAARGYI 301 RYQT AV EH G EIVD+MCHAT T RL+S RVPNYNL VMDEAHFTDP+S+AARGYI Sbjct 1715 RYQTPAVKSEHTGREIVDLMCHATFTTRLLSSTRVPNYNLIVMDEAHFTDPSSVAARGYI 1774 Query 302 STKVELGEAAAIFMTATPPGTSDPFPESNSPISDLQTEIPDRAWNSGYEWITEYTGKTVW 361 ST+VE+GEAAAIFMTATPPGT+DPFP+SNSPI D++ EIP+R+WN+G++WIT+Y GKTVW Sbjct 1775 STRVEMGEAAAIFMTATPPGTTDPFPQSNSPIEDIEREIPERSWNTGFDWITDYQGKTVW 1834 Query 362 FVPSVKMGNEIALCLQRAGKKVVQLNRKSYETEYPKCKNDDWDFVITTDISEMGANFKAS 421 FVPS+K GN+IA CL+++GKKV+QL+RK+++TEYPK K DWDFV+TTDISEMGANF+A Sbjct 1835 FVPSIKAGNDIANCLRKSGKKVIQLSRKTFDTEYPKTKLTDWDFVVTTDISEMGANFRAG 1894 Query 422 RVIDSRKSVKPTIITEGEGRVILGEPSAVTAASAAQRRGRIGRNPSQVGDEYCYGGHTNE 481 RVID R+ +KP I+ +G RVIL P VT ASAAQRRGRIGRNP+Q D+Y + G + Sbjct 1895 RVIDPRRCLKPVILPDGPERVILAGPIPVTPASAAQRRGRIGRNPAQEDDQYVFSGDPLK 1954 Query 482 DDSNFAHWTEARIMLDNINMPNGLIAQFYQPEREKVYTMDGEYRLRGEERKNFLELLRTA 541 +D + AHWTEA+++LDNI P G+I + PEREK +DGE+RLRGE+RK F+EL+R Sbjct 1955 NDEDHAHWTEAKMLLDNIYTPEGIIPTLFGPEREKTQAIDGEFRLRGEQRKTFVELMRRG 2014 Query 542 DLPVWLAYKVAAAGVSYHDRRWCFDGPRTNTILEDNNEVEVITKLGERKILRPRWIDARV 601 DLPVWL+YKVA+AG+SY DR WCF G R N ILE+N EVE+ T+ GE+K LRP+W+DARV Sbjct 2015 DLPVWLSYKVASAGISYKDREWCFTGERNNQILEENMEVEIWTREGEKKKLRPKWLDARV 2074 Query 602 YSDHQALKAFKDFASGKR 619 Y+D ALK FK+FASG++ Sbjct 2075 YADPMALKDFKEFASGRK 2092 >RecName: Full=Genome polyprotein; Contains: RecName: Full=Capsid protein C; AltName: Full=Core protein; Contains: RecName: Full=Protein prM; Contains: RecName: Full=Peptide pr; Contains: RecName: Full=Small envelope protein M; AltName: Full=Matrix protein; Contains: RecName: Full=Envelope protein E; Contains: RecName: Full=Non-structural protein 1; Short=NS1; Contains: RecName: Full=Non-structural protein 2A; Short=NS2A; Contains: RecName: Full=Serine protease subunit NS2B; AltName: Full=Flavivirin protease NS2B regulatory subunit; AltName: Full=Non-structural protein 2B; Contains: RecName: Full=Serine protease NS3; AltName: Full=Flavivirin protease NS3 catalytic subunit; AltName: Full=Non-structural protein 3; Contains: RecName: Full=Non-structural protein 4A; Short=NS4A; Contains: RecName: Full=Peptide 2k; Contains: RecName: Full=Non-structural protein 4B; Short=NS4B; Contains: RecName: Full=RNA-directed RNA polymerase NS5; AltName: Full=Non-structural protein 5 [Dengue virus 4 Philippines/H241/1956] Sequence ID: Q58HT7.1 Length: 3387 Range 1: 1476 to 2092 Score:860 bits(2221), Expect:0.0, Method:Compositional matrix adjust., Identities:396/618(64%), Positives:494/618(79%), Gaps:1/618(0%) Query 2 GVLWDTPSPKEYKKGDTTTGVYRIMTRGLLGSYQAGAGVMVEGVFHTLWHTTKGAALMSG 61 G LWD PSP +K T GVYRIM RGL G Q G G+ +EGVFHT+WH T+G+ + Sbjct 1476 GALWDVPSPAAAQKATLTEGVYRIMQRGLFGKTQVGVGIHMEGVFHTMWHVTRGSVICHE 1535 Query 62 EGRLDPYWGSVKEDRLCYGGPWKLQHKWNGQDEVQMIVVEPGKNVKNVQTKPGVFKTPEG 121 GRL+P W V+ D + YGG W+L KW+ +++VQ++ +EPGKN K+VQTKPG+FKT G Sbjct 1536 TGRLEPSWADVRNDMISYGGGWRLGDKWDKEEDVQVLAIEPGKNPKHVQTKPGLFKTLTG 1595 Query 122 EIGAVTLDFPTGTSGSPIVDKNGDVIGLYGNGVIMPNGSYISAIVQGERMDEPIPAGFEP 181 EIGAVTLDF GTSGSPI+++ G VIGLYGNGV+ +G Y+SAI Q ER EP + Sbjct 1596 EIGAVTLDFKPGTSGSPIINRKGKVIGLYGNGVVTKSGDYVSAITQAERTGEP-DYEVDE 1654 Query 182 EMLRKKQITVLDLHPGAGKTRRILPQIIKEAINRRLRTAVLAPTRVVAAEMAEALRGLPI 241 ++ RKK++T++DLHPGAGKT+RILP I++EA+ RRLRT +LAPTRVVAAEM EALRGLPI Sbjct 1655 DIFRKKRLTIMDLHPGAGKTKRILPSIVREALKRRLRTLILAPTRVVAAEMEEALRGLPI 1714 Query 242 RYQTSAVPREHNGNEIVDVMCHATLTHRLMSPHRVPNYNLFVMDEAHFTDPASIAARGYI 301 RYQT AV EH G EIVD+MCHAT T RL+S RVPNYNL VMDEAHFTDP+S+AARGYI Sbjct 1715 RYQTPAVKSEHTGREIVDLMCHATFTTRLLSSTRVPNYNLIVMDEAHFTDPSSVAARGYI 1774 Query 302 STKVELGEAAAIFMTATPPGTSDPFPESNSPISDLQTEIPDRAWNSGYEWITEYTGKTVW 361 ST+VE+GEAAAIFMTATPPG +DPFP+SNSPI D++ EIP+R+WN+G++WIT+Y GKTVW Sbjct 1775 STRVEMGEAAAIFMTATPPGATDPFPQSNSPIEDIEREIPERSWNTGFDWITDYQGKTVW 1834 Query 362 FVPSVKMGNEIALCLQRAGKKVVQLNRKSYETEYPKCKNDDWDFVITTDISEMGANFKAS 421 FVPS+K GN+IA CL+++GKKV+QL+RK+++TEYPK K DWDFV+TTDISEMGANF+A Sbjct 1835 FVPSIKAGNDIANCLRKSGKKVIQLSRKTFDTEYPKTKLTDWDFVVTTDISEMGANFRAG 1894 Query 422 RVIDSRKSVKPTIITEGEGRVILGEPSAVTAASAAQRRGRIGRNPSQVGDEYCYGGHTNE 481 RVID R+ +KP I T+G RVIL P VT ASAAQRRGRIGRNP+Q D+Y + G + Sbjct 1895 RVIDPRRCLKPVISTDGPERVILAGPIPVTPASAAQRRGRIGRNPAQEDDQYVFSGDPLK 1954 Query 482 DDSNFAHWTEARIMLDNINMPNGLIAQFYQPEREKVYTMDGEYRLRGEERKNFLELLRTA 541 +D + AHWTEA+++LDNI P G+I + PEREK +DGE+RLRGE+RK F+EL+R Sbjct 1955 NDEDHAHWTEAKMLLDNIYTPEGIIPTLFGPEREKNQAIDGEFRLRGEQRKTFVELMRRG 2014 Query 542 DLPVWLAYKVAAAGVSYHDRRWCFDGPRTNTILEDNNEVEVITKLGERKILRPRWIDARV 601 DLPVWL+YKVA+AG+SY DR WCF G R N ILE+N EVE+ T+ GE+K LRP+W+DARV Sbjct 2015 DLPVWLSYKVASAGISYKDREWCFTGERNNQILEENMEVEIWTREGEKKKLRPKWLDARV 2074 Query 602 YSDHQALKAFKDFASGKR 619 Y+D ALK FK+FASG++ Sbjct 2075 YADPMALKDFKEFASGRK 2092 >RecName: Full=Genome polyprotein; Contains: RecName: Full=Capsid protein C; AltName: Full=Capsid protein; AltName: Full=Core protein; Contains: RecName: Full=Protein prM; AltName: Full=Precursor membrane protein; Contains: RecName: Full=Peptide pr; AltName: Full=Peptide precursor; Contains: RecName: Full=Small envelope protein M; AltName: Full=Matrix protein; Contains: RecName: Full=Envelope protein E; Contains: RecName: Full=Non-structural protein 1; Short=NS1; Contains: RecName: Full=Non-structural protein 2A; Short=NS2A; Contains: RecName: Full=Serine protease subunit NS2B; AltName: Full=Flavivirin protease NS2B regulatory subunit; AltName: Full=Non-structural protein 2B; Contains: RecName: Full=Serine protease NS3; AltName: Full=Flavivirin protease NS3 catalytic subunit; AltName: Full=Non-structural protein 3; Contains: RecName: Full=Non-structural protein 4A; Short=NS4A; Contains: RecName: Full=Peptide 2k; Contains: RecName: Full=Non-structural protein 4B; Short=NS4B; Contains: RecName: Full=RNA-directed RNA polymerase NS5; AltName: Full=Non-structural protein 5 [Dengue virus 1 Nauru/West Pac/1974] Sequence ID: P17763.2 Length: 3392 Range 1: 1477 to 2094 Score:854 bits(2206), Expect:0.0, Method:Compositional matrix adjust., Identities:395/619(64%), Positives:491/619(79%), Gaps:2/619(0%) Query 2 GVLWDTPSPKEYKKGDTTTGVYRIMTRGLLGSYQAGAGVMVEGVFHTLWHTTKGAALMSG 61 GVLWDTPSP E ++ G+YRI+ RGLLG Q G GV EGVFHT+WH T+GA LM Sbjct 1477 GVLWDTPSPPEVERAVLDDGIYRILQRGLLGRSQVGVGVFQEGVFHTMWHVTRGAVLMYQ 1536 Query 62 EGRLDPYWGSVKEDRLCYGGPWKLQHKWNGQDEVQMIVVEPGKNVKNVQTKPGVFKTPEG 121 RL+P W SVK+D + YGG W+ Q WN +EVQ+I VEPGKN KNVQT PG FKTPEG Sbjct 1537 GKRLEPSWASVKKDLISYGGGWRFQGSWNAGEEVQVIAVEPGKNPKNVQTAPGTFKTPEG 1596 Query 122 EIGAVTLDFPTGTSGSPIVDKNGDVIGLYGNGVIMPNGSYISAIVQGERMDE-PIPAGFE 180 E+GA+ LDF GTSGSPIV++ G ++GLYGNGV+ +G+Y+SAI Q + E P+P E Sbjct 1597 EVGAIALDFKPGTSGSPIVNREGKIVGLYGNGVVTTSGTYVSAIAQAKASQEGPLPE-IE 1655 Query 181 PEMLRKKQITVLDLHPGAGKTRRILPQIIKEAINRRLRTAVLAPTRVVAAEMAEALRGLP 240 E+ RK+ +T++DLHPG+GKTRR LP I++EAI R +RT VLAPTRVVA+EMAEAL+G+P Sbjct 1656 DEVFRKRNLTIMDLHPGSGKTRRYLPAIVREAIRRNVRTLVLAPTRVVASEMAEALKGMP 1715 Query 241 IRYQTSAVPREHNGNEIVDVMCHATLTHRLMSPHRVPNYNLFVMDEAHFTDPASIAARGY 300 IRYQT+AV EH G EIVD+MCHAT T RL+SP RVPNYN+ +MDEAHFTDPASIAARGY Sbjct 1716 IRYQTTAVKSEHTGKEIVDLMCHATFTMRLLSPVRVPNYNMIIMDEAHFTDPASIAARGY 1775 Query 301 ISTKVELGEAAAIFMTATPPGTSDPFPESNSPISDLQTEIPDRAWNSGYEWITEYTGKTV 360 IST+V +GEAAAIFMTATPPG+ + FP+SN+ I D + +IP+R+WNSGY+WIT++ GKTV Sbjct 1776 ISTRVGMGEAAAIFMTATPPGSVEAFPQSNAVIQDEERDIPERSWNSGYDWITDFPGKTV 1835 Query 361 WFVPSVKMGNEIALCLQRAGKKVVQLNRKSYETEYPKCKNDDWDFVITTDISEMGANFKA 420 WFVPS+K GN+IA CL++ GK+VVQL+RK+++TEY K KN+DWD+V+TTDISEMGANF+A Sbjct 1836 WFVPSIKSGNDIANCLRKNGKRVVQLSRKTFDTEYQKTKNNDWDYVVTTDISEMGANFRA 1895 Query 421 SRVIDSRKSVKPTIITEGEGRVILGEPSAVTAASAAQRRGRIGRNPSQVGDEYCYGGHTN 480 RVID R+ +KP I+ +G RVIL P VT ASAAQRRGRIGRN ++ GD+Y Y G Sbjct 1896 DRVIDPRRCLKPVILKDGPERVILAGPMPVTVASAAQRRGRIGRNQNKEGDQYIYMGQPL 1955 Query 481 EDDSNFAHWTEARIMLDNINMPNGLIAQFYQPEREKVYTMDGEYRLRGEERKNFLELLRT 540 +D + AHWTEA+++LDNIN P G+I ++PEREK +DGEYRLRGE RK F+EL+R Sbjct 1956 NNDEDHAHWTEAKMLLDNINTPEGIIPALFEPEREKSAAIDGEYRLRGEARKTFVELMRR 2015 Query 541 ADLPVWLAYKVAAAGVSYHDRRWCFDGPRTNTILEDNNEVEVITKLGERKILRPRWIDAR 600 DLPVWL+YKVA+ G Y DRRWCFDG R N +LE+N +VE+ TK GERK LRPRW+DAR Sbjct 2016 GDLPVWLSYKVASEGFQYSDRRWCFDGERNNQVLEENMDVEIWTKEGERKKLRPRWLDAR 2075 Query 601 VYSDHQALKAFKDFASGKR 619 YSD AL+ FK+FA+G+R Sbjct 2076 TYSDPLALREFKEFAAGRR 2094 >RecName: Full=Genome polyprotein; Contains: RecName: Full=Protein C; AltName: Full=Core protein; Contains: RecName: Full=Protein prM; Contains: RecName: Full=Peptide pr; Contains: RecName: Full=Small envelope protein M; AltName: Full=Matrix protein; Contains: RecName: Full=Envelope protein E; Contains: RecName: Full=Non-structural protein 1; Short=NS1; Contains: RecName: Full=Non-structural protein 2A; Short=NS2A; Contains: RecName: Full=Non-structural protein 2A-alpha; Short=NS2A-alpha; Contains: RecName: Full=Serine protease subunit NS2B; AltName: Full=Flavivirin protease NS2B regulatory subunit; AltName: Full=Non-structural protein 2B; Contains: RecName: Full=Serine protease NS3; AltName: Full=Flavivirin protease NS3 catalytic subunit; AltName: Full=Non-structural protein 3; Contains: RecName: Full=Non-structural protein 4A; Short=NS4A; Contains: RecName: Full=Peptide 2k; Contains: RecName: Full=Non-structural protein 4B; Short=NS4B; Contains: RecName: Full=RNA-directed RNA polymerase NS5; AltName: Full=Non-structural protein 5 [Dengue virus 1 Brazil/97-11/1997] Sequence ID: P27909.2 Length: 3392 Range 1: 1477 to 2094 Score:852 bits(2201), Expect:0.0, Method:Compositional matrix adjust., Identities:392/619(63%), Positives:492/619(79%), Gaps:2/619(0%) Query 2 GVLWDTPSPKEYKKGDTTTGVYRIMTRGLLGSYQAGAGVMVEGVFHTLWHTTKGAALMSG 61 GVLWDTPSP E ++ G+YRI+ RGLLG Q G GV +GVFHT+WH T+GA LM Sbjct 1477 GVLWDTPSPPEVERAVLDDGIYRILQRGLLGRSQVGVGVFQDGVFHTMWHVTRGAVLMYQ 1536 Query 62 EGRLDPYWGSVKEDRLCYGGPWKLQHKWNGQDEVQMIVVEPGKNVKNVQTKPGVFKTPEG 121 RL+P W SVK+D + YGG W+ Q WN +EVQ+I VEPGKN KNVQT PG FKTPEG Sbjct 1537 GKRLEPSWASVKKDLISYGGGWRFQGSWNTGEEVQVIAVEPGKNPKNVQTTPGTFKTPEG 1596 Query 122 EIGAVTLDFPTGTSGSPIVDKNGDVIGLYGNGVIMPNGSYISAIVQGERMDE-PIPAGFE 180 E+GA+ LDF GTSGSPIV++ G ++GLYGNGV+ +G+Y+SAI Q + E P+P E Sbjct 1597 EVGAIALDFKPGTSGSPIVNREGKIVGLYGNGVVTTSGTYVSAIAQAKASQEGPLPE-IE 1655 Query 181 PEMLRKKQITVLDLHPGAGKTRRILPQIIKEAINRRLRTAVLAPTRVVAAEMAEALRGLP 240 E+ +K+ +T++DLHPG+GKTRR LP I++EAI R+LRT +LAPTRVVA+EMAEAL+G+P Sbjct 1656 DEVFKKRNLTIMDLHPGSGKTRRYLPAIVREAIKRKLRTLILAPTRVVASEMAEALKGMP 1715 Query 241 IRYQTSAVPREHNGNEIVDVMCHATLTHRLMSPHRVPNYNLFVMDEAHFTDPASIAARGY 300 IRYQT+AV EH G EIVD+MCHAT T RL+SP RVPNYN+ +MDEAHFTDPASIAARGY Sbjct 1716 IRYQTTAVKSEHTGREIVDLMCHATFTMRLLSPVRVPNYNMIIMDEAHFTDPASIAARGY 1775 Query 301 ISTKVELGEAAAIFMTATPPGTSDPFPESNSPISDLQTEIPDRAWNSGYEWITEYTGKTV 360 IST+V +GEAAAIFMTATPPG+ + FP+SN+ I D + +IP+R+WNSGY+WIT++ GKTV Sbjct 1776 ISTRVGMGEAAAIFMTATPPGSVEAFPQSNAVIQDEERDIPERSWNSGYDWITDFPGKTV 1835 Query 361 WFVPSVKMGNEIALCLQRAGKKVVQLNRKSYETEYPKCKNDDWDFVITTDISEMGANFKA 420 WFVPS+K GN+IA CL++ GK+V+QL+RK+++TEY K KN+DWD+V+TTDISEMGANF+A Sbjct 1836 WFVPSIKSGNDIANCLRKNGKRVIQLSRKTFDTEYQKTKNNDWDYVVTTDISEMGANFRA 1895 Query 421 SRVIDSRKSVKPTIITEGEGRVILGEPSAVTAASAAQRRGRIGRNPSQVGDEYCYGGHTN 480 RVID R+ +KP I+ +G RVIL P VT ASAAQRRGRIGRN ++ GD+Y Y G Sbjct 1896 DRVIDPRRCLKPVILKDGPERVILAGPMPVTVASAAQRRGRIGRNQNKEGDQYVYMGQPL 1955 Query 481 EDDSNFAHWTEARIMLDNINMPNGLIAQFYQPEREKVYTMDGEYRLRGEERKNFLELLRT 540 +D + AHWTEA+++LDNIN P G+I ++PEREK +DGEYRLRGE RK F+EL+R Sbjct 1956 NNDEDHAHWTEAKMLLDNINTPEGIIPALFEPEREKSAAIDGEYRLRGEARKTFVELMRR 2015 Query 541 ADLPVWLAYKVAAAGVSYHDRRWCFDGPRTNTILEDNNEVEVITKLGERKILRPRWIDAR 600 DLPVWL+YKVA+ G Y DRRWCFDG R N +LE+N +VE+ TK GERK LRPRW+DAR Sbjct 2016 GDLPVWLSYKVASEGFQYSDRRWCFDGERNNQVLEENMDVEIWTKEGERKKLRPRWLDAR 2075 Query 601 VYSDHQALKAFKDFASGKR 619 YSD AL+ FK+FA+G+R Sbjct 2076 TYSDPLALREFKEFAAGRR 2094 >RecName: Full=Genome polyprotein; Contains: RecName: Full=Capsid protein C; AltName: Full=Core protein; Contains: RecName: Full=Protein prM; Contains: RecName: Full=Peptide pr; Contains: RecName: Full=Small envelope protein M; AltName: Full=Matrix protein; Contains: RecName: Full=Envelope protein E; Contains: RecName: Full=Non-structural protein 1; Short=NS1; Contains: RecName: Full=Non-structural protein 2A; Short=NS2A; Contains: RecName: Full=Serine protease subunit NS2B; AltName: Full=Flavivirin protease NS2B regulatory subunit; AltName: Full=Non-structural protein 2B; Contains: RecName: Full=Serine protease NS3; AltName: Full=Flavivirin protease NS3 catalytic subunit; AltName: Full=Non-structural protein 3; Contains: RecName: Full=Non-structural protein 4A; Short=NS4A; Contains: RecName: Full=Peptide 2k; Contains: RecName: Full=Non-structural protein 4B; Short=NS4B; Contains: RecName: Full=RNA-directed RNA polymerase NS5; AltName: Full=Non-structural protein 5 [Dengue virus 1 Singapore/S275/1990] Sequence ID: P33478.2 Length: 3391 Range 1: 1476 to 2093 Score:850 bits(2195), Expect:0.0, Method:Compositional matrix adjust., Identities:393/619(63%), Positives:490/619(79%), Gaps:2/619(0%) Query 2 GVLWDTPSPKEYKKGDTTTGVYRIMTRGLLGSYQAGAGVMVEGVFHTLWHTTKGAALMSG 61 GVLWDTPSP E ++ G+YRIM RGLLG Q G GV +GVFHT+WH T+GA LM Sbjct 1476 GVLWDTPSPPEVERAVLDDGIYRIMQRGLLGRSQVGVGVFQDGVFHTMWHVTRGAVLMYQ 1535 Query 62 EGRLDPYWGSVKEDRLCYGGPWKLQHKWNGQDEVQMIVVEPGKNVKNVQTKPGVFKTPEG 121 RL+P W SVK+D + YGG W+ Q WN +EVQ+I VEPGKN KNVQT PG FKTPEG Sbjct 1536 GKRLEPSWASVKKDLISYGGGWRFQGSWNTGEEVQVIAVEPGKNPKNVQTAPGTFKTPEG 1595 Query 122 EIGAVTLDFPTGTSGSPIVDKNGDVIGLYGNGVIMPNGSYISAIVQGERMDE-PIPAGFE 180 E+GA+ LDF GTSGSPIV++ G ++GLYGNGV+ +G+Y+SAI Q + E P+P E Sbjct 1596 EVGAIALDFKPGTSGSPIVNREGKIVGLYGNGVVTTSGTYVSAIAQAKASQEGPLPE-IE 1654 Query 181 PEMLRKKQITVLDLHPGAGKTRRILPQIIKEAINRRLRTAVLAPTRVVAAEMAEALRGLP 240 E+ RK+ +T++DLHPG+GKTRR LP I++EAI R +RT +LAPTRVVA+EMAEAL+G+P Sbjct 1655 DEVFRKRNLTIMDLHPGSGKTRRYLPAIVREAIRRNVRTLILAPTRVVASEMAEALKGMP 1714 Query 241 IRYQTSAVPREHNGNEIVDVMCHATLTHRLMSPHRVPNYNLFVMDEAHFTDPASIAARGY 300 IRYQT+AV EH G EIVD+MCHAT T RL+SP RVPNYN+ +MDEAHFTDPASIA RGY Sbjct 1715 IRYQTTAVKSEHTGKEIVDLMCHATFTMRLLSPVRVPNYNMIIMDEAHFTDPASIARRGY 1774 Query 301 ISTKVELGEAAAIFMTATPPGTSDPFPESNSPISDLQTEIPDRAWNSGYEWITEYTGKTV 360 IST+V +GEAAAIFMTATPPG+ + FP+SN+ I D + +IP+R+WNSGYEWIT++ GKTV Sbjct 1775 ISTRVGMGEAAAIFMTATPPGSVEAFPQSNAVIQDEERDIPERSWNSGYEWITDFPGKTV 1834 Query 361 WFVPSVKMGNEIALCLQRAGKKVVQLNRKSYETEYPKCKNDDWDFVITTDISEMGANFKA 420 WFVPS+K GN+IA CL++ GK+V+QL+RK+++TEY K KN+DWD+V+TTDISEMGANF+A Sbjct 1835 WFVPSIKSGNDIANCLRKNGKRVIQLSRKTFDTEYQKTKNNDWDYVVTTDISEMGANFRA 1894 Query 421 SRVIDSRKSVKPTIITEGEGRVILGEPSAVTAASAAQRRGRIGRNPSQVGDEYCYGGHTN 480 RVID R+ +KP I+ +G RVIL P VT ASAAQRRGRIGRN ++ GD+Y Y G Sbjct 1895 DRVIDPRRCLKPVILKDGPERVILAGPMPVTVASAAQRRGRIGRNQNKEGDQYVYMGQPL 1954 Query 481 EDDSNFAHWTEARIMLDNINMPNGLIAQFYQPEREKVYTMDGEYRLRGEERKNFLELLRT 540 +D + AHWTEA+++LDNIN P G+I ++PEREK +DGEYRLRGE RK F+EL+R Sbjct 1955 NNDEDHAHWTEAKMLLDNINTPEGIIPALFEPEREKSAAIDGEYRLRGEARKTFVELMRR 2014 Query 541 ADLPVWLAYKVAAAGVSYHDRRWCFDGPRTNTILEDNNEVEVITKLGERKILRPRWIDAR 600 DLPVWL+YKVA+ G Y DRRWCFDG R N +LE+N +VE+ TK GERK LRPRW+DAR Sbjct 2015 GDLPVWLSYKVASEGFQYSDRRWCFDGERNNQVLEENMDVEMWTKEGERKKLRPRWLDAR 2074 Query 601 VYSDHQALKAFKDFASGKR 619 YSD AL+ FK+FA+G+R Sbjct 2075 TYSDPLALREFKEFAAGRR 2093 >RecName: Full=Genome polyprotein; Contains: RecName: Full=Capsid protein C; AltName: Full=Core protein; Contains: RecName: Full=Protein prM; Contains: RecName: Full=Peptide pr; Contains: RecName: Full=Small envelope protein M; AltName: Full=Matrix protein; Contains: RecName: Full=Envelope protein E; Contains: RecName: Full=Non-structural protein 1; Short=NS1; Contains: RecName: Full=Non-structural protein 2A; Short=NS2A; Contains: RecName: Full=Serine protease subunit NS2B; AltName: Full=Flavivirin protease NS2B regulatory subunit; AltName: Full=Non-structural protein 2B; Contains: RecName: Full=Serine protease NS3; AltName: Full=Flavivirin protease NS3 catalytic subunit; AltName: Full=Non-structural protein 3; Contains: RecName: Full=Non-structural protein 4A; Short=NS4A; Contains: RecName: Full=Peptide 2k; Contains: RecName: Full=Non-structural protein 4B; Short=NS4B; Contains: RecName: Full=RNA-directed RNA polymerase NS5; AltName: Full=Non-structural protein 5 [Dengue virus 2 Thailand/0168/1979] Sequence ID: P14337.2 Length: 3391 Range 1: 1476 to 2093 Score:847 bits(2188), Expect:0.0, Method:Compositional matrix adjust., Identities:394/619(64%), Positives:489/619(78%), Gaps:1/619(0%) Query 1 GGVLWDTPSPKEYKKGDTTTGVYRIMTRGLLGSYQAGAGVMVEGVFHTLWHTTKGAALMS 60 GVLWD PSP K + G YRI +G+LG Q GAGV EG FHT+WH T+GA LM Sbjct 1476 AGVLWDVPSPPPMGKAELEDGAYRIKQKGILGYSQIGAGVYKEGTFHTMWHVTRGAVLMH 1535 Query 61 GEGRLDPYWGSVKEDRLCYGGPWKLQHKWNGQDEVQMIVVEPGKNVKNVQTKPGVFKTPE 120 R++P W VK+D + YGG WKL+ +W +EVQ++ +EPGKN + VQTKPG+FKT Sbjct 1536 KGKRIEPSWADVKKDLISYGGGWKLEGEWKEGEEVQVLALEPGKNPRAVQTKPGLFKTNA 1595 Query 121 GEIGAVTLDFPTGTSGSPIVDKNGDVIGLYGNGVIMPNGSYISAIVQGERMDEPIPAGFE 180 G IGAV+LDF GTSGSPI+DK G V+GLYGNGV+ +G+Y+SAI Q E+ E P E Sbjct 1596 GTIGAVSLDFSPGTSGSPIIDKKGKVVGLYGNGVVTRSGAYVSAIAQTEKSIEDNPE-IE 1654 Query 181 PEMLRKKQITVLDLHPGAGKTRRILPQIIKEAINRRLRTAVLAPTRVVAAEMAEALRGLP 240 ++ RK+++T++DLHPGAGKT+R LP I++EAI R LRT +LAPTRVVAAEM EALRGLP Sbjct 1655 DDIFRKRRLTIMDLHPGAGKTKRYLPAIVREAIKRGLRTLILAPTRVVAAEMEEALRGLP 1714 Query 241 IRYQTSAVPREHNGNEIVDVMCHATLTHRLMSPHRVPNYNLFVMDEAHFTDPASIAARGY 300 IRYQT A+ EH G EIVD+MCHAT T RL+SP RVPNYNL +MDEAHFTDPASIAARGY Sbjct 1715 IRYQTPAIRAEHTGREIVDLMCHATFTMRLLSPVRVPNYNLIIMDEAHFTDPASIAARGY 1774 Query 301 ISTKVELGEAAAIFMTATPPGTSDPFPESNSPISDLQTEIPDRAWNSGYEWITEYTGKTV 360 IST+VE+GEAA IFMTATPPG+ DPFP+SN+PI D + EIP+R+WNSG+EW+T++ GKTV Sbjct 1775 ISTRVEMGEAAGIFMTATPPGSRDPFPQSNAPIIDEEREIPERSWNSGHEWVTDFKGKTV 1834 Query 361 WFVPSVKMGNEIALCLQRAGKKVVQLNRKSYETEYPKCKNDDWDFVITTDISEMGANFKA 420 WFVPS+K GN+IA CL++ GKKV+QL+RK++++EY K + +DWDFV+TTDISEMGANFKA Sbjct 1835 WFVPSIKAGNDIAACLRKNGKKVIQLSRKTFDSEYVKTRTNDWDFVVTTDISEMGANFKA 1894 Query 421 SRVIDSRKSVKPTIITEGEGRVILGEPSAVTAASAAQRRGRIGRNPSQVGDEYCYGGHTN 480 RVID R+ +KP I+T+GE RVIL P VT +SAAQRRGRIGRNP D+Y Y G Sbjct 1895 ERVIDPRRCMKPVILTDGEERVILAGPMPVTHSSAAQRRGRIGRNPKNENDQYIYMGEPL 1954 Query 481 EDDSNFAHWTEARIMLDNINMPNGLIAQFYQPEREKVYTMDGEYRLRGEERKNFLELLRT 540 E+D + AHW EA+++LDNIN P G+I ++PEREKV +DGEYRLRGE RK F++L+R Sbjct 1955 ENDEDCAHWKEAKMLLDNINTPEGIIPSMFEPEREKVDAIDGEYRLRGEARKTFVDLMRR 2014 Query 541 ADLPVWLAYKVAAAGVSYHDRRWCFDGPRTNTILEDNNEVEVITKLGERKILRPRWIDAR 600 DLPVWLAYKVAA G++Y DRRWCFDG + N ILE+N EVE+ TK GERK L+PRW+DAR Sbjct 2015 GDLPVWLAYKVAAEGINYADRRWCFDGIKNNQILEENVEVEIWTKEGERKKLKPRWLDAR 2074 Query 601 VYSDHQALKAFKDFASGKR 619 +YSD ALK FK+FA+G++ Sbjct 2075 IYSDPLALKEFKEFAAGRK 2093 >RecName: Full=Genome polyprotein; Contains: RecName: Full=Capsid protein C; AltName: Full=Core protein; Contains: RecName: Full=Protein prM; Contains: RecName: Full=Peptide pr; Contains: RecName: Full=Small envelope protein M; AltName: Full=Matrix protein; Contains: RecName: Full=Envelope protein E; Contains: RecName: Full=Non-structural protein 1; Short=NS1; Contains: RecName: Full=Non-structural protein 2A; Short=NS2A; Contains: RecName: Full=Serine protease subunit NS2B; AltName: Full=Flavivirin protease NS2B regulatory subunit; AltName: Full=Non-structural protein 2B; Contains: RecName: Full=Serine protease NS3; AltName: Full=Flavivirin protease NS3 catalytic subunit; AltName: Full=Non-structural protein 3; Contains: RecName: Full=Non-structural protein 4A; Short=NS4A; Contains: RecName: Full=Peptide 2k; Contains: RecName: Full=Non-structural protein 4B; Short=NS4B; Contains: RecName: Full=RNA-directed RNA polymerase NS5; AltName: Full=Non-structural protein 5 [Dengue virus 2 Jamaica/1409/1983] Sequence ID: P07564.2 Length: 3391 Range 1: 1476 to 2093 Score:847 bits(2188), Expect:0.0, Method:Compositional matrix adjust., Identities:395/619(64%), Positives:489/619(78%), Gaps:1/619(0%) Query 1 GGVLWDTPSPKEYKKGDTTTGVYRIMTRGLLGSYQAGAGVMVEGVFHTLWHTTKGAALMS 60 GVLWD PSP K + G YRI RG+LG Q GAGV EG FHT+WH T+GA LM Sbjct 1476 AGVLWDVPSPPPVGKAELEDGAYRIKQRGILGYSQIGAGVYKEGTFHTMWHVTRGAVLMH 1535 Query 61 GEGRLDPYWGSVKEDRLCYGGPWKLQHKWNGQDEVQMIVVEPGKNVKNVQTKPGVFKTPE 120 R++P W VK+D + YGG WKL+ +W +EVQ++ +EPGKN + VQTKPG+FKT Sbjct 1536 KGKRIEPSWADVKKDLISYGGGWKLEGEWKEGEEVQVLALEPGKNPRAVQTKPGLFKTNT 1595 Query 121 GEIGAVTLDFPTGTSGSPIVDKNGDVIGLYGNGVIMPNGSYISAIVQGERMDEPIPAGFE 180 G IGAV+LDF GTSGSPIVD+ G V+GLYGNGV+ +G+Y+SAI Q E+ E P E Sbjct 1596 GTIGAVSLDFSPGTSGSPIVDRKGKVVGLYGNGVVTRSGAYVSAIAQTEKSIEDNPE-IE 1654 Query 181 PEMLRKKQITVLDLHPGAGKTRRILPQIIKEAINRRLRTAVLAPTRVVAAEMAEALRGLP 240 ++ RKK++T++DLHPGAGKT+R LP I++EAI R LRT +LAPTRVVAAEM EALRGLP Sbjct 1655 DDIFRKKRLTIMDLHPGAGKTKRYLPAIVREAIKRGLRTLILAPTRVVAAEMEEALRGLP 1714 Query 241 IRYQTSAVPREHNGNEIVDVMCHATLTHRLMSPHRVPNYNLFVMDEAHFTDPASIAARGY 300 IRYQT A+ EH G EIVD+MCHAT T RL+SP RVPNYNL +MDEAHFTDPASIAARGY Sbjct 1715 IRYQTPAIRAEHTGREIVDLMCHATFTMRLLSPVRVPNYNLIIMDEAHFTDPASIAARGY 1774 Query 301 ISTKVELGEAAAIFMTATPPGTSDPFPESNSPISDLQTEIPDRAWNSGYEWITEYTGKTV 360 IST+VE+GEAA IFMTATPPG+ DPFP+SN+PI D + EIP+R+WNSG+EW+T++ GKTV Sbjct 1775 ISTRVEMGEAAGIFMTATPPGSRDPFPQSNAPIMDEEREIPERSWNSGHEWVTDFKGKTV 1834 Query 361 WFVPSVKMGNEIALCLQRAGKKVVQLNRKSYETEYPKCKNDDWDFVITTDISEMGANFKA 420 WFVPS+K GN+IA CL++ GKKV+QL+RK++++EY K + +DWDFV+TTDISEMGANFKA Sbjct 1835 WFVPSIKAGNDIAACLRKNGKKVIQLSRKTFDSEYVKTRANDWDFVVTTDISEMGANFKA 1894 Query 421 SRVIDSRKSVKPTIITEGEGRVILGEPSAVTAASAAQRRGRIGRNPSQVGDEYCYGGHTN 480 RVID R+ +KP I+T+GE RVIL P VT +SAAQRRGRIGRNP D+Y Y G Sbjct 1895 ERVIDPRRCMKPVILTDGEERVILAGPMPVTHSSAAQRRGRIGRNPKNENDQYIYMGEPL 1954 Query 481 EDDSNFAHWTEARIMLDNINMPNGLIAQFYQPEREKVYTMDGEYRLRGEERKNFLELLRT 540 E+D + AHW EA+++LDNIN P G+I ++PEREKV +DGEYRLRGE RK F++L+R Sbjct 1955 ENDEDCAHWKEAKMLLDNINTPEGIIPSMFEPEREKVDAIDGEYRLRGEARKTFVDLMRR 2014 Query 541 ADLPVWLAYKVAAAGVSYHDRRWCFDGPRTNTILEDNNEVEVITKLGERKILRPRWIDAR 600 DLPVWLAY+VAA G++Y DRRWCFDG + N ILE+N EVE+ TK GERK L+PRW+DAR Sbjct 2015 GDLPVWLAYRVAAEGINYADRRWCFDGIKNNQILEENVEVEIWTKEGERKKLKPRWLDAR 2074 Query 601 VYSDHQALKAFKDFASGKR 619 +YSD ALK FK+FA+G++ Sbjct 2075 IYSDPLALKEFKEFAAGRK 2093 >RecName: Full=Genome polyprotein; Contains: RecName: Full=Envelope protein E; Contains: RecName: Full=Non-structural protein 1; Short=NS1; Contains: RecName: Full=Non-structural protein 2A; Short=NS2A; Contains: RecName: Full=Serine protease NS3; AltName: Full=Non-structural protein 3 [Dengue virus 2 Tonga/EKB194/1974] Sequence ID: P27914.1 Length: 1683 Range 1: 1066 to 1683 Score:847 bits(2187), Expect:0.0, Method:Compositional matrix adjust., Identities:394/619(64%), Positives:489/619(78%), Gaps:1/619(0%) Query 1 GGVLWDTPSPKEYKKGDTTTGVYRIMTRGLLGSYQAGAGVMVEGVFHTLWHTTKGAALMS 60 GVLWD PSP K + G YRI +G+LG Q GAGV EG FHT+WH T+GA LM Sbjct 1066 AGVLWDVPSPPPVGKAELEDGAYRIKQKGILGYSQIGAGVYKEGTFHTMWHVTRGAVLMH 1125 Query 61 GEGRLDPYWGSVKEDRLCYGGPWKLQHKWNGQDEVQMIVVEPGKNVKNVQTKPGVFKTPE 120 R++P W VK+D + YGG WKL+ +W +EVQ++ +EPGKN + VQTKPG+F+T Sbjct 1126 KGKRIEPSWADVKKDLISYGGGWKLEGEWKEGEEVQVLALEPGKNPRAVQTKPGLFRTNT 1185 Query 121 GEIGAVTLDFPTGTSGSPIVDKNGDVIGLYGNGVIMPNGSYISAIVQGERMDEPIPAGFE 180 G IGAV+LDF GTSGSPIVDK G V+GLYGNGV+ +G+Y+SAI Q E+ E P E Sbjct 1186 GTIGAVSLDFSPGTSGSPIVDKKGKVVGLYGNGVVTRSGAYVSAIAQTEKSIEDNPE-IE 1244 Query 181 PEMLRKKQITVLDLHPGAGKTRRILPQIIKEAINRRLRTAVLAPTRVVAAEMAEALRGLP 240 ++ RK+++T++DLHPGAGKT+R LP I++EAI R LRT +LAPTRVVAAEM EALRGLP Sbjct 1245 DDIFRKRRLTIMDLHPGAGKTKRYLPAIVREAIKRGLRTLILAPTRVVAAEMEEALRGLP 1304 Query 241 IRYQTSAVPREHNGNEIVDVMCHATLTHRLMSPHRVPNYNLFVMDEAHFTDPASIAARGY 300 IRYQT A+ EH G EIVD+MCHAT T RL+SP RVPNYNL +MDEAHFTDPASIAARGY Sbjct 1305 IRYQTPAIRAEHTGREIVDLMCHATFTMRLLSPIRVPNYNLIIMDEAHFTDPASIAARGY 1364 Query 301 ISTKVELGEAAAIFMTATPPGTSDPFPESNSPISDLQTEIPDRAWNSGYEWITEYTGKTV 360 IST+VE+GEAA IFMTATPPG+ DPFP+SN+PI D + EIP+R+WNSG+EW+T++ GKTV Sbjct 1365 ISTRVEMGEAAGIFMTATPPGSRDPFPQSNAPIMDEEREIPERSWNSGHEWVTDFKGKTV 1424 Query 361 WFVPSVKMGNEIALCLQRAGKKVVQLNRKSYETEYPKCKNDDWDFVITTDISEMGANFKA 420 WFVPS+K GN+IA CL++ GK+V+QL+RK++++EY K + +DWDFV+TTDISEMGANFKA Sbjct 1425 WFVPSIKTGNDIAACLRKNGKRVIQLSRKTFDSEYVKTRTNDWDFVVTTDISEMGANFKA 1484 Query 421 SRVIDSRKSVKPTIITEGEGRVILGEPSAVTAASAAQRRGRIGRNPSQVGDEYCYGGHTN 480 RVID R+ +KP I+T+GE RVIL P VT +SAAQRRGRIGRNP D+Y Y G Sbjct 1485 ERVIDPRRCMKPVILTDGEERVILAGPMPVTHSSAAQRRGRIGRNPRNENDQYIYMGEPL 1544 Query 481 EDDSNFAHWTEARIMLDNINMPNGLIAQFYQPEREKVYTMDGEYRLRGEERKNFLELLRT 540 E+D + AHW EA+++LDNIN P G+I ++PEREKV +DGEYRLRGE RK F++L+R Sbjct 1545 ENDEDCAHWKEAKMLLDNINTPEGIIPSIFEPEREKVDAIDGEYRLRGEARKTFVDLMRR 1604 Query 541 ADLPVWLAYKVAAAGVSYHDRRWCFDGPRTNTILEDNNEVEVITKLGERKILRPRWIDAR 600 DLPVWLAYKVAA G++Y DRRWCFDG R N ILE+N EVE+ TK GERK L+PRW+DAR Sbjct 1605 GDLPVWLAYKVAAEGINYADRRWCFDGTRNNQILEENVEVEIWTKEGERKKLKPRWLDAR 1664 Query 601 VYSDHQALKAFKDFASGKR 619 +YSD ALK FK+FA+G++ Sbjct 1665 IYSDPLALKEFKEFAAGRK 1683 >RecName: Full=Genome polyprotein; Contains: RecName: Full=Capsid protein C; AltName: Full=Core protein; Contains: RecName: Full=Protein prM; Contains: RecName: Full=Peptide pr; Contains: RecName: Full=Small envelope protein M; AltName: Full=Matrix protein; Contains: RecName: Full=Envelope protein E; Contains: RecName: Full=Non-structural protein 1; Short=NS1; Contains: RecName: Full=Non-structural protein 2A; Short=NS2A; Contains: RecName: Full=Serine protease subunit NS2B; AltName: Full=Flavivirin protease NS2B regulatory subunit; AltName: Full=Non-structural protein 2B; Contains: RecName: Full=Serine protease NS3; AltName: Full=Flavivirin protease NS3 catalytic subunit; AltName: Full=Non-structural protein 3; Contains: RecName: Full=Non-structural protein 4A; Short=NS4A; Contains: RecName: Full=Peptide 2k; Contains: RecName: Full=Non-structural protein 4B; Short=NS4B; Contains: RecName: Full=RNA-directed RNA polymerase NS5; AltName: Full=Non-structural protein 5 [Dengue virus 2 Peru/IQT2913/1996] Sequence ID: Q9WDA6.1 Length: 3391 Range 1: 1476 to 2093 Score:844 bits(2181), Expect:0.0, Method:Compositional matrix adjust., Identities:393/619(63%), Positives:488/619(78%), Gaps:1/619(0%) Query 1 GGVLWDTPSPKEYKKGDTTTGVYRIMTRGLLGSYQAGAGVMVEGVFHTLWHTTKGAALMS 60 GVLWD PSP + + G YRI +G+LG Q GAGV EG FHT+WH T+GA LM Sbjct 1476 AGVLWDVPSPPPVGRAELEDGAYRIKQKGILGYSQIGAGVYKEGTFHTMWHVTRGAVLMH 1535 Query 61 GEGRLDPYWGSVKEDRLCYGGPWKLQHKWNGQDEVQMIVVEPGKNVKNVQTKPGVFKTPE 120 R++P W VK+D + YGG WKL+ +W +EVQ++ +EPGKN + VQTKPG+F+T Sbjct 1536 KGKRIEPSWADVKKDLISYGGGWKLEGEWKEGEEVQVLALEPGKNPRAVQTKPGLFRTNT 1595 Query 121 GEIGAVTLDFPTGTSGSPIVDKNGDVIGLYGNGVIMPNGSYISAIVQGERMDEPIPAGFE 180 G IGAV+LDF GTSGSPIVDK G V+GLYGNGV+ G+Y+SAI Q E+ E P E Sbjct 1596 GTIGAVSLDFSPGTSGSPIVDKKGKVVGLYGNGVVTRGGAYVSAIAQTEKGIEDNPE-IE 1654 Query 181 PEMLRKKQITVLDLHPGAGKTRRILPQIIKEAINRRLRTAVLAPTRVVAAEMAEALRGLP 240 ++ RK+++T++DLHPGAGKT+R LP I++EAI R LRT +LAPTRVVAAEM EALRGLP Sbjct 1655 DDIFRKRRLTIMDLHPGAGKTKRYLPAIVREAIKRGLRTLILAPTRVVAAEMEEALRGLP 1714 Query 241 IRYQTSAVPREHNGNEIVDVMCHATLTHRLMSPHRVPNYNLFVMDEAHFTDPASIAARGY 300 IRYQT A+ EH G EIVD+MCHAT T RL+SP RVPNYNL +MDEAHFTDPASIAARGY Sbjct 1715 IRYQTPAIRAEHTGREIVDLMCHATFTMRLLSPIRVPNYNLIIMDEAHFTDPASIAARGY 1774 Query 301 ISTKVELGEAAAIFMTATPPGTSDPFPESNSPISDLQTEIPDRAWNSGYEWITEYTGKTV 360 IST+VE+GEAA IFMTATPPG+ DPFP+SN+PI D + EIP+R+WNSG+EW+T++ GKTV Sbjct 1775 ISTRVEMGEAAGIFMTATPPGSRDPFPQSNAPIMDEEREIPERSWNSGHEWVTDFKGKTV 1834 Query 361 WFVPSVKMGNEIALCLQRAGKKVVQLNRKSYETEYPKCKNDDWDFVITTDISEMGANFKA 420 WFVPS+K GN+IA CL++ GK+V+QL+RK++++EY K + +DWDFV+TTDISEMGANFKA Sbjct 1835 WFVPSIKTGNDIAACLRKNGKRVIQLSRKTFDSEYVKTRTNDWDFVVTTDISEMGANFKA 1894 Query 421 SRVIDSRKSVKPTIITEGEGRVILGEPSAVTAASAAQRRGRIGRNPSQVGDEYCYGGHTN 480 RVID R+ +KP I+T+GE RVIL P VT +SAAQRRGRIGRNP D+Y Y G Sbjct 1895 ERVIDPRRCMKPVILTDGEERVILAGPMPVTHSSAAQRRGRIGRNPRNENDQYIYMGEPL 1954 Query 481 EDDSNFAHWTEARIMLDNINMPNGLIAQFYQPEREKVYTMDGEYRLRGEERKNFLELLRT 540 E+D + AHW EA+++LDNIN P G+I ++PEREKV +DGEYRLRGE RK F++L+R Sbjct 1955 ENDEDCAHWKEAKMLLDNINTPEGIIPSMFEPEREKVDAIDGEYRLRGEARKTFVDLMRR 2014 Query 541 ADLPVWLAYKVAAAGVSYHDRRWCFDGPRTNTILEDNNEVEVITKLGERKILRPRWIDAR 600 DLPVWLAYKVAA G++Y DRRWCFDG R N ILE+N EVE+ TK GERK L+PRW+DAR Sbjct 2015 GDLPVWLAYKVAAEGINYADRRWCFDGTRNNQILEENVEVEIWTKEGERKKLKPRWLDAR 2074 Query 601 VYSDHQALKAFKDFASGKR 619 +YSD ALK FK+FA+G++ Sbjct 2075 IYSDPLALKEFKEFAAGRK 2093 >RecName: Full=Genome polyprotein; Contains: RecName: Full=Capsid protein C; AltName: Full=Core protein; Contains: RecName: Full=Protein prM; Contains: RecName: Full=Peptide pr; Contains: RecName: Full=Small envelope protein M; AltName: Full=Matrix protein; Contains: RecName: Full=Envelope protein E; Contains: RecName: Full=Non-structural protein 1; Short=NS1; Contains: RecName: Full=Non-structural protein 2A; Short=NS2A; Contains: RecName: Full=Serine protease subunit NS2B; AltName: Full=Flavivirin protease NS2B regulatory subunit; AltName: Full=Non-structural protein 2B; Contains: RecName: Full=Serine protease NS3; AltName: Full=Flavivirin protease NS3 catalytic subunit; AltName: Full=Non-structural protein 3; Contains: RecName: Full=Non-structural protein 4A; Short=NS4A; Contains: RecName: Full=Peptide 2k; Contains: RecName: Full=Non-structural protein 4B; Short=NS4B; Contains: RecName: Full=RNA-directed RNA polymerase NS5; AltName: Full=Non-structural protein 5 [Dengue virus 3 Singapore/8120/1995] Sequence ID: Q5UB51.1 Length: 3390 Range 1: 1475 to 2092 Score:844 bits(2180), Expect:0.0, Method:Compositional matrix adjust., Identities:392/619(63%), Positives:483/619(78%), Gaps:2/619(0%) Query 2 GVLWDTPSPKEYKKGDTTTGVYRIMTRGLLGSYQAGAGVMVEGVFHTLWHTTKGAALMSG 61 GVLWD PSP E +K + GVYRI +G+ G Q G GV EGVFHT+WH T+GA L Sbjct 1475 GVLWDVPSPPETQKAELEEGVYRIKQQGIFGKTQVGVGVQKEGVFHTMWHVTRGAVLTHN 1534 Query 62 EGRLDPYWGSVKEDRLCYGGPWKLQHKWNGQDEVQMIVVEPGKNVKNVQTKPGVFKTPEG 121 RL+P W SVK+D + YGG W+L +W +EVQ+I VEPGKN KN QT PG+F+T G Sbjct 1535 GKRLEPNWASVKKDLISYGGGWRLSAQWQKGEEVQVIAVEPGKNPKNFQTMPGIFQTTTG 1594 Query 122 EIGAVTLDFPTGTSGSPIVDKNGDVIGLYGNGVIMPNGSYISAIVQ-GERMDEPIPAGFE 180 EIGA+ LDF GTSGSPI+++ G V+GLYGNGV+ NG Y+S I Q D P P E Sbjct 1595 EIGAIALDFKPGTSGSPIINREGKVVGLYGNGVVTKNGGYVSGIAQTNAEPDGPTPE-LE 1653 Query 181 PEMLRKKQITVLDLHPGAGKTRRILPQIIKEAINRRLRTAVLAPTRVVAAEMAEALRGLP 240 EM +K+ +T++DLHPG+GKTR+ LP I++EAI RRLRT +LAPTRVVAAEM EAL+GLP Sbjct 1654 EEMFKKRNLTIMDLHPGSGKTRKYLPAIVREAIKRRLRTLILAPTRVVAAEMEEALKGLP 1713 Query 241 IRYQTSAVPREHNGNEIVDVMCHATLTHRLMSPHRVPNYNLFVMDEAHFTDPASIAARGY 300 IRYQT+A EH G EIVD+MCHAT T RL+SP RVPNYNL +MDEAHFTDPASIAARGY Sbjct 1714 IRYQTTATKSEHTGREIVDLMCHATFTMRLLSPVRVPNYNLIIMDEAHFTDPASIAARGY 1773 Query 301 ISTKVELGEAAAIFMTATPPGTSDPFPESNSPISDLQTEIPDRAWNSGYEWITEYTGKTV 360 IST+V +GEAAAIFMTATPPGT++ FP+SN+PI D + +IP+R+WNSG EWIT++ GKTV Sbjct 1774 ISTRVGMGEAAAIFMTATPPGTAEAFPQSNAPIQDEERDIPERSWNSGNEWITDFVGKTV 1833 Query 361 WFVPSVKMGNEIALCLQRAGKKVVQLNRKSYETEYPKCKNDDWDFVITTDISEMGANFKA 420 WFVPS+K GN+IA CL++ GKKV+QL+RK+++TEY K K +DWDFV+TTDISEMGANFKA Sbjct 1834 WFVPSIKAGNDIANCLRKNGKKVIQLSRKTFDTEYQKTKLNDWDFVVTTDISEMGANFKA 1893 Query 421 SRVIDSRKSVKPTIITEGEGRVILGEPSAVTAASAAQRRGRIGRNPSQVGDEYCYGGHTN 480 RVID R+ +KP I+T+G RVIL P VTAASAAQRRGR+GRNP + D+Y + G Sbjct 1894 DRVIDPRRCLKPVILTDGPERVILAGPMPVTAASAAQRRGRVGRNPQKENDQYIFTGQPL 1953 Query 481 EDDSNFAHWTEARIMLDNINMPNGLIAQFYQPEREKVYTMDGEYRLRGEERKNFLELLRT 540 +D + AHWTEA+++LDNIN P G+I ++PEREK +DGEYRL+GE RK F+EL+R Sbjct 1954 NNDEDHAHWTEAKMLLDNINTPEGIIPALFEPEREKSAAIDGEYRLKGESRKTFVELMRR 2013 Query 541 ADLPVWLAYKVAAAGVSYHDRRWCFDGPRTNTILEDNNEVEVITKLGERKILRPRWIDAR 600 DLPVWLA+KVA+ G+ Y DR+WCFDG R N ILE+N +VE+ TK GERK LRPRW+DAR Sbjct 2014 GDLPVWLAHKVASEGIKYTDRKWCFDGERNNQILEENMDVEIWTKEGERKKLRPRWLDAR 2073 Query 601 VYSDHQALKAFKDFASGKR 619 YSD ALK FKDFA+G++ Sbjct 2074 TYSDPLALKEFKDFAAGRK 2092 >RecName: Full=Genome polyprotein; Contains: RecName: Full=Capsid protein C; AltName: Full=Core protein; Contains: RecName: Full=Protein prM; Contains: RecName: Full=Peptide pr; Contains: RecName: Full=Small envelope protein M; AltName: Full=Matrix protein; Contains: RecName: Full=Envelope protein E; Contains: RecName: Full=Non-structural protein 1; Short=NS1; Contains: RecName: Full=Non-structural protein 2A; Short=NS2A; Contains: RecName: Full=Serine protease subunit NS2B; AltName: Full=Flavivirin protease NS2B regulatory subunit; AltName: Full=Non-structural protein 2B; Contains: RecName: Full=Serine protease NS3; AltName: Full=Flavivirin protease NS3 catalytic subunit; AltName: Full=Non-structural protein 3; Contains: RecName: Full=Non-structural protein 4A; Short=NS4A; Contains: RecName: Full=Peptide 2k; Contains: RecName: Full=Non-structural protein 4B; Short=NS4B; Contains: RecName: Full=RNA-directed RNA polymerase NS5; AltName: Full=Non-structural protein 5 [Dengue virus 2 Thailand/16681/84] Sequence ID: P29990.1 Length: 3391 Range 1: 1476 to 2093 Score:844 bits(2180), Expect:0.0, Method:Compositional matrix adjust., Identities:392/619(63%), Positives:487/619(78%), Gaps:1/619(0%) Query 1 GGVLWDTPSPKEYKKGDTTTGVYRIMTRGLLGSYQAGAGVMVEGVFHTLWHTTKGAALMS 60 GVLWD PSP K + G YRI +G+LG Q GAGV EG FHT+WH T+GA LM Sbjct 1476 AGVLWDVPSPPPMGKAELEDGAYRIKQKGILGYSQIGAGVYKEGTFHTMWHVTRGAVLMH 1535 Query 61 GEGRLDPYWGSVKEDRLCYGGPWKLQHKWNGQDEVQMIVVEPGKNVKNVQTKPGVFKTPE 120 R++P W VK+D + YGG WKL+ +W +EVQ++ +EPGKN + VQTKPG+FKT Sbjct 1536 KGKRIEPSWADVKKDLISYGGGWKLEGEWKEGEEVQVLALEPGKNPRAVQTKPGLFKTNA 1595 Query 121 GEIGAVTLDFPTGTSGSPIVDKNGDVIGLYGNGVIMPNGSYISAIVQGERMDEPIPAGFE 180 G IGAV+LDF GTSGSPI+DK G V+GLYGNGV+ +G+Y+SAI Q E+ E P E Sbjct 1596 GTIGAVSLDFSPGTSGSPIIDKKGKVVGLYGNGVVTRSGAYVSAIAQTEKSIEDNPE-IE 1654 Query 181 PEMLRKKQITVLDLHPGAGKTRRILPQIIKEAINRRLRTAVLAPTRVVAAEMAEALRGLP 240 ++ RK+++T++DLHPGAGKT+R LP I++EAI R LRT +LAPTRVVAAEM EALRGLP Sbjct 1655 DDIFRKRRLTIMDLHPGAGKTKRYLPAIVREAIKRGLRTLILAPTRVVAAEMEEALRGLP 1714 Query 241 IRYQTSAVPREHNGNEIVDVMCHATLTHRLMSPHRVPNYNLFVMDEAHFTDPASIAARGY 300 IRYQT A+ EH G EIVD+MCHAT T RL+SP RVPNYNL +MDEAHFTDPASIAARGY Sbjct 1715 IRYQTPAIRAEHTGREIVDLMCHATFTMRLLSPVRVPNYNLIIMDEAHFTDPASIAARGY 1774 Query 301 ISTKVELGEAAAIFMTATPPGTSDPFPESNSPISDLQTEIPDRAWNSGYEWITEYTGKTV 360 IST+VE+GEAA IFMTATPPG+ DPFP+SN+PI D + EIP+R+WNSG+EW+T++ GKTV Sbjct 1775 ISTRVEMGEAAGIFMTATPPGSRDPFPQSNAPIIDEEREIPERSWNSGHEWVTDFKGKTV 1834 Query 361 WFVPSVKMGNEIALCLQRAGKKVVQLNRKSYETEYPKCKNDDWDFVITTDISEMGANFKA 420 WFVPS+K GN+IA CL + GKKV+QL+RK++++EY K + +DWDFV+TTDISEMGANFKA Sbjct 1835 WFVPSIKAGNDIAACLSKNGKKVIQLSRKTFDSEYAKTRTNDWDFVVTTDISEMGANFKA 1894 Query 421 SRVIDSRKSVKPTIITEGEGRVILGEPSAVTAASAAQRRGRIGRNPSQVGDEYCYGGHTN 480 RVID R+ +KP I+T+GE RVIL P VT +SAAQRRGRIGRNP D+Y Y G Sbjct 1895 ERVIDPRRCMKPVILTDGEERVILAGPMPVTHSSAAQRRGRIGRNPKNENDQYIYMGEPL 1954 Query 481 EDDSNFAHWTEARIMLDNINMPNGLIAQFYQPEREKVYTMDGEYRLRGEERKNFLELLRT 540 E+D + AHW EA+++LDNIN P G+I ++PEREKV +DGEYRLRGE R F++L+R Sbjct 1955 ENDEDCAHWKEAKMLLDNINTPEGIIPSMFEPEREKVDAIDGEYRLRGEARTTFVDLMRR 2014 Query 541 ADLPVWLAYKVAAAGVSYHDRRWCFDGPRTNTILEDNNEVEVITKLGERKILRPRWIDAR 600 DLPVWLAY+VAA G++Y DRRWCFDG + N ILE+N EVE+ TK GERK L+PRW+DAR Sbjct 2015 GDLPVWLAYRVAAEGINYADRRWCFDGVKNNQILEENVEVEIWTKEGERKKLKPRWLDAR 2074 Query 601 VYSDHQALKAFKDFASGKR 619 +YSD ALK FK+FA+G++ Sbjct 2075 IYSDPLALKEFKEFAAGRK 2093 >RecName: Full=Genome polyprotein; Contains: RecName: Full=Capsid protein C; AltName: Full=Core protein; Contains: RecName: Full=Protein prM; Contains: RecName: Full=Peptide pr; Contains: RecName: Full=Small envelope protein M; AltName: Full=Matrix protein; Contains: RecName: Full=Envelope protein E; Contains: RecName: Full=Non-structural protein 1; Short=NS1; Contains: RecName: Full=Non-structural protein 2A; Short=NS2A; Contains: RecName: Full=Serine protease subunit NS2B; AltName: Full=Flavivirin protease NS2B regulatory subunit; AltName: Full=Non-structural protein 2B; Contains: RecName: Full=Serine protease NS3; AltName: Full=Flavivirin protease NS3 catalytic subunit; AltName: Full=Non-structural protein 3; Contains: RecName: Full=Non-structural protein 4A; Short=NS4A; Contains: RecName: Full=Peptide 2k; Contains: RecName: Full=Non-structural protein 4B; Short=NS4B; Contains: RecName: Full=RNA-directed RNA polymerase NS5; AltName: Full=Non-structural protein 5 [Dengue virus 2 16681-PDK53] Sequence ID: P29991.1 Length: 3391 Range 1: 1476 to 2093 Score:843 bits(2177), Expect:0.0, Method:Compositional matrix adjust., Identities:391/619(63%), Positives:488/619(78%), Gaps:1/619(0%) Query 1 GGVLWDTPSPKEYKKGDTTTGVYRIMTRGLLGSYQAGAGVMVEGVFHTLWHTTKGAALMS 60 GVLWD PSP K + G YRI +G+LG Q GAGV EG FHT+WH T+GA LM Sbjct 1476 AGVLWDVPSPPPMGKAELEDGAYRIKQKGILGYSQIGAGVYKEGTFHTMWHVTRGAVLMH 1535 Query 61 GEGRLDPYWGSVKEDRLCYGGPWKLQHKWNGQDEVQMIVVEPGKNVKNVQTKPGVFKTPE 120 R++P W VK+D + YGG WKL+ +W +EVQ++ ++PGKN + VQTKPG+FKT Sbjct 1536 KGKRIEPSWADVKKDLISYGGGWKLEGEWKEGEEVQVLALDPGKNPRAVQTKPGLFKTNA 1595 Query 121 GEIGAVTLDFPTGTSGSPIVDKNGDVIGLYGNGVIMPNGSYISAIVQGERMDEPIPAGFE 180 G IGAV+LDF GTSGSPI+DK G V+GLYGNGV+ +G+Y+SAI Q E+ E P E Sbjct 1596 GTIGAVSLDFSPGTSGSPIIDKKGKVVGLYGNGVVTRSGAYVSAIAQTEKSIEDNPE-IE 1654 Query 181 PEMLRKKQITVLDLHPGAGKTRRILPQIIKEAINRRLRTAVLAPTRVVAAEMAEALRGLP 240 ++ RK+++T++DLHPGAGKT+R LP I++EAI R LRT +LAPTRVVAAEM EALRGLP Sbjct 1655 DDIFRKRRLTIMDLHPGAGKTKRYLPAIVREAIKRGLRTLILAPTRVVAAEMEEALRGLP 1714 Query 241 IRYQTSAVPREHNGNEIVDVMCHATLTHRLMSPHRVPNYNLFVMDEAHFTDPASIAARGY 300 IRYQT A+ EH G EIVD+MCHAT T RL+SP RVPNYNL +MDEAHFTDPASIAARGY Sbjct 1715 IRYQTPAIRAEHTGREIVDLMCHATFTMRLLSPVRVPNYNLIIMDEAHFTDPASIAARGY 1774 Query 301 ISTKVELGEAAAIFMTATPPGTSDPFPESNSPISDLQTEIPDRAWNSGYEWITEYTGKTV 360 IST+VE+GEAA IFMTATPPG+ DPFP+SN+PI D + EIP+R+WNSG+EW+T++ GKTV Sbjct 1775 ISTRVEMGEAAGIFMTATPPGSRDPFPQSNAPIIDEEREIPERSWNSGHEWVTDFKGKTV 1834 Query 361 WFVPSVKMGNEIALCLQRAGKKVVQLNRKSYETEYPKCKNDDWDFVITTDISEMGANFKA 420 WFVPS+K GN+IA CL++ GKKV+QL+RK++++EY K + +DWDFV+TTDISEMGANFKA Sbjct 1835 WFVPSIKAGNDIAACLRKNGKKVIQLSRKTFDSEYVKTRTNDWDFVVTTDISEMGANFKA 1894 Query 421 SRVIDSRKSVKPTIITEGEGRVILGEPSAVTAASAAQRRGRIGRNPSQVGDEYCYGGHTN 480 RVID R+ +KP I+T+GE RVIL P VT +SAAQRRGRIGRNP D+Y Y G Sbjct 1895 ERVIDPRRCMKPVILTDGEERVILAGPMPVTHSSAAQRRGRIGRNPKNENDQYIYMGEPL 1954 Query 481 EDDSNFAHWTEARIMLDNINMPNGLIAQFYQPEREKVYTMDGEYRLRGEERKNFLELLRT 540 E+D + AHW EA+++LDNIN P G+I ++PEREKV +DGEYRLRGE R F++L+R Sbjct 1955 ENDEDCAHWKEAKMLLDNINTPEGIIPSMFEPEREKVDAIDGEYRLRGEARTTFVDLMRR 2014 Query 541 ADLPVWLAYKVAAAGVSYHDRRWCFDGPRTNTILEDNNEVEVITKLGERKILRPRWIDAR 600 DLPVWLAY+VAA G++Y DRRWCFDG + N ILE+N EVE+ TK GERK L+PRW+DAR Sbjct 2015 GDLPVWLAYRVAAEGINYADRRWCFDGVKNNQILEENVEVEIWTKEGERKKLKPRWLDAR 2074 Query 601 VYSDHQALKAFKDFASGKR 619 +YSD ALK FK+FA+G++ Sbjct 2075 IYSDPLALKEFKEFAAGRK 2093 >RecName: Full=Genome polyprotein; Contains: RecName: Full=Capsid protein C; AltName: Full=Core protein; Contains: RecName: Full=Protein prM; Contains: RecName: Full=Peptide pr; Contains: RecName: Full=Small envelope protein M; AltName: Full=Matrix protein; Contains: RecName: Full=Envelope protein E; Contains: RecName: Full=Non-structural protein 1; Short=NS1; Contains: RecName: Full=Non-structural protein 2A; Short=NS2A; Contains: RecName: Full=Serine protease subunit NS2B; AltName: Full=Flavivirin protease NS2B regulatory subunit; AltName: Full=Non-structural protein 2B; Contains: RecName: Full=Serine protease NS3; AltName: Full=Flavivirin protease NS3 catalytic subunit; AltName: Full=Non-structural protein 3; Contains: RecName: Full=Non-structural protein 4A; Short=NS4A; Contains: RecName: Full=Peptide 2k; Contains: RecName: Full=Non-structural protein 4B; Short=NS4B; Contains: RecName: Full=RNA-directed RNA polymerase NS5; AltName: Full=Non-structural protein 5 [Dengue virus 2 Thailand/NGS-C/1944] Sequence ID: P14340.2 Length: 3391 Range 1: 1476 to 2093 Score:842 bits(2176), Expect:0.0, Method:Compositional matrix adjust., Identities:391/619(63%), Positives:489/619(78%), Gaps:1/619(0%) Query 1 GGVLWDTPSPKEYKKGDTTTGVYRIMTRGLLGSYQAGAGVMVEGVFHTLWHTTKGAALMS 60 GVLWD PSP K + G YRI +G+LG Q GAGV EG FHT+WH T+GA LM Sbjct 1476 AGVLWDVPSPPPVGKAELEDGAYRIKQKGILGYSQIGAGVYKEGTFHTMWHVTRGAVLMH 1535 Query 61 GEGRLDPYWGSVKEDRLCYGGPWKLQHKWNGQDEVQMIVVEPGKNVKNVQTKPGVFKTPE 120 R++P W VK+D + YGG WKL+ +W +EVQ++ +EPGKN + VQTKPG+FKT Sbjct 1536 KGKRIEPSWADVKKDLISYGGGWKLEGEWKEGEEVQVLALEPGKNPRAVQTKPGLFKTNA 1595 Query 121 GEIGAVTLDFPTGTSGSPIVDKNGDVIGLYGNGVIMPNGSYISAIVQGERMDEPIPAGFE 180 G IGAV+LDF GTSGSPI+DK G V+GLYGNGV+ +G+Y+SAI Q E+ E P E Sbjct 1596 GTIGAVSLDFSPGTSGSPIIDKKGKVVGLYGNGVVTRSGAYVSAIAQTEKSIEDNPE-IE 1654 Query 181 PEMLRKKQITVLDLHPGAGKTRRILPQIIKEAINRRLRTAVLAPTRVVAAEMAEALRGLP 240 ++ RK+++T++DLHPGAGKT+R LP I++EAI R LRT +LAPTRVVAAEM EALRGLP Sbjct 1655 DDIFRKRKLTIMDLHPGAGKTKRYLPAIVREAIKRGLRTLILAPTRVVAAEMEEALRGLP 1714 Query 241 IRYQTSAVPREHNGNEIVDVMCHATLTHRLMSPHRVPNYNLFVMDEAHFTDPASIAARGY 300 IRYQT A+ EH G EIVD+MCHAT T RL+SP RVPNYNL +MDEAHFTDPASIAARGY Sbjct 1715 IRYQTPAIRAEHTGREIVDLMCHATFTMRLLSPVRVPNYNLIIMDEAHFTDPASIAARGY 1774 Query 301 ISTKVELGEAAAIFMTATPPGTSDPFPESNSPISDLQTEIPDRAWNSGYEWITEYTGKTV 360 IST+VE+GEAA IFMTATPPG+ DPFP+SN+PI D + EIP+R+W+SG+EW+T++ GKTV Sbjct 1775 ISTRVEMGEAAGIFMTATPPGSRDPFPQSNAPIMDEEREIPERSWSSGHEWVTDFKGKTV 1834 Query 361 WFVPSVKMGNEIALCLQRAGKKVVQLNRKSYETEYPKCKNDDWDFVITTDISEMGANFKA 420 WFVPS+K GN+IA CL++ GKKV+QL+RK++++EY K + +DWDFV+TTDISEMGANFKA Sbjct 1835 WFVPSIKAGNDIAACLRKNGKKVIQLSRKTFDSEYVKTRTNDWDFVVTTDISEMGANFKA 1894 Query 421 SRVIDSRKSVKPTIITEGEGRVILGEPSAVTAASAAQRRGRIGRNPSQVGDEYCYGGHTN 480 RVID R+ +KP I+T+GE RVIL P VT +SAAQRRGRIGRNP D+Y Y G Sbjct 1895 ERVIDPRRCMKPVILTDGEERVILAGPMPVTHSSAAQRRGRIGRNPKNENDQYIYMGEPL 1954 Query 481 EDDSNFAHWTEARIMLDNINMPNGLIAQFYQPEREKVYTMDGEYRLRGEERKNFLELLRT 540 E+D + AHW EA+++LDNIN P G+I ++PEREKV +DGEYRLRGE RK F++L+R Sbjct 1955 ENDEDCAHWKEAKMLLDNINTPEGIIPSMFEPEREKVDAIDGEYRLRGEARKTFVDLMRR 2014 Query 541 ADLPVWLAYKVAAAGVSYHDRRWCFDGPRTNTILEDNNEVEVITKLGERKILRPRWIDAR 600 DLPVWLAY+VAA G++Y DRRWCFDG + N ILE+N EVE+ TK GERK L+PRW+DA+ Sbjct 2015 GDLPVWLAYRVAAEGINYADRRWCFDGIKNNQILEENVEVEIWTKEGERKKLKPRWLDAK 2074 Query 601 VYSDHQALKAFKDFASGKR 619 +YSD ALK FK+FA+G++ Sbjct 2075 IYSDPLALKEFKEFAAGRK 2093 >RecName: Full=Genome polyprotein; Contains: RecName: Full=Capsid protein C; AltName: Full=Core protein; Contains: RecName: Full=Protein prM; Contains: RecName: Full=Peptide pr; Contains: RecName: Full=Small envelope protein M; AltName: Full=Matrix protein; Contains: RecName: Full=Envelope protein E; Contains: RecName: Full=Non-structural protein 1; Short=NS1; Contains: RecName: Full=Non-structural protein 2A; Short=NS2A; Contains: RecName: Full=Serine protease subunit NS2B; AltName: Full=Flavivirin protease NS2B regulatory subunit; AltName: Full=Non-structural protein 2B; Contains: RecName: Full=Serine protease NS3; AltName: Full=Flavivirin protease NS3 catalytic subunit; AltName: Full=Non-structural protein 3; Contains: RecName: Full=Non-structural protein 4A; Short=NS4A; Contains: RecName: Full=Peptide 2k; Contains: RecName: Full=Non-structural protein 4B; Short=NS4B; Contains: RecName: Full=RNA-directed RNA polymerase NS5; AltName: Full=Non-structural protein 5 [Dengue virus 3 Martinique/1243/1999] Sequence ID: Q6YMS3.1 Length: 3390 Range 1: 1475 to 2092 Score:842 bits(2174), Expect:0.0, Method:Compositional matrix adjust., Identities:392/619(63%), Positives:482/619(77%), Gaps:2/619(0%) Query 2 GVLWDTPSPKEYKKGDTTTGVYRIMTRGLLGSYQAGAGVMVEGVFHTLWHTTKGAALMSG 61 GVLWD PSP E +K + GVYRI +G+ G Q G GV EGVFHT+WH T+GA L Sbjct 1475 GVLWDVPSPPETQKAELEEGVYRIKQQGIFGKTQVGVGVQKEGVFHTMWHVTRGAVLTYN 1534 Query 62 EGRLDPYWGSVKEDRLCYGGPWKLQHKWNGQDEVQMIVVEPGKNVKNVQTKPGVFKTPEG 121 RL+P W SVK+D + YGG W+L +W +EVQ+I VEPGKN KN QT PG F+T G Sbjct 1535 GKRLEPNWASVKKDLISYGGGWRLSAQWQKGEEVQVIAVEPGKNPKNFQTMPGTFQTTTG 1594 Query 122 EIGAVTLDFPTGTSGSPIVDKNGDVIGLYGNGVIMPNGSYISAIVQ-GERMDEPIPAGFE 180 EIGA+ LDF GTSGSPI+++ G V+GLYGNGV+ NG Y+S I Q D P P E Sbjct 1595 EIGAIALDFKPGTSGSPIINREGKVVGLYGNGVVTKNGGYVSGIAQTNAEPDGPTPE-LE 1653 Query 181 PEMLRKKQITVLDLHPGAGKTRRILPQIIKEAINRRLRTAVLAPTRVVAAEMAEALRGLP 240 EM +K+ +T++DLHPG+GKTR+ LP I++EAI RRLRT +LAPTRVVAAEM EAL+GLP Sbjct 1654 EEMFKKRNLTIMDLHPGSGKTRKYLPAIVREAIKRRLRTLILAPTRVVAAEMEEALKGLP 1713 Query 241 IRYQTSAVPREHNGNEIVDVMCHATLTHRLMSPHRVPNYNLFVMDEAHFTDPASIAARGY 300 IRYQT+A EH G EIVD+MCHAT T RL+SP RVPNYNL +MDEAHFTDPASIAARGY Sbjct 1714 IRYQTTATKSEHTGREIVDLMCHATFTMRLLSPVRVPNYNLIIMDEAHFTDPASIAARGY 1773 Query 301 ISTKVELGEAAAIFMTATPPGTSDPFPESNSPISDLQTEIPDRAWNSGYEWITEYTGKTV 360 IST+V +GEAAAIFMTATPPGT+D FP+SN+PI D + +IP+R+WNSG EWIT++ GKTV Sbjct 1774 ISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGNEWITDFAGKTV 1833 Query 361 WFVPSVKMGNEIALCLQRAGKKVVQLNRKSYETEYPKCKNDDWDFVITTDISEMGANFKA 420 WFVPS+K GN+IA CL++ GKKV+QL+RK+++TEY K K +DWDFV+TTDISEMGANFKA Sbjct 1834 WFVPSIKAGNDIANCLRKNGKKVIQLSRKTFDTEYQKTKLNDWDFVVTTDISEMGANFKA 1893 Query 421 SRVIDSRKSVKPTIITEGEGRVILGEPSAVTAASAAQRRGRIGRNPSQVGDEYCYGGHTN 480 RVID R+ +KP I+T+G RVIL P VTAASAAQRRGR+GRNP + D+Y + G Sbjct 1894 DRVIDPRRCLKPVILTDGPERVILAGPMPVTAASAAQRRGRVGRNPQKENDQYIFTGQPL 1953 Query 481 EDDSNFAHWTEARIMLDNINMPNGLIAQFYQPEREKVYTMDGEYRLRGEERKNFLELLRT 540 +D + AHWTEA+++LDNIN P G+I ++PEREK +DGEYRL+GE RK F+EL+R Sbjct 1954 NNDEDHAHWTEAKMLLDNINTPEGIIPALFEPEREKSAAIDGEYRLKGESRKTFVELMRR 2013 Query 541 ADLPVWLAYKVAAAGVSYHDRRWCFDGPRTNTILEDNNEVEVITKLGERKILRPRWIDAR 600 DLPVWLA+KVA+ G+ Y DR+WCFDG R N ILE+N +VE+ TK GE+K LRPRW+DAR Sbjct 2014 GDLPVWLAHKVASEGIKYTDRKWCFDGQRNNQILEENMDVEIWTKEGEKKKLRPRWLDAR 2073 Query 601 VYSDHQALKAFKDFASGKR 619 YSD ALK FKDFA+G++ Sbjct 2074 TYSDPLALKEFKDFAAGRK 2092 >RecName: Full=Genome polyprotein; Contains: RecName: Full=Capsid protein C; AltName: Full=Core protein; Contains: RecName: Full=Protein prM; Contains: RecName: Full=Peptide pr; Contains: RecName: Full=Small envelope protein M; AltName: Full=Matrix protein; Contains: RecName: Full=Envelope protein E; Contains: RecName: Full=Non-structural protein 1; Short=NS1; Contains: RecName: Full=Non-structural protein 2A; Short=NS2A; Contains: RecName: Full=Serine protease subunit NS2B; AltName: Full=Flavivirin protease NS2B regulatory subunit; AltName: Full=Non-structural protein 2B; Contains: RecName: Full=Serine protease NS3; AltName: Full=Flavivirin protease NS3 catalytic subunit; AltName: Full=Non-structural protein 3; Contains: RecName: Full=Non-structural protein 4A; Short=NS4A; Contains: RecName: Full=Peptide 2k; Contains: RecName: Full=Non-structural protein 4B; Short=NS4B; Contains: RecName: Full=RNA-directed RNA polymerase NS5; AltName: Full=Non-structural protein 5 [Dengue virus 3 China/80-2/1980] Sequence ID: Q99D35.1 Length: 3390 Range 1: 1475 to 2092 Score:841 bits(2172), Expect:0.0, Method:Compositional matrix adjust., Identities:391/619(63%), Positives:481/619(77%), Gaps:2/619(0%) Query 2 GVLWDTPSPKEYKKGDTTTGVYRIMTRGLLGSYQAGAGVMVEGVFHTLWHTTKGAALMSG 61 GVLWD PSP E +K + GVYRI +G+ G Q G GV EGVFHT+WH T+GA L Sbjct 1475 GVLWDVPSPPETQKAELEEGVYRIKQQGIFGKTQVGVGVQKEGVFHTMWHVTRGAVLTHN 1534 Query 62 EGRLDPYWGSVKEDRLCYGGPWKLQHKWNGQDEVQMIVVEPGKNVKNVQTKPGVFKTPEG 121 RL+P W SVK+D + YGG W+L +W +EVQ+I VEPGKN KN QT PG+F+T G Sbjct 1535 GKRLEPNWASVKKDLISYGGGWRLSAQWQKGEEVQVIAVEPGKNPKNFQTMPGIFQTTTG 1594 Query 122 EIGAVTLDFPTGTSGSPIVDKNGDVIGLYGNGVIMPNGSYISAIVQ-GERMDEPIPAGFE 180 EIGA+ LDF GTSGSPI+++ G V+GLYGNGV+ NG Y+S I Q D P P E Sbjct 1595 EIGAIALDFKPGTSGSPIINREGKVVGLYGNGVVTKNGGYVSGIAQTNAEPDGPTPE-LE 1653 Query 181 PEMLRKKQITVLDLHPGAGKTRRILPQIIKEAINRRLRTAVLAPTRVVAAEMAEALRGLP 240 EM +K+ +T++DLHPG+GKTR+ LP I++EAI RRLRT +LAPTRVVAAEM EAL+GLP Sbjct 1654 EEMFKKRNLTIMDLHPGSGKTRKYLPAIVREAIKRRLRTLILAPTRVVAAEMEEALKGLP 1713 Query 241 IRYQTSAVPREHNGNEIVDVMCHATLTHRLMSPHRVPNYNLFVMDEAHFTDPASIAARGY 300 IRYQT+A EH G EIVD+MCHAT T RL+SP RVPNYNL +MDEAHFTDPASIAARGY Sbjct 1714 IRYQTTATKSEHTGREIVDLMCHATFTMRLLSPVRVPNYNLIIMDEAHFTDPASIAARGY 1773 Query 301 ISTKVELGEAAAIFMTATPPGTSDPFPESNSPISDLQTEIPDRAWNSGYEWITEYTGKTV 360 IST+V +GEAAAIFMTATPPGT+D FP+SN+PI D + +IP+R+WNSG EWIT++ GKTV Sbjct 1774 ISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGNEWITDFVGKTV 1833 Query 361 WFVPSVKMGNEIALCLQRAGKKVVQLNRKSYETEYPKCKNDDWDFVITTDISEMGANFKA 420 WFVPS+K GN+IA CL++ GKKV+QL+RK+++TEY K K +DWDFV+TTDISEMGANFKA Sbjct 1834 WFVPSIKAGNDIANCLRKNGKKVIQLSRKTFDTEYQKTKLNDWDFVVTTDISEMGANFKA 1893 Query 421 SRVIDSRKSVKPTIITEGEGRVILGEPSAVTAASAAQRRGRIGRNPSQVGDEYCYGGHTN 480 RVID R+ +KP I+T+G RVIL P VT ASAAQRRGR+GRNP + D+Y + G Sbjct 1894 DRVIDPRRCLKPVILTDGPERVILAGPMPVTVASAAQRRGRVGRNPQKENDQYIFMGQPL 1953 Query 481 EDDSNFAHWTEARIMLDNINMPNGLIAQFYQPEREKVYTMDGEYRLRGEERKNFLELLRT 540 D + AHWTEA+++LDNIN P G+I ++PEREK +DGEYRL+GE RK F+EL+R Sbjct 1954 NKDEDHAHWTEAKMLLDNINTPEGIIPALFEPEREKSAAIDGEYRLKGESRKTFVELMRR 2013 Query 541 ADLPVWLAYKVAAAGVSYHDRRWCFDGPRTNTILEDNNEVEVITKLGERKILRPRWIDAR 600 DLPVWLA+KVA+ G+ Y DR+WCFDG R N ILE+N +VE+ TK GE+K LRPRW+DAR Sbjct 2014 GDLPVWLAHKVASEGIKYTDRKWCFDGERNNQILEENMDVEIWTKEGEKKKLRPRWLDAR 2073 Query 601 VYSDHQALKAFKDFASGKR 619 YSD ALK FKDFA+G++ Sbjct 2074 TYSDPLALKEFKDFAAGRK 2092 >RecName: Full=Genome polyprotein; Contains: RecName: Full=Capsid protein C; AltName: Full=Core protein; Contains: RecName: Full=Protein prM; Contains: RecName: Full=Peptide pr; Contains: RecName: Full=Small envelope protein M; AltName: Full=Matrix protein; Contains: RecName: Full=Envelope protein E; Contains: RecName: Full=Non-structural protein 1; Short=NS1; Contains: RecName: Full=Non-structural protein 2A; Short=NS2A; Contains: RecName: Full=Serine protease subunit NS2B; AltName: Full=Flavivirin protease NS2B regulatory subunit; AltName: Full=Non-structural protein 2B; Contains: RecName: Full=Serine protease NS3; AltName: Full=Flavivirin protease NS3 catalytic subunit; AltName: Full=Non-structural protein 3; Contains: RecName: Full=Non-structural protein 4A; Short=NS4A; Contains: RecName: Full=Peptide 2k; Contains: RecName: Full=Non-structural protein 4B; Short=NS4B; Contains: RecName: Full=RNA-directed RNA polymerase NS5; AltName: Full=NS5 [Kokobera virus] Sequence ID: Q32ZD5.1 Length: 3410 Range 1: 1493 to 2108 Score:838 bits(2164), Expect:0.0, Method:Compositional matrix adjust., Identities:381/619(62%), Positives:484/619(78%), Gaps:3/619(0%) Query 1 GGVLWDTPSPKEYKKGDTTTGVYRIMTRGLLGSYQAGAGVMVEGVFHTLWHTTKGAALMS 60 G LWD PSP+E K GVYRI +R L G Q GAGVMV+G FHT+WH T+GA L + Sbjct 1493 AGALWDIPSPREAKPAKVEDGVYRIFSRKLFGESQIGAGVMVKGTFHTMWHVTRGAVLKA 1552 Query 61 GEGRLDPYWGSVKEDRLCYGGPWKLQHKWNGQDEVQMIVVEPGKNVKNVQTKPGVFKTPE 120 GEG L+P W V++D +CYGG WKL+ W+G +EVQ+I +EPGK V+++QTKPG+FKT E Sbjct 1553 GEGLLEPAWADVRKDLICYGGNWKLEEHWDGNEEVQLIALEPGKKVRHIQTKPGIFKTSE 1612 Query 121 GEIGAVTLDFPTGTSGSPIVDKNGDVIGLYGNGVIMPNGSYISAIVQGERMDEPIPAGFE 180 GEIGA+ LD GTSGSPIV+KNG+V+GLYGNGV++ Y+SAI Q E + + A E Sbjct 1613 GEIGALDLDCMAGTSGSPIVNKNGEVVGLYGNGVLIKGDRYVSAISQKENVGQEDGAEIE 1672 Query 181 PEMLRKKQITVLDLHPGAGKTRRILPQIIKEAINRRLRTAVLAPTRVVAAEMAEALRGLP 240 RK+++TVLDLHPGAGKTRR+LPQ+++EA+ +RLRT +LAPTRVVA+EM EALRG P Sbjct 1673 DNWFRKRELTVLDLHPGAGKTRRVLPQLVREAVKKRLRTVILAPTRVVASEMYEALRGEP 1732 Query 241 IRYQTSAVPREHNGNEIVDVMCHATLTHRLMSPHRVPNYNLFVMDEAHFTDPASIAARGY 300 IRY T AV E GNEIVD MCH+T T +L RVPNYNL++MDEAHF DPAS+AARGY Sbjct 1733 IRYMTPAVQSERTGNEIVDFMCHSTFTMKLFQGVRVPNYNLYIMDEAHFLDPASVAARGY 1792 Query 301 ISTKVELGEAAAIFMTATPPGTSDPFPESNSPISDLQTEIPDRAWNSGYEWITEYTGKTV 360 I T+V +G+A AIFMTATPPGT++ FP SNSPI D +T IPD+AWNSGYEWI E+ G+TV Sbjct 1793 IETRVSMGDAGAIFMTATPPGTTEAFPPSNSPIIDEETRIPDKAWNSGYEWIIEFDGRTV 1852 Query 361 WFVPSVKMGNEIALCLQRAGKKVVQLNRKSYETEYPKCKNDDWDFVITTDISEMGANFKA 420 WFV S+K G EI CLQ+AGKKV+ LNRK++E+EYPKCK++ WDFVITTDISEMGANFKA Sbjct 1853 WFVHSIKQGAEIGTCLQKAGKKVLYLNRKTFESEYPKCKSEKWDFVITTDISEMGANFKA 1912 Query 421 SRVIDSRKSVKPTIITEGEGRVILGEPSAVTAASAAQRRGRIGRNPSQVGDEYCYGGHTN 480 RVID RK++KP ++ +GRV + P A+T ASAAQRRGRIGRNP ++GD Y Y G+ + Sbjct 1913 DRVIDPRKTIKPILL---DGRVSMQGPIAITPASAAQRRGRIGRNPEKLGDIYAYSGNVS 1969 Query 481 EDDSNFAHWTEARIMLDNINMPNGLIAQFYQPEREKVYTMDGEYRLRGEERKNFLELLRT 540 D+ WTEAR++LDN+++ G++AQ Y PEREK +GE++L+ +RK F EL+RT Sbjct 1970 SDNEGHVSWTEARMLLDNVHVQGGVVAQLYTPEREKTEAYEGEFKLKTNQRKVFSELIRT 2029 Query 541 ADLPVWLAYKVAAAGVSYHDRRWCFDGPRTNTILEDNNEVEVITKLGERKILRPRWIDAR 600 DLPVWLA++VA+A V YHDR+WCFDGP + +LE+N E+EV T+ G+R++L+PRW+D R Sbjct 2030 GDLPVWLAFQVASANVEYHDRKWCFDGPNEHLLLENNQEIEVWTRQGQRRVLKPRWLDGR 2089 Query 601 VYSDHQALKAFKDFASGKR 619 + SDH LK+FK+FASGKR Sbjct 2090 ITSDHLNLKSFKEFASGKR 2108 >RecName: Full=Genome polyprotein; Contains: RecName: Full=Capsid protein C; AltName: Full=Core protein; Contains: RecName: Full=Protein prM; Contains: RecName: Full=Peptide pr; Contains: RecName: Full=Small envelope protein M; AltName: Full=Matrix protein; Contains: RecName: Full=Envelope protein E; Contains: RecName: Full=Non-structural protein 1; Short=NS1; Contains: RecName: Full=Non-structural protein 2A; Short=NS2A; Contains: RecName: Full=Serine protease subunit NS2B; AltName: Full=Flavivirin protease NS2B regulatory subunit; AltName: Full=Non-structural protein 2B; Contains: RecName: Full=Serine protease NS3; AltName: Full=Flavivirin protease NS3 catalytic subunit; AltName: Full=Non-structural protein 3; Contains: RecName: Full=Non-structural protein 4A; Short=NS4A; Contains: RecName: Full=Peptide 2k; Contains: RecName: Full=Non-structural protein 4B; Short=NS4B; Contains: RecName: Full=RNA-directed RNA polymerase NS5; AltName: Full=Non-structural protein 5 [Dengue virus 2 Puerto Rico/PR159-S1/1969] Sequence ID: P12823.1 Length: 3388 Range 1: 1476 to 2090 Score:837 bits(2162), Expect:0.0, Method:Compositional matrix adjust., Identities:392/619(63%), Positives:487/619(78%), Gaps:4/619(0%) Query 1 GGVLWDTPSPKEYKKGDTTTGVYRIMTRGLLGSYQAGAGVMVEGVFHTLWHTTKGAALMS 60 GVLWD PSP K + G YRI +G+LG Q GAGV EG FHT+WH T+GA LM Sbjct 1476 AGVLWDVPSPPPVGKAELEDGAYRIKQKGILGYSQIGAGVYKEGTFHTMWHVTRGAVLMH 1535 Query 61 GEGRLDPYWGSVKEDRLCYGGPWKLQHKWNGQDEVQMIVVEPGKNVKNVQTKPGVFKTPE 120 R++P W VK+D + YGG WKL+ +W +EVQ++ +EPGKN + VQTKPG+F+T Sbjct 1536 KGKRIEPSWADVKKDLISYGGGWKLEGEWKEGEEVQVLALEPGKNPRAVQTKPGLFRTNT 1595 Query 121 GEIGAVTLDFPTGTSGSPIVDKNGDVIGLYGNGVIMPNGSYISAIVQGERMDEPIPAGFE 180 G IGAV+LDF GTSGSPIVDK G V+GLYGNGV+ +G+Y+SAI Q E+ E P E Sbjct 1596 GTIGAVSLDFSPGTSGSPIVDKKGKVVGLYGNGVVTRSGAYVSAIAQTEKSIEDNPE-IE 1654 Query 181 PEMLRKKQITVLDLHPGAGKTRRILPQIIKEAINRRLRTAVLAPTRVVAAEMAEALRGLP 240 ++ RK+++T++DLHPGAGKT+R LP I++EAI R LRT +LAPTRVVAAEM EALRGLP Sbjct 1655 DDIFRKRRLTIMDLHPGAGKTKRYLPAIVREAIKRGLRTLILAPTRVVAAEMEEALRGLP 1714 Query 241 IRYQTSAVPREHNGNEIVDVMCHATLTHRLMSPHRVPNYNLFVMDEAHFTDPASIAARGY 300 IRYQT A+ EH G EIVD+MCHAT T RL+SP RVPNYNL +MDEAHFTDPASIAARGY Sbjct 1715 IRYQTPAIRAEHTGREIVDLMCHATFTMRLLSPIRVPNYNLIIMDEAHFTDPASIAARGY 1774 Query 301 ISTKVELGEAAAIFMTATPPGTSDPFPESNSPISDLQTEIPDRAWNSGYEWITEYTGKTV 360 IST+VE+GEAA IFMTATPPG+ DPFP+SN+PI D + EIP+R+WNSG+EW+T++ GKTV Sbjct 1775 ISTRVEMGEAAGIFMTATPPGSRDPFPQSNAPIMDEEREIPERSWNSGHEWVTDFKGKTV 1834 Query 361 WFVPSVKMGNEIALCLQRAGKKVVQLNRKSYETEYPKCKNDDWDFVITTDISEMGANFKA 420 WFVPS+K GN+IA CL++ GK+V+QL+RK++++EY K + +DWDFV+TTDISEMGANFKA Sbjct 1835 WFVPSIKTGNDIAACLRKNGKRVIQLSRKTFDSEYVKTRTNDWDFVVTTDISEMGANFKA 1894 Query 421 SRVIDSRKSVKPTIITEGEGRVILGEPSAVTAASAAQRRGRIGRNPSQVGDEYCYGGHTN 480 RVID R+ +KP I+T+GE RVIL P VT +SAAQRRGRIGRNP D+Y Y G Sbjct 1895 ERVIDPRRCMKPVILTDGEERVILAGPMPVTHSSAAQRRGRIGRNPRNENDQYIYMGEPL 1954 Query 481 EDDSNFAHWTEARIMLDNINMPNGLIAQFYQPEREKVYTMDGEYRLRGEERKNFLELLRT 540 E+D + AHW EA+++LDNIN P G+I ++PEREKV +DGEYRLRGE RK F++L+R Sbjct 1955 ENDEDCAHWKEAKMLLDNINTPEGIIPSMFEPEREKVDAIDGEYRLRGEARKTFVDLMRR 2014 Query 541 ADLPVWLAYKVAAAGVSYHDRRWCFDGPRTNTILEDNNEVEVITKLGERKILRPRWIDAR 600 DLPVWLAYKVAA G++Y DRRWCFDG R N ILE+N EVE+ TK GERK L+PRW+DAR Sbjct 2015 GDLPVWLAYKVAAEGINYADRRWCFDGTRNNQILEENVEVEIWTKEGERKKLKPRWLDAR 2074 Query 601 VYSDHQALKAFKDFASGKR 619 +YSD AL K+FA+G++ Sbjct 2075 IYSDPLAL---KEFAAGRK 2090 >RecName: Full=Genome polyprotein; Contains: RecName: Full=Capsid protein C; AltName: Full=Core protein; Contains: RecName: Full=Protein prM; Contains: RecName: Full=Peptide pr; Contains: RecName: Full=Small envelope protein M; AltName: Full=Matrix protein; Contains: RecName: Full=Envelope protein E; Contains: RecName: Full=Non-structural protein 1; Short=NS1; Contains: RecName: Full=Non-structural protein 2A; Short=NS2A; Contains: RecName: Full=Serine protease subunit NS2B; AltName: Full=Flavivirin protease NS2B regulatory subunit; AltName: Full=Non-structural protein 2B; Contains: RecName: Full=Serine protease NS3; AltName: Full=Flavivirin protease NS3 catalytic subunit; AltName: Full=Non-structural protein 3; Contains: RecName: Full=Non-structural protein 4A; Short=NS4A; Contains: RecName: Full=Peptide 2k; Contains: RecName: Full=Non-structural protein 4B; Short=NS4B; Contains: RecName: Full=RNA-directed RNA polymerase NS5; AltName: Full=Non-structural protein 5 [Dengue virus 3 Philippines/H87/1956] Sequence ID: P27915.1 Length: 3390 Range 1: 1475 to 2092 Score:836 bits(2160), Expect:0.0, Method:Compositional matrix adjust., Identities:389/619(63%), Positives:479/619(77%), Gaps:2/619(0%) Query 2 GVLWDTPSPKEYKKGDTTTGVYRIMTRGLLGSYQAGAGVMVEGVFHTLWHTTKGAALMSG 61 GVLWD PSP E +K + GVYRI +G+ G Q G GV EGVFHT+WH T+GA L Sbjct 1475 GVLWDVPSPPETQKAELEEGVYRIKQQGIFGKTQVGVGVQKEGVFHTMWHVTRGAVLTHN 1534 Query 62 EGRLDPYWGSVKEDRLCYGGPWKLQHKWNGQDEVQMIVVEPGKNVKNVQTKPGVFKTPEG 121 RL+P W SVK+D + YGG W+L +W +EVQ+I VEPGKN KN QT PG+F+T G Sbjct 1535 GKRLEPNWASVKKDLISYGGGWRLSAQWQKGEEVQVIAVEPGKNPKNFQTMPGIFQTTTG 1594 Query 122 EIGAVTLDFPTGTSGSPIVDKNGDVIGLYGNGVIMPNGSYISAIVQ-GERMDEPIPAGFE 180 EIGA+ LDF GTSGSPI+++ G V+GLYGNGV+ NG Y+S I Q D P P E Sbjct 1595 EIGAIALDFKPGTSGSPIINREGKVVGLYGNGVVTKNGGYVSGIAQTNAEPDGPTPE-LE 1653 Query 181 PEMLRKKQITVLDLHPGAGKTRRILPQIIKEAINRRLRTAVLAPTRVVAAEMAEALRGLP 240 EM +K+ +T++DLHPG+GKTR+ LP I++EAI RRLRT +LAPTRVVAAEM EA++GLP Sbjct 1654 EEMFKKRNLTIMDLHPGSGKTRKYLPAIVREAIKRRLRTLILAPTRVVAAEMEEAMKGLP 1713 Query 241 IRYQTSAVPREHNGNEIVDVMCHATLTHRLMSPHRVPNYNLFVMDEAHFTDPASIAARGY 300 IRYQT+A EH G EIVD+MCHAT T RL+SP RVPNYNL +MDEAHFTDPASIAARGY Sbjct 1714 IRYQTTATKSEHTGREIVDLMCHATFTMRLLSPVRVPNYNLIIMDEAHFTDPASIAARGY 1773 Query 301 ISTKVELGEAAAIFMTATPPGTSDPFPESNSPISDLQTEIPDRAWNSGYEWITEYTGKTV 360 IST+V +GEAAAIFMTATPPGT+D FP+SN+PI D + +IP+R+WNSG EWIT++ GKTV Sbjct 1774 ISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGNEWITDFVGKTV 1833 Query 361 WFVPSVKMGNEIALCLQRAGKKVVQLNRKSYETEYPKCKNDDWDFVITTDISEMGANFKA 420 WFVPS+K GN IA CL++ GKKV+QL+RK+++TEY K K +DWDFV+TTDISEMGANF A Sbjct 1834 WFVPSIKAGNVIANCLRKNGKKVIQLSRKTFDTEYQKTKLNDWDFVVTTDISEMGANFIA 1893 Query 421 SRVIDSRKSVKPTIITEGEGRVILGEPSAVTAASAAQRRGRIGRNPSQVGDEYCYGGHTN 480 RVID R+ +KP I+T+G RVIL P VT ASAAQRRGR+GRNP + D+Y + G Sbjct 1894 DRVIDPRRCLKPVILTDGPERVILAGPMPVTVASAAQRRGRVGRNPQKENDQYIFMGQPL 1953 Query 481 EDDSNFAHWTEARIMLDNINMPNGLIAQFYQPEREKVYTMDGEYRLRGEERKNFLELLRT 540 D + AHWTEA+++LDNIN P G+I ++PEREK +DGEYRL+GE RK F+EL+R Sbjct 1954 NKDEDHAHWTEAKMLLDNINTPEGIIPALFEPEREKSAAIDGEYRLKGESRKTFVELMRR 2013 Query 541 ADLPVWLAYKVAAAGVSYHDRRWCFDGPRTNTILEDNNEVEVITKLGERKILRPRWIDAR 600 DLPVWLA+KVA+ G+ Y DR+WCFDG R N ILE+N +VE+ TK GE+K LRPRW+DAR Sbjct 2014 GDLPVWLAHKVASEGIKYTDRKWCFDGERNNQILEENMDVEIWTKEGEKKKLRPRWLDAR 2073 Query 601 VYSDHQALKAFKDFASGKR 619 YSD ALK FKDFA+G++ Sbjct 2074 TYSDPLALKEFKDFAAGRK 2092 >RecName: Full=Genome polyprotein; Contains: RecName: Full=Capsid protein C; AltName: Full=Core protein; Contains: RecName: Full=Protein prM; Contains: RecName: Full=Peptide pr; Contains: RecName: Full=Small envelope protein M; AltName: Full=Matrix protein; Contains: RecName: Full=Envelope protein E; Contains: RecName: Full=Non-structural protein 1; Short=NS1; Contains: RecName: Full=Non-structural protein 2A; Short=NS2A; Contains: RecName: Full=Serine protease subunit NS2B; AltName: Full=Flavivirin protease NS2B regulatory subunit; AltName: Full=Non-structural protein 2B; Contains: RecName: Full=Serine protease NS3; AltName: Full=Flavivirin protease NS3 catalytic subunit; AltName: Full=Non-structural protein 3; Contains: RecName: Full=Non-structural protein 4A; Short=NS4A; Contains: RecName: Full=Peptide 2k; Contains: RecName: Full=Non-structural protein 4B; Short=NS4B; Contains: RecName: Full=RNA-directed RNA polymerase NS5; AltName: Full=Non-structural protein 5 [Dengue virus 3 Sri Lanka/1266/2000] Sequence ID: Q6YMS4.1 Length: 3390 Range 1: 1475 to 2092 Score:823 bits(2127), Expect:0.0, Method:Compositional matrix adjust., Identities:392/619(63%), Positives:482/619(77%), Gaps:2/619(0%) Query 2 GVLWDTPSPKEYKKGDTTTGVYRIMTRGLLGSYQAGAGVMVEGVFHTLWHTTKGAALMSG 61 GVLWD PSP E +K + GVYRI +G+ G Q G GV EGVFHT+WH T+GA L Sbjct 1475 GVLWDVPSPPETQKAELEEGVYRIKQQGIFGKTQVGVGVQKEGVFHTMWHVTRGAVLTHN 1534 Query 62 EGRLDPYWGSVKEDRLCYGGPWKLQHKWNGQDEVQMIVVEPGKNVKNVQTKPGVFKTPEG 121 RL+P W SVK+D + YGG W+L +W +EVQ+I VEPGKN KN QT PG F+T G Sbjct 1535 GKRLEPNWASVKKDLISYGGGWRLSAQWQKGEEVQVIAVEPGKNPKNFQTTPGTFQTTTG 1594 Query 122 EIGAVTLDFPTGTSGSPIVDKNGDVIGLYGNGVIMPNGSYISAIVQ-GERMDEPIPAGFE 180 EIGA+ LDF GTSGSPI+++ G V+GLYGNGV+ NG Y+S I Q D P P E Sbjct 1595 EIGAIALDFKPGTSGSPIINREGKVVGLYGNGVVTKNGGYVSGIAQTNAEPDGPTPE-LE 1653 Query 181 PEMLRKKQITVLDLHPGAGKTRRILPQIIKEAINRRLRTAVLAPTRVVAAEMAEALRGLP 240 EM +K+ +T++DLHPG+GKTR+ LP I++EAI RRLRT +LAPTRVVAAEM EAL+GLP Sbjct 1654 EEMFKKRNLTIMDLHPGSGKTRKYLPAIVREAIKRRLRTLILAPTRVVAAEMEEALKGLP 1713 Query 241 IRYQTSAVPREHNGNEIVDVMCHATLTHRLMSPHRVPNYNLFVMDEAHFTDPASIAARGY 300 IRYQT+A EH G EIVD+MCHAT T RL+SP RVPNYNL +MDEAHFTDPASIAARGY Sbjct 1714 IRYQTTATKSEHTGREIVDLMCHATFTMRLLSPVRVPNYNLIIMDEAHFTDPASIAARGY 1773 Query 301 ISTKVELGEAAAIFMTATPPGTSDPFPESNSPISDLQTEIPDRAWNSGYEWITEYTGKTV 360 IST+V +GEAAAIFMTATPPGT+D FP+SN+PI D + +IP+R+WNSG EWIT++ GKTV Sbjct 1774 ISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGNEWITDFAGKTV 1833 Query 361 WFVPSVKMGNEIALCLQRAGKKVVQLNRKSYETEYPKCKNDDWDFVITTDISEMGANFKA 420 WFVPS+K GN+IA CL++ GKKV+QL+RK+++TEY K K +DWDFV+TTDISEMGANFKA Sbjct 1834 WFVPSIKAGNDIANCLRKNGKKVIQLSRKTFDTEYQKTKLNDWDFVVTTDISEMGANFKA 1893 Query 421 SRVIDSRKSVKPTIITEGEGRVILGEPSAVTAASAAQRRGRIGRNPSQVGDEYCYGGHTN 480 RVID R+ +KP I+T+G RVIL P VTAASAAQRRGR+GRNP + D+Y + G Sbjct 1894 DRVIDPRRCLKPVILTDGPERVILAGPMPVTAASAAQRRGRVGRNPQKENDQYIFTGQPL 1953 Query 481 EDDSNFAHWTEARIMLDNINMPNGLIAQFYQPEREKVYTMDGEYRLRGEERKNFLELLRT 540 +D + AHWTEA+++LDNIN P G+I ++PEREK +DGEYRL+GE RK F+EL+R Sbjct 1954 NNDEDHAHWTEAKMLLDNINTPEGIIPALFEPEREKSAAIDGEYRLKGESRKTFVELMRR 2013 Query 541 ADLPVWLAYKVAAAGVSYHDRRWCFDGPRTNTILEDNNEVEVITKLGERKILRPRWIDAR 600 DLPVWLA+KVA+ G+ Y DR+WCFDG R N ILE+N +VE+ TK GE+K LRPRW+DAR Sbjct 2014 GDLPVWLAHKVASEGIKYTDRKWCFDGQRNNQILEENMDVEIWTKEGEKKKLRPRWLDAR 2073 Query 601 VYSDHQALKAFKDFASGKR 619 YSD ALK FKDFA+G++ Sbjct 2074 TYSDPLALKEFKDFAAGRK 2092 >RecName: Full=Genome polyprotein; Contains: RecName: Full=Capsid protein C; AltName: Full=Core protein; Contains: RecName: Full=Protein prM; Contains: RecName: Full=Peptide pr; Contains: RecName: Full=Small envelope protein M; AltName: Full=Matrix protein; Contains: RecName: Full=Envelope protein E; Contains: RecName: Full=Non-structural protein 1; Short=NS1; Contains: RecName: Full=Non-structural protein 2A; Short=NS2A; Contains: RecName: Full=Non-structural protein 2A-alpha; Short=NS2A-alpha; Contains: RecName: Full=Serine protease subunit NS2B; AltName: Full=Flavivirin protease NS2B regulatory subunit; AltName: Full=Non-structural protein 2B; Contains: RecName: Full=Serine protease NS3; AltName: Full=Flavivirin protease NS3 catalytic subunit; AltName: Full=Non-structural protein 3; Contains: RecName: Full=Non-structural protein 4A; Short=NS4A; Contains: RecName: Full=Peptide 2k; Contains: RecName: Full=Non-structural protein 4B; Short=NS4B; Contains: RecName: Full=RNA-directed RNA polymerase NS5; AltName: Full=Non-structural protein 5 [Yellow fever virus strain French neurotropic vaccine] Sequence ID: Q89277.2 Length: 3411 Range 1: 1486 to 2107 Score:656 bits(1692), Expect:0.0, Method:Compositional matrix adjust., Identities:323/623(52%), Positives:425/623(68%), Gaps:5/623(0%) Query 1 GGVLWDTPSPKEYKKGD-TTTGVYRIMTRGLLGSYQAGAGVMVEGVFHTLWHTTKGAALM 59 G VLWD P+PK ++ + G+Y I LG+ Q G GV GVFHT+WH T+GA L+ Sbjct 1486 GDVLWDIPTPKVIEECEHLEDGIYGIFQSTFLGASQRGVGVAQGGVFHTMWHVTRGAFLV 1545 Query 60 SGEGRLDPYWGSVKEDRLCYGGPWKLQHKWNGQDEVQMIVVEPGKNVKNVQTKPGVFKTP 119 +L P W SVKED + YGG WKL+ +W+G++EVQ+I PGKNV NVQTKP +FK Sbjct 1546 RNGKKLIPSWASVKEDLVAYGGSWKLEGRWDGEEEVQLIAAVPGKNVVNVQTKPSLFKVR 1605 Query 120 EG-EIGAVTLDFPTGTSGSPIVDKNGDVIGLYGNGVIMPNGSYISAIVQGERMDEPIPAG 178 G EIGAV LD+P+GTSGSPIV++NG+VIGLYGNG+++ + S++SAI Q E +E Sbjct 1606 NGGEIGAVALDYPSGTSGSPIVNRNGEVIGLYGNGILVGDNSFVSAISQTEVKEEGKEEL 1665 Query 179 FE-PEMLRKKQITVLDLHPGAGKTRRILPQIIKEAINRRLRTAVLAPTRVVAAEMAEALR 237 E P ML+K + T+LD HPGAGKTRR LPQI+ E RRLRT VLAPTRVV +EM EA Sbjct 1666 QEIPTMLKKGKTTILDFHPGAGKTRRFLPQILAECARRRLRTLVLAPTRVVLSEMKEAFH 1725 Query 238 GLPIRYQTSAVPREHNGNEIVDVMCHATLTHRLMSPHRVPNYNLFVMDEAHFTDPASIAA 297 GL +++ T A +G E++D MCHATLT+R++ P R+ N+ + +MDEAHF DPASIAA Sbjct 1726 GLDVKFHTQAFSAHGSGREVIDAMCHATLTYRMLEPTRIVNWEVIIMDEAHFLDPASIAA 1785 Query 298 RGYISTKVELGEAAAIFMTATPPGTSDPFPESNSPISDLQTEIPDRAWNSGYEWITEYTG 357 RG+ + + E+A I MTATPPGTSD FP SN I D+QT+IP WN+G++WI Sbjct 1786 RGWAAHRARANESATILMTATPPGTSDEFPHSNGEIEDVQTDIPSEPWNTGHDWILADKR 1845 Query 358 KTVWFVPSVKMGNEIALCLQRAGKKVVQLNRKSYETEYPKCKNDDWDFVITTDISEMGAN 417 T WF+PS++ N +A L++AGK VV LNRK++E EYP K DF++ TDI+EMGAN Sbjct 1846 PTAWFLPSIRAANVMAASLRKAGKSVVVLNRKTFEREYPTIKQKKPDFILATDIAEMGAN 1905 Query 418 FKASRVIDSRKSVKPTIITEGEGRVILGEPSAVTAASAAQRRGRIGRNPSQVGDEYCYGG 477 RV+D R + KP ++ EG I G P ++A+SAAQRRGRIGRNP++ GD Y Y Sbjct 1906 LCVERVLDCRTAFKPVLVDEGRKVAIKG-PLRISASSAAQRRGRIGRNPNRDGDSYYYSE 1964 Query 478 HTNEDDSNFAHWTEARIMLDNINMPNGLIAQFYQPEREKVYTMDGEYRLRGEERKNFLEL 537 T+ED+++ W EA ++LDN+ + G++A Y E K GE RLR ++RK F EL Sbjct 1965 PTSEDNAHHVCWLEASMLLDNMEVRGGMVAPLYGVEGTKTPVSPGEMRLRDDQRKVFREL 2024 Query 538 LRTADLPVWLAYKVAAAGVSYHDRRWCFDGPRTNTILEDNNE-VEVITKLGERKILRPRW 596 +R DLPVWL+++VA AG+ +DR+WCF+GP + IL D+ E V+ T G +K LRPRW Sbjct 2025 VRNCDLPVWLSWQVAKAGLKTNDRKWCFEGPEEHEILNDSGETVKCRTPGGAKKPLRPRW 2084 Query 597 IDARVYSDHQALKAFKDFASGKR 619 D RV SD AL F FA G+R Sbjct 2085 CDERVSSDQSALSEFIKFAEGRR 2107 >RecName: Full=Genome polyprotein; Contains: RecName: Full=Capsid protein C; AltName: Full=Core protein; Contains: RecName: Full=Protein prM; Contains: RecName: Full=Peptide pr; Contains: RecName: Full=Small envelope protein M; AltName: Full=Matrix protein; Contains: RecName: Full=Envelope protein E; Contains: RecName: Full=Non-structural protein 1; Short=NS1; Contains: RecName: Full=Non-structural protein 2A; Short=NS2A; Contains: RecName: Full=Non-structural protein 2A-alpha; Short=NS2A-alpha; Contains: RecName: Full=Serine protease subunit NS2B; AltName: Full=Flavivirin protease NS2B regulatory subunit; AltName: Full=Non-structural protein 2B; Contains: RecName: Full=Serine protease NS3; AltName: Full=Flavivirin protease NS3 catalytic subunit; AltName: Full=Non-structural protein 3; Contains: RecName: Full=Non-structural protein 4A; Short=NS4A; Contains: RecName: Full=Peptide 2k; Contains: RecName: Full=Non-structural protein 4B; Short=NS4B; Contains: RecName: Full=RNA-directed RNA polymerase NS5; AltName: Full=Non-structural protein 5 [Yellow fever virus Trinidad/79A/1979] Sequence ID: Q9YRV3.1 Length: 3411 Range 1: 1486 to 2107 Score:654 bits(1688), Expect:0.0, Method:Compositional matrix adjust., Identities:323/623(52%), Positives:425/623(68%), Gaps:5/623(0%) Query 1 GGVLWDTPSPKEYKKGD-TTTGVYRIMTRGLLGSYQAGAGVMVEGVFHTLWHTTKGAALM 59 G VLWD P+PK ++ + G+Y I LG+ Q G GV GVFHT+WH T+GA L+ Sbjct 1486 GDVLWDIPTPKIIEECEHLEDGIYGIFQSTFLGASQRGVGVAQGGVFHTMWHVTRGAFLV 1545 Query 60 SGEGRLDPYWGSVKEDRLCYGGPWKLQHKWNGQDEVQMIVVEPGKNVKNVQTKPGVFKTP 119 +L P W SVKED + YGG WKL+ +W+G++EVQ+I PGKNV NVQTKP +FK Sbjct 1546 WNGKKLIPSWASVKEDLVAYGGSWKLEGRWDGEEEVQLIAAAPGKNVVNVQTKPSLFKVR 1605 Query 120 EG-EIGAVTLDFPTGTSGSPIVDKNGDVIGLYGNGVIMPNGSYISAIVQGERMDEPIPAG 178 G EIGAV LD+P+GTSGSPIV++NG+VIGLYGNG+++ + S++SAI Q E +E Sbjct 1606 NGGEIGAVALDYPSGTSGSPIVNRNGEVIGLYGNGILVGDNSFVSAISQTEVKEEGKEEL 1665 Query 179 FE-PEMLRKKQITVLDLHPGAGKTRRILPQIIKEAINRRLRTAVLAPTRVVAAEMAEALR 237 E P ML+K + T+LD HPGAGKTRR LPQI+ E RRLRT VLAPTRVV +EM EA Sbjct 1666 QEIPTMLKKGKTTILDFHPGAGKTRRFLPQILAECARRRLRTLVLAPTRVVLSEMKEAFH 1725 Query 238 GLPIRYQTSAVPREHNGNEIVDVMCHATLTHRLMSPHRVPNYNLFVMDEAHFTDPASIAA 297 GL +++ T A +G E++DVMCHATLT+R++ P R+ N+ + +MDEAHF DPASIAA Sbjct 1726 GLDVKFHTQAFSAHGSGREVIDVMCHATLTYRMLEPTRIVNWEVIIMDEAHFLDPASIAA 1785 Query 298 RGYISTKVELGEAAAIFMTATPPGTSDPFPESNSPISDLQTEIPDRAWNSGYEWITEYTG 357 RG+ + + E+A I MTATPPGTSD FP SN I D+QT+IP WN+G++WI Sbjct 1786 RGWAAHRARANESATILMTATPPGTSDEFPHSNGEIEDVQTDIPSEPWNTGHDWILADKR 1845 Query 358 KTVWFVPSVKMGNEIALCLQRAGKKVVQLNRKSYETEYPKCKNDDWDFVITTDISEMGAN 417 T WF+PS++ N +A L++AGK VV LNRK++E EYP K DF++ TDI+EMGAN Sbjct 1846 PTAWFLPSIRAANVMAASLRKAGKSVVVLNRKTFEREYPTIKQKKPDFILATDIAEMGAN 1905 Query 418 FKASRVIDSRKSVKPTIITEGEGRVILGEPSAVTAASAAQRRGRIGRNPSQVGDEYCYGG 477 RV+D R + KP ++ EG I G P ++A+SAAQRRGRIGRNP++ GD Y Y Sbjct 1906 LCVERVLDCRTAFKPVLVDEGRKVAIKG-PLRISASSAAQRRGRIGRNPNRDGDSYYYSE 1964 Query 478 HTNEDDSNFAHWTEARIMLDNINMPNGLIAQFYQPEREKVYTMDGEYRLRGEERKNFLEL 537 T+ED+++ W EA ++LDN+ + G++A Y E K GE RLR ++RK F EL Sbjct 1965 PTSEDNAHHVCWLEASMLLDNMEVRGGMVAPLYGVEGIKTPVSPGEMRLRDDQRKVFREL 2024 Query 538 LRTADLPVWLAYKVAAAGVSYHDRRWCFDGPRTNTILEDNNE-VEVITKLGERKILRPRW 596 +R DLPVWL+++VA AG+ +DR+WCF+GP + IL D+ E V+ G +K LRPRW Sbjct 2025 VRNCDLPVWLSWQVAKAGLKTNDRKWCFEGPEEHEILNDSGETVKCRAPGGAKKPLRPRW 2084 Query 597 IDARVYSDHQALKAFKDFASGKR 619 D RV SD AL F FA G+R Sbjct 2085 CDERVSSDQSALSEFIKFAEGRR 2107 >RecName: Full=Genome polyprotein; Contains: RecName: Full=Capsid protein C; AltName: Full=Core protein; Contains: RecName: Full=Protein prM; Contains: RecName: Full=Peptide pr; Contains: RecName: Full=Small envelope protein M; AltName: Full=Matrix protein; Contains: RecName: Full=Envelope protein E; Contains: RecName: Full=Non-structural protein 1; Short=NS1; Contains: RecName: Full=Non-structural protein 2A; Short=NS2A; Contains: RecName: Full=Non-structural protein 2A-alpha; Short=NS2A-alpha; Contains: RecName: Full=Serine protease subunit NS2B; AltName: Full=Flavivirin protease NS2B regulatory subunit; AltName: Full=Non-structural protein 2B; Contains: RecName: Full=Serine protease NS3; AltName: Full=Flavivirin protease NS3 catalytic subunit; AltName: Full=Non-structural protein 3; Contains: RecName: Full=Non-structural protein 4A; Short=NS4A; Contains: RecName: Full=Peptide 2k; Contains: RecName: Full=Non-structural protein 4B; Short=NS4B; Contains: RecName: Full=RNA-directed RNA polymerase NS5; AltName: Full=Non-structural protein 5 [Yellow fever virus strain Ghana/Asibi/1927] Sequence ID: Q6DV88.1 Length: 3411 Range 1: 1486 to 2107 Score:654 bits(1687), Expect:0.0, Method:Compositional matrix adjust., Identities:323/623(52%), Positives:423/623(67%), Gaps:5/623(0%) Query 1 GGVLWDTPSPKEYKKGD-TTTGVYRIMTRGLLGSYQAGAGVMVEGVFHTLWHTTKGAALM 59 G VLWD P+PK ++ + G+Y I LG+ Q G GV GVFHT+WH T+GA L+ Sbjct 1486 GDVLWDIPTPKIIEECEHLEDGIYGIFQSTFLGASQRGVGVAQGGVFHTMWHVTRGAFLV 1545 Query 60 SGEGRLDPYWGSVKEDRLCYGGPWKLQHKWNGQDEVQMIVVEPGKNVKNVQTKPGVFKTP 119 +L P W SVKED + YGG WKL+ +W+G++EVQ+I PGKNV NVQTKP +FK Sbjct 1546 RNGKKLIPSWASVKEDLVAYGGSWKLEGRWDGEEEVQLIAAVPGKNVVNVQTKPSLFKVR 1605 Query 120 EG-EIGAVTLDFPTGTSGSPIVDKNGDVIGLYGNGVIMPNGSYISAIVQGERMDEPIPAG 178 G EIGAV LD+P+GTSGSPIV++NG+VIGLYGNG+++ + S++SAI Q E +E Sbjct 1606 NGGEIGAVALDYPSGTSGSPIVNRNGEVIGLYGNGILVGDNSFVSAISQTEVKEEGKEEL 1665 Query 179 FE-PEMLRKKQITVLDLHPGAGKTRRILPQIIKEAINRRLRTAVLAPTRVVAAEMAEALR 237 E P ML+K T+LD HPGAGKTRR LPQI+ E RRLRT VLAPTRVV +EM EA Sbjct 1666 QEIPTMLKKGMTTILDFHPGAGKTRRFLPQILAECARRRLRTLVLAPTRVVLSEMKEAFH 1725 Query 238 GLPIRYQTSAVPREHNGNEIVDVMCHATLTHRLMSPHRVPNYNLFVMDEAHFTDPASIAA 297 GL +++ T A +G E++D MCHATLT+R++ P RV N+ + +MDEAHF DPASIAA Sbjct 1726 GLDVKFHTQAFSAHGSGREVIDAMCHATLTYRMLEPTRVVNWEVIIMDEAHFLDPASIAA 1785 Query 298 RGYISTKVELGEAAAIFMTATPPGTSDPFPESNSPISDLQTEIPDRAWNSGYEWITEYTG 357 RG+ + + E+A I MTATPPGTSD FP SN I D+QT+IP WN+G++WI Sbjct 1786 RGWAAHRARANESATILMTATPPGTSDEFPHSNGEIEDVQTDIPSEPWNTGHDWILADKR 1845 Query 358 KTVWFVPSVKMGNEIALCLQRAGKKVVQLNRKSYETEYPKCKNDDWDFVITTDISEMGAN 417 T WF+PS++ N +A L++AGK VV LNRK++E EYP K DF++ TDI+EMGAN Sbjct 1846 PTAWFLPSIRAANVMAASLRKAGKSVVVLNRKTFEREYPTIKQKKPDFILATDIAEMGAN 1905 Query 418 FKASRVIDSRKSVKPTIITEGEGRVILGEPSAVTAASAAQRRGRIGRNPSQVGDEYCYGG 477 RV+D R + KP ++ EG I G P ++A+SAAQRRGRIGRNP++ GD Y Y Sbjct 1906 LCVERVLDCRTAFKPVLVDEGRKVAIKG-PLRISASSAAQRRGRIGRNPNRDGDSYYYSE 1964 Query 478 HTNEDDSNFAHWTEARIMLDNINMPNGLIAQFYQPEREKVYTMDGEYRLRGEERKNFLEL 537 T+ED+++ W EA ++LDN+ + G++A Y E K GE RLR ++RK F EL Sbjct 1965 PTSEDNAHHVCWLEASMLLDNMEVRGGMVAPLYGVEGTKTPVSPGEMRLRDDQRKVFREL 2024 Query 538 LRTADLPVWLAYKVAAAGVSYHDRRWCFDGPRTNTILEDNNE-VEVITKLGERKILRPRW 596 +R DLPVWL+++VA AG+ +DR+WCF+GP + IL D+ E V+ G +K LRPRW Sbjct 2025 VRNCDLPVWLSWQVAKAGLKTNDRKWCFEGPEEHEILNDSGETVKCRAPGGAKKPLRPRW 2084 Query 597 IDARVYSDHQALKAFKDFASGKR 619 D RV SD AL F FA G+R Sbjct 2085 CDERVSSDQSALSEFIKFAEGRR 2107 >RecName: Full=Genome polyprotein; Contains: RecName: Full=Capsid protein C; AltName: Full=Core protein; Contains: RecName: Full=Protein prM; Contains: RecName: Full=Peptide pr; Contains: RecName: Full=Small envelope protein M; AltName: Full=Matrix protein; Contains: RecName: Full=Envelope protein E; Contains: RecName: Full=Non-structural protein 1; Short=NS1; Contains: RecName: Full=Non-structural protein 2A; Short=NS2A; Contains: RecName: Full=Non-structural protein 2A-alpha; Short=NS2A-alpha; Contains: RecName: Full=Serine protease subunit NS2B; AltName: Full=Flavivirin protease NS2B regulatory subunit; AltName: Full=Non-structural protein 2B; Contains: RecName: Full=Serine protease NS3; AltName: Full=Flavivirin protease NS3 catalytic subunit; AltName: Full=Non-structural protein 3; Contains: RecName: Full=Non-structural protein 4A; Short=NS4A; Contains: RecName: Full=Peptide 2k; Contains: RecName: Full=Non-structural protein 4B; Short=NS4B; Contains: RecName: Full=RNA-directed RNA polymerase NS5; AltName: Full=Non-structural protein 5 [Yellow fever virus 17D] Sequence ID: P03314.1 Length: 3411 Range 1: 1486 to 2107 Score:652 bits(1683), Expect:0.0, Method:Compositional matrix adjust., Identities:323/623(52%), Positives:423/623(67%), Gaps:5/623(0%) Query 1 GGVLWDTPSPKEYKKGD-TTTGVYRIMTRGLLGSYQAGAGVMVEGVFHTLWHTTKGAALM 59 G VLWD P+PK ++ + G+Y I LG+ Q G GV GVFHT+WH T+GA L+ Sbjct 1486 GDVLWDIPTPKIIEECEHLEDGIYGIFQSTFLGASQRGVGVAQGGVFHTMWHVTRGAFLV 1545 Query 60 SGEGRLDPYWGSVKEDRLCYGGPWKLQHKWNGQDEVQMIVVEPGKNVKNVQTKPGVFKTP 119 +L P W SVKED + YGG WKL+ +W+G++EVQ+I PGKNV NVQTKP +FK Sbjct 1546 RNGKKLIPSWASVKEDLVAYGGSWKLEGRWDGEEEVQLIAAVPGKNVVNVQTKPSLFKVR 1605 Query 120 EG-EIGAVTLDFPTGTSGSPIVDKNGDVIGLYGNGVIMPNGSYISAIVQGERMDEPIPAG 178 G EIGAV LD+P+GTSGSPIV++NG+VIGLYGNG+++ + S++SAI Q E +E Sbjct 1606 NGGEIGAVALDYPSGTSGSPIVNRNGEVIGLYGNGILVGDNSFVSAISQTEVKEEGKEEL 1665 Query 179 FE-PEMLRKKQITVLDLHPGAGKTRRILPQIIKEAINRRLRTAVLAPTRVVAAEMAEALR 237 E P ML+K TVLD HPGAGKTRR LPQI+ E RRLRT VLAPTRVV +EM EA Sbjct 1666 QEIPTMLKKGMTTVLDFHPGAGKTRRFLPQILAECARRRLRTLVLAPTRVVLSEMKEAFH 1725 Query 238 GLPIRYQTSAVPREHNGNEIVDVMCHATLTHRLMSPHRVPNYNLFVMDEAHFTDPASIAA 297 GL +++ T A +G E++D MCHATLT+R++ P RV N+ + +MDEAHF DPASIAA Sbjct 1726 GLDVKFHTQAFSAHGSGREVIDAMCHATLTYRMLEPTRVVNWEVIIMDEAHFLDPASIAA 1785 Query 298 RGYISTKVELGEAAAIFMTATPPGTSDPFPESNSPISDLQTEIPDRAWNSGYEWITEYTG 357 RG+ + + E+A I MTATPPGTSD FP SN I D+QT+IP WN+G++WI Sbjct 1786 RGWAAHRARANESATILMTATPPGTSDEFPHSNGEIEDVQTDIPSEPWNTGHDWILADKR 1845 Query 358 KTVWFVPSVKMGNEIALCLQRAGKKVVQLNRKSYETEYPKCKNDDWDFVITTDISEMGAN 417 T WF+PS++ N +A L++AGK VV LNRK++E EYP K DF++ TDI+EMGAN Sbjct 1846 PTAWFLPSIRAANVMAASLRKAGKSVVVLNRKTFEREYPTIKQKKPDFILATDIAEMGAN 1905 Query 418 FKASRVIDSRKSVKPTIITEGEGRVILGEPSAVTAASAAQRRGRIGRNPSQVGDEYCYGG 477 RV+D R + KP ++ EG I G P ++A+SAAQRRGRIGRNP++ GD Y Y Sbjct 1906 LCVERVLDCRTAFKPVLVDEGRKVAIKG-PLRISASSAAQRRGRIGRNPNRDGDSYYYSE 1964 Query 478 HTNEDDSNFAHWTEARIMLDNINMPNGLIAQFYQPEREKVYTMDGEYRLRGEERKNFLEL 537 T+E++++ W EA ++LDN+ + G++A Y E K GE RLR ++RK F EL Sbjct 1965 PTSENNAHHVCWLEASMLLDNMEVRGGMVAPLYGVEGTKTPVSPGEMRLRDDQRKVFREL 2024 Query 538 LRTADLPVWLAYKVAAAGVSYHDRRWCFDGPRTNTILEDNNE-VEVITKLGERKILRPRW 596 +R DLPVWL+++VA AG+ +DR+WCF+GP + IL D+ E V+ G +K LRPRW Sbjct 2025 VRNCDLPVWLSWQVAKAGLKTNDRKWCFEGPEEHEILNDSGETVKCRAPGGAKKPLRPRW 2084 Query 597 IDARVYSDHQALKAFKDFASGKR 619 D RV SD AL F FA G+R Sbjct 2085 CDERVSSDQSALSEFIKFAEGRR 2107 >RecName: Full=Genome polyprotein; Contains: RecName: Full=Capsid protein C; AltName: Full=Core protein; Contains: RecName: Full=Protein prM; Contains: RecName: Full=Peptide pr; Contains: RecName: Full=Small envelope protein M; AltName: Full=Matrix protein; Contains: RecName: Full=Envelope protein E; Contains: RecName: Full=Non-structural protein 1; Short=NS1; Contains: RecName: Full=Non-structural protein 2A; Short=NS2A; Contains: RecName: Full=Non-structural protein 2A-alpha; Short=NS2A-alpha; Contains: RecName: Full=Serine protease subunit NS2B; AltName: Full=Flavivirin protease NS2B regulatory subunit; AltName: Full=Non-structural protein 2B; Contains: RecName: Full=Serine protease NS3; AltName: Full=Flavivirin protease NS3 catalytic subunit; AltName: Full=Non-structural protein 3; Contains: RecName: Full=Non-structural protein 4A; Short=NS4A; Contains: RecName: Full=Peptide 2k; Contains: RecName: Full=Non-structural protein 4B; Short=NS4B; Contains: RecName: Full=RNA-directed RNA polymerase NS5; AltName: Full=Non-structural protein 5 [Yellow fever virus isolate Uganda/A7094A4/1948] Sequence ID: Q1X880.1 Length: 3412 Range 1: 1486 to 2107 Score:651 bits(1679), Expect:0.0, Method:Compositional matrix adjust., Identities:322/623(52%), Positives:421/623(67%), Gaps:5/623(0%) Query 1 GGVLWDTPSPKEYKKGD-TTTGVYRIMTRGLLGSYQAGAGVMVEGVFHTLWHTTKGAALM 59 G VLWD P+PK ++ + G+Y I LG+ Q G GV GVFHT+WH T+GA L+ Sbjct 1486 GDVLWDIPTPKVIEECEHLEDGIYGIFQSTFLGASQRGVGVAQGGVFHTMWHVTRGAFLL 1545 Query 60 SGEGRLDPYWGSVKEDRLCYGGPWKLQHKWNGQDEVQMIVVEPGKNVKNVQTKPGVFKTP 119 +L P W SVKED + YGG WKL KW+G++EVQ+I PGK V NVQTKP +FK Sbjct 1546 RNGKKLVPSWASVKEDLVAYGGSWKLDGKWDGEEEVQLIAAVPGKAVVNVQTKPSLFKVR 1605 Query 120 EG-EIGAVTLDFPTGTSGSPIVDKNGDVIGLYGNGVIMPNGSYISAIVQGERMDEPIPAG 178 G EIGAV LD+P+GTSGSPIV+++G+V+GLYGNG+++ + S++SAI Q E +E Sbjct 1606 NGGEIGAVALDYPSGTSGSPIVNRSGEVVGLYGNGILVGDNSFVSAISQTEVKEESKEEL 1665 Query 179 FE-PEMLRKKQITVLDLHPGAGKTRRILPQIIKEAINRRLRTAVLAPTRVVAAEMAEALR 237 E P ML+K T+LD HPGAGKTRR LPQI+ E RRLRT VLAPTRVV +EM EA Sbjct 1666 QEIPTMLKKGMTTILDFHPGAGKTRRFLPQILAECARRRLRTLVLAPTRVVLSEMKEAFH 1725 Query 238 GLPIRYQTSAVPREHNGNEIVDVMCHATLTHRLMSPHRVPNYNLFVMDEAHFTDPASIAA 297 GL +++ T A +G E++D MCHATLT+R++ P RV N+ + +MDEAHF DPASIAA Sbjct 1726 GLDVKFHTQAFSAHGSGKEVIDAMCHATLTYRMLEPTRVVNWEVIIMDEAHFLDPASIAA 1785 Query 298 RGYISTKVELGEAAAIFMTATPPGTSDPFPESNSPISDLQTEIPDRAWNSGYEWITEYTG 357 RG+ + + E+A I MTATPPGTSD FP SN I D+QT+IP W SG+EWI Sbjct 1786 RGWAAHRARANESATILMTATPPGTSDEFPHSNGEIEDVQTDIPSEPWTSGHEWILADKR 1845 Query 358 KTVWFVPSVKMGNEIALCLQRAGKKVVQLNRKSYETEYPKCKNDDWDFVITTDISEMGAN 417 T WF+PS++ N +A L++AGK VV LNRK++E EYP K DF++ TDI+EMGAN Sbjct 1846 PTAWFLPSIRAANVMAASLRKAGKNVVVLNRKTFEKEYPTIKQKRPDFILATDIAEMGAN 1905 Query 418 FKASRVIDSRKSVKPTIITEGEGRVILGEPSAVTAASAAQRRGRIGRNPSQVGDEYCYGG 477 RV+D R + KP ++ EG I G P ++A+SAAQRRGRIGRNP++ GD Y Y Sbjct 1906 LCVERVLDCRTAYKPVLVDEGRKVAIKG-PLRISASSAAQRRGRIGRNPNRDGDSYYYSE 1964 Query 478 HTNEDDSNFAHWTEARIMLDNINMPNGLIAQFYQPEREKVYTMDGEYRLRGEERKNFLEL 537 T+ED+++ W EA ++LDN+ + G++A Y E K GE RLR ++R+ F EL Sbjct 1965 PTSEDNAHHVCWLEASMLLDNMEVRGGMVAPLYGIEGTKTPVSPGEMRLRDDQRRVFREL 2024 Query 538 LRTADLPVWLAYKVAAAGVSYHDRRWCFDGPRTNTILEDNNE-VEVITKLGERKILRPRW 596 +R DLPVWL+++VA AG+ +DR+WCF+GP + IL DN E V+ + G +K LRPRW Sbjct 2025 VRGCDLPVWLSWQVAKAGLKTNDRKWCFEGPEEHEILNDNGETVKCRSPGGAKKALRPRW 2084 Query 597 IDARVYSDHQALKAFKDFASGKR 619 D RV SD AL F FA G+R Sbjct 2085 CDERVSSDQSALADFIKFAEGRR 2107 >RecName: Full=Genome polyprotein; Contains: RecName: Full=Capsid protein C; AltName: Full=Core protein; Contains: RecName: Full=Protein prM; Contains: RecName: Full=Peptide pr; Contains: RecName: Full=Small envelope protein M; AltName: Full=Matrix protein; Contains: RecName: Full=Envelope protein E; Contains: RecName: Full=Non-structural protein 1; Short=NS1; Contains: RecName: Full=Non-structural protein 2A; Short=NS2A; Contains: RecName: Full=Non-structural protein 2A-alpha; Short=NS2A-alpha; Contains: RecName: Full=Serine protease subunit NS2B; AltName: Full=Flavivirin protease NS2B regulatory subunit; AltName: Full=Non-structural protein 2B; Contains: RecName: Full=Serine protease NS3; AltName: Full=Flavivirin protease NS3 catalytic subunit; AltName: Full=Non-structural protein 3; Contains: RecName: Full=Non-structural protein 4A; Short=NS4A; Contains: RecName: Full=Peptide 2k; Contains: RecName: Full=Non-structural protein 4B; Short=NS4B; Contains: RecName: Full=RNA-directed RNA polymerase NS5; AltName: Full=Non-structural protein 5 [Yellow fever virus isolate Ivory Coast/1999] Sequence ID: Q6J3P1.1 Length: 3411 Range 1: 1486 to 2107 Score:650 bits(1676), Expect:0.0, Method:Compositional matrix adjust., Identities:321/623(52%), Positives:422/623(67%), Gaps:5/623(0%) Query 1 GGVLWDTPSPKEYKKGD-TTTGVYRIMTRGLLGSYQAGAGVMVEGVFHTLWHTTKGAALM 59 G VLWD P+PK ++ + G+Y I LG+ Q G GV GVFHT+WH T+GA L+ Sbjct 1486 GDVLWDIPTPKIIEECEHLEDGIYGIFQSTFLGASQRGVGVAQGGVFHTMWHVTRGAFLV 1545 Query 60 SGEGRLDPYWGSVKEDRLCYGGPWKLQHKWNGQDEVQMIVVEPGKNVKNVQTKPGVFKTP 119 +L P W SVKED + YGG WKL+ +W+G++EVQ+I PGKNV NVQTKP +FK Sbjct 1546 RNGKKLIPSWASVKEDLVAYGGSWKLEGRWDGEEEVQLIAAVPGKNVVNVQTKPSLFKVR 1605 Query 120 EG-EIGAVTLDFPTGTSGSPIVDKNGDVIGLYGNGVIMPNGSYISAIVQGERMDEPIPAG 178 G EIGAV LD+P+GTSGSPIV++NG+VIGLYGNG+++ + S++SAI Q E +E Sbjct 1606 NGGEIGAVALDYPSGTSGSPIVNRNGEVIGLYGNGILVGDNSFVSAISQTEVKEEGKEEL 1665 Query 179 FE-PEMLRKKQITVLDLHPGAGKTRRILPQIIKEAINRRLRTAVLAPTRVVAAEMAEALR 237 E P ML+K T+LD HPGAGKTRR LPQI+ E RRLRT VLAPTRVV +EM EA Sbjct 1666 QEIPTMLKKGMTTILDFHPGAGKTRRFLPQILAECARRRLRTLVLAPTRVVLSEMKEAFH 1725 Query 238 GLPIRYQTSAVPREHNGNEIVDVMCHATLTHRLMSPHRVPNYNLFVMDEAHFTDPASIAA 297 GL +++ T A +G E++D MCHATLT+R++ P R+ N+ + +MDEAHF DPASIAA Sbjct 1726 GLDVKFHTQAFSAHGSGREVIDAMCHATLTYRMLEPTRIVNWEVIIMDEAHFLDPASIAA 1785 Query 298 RGYISTKVELGEAAAIFMTATPPGTSDPFPESNSPISDLQTEIPDRAWNSGYEWITEYTG 357 RG+ + + E+A I MTATPPGTSD FP SN I D+QT+IP WN+G++WI Sbjct 1786 RGWAAHRARANESATILMTATPPGTSDEFPHSNGEIEDVQTDIPSEPWNTGHDWILADKR 1845 Query 358 KTVWFVPSVKMGNEIALCLQRAGKKVVQLNRKSYETEYPKCKNDDWDFVITTDISEMGAN 417 T WF+PS++ N +A L++AGK VV LNRK++E EYP K DF++ TDI+EMGAN Sbjct 1846 PTAWFLPSIRAANVMAASLRKAGKSVVVLNRKTFEREYPTIKQKKPDFILATDIAEMGAN 1905 Query 418 FKASRVIDSRKSVKPTIITEGEGRVILGEPSAVTAASAAQRRGRIGRNPSQVGDEYCYGG 477 RV+D R + KP ++ EG I G P ++A+SAAQRRGRIGRNP++ GD Y Y Sbjct 1906 LCVERVLDCRTAFKPVLVDEGRKVAIKG-PLRISASSAAQRRGRIGRNPNRDGDSYYYSE 1964 Query 478 HTNEDDSNFAHWTEARIMLDNINMPNGLIAQFYQPEREKVYTMDGEYRLRGEERKNFLEL 537 T+ED+++ W EA ++LDN+ + G++A Y E K GE RLR ++RK F EL Sbjct 1965 PTSEDNAHHVCWLEASMLLDNMEVRGGMVAPLYGVEGTKTPVSPGEMRLRDDQRKVFREL 2024 Query 538 LRTADLPVWLAYKVAAAGVSYHDRRWCFDGPRTNTILEDNNE-VEVITKLGERKILRPRW 596 +R D PVWL+++VA AG+ +DR+WCF+GP + IL D+ E V+ G +K LRPRW Sbjct 2025 VRNCDQPVWLSWQVAKAGLKTNDRKWCFEGPDEHEILNDSGETVKCRAPGGAKKPLRPRW 2084 Query 597 IDARVYSDHQALKAFKDFASGKR 619 D RV SD AL F FA G+R Sbjct 2085 CDERVSSDQSALADFIKFAEGRR 2107 >RecName: Full=Genome polyprotein; Contains: RecName: Full=Capsid protein C; AltName: Full=Core protein; Contains: RecName: Full=Protein prM; Contains: RecName: Full=Peptide pr; Contains: RecName: Full=Small envelope protein M; AltName: Full=Matrix protein; Contains: RecName: Full=Envelope protein E; Contains: RecName: Full=Non-structural protein 1; Short=NS1; Contains: RecName: Full=Non-structural protein 2A; Short=NS2A; Contains: RecName: Full=Non-structural protein 2A-alpha; Short=NS2A-alpha; Contains: RecName: Full=Serine protease subunit NS2B; AltName: Full=Flavivirin protease NS2B regulatory subunit; AltName: Full=Non-structural protein 2B; Contains: RecName: Full=Serine protease NS3; AltName: Full=Flavivirin protease NS3 catalytic subunit; AltName: Full=Non-structural protein 3; Contains: RecName: Full=Non-structural protein 4A; Short=NS4A; Contains: RecName: Full=Peptide 2k; Contains: RecName: Full=Non-structural protein 4B; Short=NS4B; Contains: RecName: Full=RNA-directed RNA polymerase NS5; AltName: Full=Non-structural protein 5 [Yellow fever virus isolate Angola/14FA/1971] Sequence ID: Q1X881.1 Length: 3412 Range 1: 1486 to 2107 Score:649 bits(1674), Expect:0.0, Method:Compositional matrix adjust., Identities:320/623(51%), Positives:424/623(68%), Gaps:5/623(0%) Query 1 GGVLWDTPSPKEYKKGD-TTTGVYRIMTRGLLGSYQAGAGVMVEGVFHTLWHTTKGAALM 59 G VLWD P+PK ++ + G+Y I LG+ Q G GV GVFHT+WH T+GA L+ Sbjct 1486 GDVLWDIPTPKVIEECEHLEDGIYGIFQSTFLGASQRGVGVAQGGVFHTMWHVTRGAFLL 1545 Query 60 SGEGRLDPYWGSVKEDRLCYGGPWKLQHKWNGQDEVQMIVVEPGKNVKNVQTKPGVFKTP 119 +L P W SVKED + YGG WKL +W+G++EVQ+I PGK+V NVQTKP +F+ Sbjct 1546 RNGKKLVPSWASVKEDLVAYGGSWKLDGRWDGEEEVQLIAAVPGKSVVNVQTKPSLFRVK 1605 Query 120 EG-EIGAVTLDFPTGTSGSPIVDKNGDVIGLYGNGVIMPNGSYISAIVQGERMDEPIPAG 178 G EIGAV LD+P+GTSGSPIV++NG+V+GLYGNG+++ + S++SAI Q E +E Sbjct 1606 NGGEIGAVALDYPSGTSGSPIVNRNGEVVGLYGNGILVGDNSFVSAISQTELKEESKEEL 1665 Query 179 FE-PEMLRKKQITVLDLHPGAGKTRRILPQIIKEAINRRLRTAVLAPTRVVAAEMAEALR 237 E P ML+K T+LD HPGAGKTRR LPQI+ E RRLRT VLAPTRVV +EM EA + Sbjct 1666 QEIPTMLKKGMTTILDFHPGAGKTRRFLPQILAECARRRLRTLVLAPTRVVLSEMKEAFQ 1725 Query 238 GLPIRYQTSAVPREHNGNEIVDVMCHATLTHRLMSPHRVPNYNLFVMDEAHFTDPASIAA 297 GL +++ T A +G E++D MCHATLT+R++ P RV N+ + +MDEAHF DPASIAA Sbjct 1726 GLDVKFHTQAFSAHGSGKEVIDAMCHATLTYRMLEPTRVVNWEVIIMDEAHFLDPASIAA 1785 Query 298 RGYISTKVELGEAAAIFMTATPPGTSDPFPESNSPISDLQTEIPDRAWNSGYEWITEYTG 357 RG+ + + E+A I MTATPPGTSD FP SN I D+QT+IP W +G+EWI Sbjct 1786 RGWAAHRARANESATILMTATPPGTSDEFPHSNGEIEDVQTDIPSEPWTAGHEWILADKR 1845 Query 358 KTVWFVPSVKMGNEIALCLQRAGKKVVQLNRKSYETEYPKCKNDDWDFVITTDISEMGAN 417 T WF+PS++ N +A L++AGK VV LNRK++E EYP K DF++ TDI+EMGAN Sbjct 1846 PTAWFLPSIRAANVMAASLRKAGKNVVVLNRKTFEKEYPTIKQKKPDFILATDIAEMGAN 1905 Query 418 FKASRVIDSRKSVKPTIITEGEGRVILGEPSAVTAASAAQRRGRIGRNPSQVGDEYCYGG 477 RV+D R + KP ++ EG+ I G P ++A+SAAQRRGRIGRNP++ GD Y Y Sbjct 1906 LCVERVLDCRTAYKPVLVDEGKKVAIKG-PLRISASSAAQRRGRIGRNPNRDGDSYYYSE 1964 Query 478 HTNEDDSNFAHWTEARIMLDNINMPNGLIAQFYQPEREKVYTMDGEYRLRGEERKNFLEL 537 T+ED+++ W EA ++LDN+ + G++A Y E K GE RLR ++R+ F EL Sbjct 1965 PTSEDNAHHVCWLEASMLLDNMEVRGGMVAPLYGIEGTKTPVSPGEMRLRDDQRRVFREL 2024 Query 538 LRTADLPVWLAYKVAAAGVSYHDRRWCFDGPRTNTILEDNNE-VEVITKLGERKILRPRW 596 +R DLPVWLA++VA AG+ +DR+WCF+GP + IL DN E V+ + G ++ LRPRW Sbjct 2025 VRGCDLPVWLAWQVAKAGLKTNDRKWCFEGPEEHEILNDNGETVKCRSPGGAKRALRPRW 2084 Query 597 IDARVYSDHQALKAFKDFASGKR 619 D RV SD AL F FA G+R Sbjct 2085 CDERVSSDQSALADFIKFAEGRR 2107 >RecName: Full=Genome polyprotein; Contains: RecName: Full=Capsid protein C; AltName: Full=Core protein; Contains: RecName: Full=Protein prM; Contains: RecName: Full=Peptide pr; Contains: RecName: Full=Small envelope protein M; AltName: Full=Matrix protein; Contains: RecName: Full=Envelope protein E; Contains: RecName: Full=Non-structural protein 1; Short=NS1; Contains: RecName: Full=Non-structural protein 2A; Short=NS2A; Contains: RecName: Full=Non-structural protein 2A-alpha; Short=NS2A-alpha; Contains: RecName: Full=Serine protease subunit NS2B; AltName: Full=Flavivirin protease NS2B regulatory subunit; AltName: Full=Non-structural protein 2B; Contains: RecName: Full=Serine protease NS3; AltName: Full=Flavivirin protease NS3 catalytic subunit; AltName: Full=Non-structural protein 3; Contains: RecName: Full=Non-structural protein 4A; Short=NS4A; Contains: RecName: Full=Peptide 2k; Contains: RecName: Full=Non-structural protein 4B; Short=NS4B; Contains: RecName: Full=RNA-directed RNA polymerase NS5; AltName: Full=Non-structural protein 5 [Edge Hill virus] Sequence ID: C8XPB2.1 Length: 3401 Range 1: 1481 to 2102 Score:649 bits(1673), Expect:0.0, Method:Compositional matrix adjust., Identities:321/625(51%), Positives:423/625(67%), Gaps:9/625(1%) Query 1 GGVLWDTP-SPKEYKKGDTTTGVYRIMTRGLLGSYQAGAGVMVEGVFHTLWHTTKGAALM 59 GGVLWD P +P + GVY I+ GL+G QAG GV EGVFHT+WH T+G LM Sbjct 1481 GGVLWDIPIAPPVEEAEPLEDGVYAILQSGLMGKAQAGVGVAQEGVFHTMWHVTRGGFLM 1540 Query 60 SGEGRLDPYWGSVKEDRLCYGGPWKLQHKWNGQDEVQMIVVEPGKNVKNVQTKPGVFKTP 119 G RL P+W SVK D +CYGG WKL KW+G +EVQ+I V PGK NVQTKPGVF+ Sbjct 1541 VGGKRLTPHWASVKRDLICYGGNWKLDGKWDGVEEVQLIAVAPGKAPTNVQTKPGVFRMA 1600 Query 120 EG-EIGAVTLDFPTGTSGSPIVDKNGDVIGLYGNGVIMPNGSYISAIVQ---GERMDEPI 175 +G EIGAV LD+P+GTSGSPIV++ G VIGLYGNG+++ Y+S+I Q GE + E Sbjct 1601 DGTEIGAVALDYPSGTSGSPIVNEKGQVIGLYGNGIVIGGSGYVSSIAQIAGGEGVTEE- 1659 Query 176 PAGFEPEMLRKKQITVLDLHPGAGKTRRILPQIIKEAINRRLRTAVLAPTRVVAAEMAEA 235 P MLRK ++TVLD HPGAGKTR LP I+KE + R+LRT VLAPTRVV +EM EA Sbjct 1660 PLLDTATMLRKGKLTVLDYHPGAGKTRIFLPYILKECVRRKLRTLVLAPTRVVLSEMREA 1719 Query 236 LRGLPIRYQTSAVPREHNGNEIVDVMCHATLTHRLMSPHRVPNYNLFVMDEAHFTDPASI 295 LR + ++Y T A G E+VD MCHATL+HR++ R N+ + +MDEAH+ DP SI Sbjct 1720 LRDVAVKYHTQAFQAAGTGRELVDAMCHATLSHRMLESSRSVNWEVIIMDEAHYMDPTSI 1779 Query 296 AARGYISTKVELGEAAAIFMTATPPGTSDPFPESNSPISDLQTEIPDRAWNSGYEWITEY 355 AARG+ + K E+A IFMTATPPG+++ FPESN I DL+ +IP WN G+EWI E Sbjct 1780 AARGWAAHKANNHESAVIFMTATPPGSANEFPESNGEIEDLRRDIPTEPWNKGHEWILED 1839 Query 356 TGKTVWFVPSVKMGNEIALCLQRAGKKVVQLNRKSYETEYPKCKNDDWDFVITTDISEMG 415 TVWF+PS++ N IA CL+R+ + VV LNR+++ET YP K DF++ TDI+EMG Sbjct 1840 RRPTVWFLPSIRAANNIAACLRRSERSVVVLNRQTFETVYPTIKTKKPDFILATDIAEMG 1899 Query 416 ANFKASRVIDSRKSVKPTIITEGEGRVILGEPSAVTAASAAQRRGRIGRNPSQVGDEYCY 475 AN RVID R S KP + T +GRV++ P + A++AAQRRGR+GR + D Y Y Sbjct 1900 ANLGVERVIDCRTSYKPVLTT--DGRVVIKGPLRIPASAAAQRRGRVGRCKDRDTDSYVY 1957 Query 476 GGHTNEDDSNFAHWTEARIMLDNINMPNGLIAQFYQPEREKVYTMDGEYRLRGEERKNFL 535 T+ED+ ++ WTEA ++LDN+ + G++A Y E +K + GE RLR ++RK F Sbjct 1958 SEETSEDNGHYVCWTEASMLLDNMEVKGGMVAPLYDVEAQKTEMVPGEARLRDDQRKVFR 2017 Query 536 ELLRTADLPVWLAYKVAAAGVSYHDRRWCFDGPRTNTILEDNNE-VEVITKLGERKILRP 594 L++ DLPVW++++VA +G+ DR+WCFDG NTIL DN E + + G+RK L P Sbjct 2018 TLIKRYDLPVWVSWQVAKSGLMLEDRKWCFDGDDENTILNDNGEKILARSPGGQRKFLCP 2077 Query 595 RWIDARVYSDHQALKAFKDFASGKR 619 RW D+R+Y D+ +L +F FA G+R Sbjct 2078 RWNDSRLYYDNASLMSFLAFAEGRR 2102 >RecName: Full=Genome polyprotein; Contains: RecName: Full=Capsid protein C; AltName: Full=Core protein; Contains: RecName: Full=Protein prM; Contains: RecName: Full=Peptide pr; Contains: RecName: Full=Small envelope protein M; AltName: Full=Matrix protein; Contains: RecName: Full=Envelope protein E; Contains: RecName: Full=Non-structural protein 1; Short=NS1; Contains: RecName: Full=Non-structural protein 2A; Short=NS2A; Contains: RecName: Full=Non-structural protein 2A-alpha; Short=NS2A-alpha; Contains: RecName: Full=Serine protease subunit NS2B; AltName: Full=Flavivirin protease NS2B regulatory subunit; AltName: Full=Non-structural protein 2B; Contains: RecName: Full=Serine protease NS3; AltName: Full=Flavivirin protease NS3 catalytic subunit; AltName: Full=Non-structural protein 3; Contains: RecName: Full=Non-structural protein 4A; Short=NS4A; Contains: RecName: Full=Peptide 2k; Contains: RecName: Full=Non-structural protein 4B; Short=NS4B; Contains: RecName: Full=RNA-directed RNA polymerase NS5; AltName: Full=Non-structural protein 5 [Yellow fever virus isolate Ivory Coast/85-82H/1982] Sequence ID: Q98803.1 Length: 3411 Range 1: 1486 to 2107 Score:649 bits(1673), Expect:0.0, Method:Compositional matrix adjust., Identities:320/623(51%), Positives:423/623(67%), Gaps:5/623(0%) Query 1 GGVLWDTPSPKEYKKGD-TTTGVYRIMTRGLLGSYQAGAGVMVEGVFHTLWHTTKGAALM 59 G VLWD P+PK ++ + G+Y I LG+ Q G GV GVFHT+WH T+GA L+ Sbjct 1486 GDVLWDIPTPKIIEECEHLEDGIYGIFQSTFLGASQRGVGVAQGGVFHTMWHVTRGAFLV 1545 Query 60 SGEGRLDPYWGSVKEDRLCYGGPWKLQHKWNGQDEVQMIVVEPGKNVKNVQTKPGVFKTP 119 +L P W SVKED + YGG WKL+ +W+G++EVQ+I PGKNV NVQTKP +FK Sbjct 1546 RNGKKLIPSWASVKEDLVAYGGSWKLEGRWDGEEEVQLIAAVPGKNVVNVQTKPSLFKVR 1605 Query 120 EG-EIGAVTLDFPTGTSGSPIVDKNGDVIGLYGNGVIMPNGSYISAIVQGERMDEPIPAG 178 G EIGAV LD+P+GTSGSPIV++NG+VIGLYGNG+++ + S++SAI Q E +E Sbjct 1606 NGGEIGAVALDYPSGTSGSPIVNRNGEVIGLYGNGILVGDNSFVSAISQTEVKEEGKEEL 1665 Query 179 FE-PEMLRKKQITVLDLHPGAGKTRRILPQIIKEAINRRLRTAVLAPTRVVAAEMAEALR 237 E P ML+K T+LD HPGAGKTRR LPQI+ E RRLRT VLAPTRVV +EM EA Sbjct 1666 QEIPTMLKKGMTTILDYHPGAGKTRRFLPQILAECARRRLRTLVLAPTRVVLSEMKEAFH 1725 Query 238 GLPIRYQTSAVPREHNGNEIVDVMCHATLTHRLMSPHRVPNYNLFVMDEAHFTDPASIAA 297 GL +++ T A +G E++D MCHATLT+R++ P R+ N+ + +MDEAHF DPASIAA Sbjct 1726 GLDVKFHTQAFSAHGSGREVIDAMCHATLTYRMLEPTRIVNWEVIIMDEAHFLDPASIAA 1785 Query 298 RGYISTKVELGEAAAIFMTATPPGTSDPFPESNSPISDLQTEIPDRAWNSGYEWITEYTG 357 RG+ + + E+A I MTATPPGTSD FP SN I D+QT+IP WN+G++WI Sbjct 1786 RGWAAHRARANESATILMTATPPGTSDEFPHSNGEIEDVQTDIPSEPWNTGHDWILADKR 1845 Query 358 KTVWFVPSVKMGNEIALCLQRAGKKVVQLNRKSYETEYPKCKNDDWDFVITTDISEMGAN 417 T WF+PS++ N +A L++AGK VV LNRK++E EYP K DF++ TDI+EMGAN Sbjct 1846 PTAWFLPSIRAANVMAASLRKAGKSVVVLNRKTFEKEYPTIKQKKPDFILATDIAEMGAN 1905 Query 418 FKASRVIDSRKSVKPTIITEGEGRVILGEPSAVTAASAAQRRGRIGRNPSQVGDEYCYGG 477 RV+D R + KP ++ EG I G P ++A+SAAQRRGRIGRNP++ GD Y Y Sbjct 1906 LCVDRVLDCRTAFKPVLVDEGRKVAIKG-PLRISASSAAQRRGRIGRNPNRDGDSYYYSE 1964 Query 478 HTNEDDSNFAHWTEARIMLDNINMPNGLIAQFYQPEREKVYTMDGEYRLRGEERKNFLEL 537 T+ED+++ W EA ++LDN+ + G++A Y E K GE RLR ++R+ EL Sbjct 1965 PTSEDNAHHVCWLEASMLLDNMEVRGGMVAPLYGIEGTKTPVSPGEMRLRDDQRRVSREL 2024 Query 538 LRTADLPVWLAYKVAAAGVSYHDRRWCFDGPRTNTILEDNNE-VEVITKLGERKILRPRW 596 +R DLPVWL+++VA AG+ +DR+WCFDGP+ + IL D+ E V+ G ++ LRPRW Sbjct 2025 VRNCDLPVWLSWQVAKAGLKTNDRKWCFDGPKEHEILNDSGETVKCRAPGGAKRPLRPRW 2084 Query 597 IDARVYSDHQALKAFKDFASGKR 619 D RV SD AL F FA G+R Sbjct 2085 CDERVSSDQSALADFIKFAEGRR 2107 >RecName: Full=Genome polyprotein; Contains: RecName: Full=Capsid protein C; AltName: Full=Core protein; Contains: RecName: Full=Protein prM; Contains: RecName: Full=Peptide pr; Contains: RecName: Full=Small envelope protein M; AltName: Full=Matrix protein; Contains: RecName: Full=Envelope protein E; Contains: RecName: Full=Non-structural protein 1; Short=NS1; Contains: RecName: Full=Non-structural protein 2A; Short=NS2A; Contains: RecName: Full=Non-structural protein 2A-alpha; Short=NS2A-alpha; Contains: RecName: Full=Serine protease subunit NS2B; AltName: Full=Flavivirin protease NS2B regulatory subunit; AltName: Full=Non-structural protein 2B; Contains: RecName: Full=Serine protease NS3; AltName: Full=Flavivirin protease NS3 catalytic subunit; AltName: Full=Non-structural protein 3; Contains: RecName: Full=Non-structural protein 4A; Short=NS4A; Contains: RecName: Full=Peptide 2k; Contains: RecName: Full=Non-structural protein 4B; Short=NS4B; Contains: RecName: Full=RNA-directed RNA polymerase NS5; AltName: Full=Non-structural protein 5 [Yellow fever virus isolate Ethiopia/Couma/1961] Sequence ID: Q074N0.1 Length: 3412 Range 1: 1486 to 2107 Score:648 bits(1672), Expect:0.0, Method:Compositional matrix adjust., Identities:321/623(52%), Positives:419/623(67%), Gaps:5/623(0%) Query 1 GGVLWDTPSPKEYKKGD-TTTGVYRIMTRGLLGSYQAGAGVMVEGVFHTLWHTTKGAALM 59 G VLWD P+PK ++ + G+Y I LG+ Q G GV GVFHT+WH T+GA L+ Sbjct 1486 GDVLWDIPTPKVIEECEYLEDGIYGIFQSTFLGASQRGVGVAQGGVFHTMWHVTRGAFLL 1545 Query 60 SGEGRLDPYWGSVKEDRLCYGGPWKLQHKWNGQDEVQMIVVEPGKNVKNVQTKPGVFKTP 119 +L P W SVKED + YGG WKL KW+G++EVQ+I PGK V NVQTKP VFK Sbjct 1546 RNGKKLVPSWASVKEDLVAYGGSWKLDGKWDGEEEVQLIAAVPGKAVVNVQTKPSVFKVR 1605 Query 120 EG-EIGAVTLDFPTGTSGSPIVDKNGDVIGLYGNGVIMPNGSYISAIVQGERMDEPIPAG 178 G EIGAV LD+P+GTSGSPIV+++G+V+GLYGNG+++ + S++SAI Q E +E Sbjct 1606 NGGEIGAVALDYPSGTSGSPIVNRSGEVVGLYGNGILVGDNSFVSAISQTEVKEESKEEL 1665 Query 179 FE-PEMLRKKQITVLDLHPGAGKTRRILPQIIKEAINRRLRTAVLAPTRVVAAEMAEALR 237 E P ML+K T+LD HPGAGKTRR LPQI+ E RRLRT VLAPTRVV +EM EA Sbjct 1666 QEIPTMLKKGMTTILDFHPGAGKTRRFLPQILAECARRRLRTLVLAPTRVVLSEMKEAFH 1725 Query 238 GLPIRYQTSAVPREHNGNEIVDVMCHATLTHRLMSPHRVPNYNLFVMDEAHFTDPASIAA 297 GL +++ T A +G E++D MCHATLT+R++ P R N+ + +MDEAHF DPASIAA Sbjct 1726 GLDVKFHTQAFSAHGSGKEVIDAMCHATLTYRMLEPTRAVNWEVIIMDEAHFLDPASIAA 1785 Query 298 RGYISTKVELGEAAAIFMTATPPGTSDPFPESNSPISDLQTEIPDRAWNSGYEWITEYTG 357 RG+ + + E+A I MTATPPGTSD FP SN I D+QT+IP W SG+EWI Sbjct 1786 RGWAAHRARANESATILMTATPPGTSDEFPHSNGEIEDVQTDIPSEPWTSGHEWILADKR 1845 Query 358 KTVWFVPSVKMGNEIALCLQRAGKKVVQLNRKSYETEYPKCKNDDWDFVITTDISEMGAN 417 T WF+PS++ N +A L++AGK VV LNRK++E EYP K DF++ TDI+EMGAN Sbjct 1846 PTAWFLPSIRAANVMAASLRKAGKSVVVLNRKTFEKEYPTIKQKRPDFILATDIAEMGAN 1905 Query 418 FKASRVIDSRKSVKPTIITEGEGRVILGEPSAVTAASAAQRRGRIGRNPSQVGDEYCYGG 477 RV+D R + KP ++ EG I G P ++A+SAAQRRGRIGRNP++ GD Y Y Sbjct 1906 LCVERVLDCRTAYKPVLVDEGRKVAIKG-PLRISASSAAQRRGRIGRNPNRDGDSYYYSE 1964 Query 478 HTNEDDSNFAHWTEARIMLDNINMPNGLIAQFYQPEREKVYTMDGEYRLRGEERKNFLEL 537 T+ED+++ W EA ++LDN+ + G++A Y E K GE RLR ++R+ F EL Sbjct 1965 PTSEDNAHHVCWLEASMLLDNMEVRGGMVAPLYGIEGTKTPVSPGEMRLRDDQRRVFREL 2024 Query 538 LRTADLPVWLAYKVAAAGVSYHDRRWCFDGPRTNTILEDNNE-VEVITKLGERKILRPRW 596 +R DLPVWL+++VA G+ +DR+WCF+GP + IL DN E V+ + G +K LRPRW Sbjct 2025 VRGCDLPVWLSWQVAKPGLKTNDRKWCFEGPEEHEILNDNGETVKCRSPGGAKKALRPRW 2084 Query 597 IDARVYSDHQALKAFKDFASGKR 619 D RV SD AL F FA G+R Sbjct 2085 CDERVSSDQSALADFIKFAEGRR 2107 >RecName: Full=Genome polyprotein; Contains: RecName: Full=Capsid protein C; AltName: Full=Core protein; Contains: RecName: Full=Protein prM; Contains: RecName: Full=Peptide pr; Contains: RecName: Full=Small envelope protein M; AltName: Full=Matrix protein; Contains: RecName: Full=Envelope protein E; Contains: RecName: Full=Non-structural protein 1; Short=NS1; Contains: RecName: Full=Non-structural protein 2A; Short=NS2A; Contains: RecName: Full=Non-structural protein 2A-alpha; Short=NS2A-alpha; Contains: RecName: Full=Serine protease subunit NS2B; AltName: Full=Flavivirin protease NS2B regulatory subunit; AltName: Full=Non-structural protein 2B; Contains: RecName: Full=Serine protease NS3; AltName: Full=Flavivirin protease NS3 catalytic subunit; AltName: Full=Non-structural protein 3; Contains: RecName: Full=Non-structural protein 4A; Short=NS4A; Contains: RecName: Full=Peptide 2k; Contains: RecName: Full=Non-structural protein 4B; Short=NS4B; Contains: RecName: Full=RNA-directed RNA polymerase NS5; AltName: Full=Non-structural protein 5 [Wesselsbron virus] Sequence ID: C5H431.1 Length: 3405 Range 1: 1481 to 2102 Score:643 bits(1659), Expect:0.0, Method:Compositional matrix adjust., Identities:318/625(51%), Positives:422/625(67%), Gaps:10/625(1%) Query 2 GVLWDTPS---PKEYKKGDTTTGVYRIMTRGLLGSYQAGAGVMVEGVFHTLWHTTKGAAL 58 GVLWD P+ P+E + GVY I LG Q G GV+ +GVFHT+WH T+GA L Sbjct 1481 GVLWDIPTVVPPEEVSYLED--GVYTINQNSFLGLAQKGVGVVKDGVFHTMWHVTRGAFL 1538 Query 59 MSGEGRLDPYWGSVKEDRLCYGGPWKLQHKWNGQDEVQMIVVEPGKNVKNVQTKPGVFKT 118 + R+ P W +VKED + YGG WKL KW+G +EVQ+I V PGK NVQT P VF+ Sbjct 1539 LHAGKRMTPSWANVKEDLISYGGGWKLDAKWDGSEEVQLIAVSPGKVPVNVQTTPSVFQL 1598 Query 119 PEG-EIGAVTLDFPTGTSGSPIVDKNGDVIGLYGNGVIMPNGSYISAIVQGERMDEPIPA 177 G EIGAV LD+P+GTSGSPI++KNGDVIGLYGNG+++ N +Y+SAI Q + ++E Sbjct 1599 KNGKEIGAVNLDYPSGTSGSPILNKNGDVIGLYGNGILIGNNTYVSAIAQSDSVEEGGTE 1658 Query 178 GFE--PEMLRKKQITVLDLHPGAGKTRRILPQIIKEAINRRLRTAVLAPTRVVAAEMAEA 235 + P ML+K +TVLD HPGAGKTR LPQI+KE +L+T VLAPTRVV +EM EA Sbjct 1659 QLQDIPTMLKKGMLTVLDFHPGAGKTRIYLPQILKECEKLKLKTLVLAPTRVVLSEMREA 1718 Query 236 LRGLPIRYQTSAVPREHNGNEIVDVMCHATLTHRLMSPHRVPNYNLFVMDEAHFTDPASI 295 + + I+Y T A G EI+D MCHATLTHR++ P RV N+ + +MDEAHF DPASI Sbjct 1719 MPKMSIKYHTQAFSNTSTGKEIIDAMCHATLTHRMLEPTRVTNWEVVIMDEAHFMDPASI 1778 Query 296 AARGYISTKVELGEAAAIFMTATPPGTSDPFPESNSPISDLQTEIPDRAWNSGYEWITEY 355 AARG+ + + E A IFM+ATPPGTS+ FPESN I D++ ++P W G+EWI E Sbjct 1779 AARGWAAHRSRARECATIFMSATPPGTSNEFPESNGMIEDVKKDVPSEPWTKGHEWILED 1838 Query 356 TGKTVWFVPSVKMGNEIALCLQRAGKKVVQLNRKSYETEYPKCKNDDWDFVITTDISEMG 415 T WF+PS+++ N IA CL++A + VV LNRK++E EYP K+ DF++ TDI+EMG Sbjct 1839 RRPTAWFLPSIRIANSIANCLRKADRTVVVLNRKTFEKEYPTIKSKKPDFILATDIAEMG 1898 Query 416 ANFKASRVIDSRKSVKPTIITEGEGRVILGEPSAVTAASAAQRRGRIGRNPSQVGDEYCY 475 AN K RVID R + KP I+ + +V++ P ++A+SAAQRRGRIGR+P++ D Y Y Sbjct 1899 ANLKVERVIDCRTAYKP-ILVDDATKVMVKGPLRISASSAAQRRGRIGRDPNRDTDTYIY 1957 Query 476 GGHTNEDDSNFAHWTEARIMLDNINMPNGLIAQFYQPEREKVYTMDGEYRLRGEERKNFL 535 G T ED+ ++ WTE ++LDN+ + NG+IA Y E K T GE RLR ++RK F Sbjct 1958 GDSTTEDNGHYVCWTEGSMLLDNMEIRNGMIAPLYGVEGTKTTTSPGETRLREDQRKVFR 2017 Query 536 ELLRTADLPVWLAYKVAAAGVSYHDRRWCFDGPRTNTILEDNNE-VEVITKLGERKILRP 594 EL++ D+PVW +++VA AG+ DR WCFDG NT+L DN E + + G +K L+P Sbjct 2018 ELVKRLDMPVWFSWQVAKAGLKVQDRSWCFDGEDDNTLLNDNGEPILARSPGGAKKPLKP 2077 Query 595 RWIDARVYSDHQALKAFKDFASGKR 619 RW+D RV SD+ +L F FA G+R Sbjct 2078 RWVDTRVCSDNASLIDFIKFAEGRR 2102 >RecName: Full=Genome polyprotein; Contains: RecName: Full=Capsid protein C; AltName: Full=Core protein; Contains: RecName: Full=Protein prM; Contains: RecName: Full=Peptide pr; Contains: RecName: Full=Small envelope protein M; AltName: Full=Matrix protein; Contains: RecName: Full=Envelope protein E; Contains: RecName: Full=Non-structural protein 1; Short=NS1; Contains: RecName: Full=Non-structural protein 2A; Short=NS2A; Contains: RecName: Full=Non-structural protein 2A-alpha; Short=NS2A-alpha; Contains: RecName: Full=Serine protease subunit NS2B; AltName: Full=Flavivirin protease NS2B regulatory subunit; AltName: Full=Non-structural protein 2B; Contains: RecName: Full=Serine protease NS3; AltName: Full=Flavivirin protease NS3 catalytic subunit; AltName: Full=Non-structural protein 3; Contains: RecName: Full=Non-structural protein 4A; Short=NS4A; Contains: RecName: Full=Peptide 2k; Contains: RecName: Full=Non-structural protein 4B; Short=NS4B; Contains: RecName: Full=RNA-directed RNA polymerase NS5; AltName: Full=Non-structural protein 5 [Banzi virus] Sequence ID: C8XPA8.1 Length: 3393 Range 1: 1471 to 2089 Score:637 bits(1643), Expect:0.0, Method:Compositional matrix adjust., Identities:320/623(51%), Positives:416/623(66%), Gaps:9/623(1%) Query 2 GVLWDTP-SPKEYKKGDTTTGVYRIMTRGLLGSYQAGAGVMVEGVFHTLWHTTKGAALMS 60 GVLWD P +PK GV+RI+ +GL GS Q G GV +GVFHT+WH T+GA LM Sbjct 1471 GVLWDVPLAPKVEACEHLEDGVFRIIQKGLFGSSQVGIGVAKDGVFHTMWHVTRGAFLMH 1530 Query 61 GEGRLDPYWGSVKEDRLCYGGPWKLQHKWNGQDEVQMIVVEPGKNVKNVQTKPGVFKTPE 120 +L P WGSV++D +CYGG WKL WNG DEVQ+I V PGK NVQTKPG F P Sbjct 1531 SGKQLTPTWGSVRKDLVCYGGTWKLDGAWNGVDEVQLIAVPPGKPATNVQTKPGTFVLPT 1590 Query 121 G-EIGAVTLDFPTGTSGSPIVDKNGDVIGLYGNGVIMPNGSYISAIVQGE--RMDEPIPA 177 G E GAV LDFP+GTSGSPI+D++G+++GLYGNG+++ NG+Y SAI Q + + E Sbjct 1591 GDEAGAVLLDFPSGTSGSPIIDRHGNILGLYGNGIVLENGAYASAISQAQPGSVAEVETP 1650 Query 178 GFEPEMLRKKQITVLDLHPGAGKTRRILPQIIKEAINRRLRTAVLAPTRVVAAEMAEALR 237 G + +MLRK + T+LD HPGAGKTR+ LP I+KE +RLRT VLAPTRVV +EM EAL Sbjct 1651 GLD-KMLRKGEFTMLDYHPGAGKTRKHLPNILKECERKRLRTLVLAPTRVVLSEMKEALT 1709 Query 238 GLPIRYQTSAVPREHNGNEIVDVMCHATLTHRLMSPHRVPNYNLFVMDEAHFTDPASIAA 297 + ++ T A G EI+DVMCHAT HR++ R N+ + +MDEAHF DP SIAA Sbjct 1710 SVQAKFHTQAFNSTTTGREIIDVMCHATFVHRMLEGLRSGNWEVIIMDEAHFLDPTSIAA 1769 Query 298 RGYISTKVELGEAAAIFMTATPPGTSDPFPESNSPISDLQTEIPDRAWNSGYEWITEYTG 357 RG+ K + E+A IFMTATPPGTS+ FPESN+ I D++ EIP W+ G+EWI E Sbjct 1770 RGWAHHKSKTKESAVIFMTATPPGTSNEFPESNAEIEDVKKEIPSEPWSKGHEWILEDRR 1829 Query 358 KTVWFVPSVKMGNEIALCLQRAGKKVVQLNRKSYETEYPKCKNDDWDFVITTDISEMGAN 417 TVWF+PS+K N +A CL++A + VV LNR ++E YP K DF++ TDI+EMGAN Sbjct 1830 PTVWFLPSIKAANVMAACLRKAERSVVVLNRSTFENVYPTIKTKKPDFILATDIAEMGAN 1889 Query 418 FKASRVIDSRKSVKPTIITEGEGRVILGEPSAVTAASAAQRRGRIGRNPSQVGDEYCYGG 477 RVID R + KP ++ E RV L P + AA+AAQRRGR+GRNP + GD Y Y Sbjct 1890 LPVERVIDCRTAYKPVLVDE---RVALKGPLRIAAAAAAQRRGRVGRNPDRDGDTYVYSE 1946 Query 478 HTNEDDSNFAHWTEARIMLDNINMPNGLIAQFYQPEREKVYTMDGEYRLRGEERKNFLEL 537 T E + + WTE ++LDN+ + G +A Y+ E K GE RLR ++RK F L Sbjct 1947 DTCEQNDHLVCWTEGSMLLDNMQVKGGFVAPLYEEEASKTTMTPGECRLRDDQRKVFRTL 2006 Query 538 LRTADLPVWLAYKVAAAGVSYHDRRWCFDGPRTNTILEDNNEV-EVITKLGERKILRPRW 596 +R D+PVWL+++VA +G++ DR+WCFDG N IL DN EV + + G+RK L+PRW Sbjct 2007 IRKHDMPVWLSWQVAKSGLAADDRKWCFDGEDDNAILGDNGEVIKARSPGGQRKELKPRW 2066 Query 597 IDARVYSDHQALKAFKDFASGKR 619 DAR+ SD+ +L F FA G+R Sbjct 2067 SDARIASDNTSLMNFIAFAEGRR 2089 >RecName: Full=Genome polyprotein; Contains: RecName: Full=Peptide 2k; Contains: RecName: Full=Capsid protein C; AltName: Full=Core protein; Contains: RecName: Full=Protein prM; Contains: RecName: Full=Peptide pr; Contains: RecName: Full=Small envelope protein M; AltName: Full=Matrix protein; Contains: RecName: Full=Envelope protein E; Contains: RecName: Full=Non-structural protein 1; Short=NS1; Contains: RecName: Full=Non-structural protein 2A; Short=NS2A; Contains: RecName: Full=Serine protease subunit NS2B; AltName: Full=Flavivirin protease NS2B regulatory subunit; AltName: Full=Non-structural protein 2B; Contains: RecName: Full=Serine protease NS3; AltName: Full=Flavivirin protease NS3 catalytic subunit; AltName: Full=Non-structural protein 3; Contains: RecName: Full=Non-structural protein 4A; Short=NS4A; Contains: RecName: Full=Non-structural protein 4B; Short=NS4B; Contains: RecName: Full=RNA-directed RNA polymerase NS5; AltName: Full=Non-structural protein 5 [Tick-borne encephalitis virus (STRAIN SOFJIN)] Sequence ID: P07720.3 Length: 3412 Range 1: 1512 to 2110 Score:546 bits(1406), Expect:5e-172, Method:Compositional matrix adjust., Identities:292/606(48%), Positives:384/606(63%), Gaps:14/606(2%) Query 21 GVYRIMTRGLL-GSYQAGAGVMVEGVFHTLWHTTKGAALMSGEGRLDPYWGSVKEDRLCY 79 GVYRI + GLL G Q G G +GV HT+WH T+GAAL + PYW VKED +CY Sbjct 1512 GVYRIFSPGLLWGQRQVGVGYGSKGVLHTMWHVTRGAALSIDDAVAGPYWADVKEDVVCY 1571 Query 80 GGPWKLQHKWNGQDEVQMIVVEPGKNVKNVQTKPGVFKTPEGE-IGAVTLDFPTGTSGSP 138 GG W L+ KW G+ VQ+ PG+ + Q +PG G IGAV +D GTSGSP Sbjct 1572 GGAWSLEEKWKGET-VQVHAFPPGRAHEVHQCQPGELLLDTGRRIGAVPIDLAKGTSGSP 1630 Query 139 IVDKNGDVIGLYGNGVIMPNGSYISAIVQGE----RMDEPIPAGFEPEMLRKKQITVLDL 194 I++ G V+GLYGNG + N +Y+S+I QGE R + P PA K QITVLD+ Sbjct 1631 ILNSQGVVVGLYGNG-LKTNETYVSSIAQGEAEKSRPNLP-PAVTGTGWTAKGQITVLDM 1688 Query 195 HPGAGKTRRILPQIIKEAINRRLRTAVLAPTRVVAAEMAEALRGLPIRYQTSAVPREHNG 254 HPG+GKT R+LP++I++ I+RRLRT VLAPTRVV EM AL G +R+ + AV + G Sbjct 1689 HPGSGKTHRVLPELIRQCIDRRLRTLVLAPTRVVLKEMERALNGKRVRFHSPAVGDQQVG 1748 Query 255 NEIVDVMCHATLTHRLMSPHRVPNYNLFVMDEAHFTDPASIAARGYISTKVELGEAAAIF 314 IVDVMCHAT +R + P N+ + +MDEAH+TDP SIAARG++ T + + A + Sbjct 1749 GSIVDVMCHATYVNRRLLPQGRQNWEVAIMDEAHWTDPHSIAARGHLYTLAKENKCALVL 1808 Query 315 MTATPPGTSDPFPESNSPISDLQTEIPDRAWNSGYEWITEYTGKTVWFVPSVKMGNEIAL 374 MTATPPG S+PFPESN IS + +IPD W G++WITEY G+T WFVPS G IA Sbjct 1809 MTATPPGKSEPFPESNGAISSEEKQIPDGEWRDGFDWITEYEGRTAWFVPSSAKGGIIAR 1868 Query 375 CLQRAGKKVVQLNRKSYETEYPKCKNDDWDFVITTDISEMGANFKASRVIDSRKSVKPTI 434 L + GK V+ LN K++E +Y + +++ DFV+TTDISEMGAN SRVID R ++KP Sbjct 1869 TLIQKGKSVICLNSKTFEKDYSRVRDEKPDFVVTTDISEMGANLDVSRVIDGRTNIKP-- 1926 Query 435 ITEGEGRVILGEPSAVTAASAAQRRGRIGRNPSQVGDEYCYGGHTNEDDSNFAHWTEARI 494 E +GRV L VT ASAAQRRGR+GR + DEY Y G ++DDS W EA+I Sbjct 1927 -EEVDGRVELTGTRRVTTASAAQRRGRVGRQEGRT-DEYIYSGQCDDDDSGLVQWKEAQI 1984 Query 495 MLDNINMPNGLIAQFYQPEREKVYTMDGEYRLRGEERKNFLELLRTADLPVWLAYKVAAA 554 +LDNI G +A FY PE++K+ + G +RL E+RK+F LL D WLA+ VAA Sbjct 1985 LLDNITTLRGPVATFYGPEQDKMPEVAGHFRLTEEKRKHFRHLLTHCDFTPWLAWHVAAN 2044 Query 555 GVSYHDRRWCFDGPRTNTILEDNNE-VEVITKLGERKILRPRWIDARVYSDHQALKAFKD 613 S R W ++GP NT+ E N + V + G + LRP W DAR++ + + ++ F Sbjct 2045 VSSVTSRNWTWEGPEENTVDEANGDLVTFRSPNGAERTLRPVWRDARMFREGRDIREFVA 2104 Query 614 FASGKR 619 +ASG+R Sbjct 2105 YASGRR 2110 >RecName: Full=Genome polyprotein; Contains: RecName: Full=Peptide 2k; Contains: RecName: Full=Capsid protein C; AltName: Full=Core protein; Contains: RecName: Full=Protein prM; Contains: RecName: Full=Peptide pr; Contains: RecName: Full=Small envelope protein M; AltName: Full=Matrix protein; Contains: RecName: Full=Envelope protein E; Contains: RecName: Full=Non-structural protein 1; Short=NS1; Contains: RecName: Full=Non-structural protein 2A; Short=NS2A; Contains: RecName: Full=Serine protease subunit NS2B; AltName: Full=Flavivirin protease NS2B regulatory subunit; AltName: Full=Non-structural protein 2B; Contains: RecName: Full=Serine protease NS3; AltName: Full=Flavivirin protease NS3 catalytic subunit; AltName: Full=Non-structural protein 3; Contains: RecName: Full=Non-structural protein 4A; Short=NS4A; Contains: RecName: Full=Non-structural protein 4B; Short=NS4B; Contains: RecName: Full=RNA-directed RNA polymerase NS5; AltName: Full=Non-structural protein 5 [Tick-borne encephalitis virus (WESTERN SUBTYPE)] Sequence ID: P14336.4 Length: 3414 Range 1: 1512 to 2110 Score:540 bits(1392), Expect:4e-170, Method:Compositional matrix adjust., Identities:285/606(47%), Positives:385/606(63%), Gaps:14/606(2%) Query 21 GVYRIMTRGLL-GSYQAGAGVMVEGVFHTLWHTTKGAALMSGEGRLDPYWGSVKEDRLCY 79 GVYRI + GL G Q G G +GV HT+WH T+GAAL + PYW V+ED +CY Sbjct 1512 GVYRIFSPGLFWGQNQVGVGYGSKGVLHTMWHVTRGAALSIDDAVAGPYWADVREDVVCY 1571 Query 80 GGPWKLQHKWNGQDEVQMIVVEPGKNVKNVQTKPGVFKTPEG-EIGAVTLDFPTGTSGSP 138 GG W L+ KW G+ VQ+ PG+ + Q +PG G ++GA+ +D GTSGSP Sbjct 1572 GGAWSLEEKWKGET-VQVHAFPPGRAHEVHQCQPGELILDTGRKLGAIPIDLVKGTSGSP 1630 Query 139 IVDKNGDVIGLYGNGVIMPNGSYISAIVQGE----RMDEPIPAGFEPEMLRKKQITVLDL 194 I++ G V+GLYGNG + N +Y+S+I QGE R + P A K QITVLD+ Sbjct 1631 ILNAQGVVVGLYGNG-LKTNETYVSSIAQGEAEKSRPNLP-QAVVGTGWTSKGQITVLDM 1688 Query 195 HPGAGKTRRILPQIIKEAINRRLRTAVLAPTRVVAAEMAEALRGLPIRYQTSAVPREHNG 254 HPG+GKT R+LP++I++ I+RRLRT VLAPTRVV EM AL G +R+ + AV + G Sbjct 1689 HPGSGKTHRVLPELIRQCIDRRLRTLVLAPTRVVLKEMERALNGKRVRFHSPAVSDQQAG 1748 Query 255 NEIVDVMCHATLTHRLMSPHRVPNYNLFVMDEAHFTDPASIAARGYISTKVELGEAAAIF 314 IVDVMCHAT +R + P N+ + +MDEAH+TDP SIAARG++ T + + A + Sbjct 1749 GAIVDVMCHATYVNRRLLPQGRQNWEVAIMDEAHWTDPHSIAARGHLYTLAKENKCALVL 1808 Query 315 MTATPPGTSDPFPESNSPISDLQTEIPDRAWNSGYEWITEYTGKTVWFVPSVKMGNEIAL 374 MTATPPG S+PFPESN I+ + +IPD W G++WITEY G+T WFVPS+ G IA Sbjct 1809 MTATPPGKSEPFPESNGAITSEERQIPDGEWRDGFDWITEYEGRTAWFVPSIAKGGAIAR 1868 Query 375 CLQRAGKKVVQLNRKSYETEYPKCKNDDWDFVITTDISEMGANFKASRVIDSRKSVKPTI 434 L++ GK V+ LN K++E +Y + +++ DFV+TTDISEMGAN SRVID R ++KP Sbjct 1869 TLRQKGKSVICLNSKTFEKDYSRVRDEKPDFVVTTDISEMGANLDVSRVIDGRTNIKP-- 1926 Query 435 ITEGEGRVILGEPSAVTAASAAQRRGRIGRNPSQVGDEYCYGGHTNEDDSNFAHWTEARI 494 E +G+V L VT ASAAQRRGR+GR + DEY Y G ++DDS W EA+I Sbjct 1927 -EEVDGKVELTGTRRVTTASAAQRRGRVGRQDGRT-DEYIYSGQCDDDDSGLVQWKEAQI 1984 Query 495 MLDNINMPNGLIAQFYQPEREKVYTMDGEYRLRGEERKNFLELLRTADLPVWLAYKVAAA 554 +LDNI G +A FY PE++K+ + G +RL E+RK+F LL D WLA+ VAA Sbjct 1985 LLDNITTLRGPVATFYGPEQDKMPEVAGHFRLTEEKRKHFRHLLTHCDFTPWLAWHVAAN 2044 Query 555 GVSYHDRRWCFDGPRTNTILEDNNE-VEVITKLGERKILRPRWIDARVYSDHQALKAFKD 613 S DR W ++GP N + E + + V + G + LRP W DAR++ + + +K F Sbjct 2045 VSSVTDRSWTWEGPEANAVDEASGDLVTFRSPNGAERTLRPVWKDARMFKEGRDIKEFVA 2104 Query 614 FASGKR 619 +ASG+R Sbjct 2105 YASGRR 2110 >RecName: Full=Genome polyprotein; Contains: RecName: Full=Peptide 2k; Contains: RecName: Full=Capsid protein C; AltName: Full=Core protein; Contains: RecName: Full=Protein prM; Contains: RecName: Full=Peptide pr; Contains: RecName: Full=Small envelope protein M; AltName: Full=Matrix protein; Contains: RecName: Full=Envelope protein E; Contains: RecName: Full=Non-structural protein 1; Short=NS1; Contains: RecName: Full=Non-structural protein 2A; Short=NS2A; Contains: RecName: Full=Serine protease subunit NS2B; AltName: Full=Flavivirin protease NS2B regulatory subunit; AltName: Full=Non-structural protein 2B; Contains: RecName: Full=Serine protease NS3; AltName: Full=Flavivirin protease NS3 catalytic subunit; AltName: Full=Non-structural protein 3; Contains: RecName: Full=Non-structural protein 4A; Short=NS4A; Contains: RecName: Full=Non-structural protein 4B; Short=NS4B; Contains: RecName: Full=RNA-directed RNA polymerase NS5; AltName: Full=Non-structural protein 5 [Tick-borne encephalitis virus (strain HYPR)] Sequence ID: Q01299.1 Length: 3414 Range 1: 1512 to 2110 Score:539 bits(1389), Expect:1e-169, Method:Compositional matrix adjust., Identities:285/606(47%), Positives:383/606(63%), Gaps:14/606(2%) Query 21 GVYRIMTRGLL-GSYQAGAGVMVEGVFHTLWHTTKGAALMSGEGRLDPYWGSVKEDRLCY 79 GVYRI + GL G Q G G +GV HT+WH T+GAAL + PYW V+ED +CY Sbjct 1512 GVYRIFSPGLFWGQNQVGVGYGSKGVLHTMWHVTRGAALSIDDAVAGPYWADVREDVVCY 1571 Query 80 GGPWKLQHKWNGQDEVQMIVVEPGKNVKNVQTKPGVFKTPEG-EIGAVTLDFPTGTSGSP 138 GG W L+ KW G+ VQ+ PGK + Q +PG G ++GA+ +D GTSGSP Sbjct 1572 GGAWSLEEKWKGET-VQVHAFPPGKAHEVHQCQPGELILDTGRKLGAIPIDLVKGTSGSP 1630 Query 139 IVDKNGDVIGLYGNGVIMPNGSYISAIVQGE----RMDEPIPAGFEPEMLRKKQITVLDL 194 I++ G V+GLYGNG + N +Y+S+I QGE R + P A K QITVLD+ Sbjct 1631 ILNAQGVVVGLYGNG-LKTNETYVSSIAQGEAEKSRPNLP-QAVVGTGWTSKGQITVLDM 1688 Query 195 HPGAGKTRRILPQIIKEAINRRLRTAVLAPTRVVAAEMAEALRGLPIRYQTSAVPREHNG 254 HPG+GKT R+LP++I++ I+RRLRT VLAPTRVV EM AL G +R+ + AV + G Sbjct 1689 HPGSGKTHRVLPELIRQCIDRRLRTLVLAPTRVVLKEMERALNGKRVRFHSPAVSDQQAG 1748 Query 255 NEIVDVMCHATLTHRLMSPHRVPNYNLFVMDEAHFTDPASIAARGYISTKVELGEAAAIF 314 IVDVMCHAT +R + P N+ + +MDEAH+TDP SIAARG++ T + + A + Sbjct 1749 GAIVDVMCHATYVNRRLLPQGRQNWEVAIMDEAHWTDPHSIAARGHLYTLAKENKCALVL 1808 Query 315 MTATPPGTSDPFPESNSPISDLQTEIPDRAWNSGYEWITEYTGKTVWFVPSVKMGNEIAL 374 MTATPPG S+PFPESN I+ + +IP+ W G++WITEY G+T WFVPS+ G IA Sbjct 1809 MTATPPGKSEPFPESNGAITSEERQIPNGEWRDGFDWITEYEGRTAWFVPSIAKGGAIAR 1868 Query 375 CLQRAGKKVVQLNRKSYETEYPKCKNDDWDFVITTDISEMGANFKASRVIDSRKSVKPTI 434 L++ GK V+ LN K++E +Y + +++ DFV+TTDISEMGAN SRVID R ++KP Sbjct 1869 TLRQKGKSVICLNSKTFEKDYSRVRDEKPDFVVTTDISEMGANLDVSRVIDGRTNIKP-- 1926 Query 435 ITEGEGRVILGEPSAVTAASAAQRRGRIGRNPSQVGDEYCYGGHTNEDDSNFAHWTEARI 494 E +G+V L VT ASAAQRRGR+GR + DEY Y G ++DDS W EA+I Sbjct 1927 -EEVDGKVELTGTRRVTTASAAQRRGRVGRQDGRT-DEYIYSGQCDDDDSGLVQWKEAQI 1984 Query 495 MLDNINMPNGLIAQFYQPEREKVYTMDGEYRLRGEERKNFLELLRTADLPVWLAYKVAAA 554 +LDNI G +A FY PE++K+ + G +RL E+RK+F LL D WLA+ VAA Sbjct 1985 LLDNITTLRGPVATFYGPEQDKMPEVAGHFRLTEEKRKHFRHLLTHCDFTPWLAWHVAAN 2044 Query 555 GVSYHDRRWCFDGPRTNTILE-DNNEVEVITKLGERKILRPRWIDARVYSDHQALKAFKD 613 S DR W ++GP N + E V + G + LRP W DAR++ + + +K F Sbjct 2045 VSSVTDRSWTWEGPEANAVDEASGGLVTFRSPNGAERTLRPVWKDARMFKEGRDIKEFVA 2104 Query 614 FASGKR 619 +ASG+R Sbjct 2105 YASGRR 2110 >RecName: Full=Genome polyprotein; Contains: RecName: Full=Capsid protein C; AltName: Full=Core protein; Contains: RecName: Full=Protein prM; Contains: RecName: Full=Peptide pr; Contains: RecName: Full=Small envelope protein M; AltName: Full=Matrix protein; Contains: RecName: Full=Envelope protein E; Contains: RecName: Full=Non-structural protein 1; Short=NS1; Contains: RecName: Full=Non-structural protein 2A; Short=NS2A; Contains: RecName: Full=Serine protease subunit NS2B; AltName: Full=Flavivirin protease NS2B regulatory subunit; AltName: Full=Non-structural protein 2B; Contains: RecName: Full=Serine protease NS3; AltName: Full=Flavivirin protease NS3 catalytic subunit; AltName: Full=Non-structural protein 3; Contains: RecName: Full=Non-structural protein 4A; Short=NS4A; Contains: RecName: Full=Peptide 2k; Contains: RecName: Full=Non-structural protein 4B; Short=NS4B; Contains: RecName: Full=RNA-directed RNA polymerase NS5; AltName: Full=Non-structural protein 5 [Omsk hemorrhagic fever virus] Sequence ID: Q7T6D2.1 Length: 3414 Range 1: 1512 to 2110 Score:538 bits(1386), Expect:3e-169, Method:Compositional matrix adjust., Identities:282/606(47%), Positives:385/606(63%), Gaps:14/606(2%) Query 21 GVYRIMTRGLL-GSYQAGAGVMVEGVFHTLWHTTKGAALMSGEGRLDPYWGSVKEDRLCY 79 GVYRI++ GLL G Q G G +GV HT+WH T+GAA+ PYW VKED +CY Sbjct 1512 GVYRILSPGLLWGHRQVGVGFGSKGVLHTMWHVTRGAAIFIDNAVAGPYWADVKEDVVCY 1571 Query 80 GGPWKLQHKWNGQDEVQMIVVEPGKNVKNVQTKPGVFKTPEGE-IGAVTLDFPTGTSGSP 138 GG W L+ KW G+ +VQ+ PG+ + Q +PG G IGA+ +D GTSGSP Sbjct 1572 GGAWSLEEKWKGE-KVQVHAFPPGRAHEVHQCQPGELVLDTGRRIGAIPIDLAKGTSGSP 1630 Query 139 IVDKNGDVIGLYGNGVIMPNGSYISAIVQGE----RMDEPIPAGFEPEMLRKKQITVLDL 194 I++ G V+GLYGNG + N +Y+S+I QGE R + P A K ITVLD+ Sbjct 1631 ILNAQGAVVGLYGNG-LRTNETYVSSIAQGEVEKSRPNLP-QAVVGTGWTSKGTITVLDM 1688 Query 195 HPGAGKTRRILPQIIKEAINRRLRTAVLAPTRVVAAEMAEALRGLPIRYQTSAVPREHNG 254 HPG+GKT R+LP++I++ I++RLRT VLAPTRVV EM AL G +R+ + AV + G Sbjct 1689 HPGSGKTHRVLPELIRQCIDKRLRTLVLAPTRVVLKEMERALSGKRVRFHSPAVGDQQTG 1748 Query 255 NEIVDVMCHATLTHRLMSPHRVPNYNLFVMDEAHFTDPASIAARGYISTKVELGEAAAIF 314 N IVDVMCHAT +R + P N+ + +MDEAH+TDP SIAARG++ + + + A + Sbjct 1749 NAIVDVMCHATYVNRRLLPQGRQNWEVAIMDEAHWTDPHSIAARGHLYSMAKENKCALVL 1808 Query 315 MTATPPGTSDPFPESNSPISDLQTEIPDRAWNSGYEWITEYTGKTVWFVPSVKMGNEIAL 374 MTATPPG S+PFPESN I+ + +IP+ W G++WITEY G+T WFVPS+ G IA Sbjct 1809 MTATPPGKSEPFPESNGAITSEERQIPEGEWRDGFDWITEYEGRTAWFVPSIAKGGVIAR 1868 Query 375 CLQRAGKKVVQLNRKSYETEYPKCKNDDWDFVITTDISEMGANFKASRVIDSRKSVKPTI 434 L++ GK V+ LN K++E +Y + +++ DFV+TTDISEMGAN SRVID R ++KP Sbjct 1869 TLRQKGKSVICLNSKTFEKDYSRVRDEKPDFVVTTDISEMGANLDVSRVIDGRTNIKP-- 1926 Query 435 ITEGEGRVILGEPSAVTAASAAQRRGRIGRNPSQVGDEYCYGGHTNEDDSNFAHWTEARI 494 E +G+V L VT ASAAQRRGR+GR+ + DEY Y G ++DDS W EA+I Sbjct 1927 -EEVDGKVELTGTRRVTTASAAQRRGRVGRHDGRT-DEYIYSGQCDDDDSGLVQWKEAQI 1984 Query 495 MLDNINMPNGLIAQFYQPEREKVYTMDGEYRLRGEERKNFLELLRTADLPVWLAYKVAAA 554 +LDNI G +A FY PE++K+ + G +RL E RK+F LL D WLA+ VAA Sbjct 1985 LLDNITTLRGPVATFYGPEQDKMPEVAGHFRLTEERRKHFRHLLTHCDFTPWLAWHVAAN 2044 Query 555 GVSYHDRRWCFDGPRTNTILEDNNE-VEVITKLGERKILRPRWIDARVYSDHQALKAFKD 613 + R W ++GP N + E N + V + G + LRP W DAR++ + + ++ F Sbjct 2045 VSNVTSRSWTWEGPEENAVDEANGDLVTFKSPNGAERTLRPVWRDARMFKEGRDIREFVA 2104 Query 614 FASGKR 619 +ASG+R Sbjct 2105 YASGRR 2110 >RecName: Full=Genome polyprotein; Contains: RecName: Full=Capsid protein C; AltName: Full=Core protein; Contains: RecName: Full=Protein prM; Contains: RecName: Full=Peptide pr; Contains: RecName: Full=Small envelope protein M; AltName: Full=Matrix protein; Contains: RecName: Full=Envelope protein E; Contains: RecName: Full=Non-structural protein 1; Short=NS1; Contains: RecName: Full=Non-structural protein 2A; Short=NS2A; Contains: RecName: Full=Serine protease subunit NS2B; AltName: Full=Flavivirin protease NS2B regulatory subunit; AltName: Full=Non-structural protein 2B; Contains: RecName: Full=Serine protease NS3; AltName: Full=Flavivirin protease NS3 catalytic subunit; AltName: Full=Non-structural protein 3; Contains: RecName: Full=Non-structural protein 4A; Short=NS4A; Contains: RecName: Full=Peptide 2k; Contains: RecName: Full=Non-structural protein 4B; Short=NS4B; Contains: RecName: Full=RNA-directed RNA polymerase NS5; AltName: Full=Non-structural protein 5 [Louping ill virus] Sequence ID: P22338.2 Length: 3414 Range 1: 1512 to 2110 Score:537 bits(1383), Expect:8e-169, Method:Compositional matrix adjust., Identities:286/606(47%), Positives:382/606(63%), Gaps:14/606(2%) Query 21 GVYRIMTRGLL-GSYQAGAGVMVEGVFHTLWHTTKGAALMSGEGRLDPYWGSVKEDRLCY 79 GVYRI + GL G Q G G +GV HT+WH T+GAAL + PYW VKED +CY Sbjct 1512 GVYRIFSPGLFWGQRQVGVGYGHKGVLHTMWHVTRGAALSIDDAVAGPYWADVKEDVVCY 1571 Query 80 GGPWKLQHKWNGQDEVQMIVVEPGKNVKNVQTKPGVFKTPEGE-IGAVTLDFPTGTSGSP 138 GG W L+ KW G+ VQ+ PG+ + Q +PG G+ +GA+ +D GTSGSP Sbjct 1572 GGAWSLEEKWKGET-VQVHAFPPGRAHEVHQCQPGELILDTGKRLGAIPIDLAKGTSGSP 1630 Query 139 IVDKNGDVIGLYGNGVIMPNGSYISAIVQGE----RMDEPIPAGFEPEMLRKKQITVLDL 194 I++ G V+GLYGNG N SY+S+I QGE R + P A K QITVLD+ Sbjct 1631 ILNAQGVVVGLYGNGP-KTNESYVSSIAQGEAEKSRPNLP-QAVVGTGWTSKGQITVLDM 1688 Query 195 HPGAGKTRRILPQIIKEAINRRLRTAVLAPTRVVAAEMAEALRGLPIRYQTSAVPREHNG 254 HPG+GKT R+LP++I++ I+RRL T VLAPTRVV EM AL G +R+ + AV + G Sbjct 1689 HPGSGKTHRVLPELIRQCIDRRLSTLVLAPTRVVLKEMERALSGKRVRFHSPAVSDQQAG 1748 Query 255 NEIVDVMCHATLTHRLMSPHRVPNYNLFVMDEAHFTDPASIAARGYISTKVELGEAAAIF 314 IVDVMCHAT +R + P N+ + +MDEAH+TDP SIAARG++ T + + A + Sbjct 1749 GAIVDVMCHATYVNRRLLPQGRQNWEVAIMDEAHWTDPHSIAARGHLYTLAKENKCALVL 1808 Query 315 MTATPPGTSDPFPESNSPISDLQTEIPDRAWNSGYEWITEYTGKTVWFVPSVKMGNEIAL 374 MTATPPG S+PFPESN I+ + +IPD W G++WITEY G+T WFVPS+ G IA Sbjct 1809 MTATPPGKSEPFPESNGAITSEERQIPDGEWRDGFDWITEYEGRTAWFVPSIAKGGVIAR 1868 Query 375 CLQRAGKKVVQLNRKSYETEYPKCKNDDWDFVITTDISEMGANFKASRVIDSRKSVKPTI 434 L++ GK V+ LN K++E +Y + + + DFV+TTDISEMGAN SRVID R ++KP Sbjct 1869 TLRQKGKSVICLNSKTFEKDYSRVREEKPDFVVTTDISEMGANLDVSRVIDGRTNIKP-- 1926 Query 435 ITEGEGRVILGEPSAVTAASAAQRRGRIGRNPSQVGDEYCYGGHTNEDDSNFAHWTEARI 494 E +G+V L VT ASAAQRRGR+GR + DEY Y G ++DDS W EA+I Sbjct 1927 -EEVDGKVELTGTRRVTTASAAQRRGRVGRQDGRT-DEYIYSGQCDDDDSGLVQWKEAQI 1984 Query 495 MLDNINMPNGLIAQFYQPEREKVYTMDGEYRLRGEERKNFLELLRTADLPVWLAYKVAAA 554 +LDNI G +A FY PE++K+ + G +RL E+RK+F LL D WLA+ VAA Sbjct 1985 LLDNITTLRGPVATFYGPEQDKMPEVAGHFRLTEEKRKHFRHLLTHCDFTPWLAWHVAAN 2044 Query 555 GVSYHDRRWCFDGPRTNTILEDNNE-VEVITKLGERKILRPRWIDARVYSDHQALKAFKD 613 S DR W ++GP N + E + + V + G + LRP W DAR++ + + +K F Sbjct 2045 VSSVTDRSWTWEGPEANAVDEASGDLVTFRSPNGAERTLRPVWRDARMFREGRDIKEFVA 2104 Query 614 FASGKR 619 +ASG+R Sbjct 2105 YASGRR 2110 >RecName: Full=Genome polyprotein; Contains: RecName: Full=Peptide 2k; Contains: RecName: Full=Capsid protein C; AltName: Full=Core protein; Contains: RecName: Full=Protein prM; Contains: RecName: Full=Peptide pr; Contains: RecName: Full=Small envelope protein M; AltName: Full=Matrix protein; Contains: RecName: Full=Envelope protein E; Contains: RecName: Full=Non-structural protein 1; Short=NS1; Contains: RecName: Full=Non-structural protein 2A; Short=NS2A; Contains: RecName: Full=Serine protease subunit NS2B; AltName: Full=Flavivirin protease NS2B regulatory subunit; AltName: Full=Non-structural protein 2B; Contains: RecName: Full=Serine protease NS3; AltName: Full=Flavivirin protease NS3 catalytic subunit; AltName: Full=Non-structural protein 3; Contains: RecName: Full=Non-structural protein 4A; Short=NS4A; Contains: RecName: Full=Non-structural protein 4B; Short=NS4B; Contains: RecName: Full=RNA-directed RNA polymerase NS5; AltName: Full=NS5 [Langat virus (strain TP21)] Sequence ID: P29837.2 Length: 3414 Range 1: 1508 to 2110 Score:531 bits(1367), Expect:1e-166, Method:Compositional matrix adjust., Identities:287/613(47%), Positives:389/613(63%), Gaps:20/613(3%) Query 17 DTTTGVYRIMTRGLL-GSYQAGAGVMVEGVFHTLWHTTKGAALMSGEGRLDPYWGSVKED 75 D GVYRI T GLL G Q G G +GV HT+WH T+GAAL+ + PYW V+ED Sbjct 1508 DVKNGVYRIYTPGLLWGQRQIGVGYGAKGVLHTMWHVTRGAALLVDGVAVGPYWADVRED 1567 Query 76 RLCYGGPWKLQHKWNGQDEVQMIVVEPGKNVKNVQTKPGVFKTPEG-EIGAVTLDFPTGT 134 +CYGG W L+ +W G+ VQ+ PG+ + Q +PG G ++GA+ +D GT Sbjct 1568 VVCYGGAWSLESRWRGET-VQVHAFPPGRAHETHQCQPGELILENGRKMGAIPIDLAKGT 1626 Query 135 SGSPIVDKNGDVIGLYGNGVIMPNGSYISAIVQGE----RMDEP---IPAGFEPEMLRKK 187 SGSPI++ G+V+GLYGNG + N +Y+S+I QGE R + P + G+ K Sbjct 1627 SGSPIMNSQGEVVGLYGNG-LKTNDTYVSSIAQGEVEKSRPNLPQSVVGTGWTA----KG 1681 Query 188 QITVLDLHPGAGKTRRILPQIIKEAINRRLRTAVLAPTRVVAAEMAEALRGLPIRYQTSA 247 QITVLD+HPG+GKT R+LP++I++ + RRLRT VLAPTRVV EM AL G +R+ + A Sbjct 1682 QITVLDMHPGSGKTHRVLPELIRQCVERRLRTLVLAPTRVVLREMERALSGKNVRFHSPA 1741 Query 248 VPREHNGNEIVDVMCHATLTHRLMSPHRVPNYNLFVMDEAHFTDPASIAARGYISTKVEL 307 V +H IVDVMCHAT +R + P N+ + +MDEAH+TDP SIAARG++ + + Sbjct 1742 VTEQHANGAIVDVMCHATYVNRRLLPQGRQNWEVAIMDEAHWTDPHSIAARGHLYSLAKE 1801 Query 308 GEAAAIFMTATPPGTSDPFPESNSPISDLQTEIPDRAWNSGYEWITEYTGKTVWFVPSVK 367 A + MTATPPG S+PFPESN I+ + +IPD W G++WITEY G+T WFVPS+ Sbjct 1802 NRCAFVLMTATPPGKSEPFPESNGAIASEERQIPDGEWRDGFDWITEYEGRTAWFVPSIA 1861 Query 368 MGNEIALCLQRAGKKVVQLNRKSYETEYPKCKNDDWDFVITTDISEMGANFKASRVIDSR 427 G IA L++ GK V+ LN K+++ EY + K++ DFV+TTDISEMGAN +RVID R Sbjct 1862 RGGAIARALRQRGKSVICLNSKTFDKEYSRVKDEKPDFVVTTDISEMGANLDVTRVIDGR 1921 Query 428 KSVKPTIITEGEGRVILGEPSAVTAASAAQRRGRIGRNPSQVGDEYCYGGHTNEDDSNFA 487 ++KP E +GR+ L VT ASAAQRRGR+GR + DEY Y G ++DDS Sbjct 1922 TNIKP---EEVDGRIELTGTRRVTTASAAQRRGRVGRQGGRT-DEYIYSGQCDDDDSGLV 1977 Query 488 HWTEARIMLDNINMPNGLIAQFYQPEREKVYTMDGEYRLRGEERKNFLELLRTADLPVWL 547 W EA+I+LDNI G +A FY PE+E++ G YRL E+RK+F LL D WL Sbjct 1978 QWKEAQILLDNITTARGPVATFYGPEQERMTETAGHYRLPEEKRKHFRHLLAQCDFTPWL 2037 Query 548 AYKVAAAGVSYHDRRWCFDGPRTNTILEDNNE-VEVITKLGERKILRPRWIDARVYSDHQ 606 A+ VAA S DR W ++GP N + E+N E V + G + LRP W DAR++ + + Sbjct 2038 AWHVAANVASVTDRSWTWEGPEENAVDENNGELVTFRSPNGAERTLRPVWRDARMFREGR 2097 Query 607 ALKAFKDFASGKR 619 ++ F +ASG+R Sbjct 2098 DIREFVSYASGRR 2110 >RecName: Full=Genome polyprotein; Contains: RecName: Full=Capsid protein C; AltName: Full=Core protein; Contains: RecName: Full=Protein prM; Contains: RecName: Full=Peptide pr; Contains: RecName: Full=Small envelope protein M; AltName: Full=Matrix protein; Contains: RecName: Full=Envelope protein E; Contains: RecName: Full=Non-structural protein 1; Short=NS1; Contains: RecName: Full=Non-structural protein 2A; Short=NS2A; Contains: RecName: Full=Serine protease subunit NS2B; AltName: Full=Flavivirin protease NS2B regulatory subunit; AltName: Full=Non-structural protein 2B; Contains: RecName: Full=Serine protease NS3; AltName: Full=Flavivirin protease NS3 catalytic subunit; AltName: Full=Non-structural protein 3; Contains: RecName: Full=Non-structural protein 4A; Short=NS4A; Contains: RecName: Full=Peptide 2k; Contains: RecName: Full=Non-structural protein 4B; Short=NS4B; Contains: RecName: Full=RNA-directed RNA polymerase NS5; AltName: Full=Non-structural protein 5 [Kyasanur Forest disease virus] Sequence ID: D7RF80.1 Length: 3416 Range 1: 1514 to 2112 Score:530 bits(1365), Expect:2e-166, Method:Compositional matrix adjust., Identities:276/605(46%), Positives:377/605(62%), Gaps:12/605(1%) Query 21 GVYRIMTRGLL-GSYQAGAGVMVEGVFHTLWHTTKGAALMSGEGRLDPYWGSVKEDRLCY 79 G YRI + GLL G Q G G +GV HT+WH T+GAAL+ E PYW V+ED +CY Sbjct 1514 GAYRIYSPGLLWGHRQIGVGYGAKGVLHTMWHVTRGAALVVDEAISGPYWADVREDVVCY 1573 Query 80 GGPWKLQHKWNGQDEVQMIVVEPGKNVKNVQTKPGVFKTPEG-EIGAVTLDFPTGTSGSP 138 GG W L+ +W G+ VQ+ PG+ + Q +PG G ++GAV +D GTSGSP Sbjct 1574 GGAWSLESRWRGET-VQVHAFPPGRPQETHQCQPGELILENGRKLGAVPIDLSKGTSGSP 1632 Query 139 IVDKNGDVIGLYGNGVIMPNGSYISAIVQGE--RMDEPIPAGFEPE-MLRKKQITVLDLH 195 I++ G+V+GLYGNG + N +Y+S+I QGE + IP + + K QITVLD+H Sbjct 1633 IINAQGEVVGLYGNG-LKTNEAYVSSIAQGEAEKSRPEIPLSVQGTGWMSKGQITVLDMH 1691 Query 196 PGAGKTRRILPQIIKEAINRRLRTAVLAPTRVVAAEMAEALRGLPIRYQTSAVPREHNGN 255 PG+GKT R+LP+++++ +R +RT VLAPTRVV EM AL G +R+ + AV + Sbjct 1692 PGSGKTHRVLPELVRQCADRGMRTLVLAPTRVVLKEMERALAGKKVRFHSPAVEGQTTAG 1751 Query 256 EIVDVMCHATLTHRLMSPHRVPNYNLFVMDEAHFTDPASIAARGYISTKVELGEAAAIFM 315 IVDVMCHAT HR + P N+ + +MDEAH+TDP SIAARG++ + + A + M Sbjct 1752 AIVDVMCHATYVHRRLLPQGRQNWEVAIMDEAHWTDPHSIAARGHLYSLAKENRCALVLM 1811 Query 316 TATPPGTSDPFPESNSPISDLQTEIPDRAWNSGYEWITEYTGKTVWFVPSVKMGNEIALC 375 TATPPG DPFPESN I + IPD W G++WITEY G+T WFVPS+ G +A Sbjct 1812 TATPPGRGDPFPESNGAIMSEERAIPDGEWREGFDWITEYEGRTAWFVPSISKGGAVART 1871 Query 376 LQRAGKKVVQLNRKSYETEYPKCKNDDWDFVITTDISEMGANFKASRVIDSRKSVKPTII 435 L++ GK V+ LN K++E +Y + + + DFV+TTDISEMGAN SRVID R ++KP Sbjct 1872 LRQRGKSVICLNSKTFEKDYLRVREEKPDFVVTTDISEMGANLDVSRVIDGRTNIKP--- 1928 Query 436 TEGEGRVILGEPSAVTAASAAQRRGRIGRNPSQVGDEYCYGGHTNEDDSNFAHWTEARIM 495 E +G+V L VT ASAAQRRGR+GR + DEY Y G ++DD++ W EA+I+ Sbjct 1929 EEVDGKVELTGTRKVTTASAAQRRGRVGRTSGRT-DEYIYSGQCDDDDTSLVQWKEAQIL 1987 Query 496 LDNINMPNGLIAQFYQPEREKVYTMDGEYRLRGEERKNFLELLRTADLPVWLAYKVAAAG 555 LDNI G +A FY PE+ K+ + G YRL E+RK+F L+ D WLA+ VA Sbjct 1988 LDNITTLRGPVATFYGPEQVKMPEVAGHYRLNEEKRKHFRHLMTQCDFTPWLAWHVATNT 2047 Query 556 VSYHDRRWCFDGPRTNTI-LEDNNEVEVITKLGERKILRPRWIDARVYSDHQALKAFKDF 614 + DR W + GP N I D + V T G ++L+P W D R++ + + +K F + Sbjct 2048 SNVLDRSWTWQGPEENAIDGADGDLVRFKTPGGSERVLQPVWKDCRMFREGRDVKDFILY 2107 Query 615 ASGKR 619 ASG+R Sbjct 2108 ASGRR 2112 >RecName: Full=Genome polyprotein; Contains: RecName: Full=Capsid protein C; AltName: Full=Core protein; Contains: RecName: Full=Protein prM; Contains: RecName: Full=Peptide pr; Contains: RecName: Full=Small envelope protein M; AltName: Full=Matrix protein; Contains: RecName: Full=Envelope protein E; Contains: RecName: Full=Non-structural protein 1; Short=NS1; Contains: RecName: Full=Non-structural protein 2A; Short=NS2A; Contains: RecName: Full=Serine protease subunit NS2B; AltName: Full=Flavivirin protease NS2B regulatory subunit; AltName: Full=Non-structural protein 2B; Contains: RecName: Full=Serine protease NS3; AltName: Full=Flavivirin protease NS3 catalytic subunit; AltName: Full=Non-structural protein 3; Contains: RecName: Full=Non-structural protein 4A; Short=NS4A; Contains: RecName: Full=Peptide 2k; Contains: RecName: Full=Non-structural protein 4B; Short=NS4B; Contains: RecName: Full=RNA-directed RNA polymerase NS5; AltName: Full=Non-structural protein 5 [Alkhumra hemorrhagic fever virus] Sequence ID: Q91B85.1 Length: 3416 Range 1: 1514 to 2112 Score:530 bits(1364), Expect:3e-166, Method:Compositional matrix adjust., Identities:274/605(45%), Positives:378/605(62%), Gaps:12/605(1%) Query 21 GVYRIMTRGLL-GSYQAGAGVMVEGVFHTLWHTTKGAALMSGEGRLDPYWGSVKEDRLCY 79 G YRI + GLL G Q G G +GV HT+WH T+GAAL+ E PYW V+ED +CY Sbjct 1514 GAYRIYSPGLLWGHRQIGVGYGAKGVLHTMWHVTRGAALVVEEAISGPYWADVREDVVCY 1573 Query 80 GGPWKLQHKWNGQDEVQMIVVEPGKNVKNVQTKPGVFKTPEG-EIGAVTLDFPTGTSGSP 138 GG W L+ +W G+ VQ+ PG+ + Q +PG G ++GAV +D GTSGSP Sbjct 1574 GGAWSLESRWRGET-VQVHAFPPGRPQETHQCQPGELILENGRKLGAVPIDLSKGTSGSP 1632 Query 139 IVDKNGDVIGLYGNGVIMPNGSYISAIVQGE--RMDEPIPAGFEPE-MLRKKQITVLDLH 195 I++ G+V+GLYGNG + N +Y+S+I QGE + +P + + K QITVLD+H Sbjct 1633 IINAQGEVVGLYGNG-LKTNEAYVSSIAQGEAEKSRPELPLSVQGTGWMSKGQITVLDMH 1691 Query 196 PGAGKTRRILPQIIKEAINRRLRTAVLAPTRVVAAEMAEALRGLPIRYQTSAVPREHNGN 255 PG+GKT R+LP+++++ NR +RT VLAPTRVV EM +AL G +R+ + AV + Sbjct 1692 PGSGKTHRVLPELVRQCANRGMRTLVLAPTRVVLKEMEKALAGKKVRFHSPAVEGQSTAG 1751 Query 256 EIVDVMCHATLTHRLMSPHRVPNYNLFVMDEAHFTDPASIAARGYISTKVELGEAAAIFM 315 +VDVMCHAT HR + P N+ + +MDEAH+TDP SIAARG++ + + A + M Sbjct 1752 AVVDVMCHATYVHRRLLPQGRQNWEVAIMDEAHWTDPHSIAARGHLYSLAKENRCALVLM 1811 Query 316 TATPPGTSDPFPESNSPISDLQTEIPDRAWNSGYEWITEYTGKTVWFVPSVKMGNEIALC 375 TATPPG DPFPESN I + IPD W G++WITEY G+T WFVPS+ G IA Sbjct 1812 TATPPGRGDPFPESNGAIMSEERAIPDGEWREGFDWITEYEGRTAWFVPSISKGGAIART 1871 Query 376 LQRAGKKVVQLNRKSYETEYPKCKNDDWDFVITTDISEMGANFKASRVIDSRKSVKPTII 435 L++ GK V+ LN K++E +Y + + + DFV+TTDISEMGAN SRVID R ++KP Sbjct 1872 LRQRGKSVICLNSKTFEKDYLRVREEKPDFVVTTDISEMGANLDVSRVIDGRTNIKP--- 1928 Query 436 TEGEGRVILGEPSAVTAASAAQRRGRIGRNPSQVGDEYCYGGHTNEDDSNFAHWTEARIM 495 E +G+V + +T ASAAQRRGR+GR + DEY Y G ++DD++ W EA+I+ Sbjct 1929 EEVDGKVEMTGTRKITTASAAQRRGRVGRTSGRT-DEYIYSGQCDDDDTSLVQWKEAQIL 1987 Query 496 LDNINMPNGLIAQFYQPEREKVYTMDGEYRLRGEERKNFLELLRTADLPVWLAYKVAAAG 555 LDNI G +A FY PE+ K+ + G YRL E+RK+F L+ D WLA+ VA Sbjct 1988 LDNITTLRGPVATFYGPEQMKMPEVAGHYRLNEEKRKHFRHLMTQCDFTPWLAWHVATNT 2047 Query 556 VSYHDRRWCFDGPRTNTI-LEDNNEVEVITKLGERKILRPRWIDARVYSDHQALKAFKDF 614 + DR W + GP N I D + V T G ++L+P W D R++ + + +K F + Sbjct 2048 SNVLDRSWTWQGPEGNAIDGADGDLVRFKTPGGSERVLQPVWKDCRMFREGRDVKDFILY 2107 Query 615 ASGKR 619 ASG+R Sbjct 2108 ASGRR 2112 >RecName: Full=Genome polyprotein; Contains: RecName: Full=Peptide 2k; Contains: RecName: Full=Capsid protein C; AltName: Full=Core protein; Contains: RecName: Full=Protein prM; Contains: RecName: Full=Peptide pr; Contains: RecName: Full=Small envelope protein M; AltName: Full=Matrix protein; Contains: RecName: Full=Envelope protein E; Contains: RecName: Full=Non-structural protein 1; Short=NS1; Contains: RecName: Full=Non-structural protein 2A; Short=NS2A; Contains: RecName: Full=Serine protease subunit NS2B; AltName: Full=Flavivirin protease NS2B regulatory subunit; AltName: Full=Non-structural protein 2B; Contains: RecName: Full=Serine protease NS3; AltName: Full=Flavivirin protease NS3 catalytic subunit; AltName: Full=Non-structural protein 3; Contains: RecName: Full=Non-structural protein 4A; Short=NS4A; Contains: RecName: Full=Non-structural protein 4B; Short=NS4B; Contains: RecName: Full=RNA-directed RNA polymerase NS5; AltName: Full=NS5 [Tick-borne powassan virus (strain lb)] Sequence ID: Q04538.1 Length: 3415 Range 1: 1499 to 2111 Score:511 bits(1317), Expect:5e-160, Method:Compositional matrix adjust., Identities:275/619(44%), Positives:376/619(60%), Gaps:13/619(2%) Query 8 PSPKEYKKGDTTTGVYRIMTRGLLGSY-QAGAGVMVEGVFHTLWHTTKGAALMSGEGRLD 66 P E + D GVYRI GL Y Q G G +GV HT+WH T+GAAL Sbjct 1499 PDQGEKRSFDIKEGVYRIYAPGLFWGYRQIGVGYGTKGVLHTMWHVTRGAALSVEGATSG 1558 Query 67 PYWGSVKEDRLCYGGPWKLQHKWNGQDEVQMIVVEPGKNVKNVQTKPGVFKTPEGEI-GA 125 PYW V+ED +CYGG W L KW G+ VQ+ P K Q +PG G + GA Sbjct 1559 PYWADVREDVVCYGGAWGLDKKWGGE-VVQVHAFPPDSGHKIHQCQPGKLNLEGGRVLGA 1617 Query 126 VTLDFPTGTSGSPIVDKNGDVIGLYGNGVIMPNGSYISAIVQG--ERMDEPIPAGFEP-E 182 + +D P GTSGSPI++ GDV+GLYGNG + N YIS+I QG E+ +P + + Sbjct 1618 IPIDLPRGTSGSPIINAQGDVLGLYGNG-LKSNDVYISSIAQGNVEKSRPEMPLAVQGGK 1676 Query 183 MLRKKQITVLDLHPGAGKTRRILPQIIKEAINRRLRTAVLAPTRVVAAEMAEALRGLPIR 242 K ITVLD+HPG+GKT R+LP++I+E I++RLRT VLAPTRVV EM AL+G ++ Sbjct 1677 WTSKGSITVLDMHPGSGKTHRVLPELIRECIDKRLRTVVLAPTRVVLKEMERALQGKRVK 1736 Query 243 YQTSAVPREHNGN-EIVDVMCHATLTHRLMSPHRVPNYNLFVMDEAHFTDPASIAARGYI 301 + ++AV + + IVDVMCHAT +R + P N+ + +MDEAH+TDP SIAARG++ Sbjct 1737 FHSAAVDNASSSSGAIVDVMCHATYVNRRLLPQGRQNWEVAIMDEAHWTDPHSIAARGHL 1796 Query 302 STKVELGEAAAIFMTATPPGTSDPFPESNSPISDLQTEIPDRAWNSGYEWITEYTGKTVW 361 + + A + MTATPPG S+ FPES I + IP+ W G++WITE+ G+T W Sbjct 1797 YSLAKENRCALVLMTATPPGKSEAFPESKGAIVSEEKPIPEGEWRDGFDWITEFEGRTAW 1856 Query 362 FVPSVKMGNEIALCLQRAGKKVVQLNRKSYETEYPKCKNDDWDFVITTDISEMGANFKAS 421 FVPS+ G IA L++ GK V+ LN K+++ +Y + + DFV+TTDISEMGAN + Sbjct 1857 FVPSIAKGGAIARTLRQKGKSVICLNSKTFDKDYGRVHEEKPDFVVTTDISEMGANLDVN 1916 Query 422 RVIDSRKSVKPTIITEGEGRVILGEPSAVTAASAAQRRGRIGRNPSQVGDEYCYGGHTNE 481 RVID R ++KP E +G+V L VT ASAAQRRGR+GR+ + D Y Y G ++ Sbjct 1917 RVIDGRTNIKP---EEIDGKVELIGTRRVTTASAAQRRGRVGRHEGRT-DLYVYSGQCDD 1972 Query 482 DDSNFAHWTEARIMLDNINMPNGLIAQFYQPEREKVYTMDGEYRLRGEERKNFLELLRTA 541 DDS+ W EA+I+LDNI G +A FY PE+ K+ + G +RL E+RK+F LL Sbjct 1973 DDSSLVQWKEAQILLDNITTVRGPVATFYGPEQGKMLEVAGHFRLTEEKRKHFRHLLTNC 2032 Query 542 DLPVWLAYKVAAAGVSYHDRRWCFDGPRTNTILEDNNE-VEVITKLGERKILRPRWIDAR 600 D WLA+ VAA DR+W ++GP N I E V + G + L+P W D+R Sbjct 2033 DFTPWLAWHVAANTACVTDRKWTWEGPDENAIDGPGGELVTFRSPNGAERKLKPIWKDSR 2092 Query 601 VYSDHQALKAFKDFASGKR 619 ++ + + + F +ASG+R Sbjct 2093 MFREGRDVADFIQYASGRR 2111 >RecName: Full=Genome polyprotein; Contains: RecName: Full=Capsid protein C; AltName: Full=Capsid protein; AltName: Full=Core protein; Contains: RecName: Full=Protein prM; Contains: RecName: Full=Peptide pr; Contains: RecName: Full=Small envelope protein M; AltName: Full=Matrix protein; Contains: RecName: Full=Envelope protein E; Contains: RecName: Full=Non-structural protein 1; Short=NS1; Contains: RecName: Full=Non-structural protein 2A; Short=NS2A; Contains: RecName: Full=Serine protease subunit NS2B; AltName: Full=Flavivirin protease NS2B regulatory subunit; AltName: Full=Non-structural protein 2B; Contains: RecName: Full=Serine protease NS3; AltName: Full=Flavivirin protease NS3 catalytic subunit; AltName: Full=Non-structural protein 3; Contains: RecName: Full=Non-structural protein 4A; Short=NS4A; Contains: RecName: Full=Peptide 2k; Contains: RecName: Full=Non-structural protein 4B; Short=NS4B; Contains: RecName: Full=RNA-directed RNA polymerase NS5; AltName: Full=NS5 [Cell fusing agent virus] Sequence ID: P33515.1 Length: 3341 Range 1: 1472 to 2021 Score:267 bits(683), Expect:9e-76, Method:Compositional matrix adjust., Identities:203/596(34%), Positives:297/596(49%), Gaps:55/596(9%) Query 17 DTTTGVYRIMTRGLLGSYQAGAGVMVEGVFHTLWHTTKGAALMSGEGRLDPYWGSVKEDR 76 D GVYRI+ R L G Q GAG GVFHTL H T+G + + P+ GS D Sbjct 1472 DIPNGVYRIVVRSLFGDRQRGAGFSKNGVFHTLMHVTRGEPVKWRGRVVVPHSGSALRDV 1531 Query 77 LCYGGPWKLQHKWNGQDEVQMIVVEPGKNVKNVQTKPGVFKTPEGEIGAVTLDFPTGTSG 136 + YGGPW+L +D V M +P K ++ + +PGV + ++ DF G+SG Sbjct 1532 VSYGGPWQLDTPTTTEDLVLM-ACKPDKTIEYHRYRPGVMSIDGEPVMFISDDFGKGSSG 1590 Query 137 SPIVDKNGDVIGLYGNGVIMPNGSYISAIVQGERMDEPIPAGFEPEMLRKKQITVLDLHP 196 SP NG+ +G YG G + NG Y S + G+ D + + R+ + HP Sbjct 1591 SPFF-INGEPVGFYGFGFYV-NGIYRSTVAGGKPTD--VTESLNCDSTRR----FVTWHP 1642 Query 197 GAGKTRRILPQIIKEAINRRLRTAVLAPTRVVAAEMAEALRGLPIRYQTSAVPREHNGNE 256 G GKTR+++ + K+ + RT +L PTRVV AE+ EAL +R + + Sbjct 1643 GKGKTRKVIVEETKKNYDSNQRTVILTPTRVVMAEVVEALNNSGMRSDKNL---SYCTRN 1699 Query 257 IVDVMCHATLTHRLMSP-HRVPNYNLFVMDEAHFTDPASIAARGYISTKVELGEAAAIFM 315 ++ V CHAT T ++S + + +MDE HF DP SIAARG + G I++ Sbjct 1700 LITVACHATFTKFVLSHGAKKVRVAMIIMDECHFMDPMSIAARGILEHLHGQG-TKLIYL 1758 Query 316 TATPPGTSDPFPESNSPISDLQTEIPDRAWNSGYEWITEY-----TGKTVWFVPSVKMGN 370 +ATPPG + P SN ISD P W S WI KT+ FVPS N Sbjct 1759 SATPPGHA-PDTGSNYAISDQSISFP--TWLSP-AWIGNVQKSVGAKKTILFVPSHNQAN 1814 Query 371 EIALCLQRAGKKVVQLNRKSYETEYPKCKNDDWDFVITTDISEMGANFKASRVIDSRKSV 430 +A + + V L+R ++ + Y + + VI+TDISEMGAN VID+R+++ Sbjct 1815 TLASAIPGS----VPLHRANFSSNYAQAGDAATALVISTDISEMGANLGVDLVIDTRRAL 1870 Query 431 KPTIITEGEGRVILGEPSAVTAASAAQRRGRIGRNPSQVGDEYCY--GGHTNEDDSNFAH 488 +P + + RV L E + +T +S QRRGR GR Y Y T E+ ++ Sbjct 1871 RP--LVDSATRVKLVETN-ITTSSMIQRRGRTGRREP---GTYVYPIDSQTEENPVSWVC 1924 Query 489 WTEARIMLDNINMPNGL-IAQFYQPEREKVYTMDGEYRLRGEERKNFLELLRTADLPVWL 547 W EA+++LD + M L A + QP G + L GE+R FL+L+ D+P+WL Sbjct 1925 WPEAQMILDQLGMTFMLEEAAYSQPP--------GRFTLVGEDRMRFLKLMDRDDIPIWL 1976 Query 548 AYKVAAAGVSYHDRRWCFDGPRTNTILEDNNEVEVITKLGERKILRPRWIDARVYS 603 A+ A AG H F G T I+E+ + G+++ RP+++D R S Sbjct 1977 AWHWAEAGDRRHSA--LFQGAGTGKIIEN--------RFGKQE-YRPQYVDDRFES 2021 >RecName: Full=Genome polyprotein; Contains: RecName: Full=Core protein precursor; AltName: Full=Capsid protein C; AltName: Full=p23; Contains: RecName: Full=Mature core protein; AltName: Full=p21; Contains: RecName: Full=Envelope glycoprotein E1; AltName: Full=gp32; AltName: Full=gp35; Contains: RecName: Full=Envelope glycoprotein E2; AltName: Full=NS1; AltName: Full=gp68; AltName: Full=gp70; Contains: RecName: Full=Viroporin p7; Contains: RecName: Full=Protease NS2; Short=p23; AltName: Full=Non-structural protein 2; Short=NS2; Contains: RecName: Full=Serine protease/helicase NS3; AltName: Full=Hepacivirin; AltName: Full=NS3 helicase; AltName: Full=NS3 protease; AltName: Full=NS3P; AltName: Full=Viroporin p70; Contains: RecName: Full=Non-structural protein 4A; Short=NS4A; AltName: Full=p8; Contains: RecName: Full=Non-structural protein 4B; Short=NS4B; AltName: Full=p27; Contains: RecName: Full=Non-structural protein 5A; Short=NS5A; AltName: Full=p56/58; Contains: RecName: Full=RNA-directed RNA polymerase; AltName: Full=NS5B; AltName: Full=p68 [Hepatitis C virus (isolate Th580)] Sequence ID: O92529.3 Length: 3019 Range 1: 1168 to 1498 Score:57.8 bits(138), Expect:3e-07, Method:Compositional matrix adjust., Identities:85/354(24%), Positives:133/354(37%), Gaps:45/354(12%) Query 133 GTSGSPIVDKNGDVIGLYGNGVIMPNGSYISAIVQGERMDEPIPA------GFEPEMLRK 186 G+SG P++ +G V+GL+ V + + E MD + + P + + Sbjct 1168 GSSGGPLMCPSGHVVGLFRAAVCTRGVAKALDFIPVENMDTTMRSPVFTDNSSPPAVPQT 1227 Query 187 KQITVLDLHPGAGKTRRILPQIIKEAINRRLRTAVLAPTRVVAAEMAEALRGLP-----I 241 Q+ L G+GK+ R+ + + +A T A M++A P + Sbjct 1228 YQVGYLHAPTGSGKSTRVPAAYATQGYKVLVLNPSVAATLSFGAYMSKAHGIDPNIRTGV 1287 Query 242 RYQTSAVPREHN--GNEIVDVMCHATLTHRLMSPHRVPNYNLFVMDEAHFTDPASIAARG 299 R T+ P ++ G + D C Y++ + DE H TDP ++ G Sbjct 1288 RTITTGGPVTYSTYGKFLADGGCSGG------------AYDIIICDECHSTDPTTVLGIG 1335 Query 300 YISTKVEL-GEAAAIFMTATPPGT-SDPFPESNSPISDLQTEIPDRAWNSGYEWITEYTG 357 + + E G + TATPPG+ + P P EIP E+I G Sbjct 1336 TVLDQAETAGVRLTVLATATPPGSVTVPHPNITETALPTTGEIPFYGKCIPLEFIKG--G 1393 Query 358 KTVWFVPSVKMGNEIALCLQRAGKKVVQLNRKSYETEYPK------CKNDDWDFVITTDI 411 + + F S K +E++ L G V R P C D T D Sbjct 1394 RHLIFCHSKKKCDELSKQLTSLGLNAVAFYRGVDVAVIPTSGDVVVCATDALMTGYTGDF 1453 Query 412 -SEMGANFKASRVIDSRKSVKPTIITEGEGRVILGEPSAVTAASAAQRRGRIGR 464 S + N ++V+D S+ PT E A S +QRRGR GR Sbjct 1454 DSVIDCNVAVTQVVDF--SLDPTFSIETTT-------VPQDAVSRSQRRGRTGR 1498 >RecName: Full=Genome polyprotein; Contains: RecName: Full=Core protein precursor; AltName: Full=Capsid protein C; AltName: Full=p23; Contains: RecName: Full=Mature core protein; AltName: Full=p21; Contains: RecName: Full=Envelope glycoprotein E1; AltName: Full=gp32; AltName: Full=gp35; Contains: RecName: Full=Envelope glycoprotein E2; AltName: Full=NS1; AltName: Full=gp68; AltName: Full=gp70; Contains: RecName: Full=Viroporin p7; Contains: RecName: Full=Protease NS2; Short=p23; AltName: Full=Non-structural protein 2; Short=NS2; Contains: RecName: Full=Serine protease/helicase NS3; AltName: Full=Hepacivirin; AltName: Full=NS3 helicase; AltName: Full=NS3 protease; AltName: Full=NS3P; AltName: Full=Viroporin p70; Contains: RecName: Full=Non-structural protein 4A; Short=NS4A; AltName: Full=p8; Contains: RecName: Full=Non-structural protein 4B; Short=NS4B; AltName: Full=p27; Contains: RecName: Full=Non-structural protein 5A; Short=NS5A; AltName: Full=p56/58; Contains: RecName: Full=RNA-directed RNA polymerase; AltName: Full=NS5B; AltName: Full=p68 [Hepatitis C virus (isolate 6a33)] Sequence ID: Q5I2N3.3 Length: 3019 Range 1: 1168 to 1498 Score:57.0 bits(136), Expect:4e-07, Method:Compositional matrix adjust., Identities:84/354(24%), Positives:133/354(37%), Gaps:45/354(12%) Query 133 GTSGSPIVDKNGDVIGLYGNGVIMPNGSYISAIVQGERMDEPIPA------GFEPEMLRK 186 G+SG P++ +G V+GL+ V + + E M+ + + P + + Sbjct 1168 GSSGGPVMCPSGHVVGLFRAAVCTRGVAKSLDFIPVENMETTMRSPSFTDNSTPPAVPQT 1227 Query 187 KQITVLDLHPGAGKTRRILPQIIKEAINRRLRTAVLAPTRVVAAEMAEALRGLP-----I 241 Q+ L G+GK+ R+ + + +A T + M +A P + Sbjct 1228 YQVGYLHAPTGSGKSTRVPAAYASQGYKVLVLNPSVAATLSFGSYMRQAYGVEPNVRTGV 1287 Query 242 RYQTS--AVPREHNGNEIVDVMCHATLTHRLMSPHRVPNYNLFVMDEAHFTDPASIAARG 299 R T+ A+ G + D C Y++ + DE H TDP ++ G Sbjct 1288 RTVTTGGAITYSTYGKFLADGGCSGG------------AYDIIICDECHSTDPTTVLGIG 1335 Query 300 YISTKVEL-GEAAAIFMTATPPGT-SDPFPESNSPISDLQTEIPDRAWNSGYEWITEYTG 357 + + E G + TATPPG+ + P P EIP E+I G Sbjct 1336 TVLDQAETAGARLTVLATATPPGSITVPHPNITETALPTTGEIPFYGKAIPLEYIKG--G 1393 Query 358 KTVWFVPSVKMGNEIALCLQRAGKKVVQLNRKSYETEYPK------CKNDDWDFVITTDI 411 + + F S K +E+A L+ G V R + P C D T D Sbjct 1394 RHLIFCHSKKKCDELAGKLKSLGLNAVAFYRGVDVSVIPTSGDVVICATDALMTGYTGDF 1453 Query 412 -SEMGANFKASRVIDSRKSVKPTIITEGEGRVILGEPSAVTAASAAQRRGRIGR 464 S + N ++V+D S+ PT E A S +QRRGR GR Sbjct 1454 DSVIDCNVAVTQVVDF--SLDPTFSIETTT-------VPQDAVSRSQRRGRTGR 1498 >RecName: Full=Genome polyprotein; Contains: RecName: Full=Core protein precursor; AltName: Full=Capsid protein C; AltName: Full=p23; Contains: RecName: Full=Mature core protein; AltName: Full=p21; Contains: RecName: Full=Envelope glycoprotein E1; AltName: Full=gp32; AltName: Full=gp35; Contains: RecName: Full=Envelope glycoprotein E2; AltName: Full=NS1; AltName: Full=gp68; AltName: Full=gp70; Contains: RecName: Full=Viroporin p7; Contains: RecName: Full=Protease NS2; Short=p23; AltName: Full=Non-structural protein 2; Short=NS2; Contains: RecName: Full=Serine protease/helicase NS3; AltName: Full=Hepacivirin; AltName: Full=NS3 helicase; AltName: Full=NS3 protease; AltName: Full=NS3P; AltName: Full=Viroporin p70; Contains: RecName: Full=Non-structural protein 4A; Short=NS4A; AltName: Full=p8; Contains: RecName: Full=Non-structural protein 4B; Short=NS4B; AltName: Full=p27; Contains: RecName: Full=Non-structural protein 5A; Short=NS5A; AltName: Full=p56/58; Contains: RecName: Full=RNA-directed RNA polymerase; AltName: Full=NS5B; AltName: Full=p68 [Hepatitis C virus (isolate EUHK2)] Sequence ID: O39927.3 Length: 3018 Range 1: 1167 to 1497 Score:56.6 bits(135), Expect:7e-07, Method:Compositional matrix adjust., Identities:85/354(24%), Positives:133/354(37%), Gaps:45/354(12%) Query 133 GTSGSPIVDKNGDVIGLYGNGVIMPNGSYISAIVQGERMDEPIPA------GFEPEMLRK 186 G+SG PI+ +G V+GL+ V + + E M+ + + P + + Sbjct 1167 GSSGGPIMCPSGHVVGLFRAAVCTRGVAKSLDFIPVENMETTMRSPSFTDNSTPPAVPQT 1226 Query 187 KQITVLDLHPGAGKTRRILPQIIKEAINRRLRTAVLAPTRVVAAEMAEALRGLP-----I 241 Q+ L G+GK+ R+ + + +A T + M +A P + Sbjct 1227 YQVGYLHAPTGSGKSTRVPAAYASQGYKVLVLNPSVAATLSFGSYMRQAYGVEPNIRTGV 1286 Query 242 RYQTS--AVPREHNGNEIVDVMCHATLTHRLMSPHRVPNYNLFVMDEAHFTDPASIAARG 299 R T+ A+ G + D C Y++ + DE H TDP ++ G Sbjct 1287 RTVTTGGAITYSTYGEFLADGGCSGG------------AYDIIICDECHSTDPTTVLGVG 1334 Query 300 YISTKVEL-GEAAAIFMTATPPGT-SDPFPESNSPISDLQTEIPDRAWNSGYEWITEYTG 357 + + E G + TATPPG+ + P P EIP E+I G Sbjct 1335 TVLDQAETAGVRLTVLPTATPPGSVTVPHPNITETALPTTGEIPFYGKAIPLEYIKG--G 1392 Query 358 KTVWFVPSVKMGNEIALCLQRAGKKVVQLNRKSYETEYPK------CKNDDWDFVITTDI 411 + + F S K +E+A L+ G V R + P C D T D Sbjct 1393 RHLIFCHSKKKCDELAGKLKSLGLNAVAFYRGVDVSVIPTSGDVVVCATDALMTGYTGDF 1452 Query 412 -SEMGANFKASRVIDSRKSVKPTIITEGEGRVILGEPSAVTAASAAQRRGRIGR 464 S + N ++V+D S+ PT E A S +QRRGR GR Sbjct 1453 DSVIDCNVAVTQVVDF--SLDPTFSIETTT-------VPQDAVSRSQRRGRTGR 1497 >RecName: Full=Genome polyprotein; Contains: RecName: Full=Core protein; Contains: RecName: Full=Envelope glycoprotein E1; Contains: RecName: Full=Envelope glycoprotein E2; AltName: Full=NS1; Contains: RecName: Full=p13; Contains: RecName: Full=p6; Contains: RecName: Full=Viroporin p7; Contains: RecName: Full=Protease NS2; AltName: Full=Non-structural protein 2; Short=NS2; Contains: RecName: Full=Serine protease/helicase NS3; AltName: Full=Hepacivirin; AltName: Full=NS3 helicase; AltName: Full=NS3 protease; AltName: Full=NS3P; Contains: RecName: Full=Non-structural protein 4A; Short=NS4A; Contains: RecName: Full=Non-structural protein 4B; Short=NS4B; Contains: RecName: Full=Non-structural protein 5A; Short=NS5A; Contains: RecName: Full=RNA-directed RNA polymerase; AltName: Full=NS5B [GB virus-B] Sequence ID: Q69422.1 Length: 2864 Range 1: 985 to 1340 Score:47.0 bits(110), Expect:5e-04, Method:Compositional matrix adjust., Identities:87/386(23%), Positives:154/386(39%), Gaps:57/386(14%) Query 39 GVMVEGVFHTLWHTTKGAALMSGEGRLDPYWGSVKEDRLCYGGPW---KLQHKWNGQDEV 95 G + + V +T H +KG L G + P D+ Y P L G+ + Sbjct 985 GFVCDNVLYTAHHGSKGRRLAHPTGSIHPITVDAANDQDIYQPPCGAGSLTRCSCGETK- 1043 Query 96 QMIVVEPGKNVKNVQTKPGVFKTPEGEIGAVTLDFPTGTSGSPIVDKNGDVIGLYGNGVI 155 +V G V+ ++ + GA+ + G+SG+PI+ +G VIG++ Sbjct 1044 GYLVTRLGSLVEVNKSDDPYWCV----CGALPMAVAKGSSGAPILCSSGHVIGMFTAA-- 1097 Query 156 MPNGSYISAIVQGERMDEPIPAGFEPEML------------RKKQITVLDLHPGAGKTRR 203 +G +S I R+ + AG+ P+ + + +L G+GK+ + Sbjct 1098 RNSGGSVSQI----RVRPLVCAGYHPQYTAHATLDTKPTVPNEYSVQILIAPTGSGKSTK 1153 Query 204 ILPQIIKEAINRRLRTAVLAPTRVVAAEMAEALRGLPIRYQTSAVPREHNGNEIVDVMCH 263 + ++E + VL P+ A M + + + T V N N + C Sbjct 1154 LPLSYMQE----KYEVLVLNPSVATTASMPKYM------HATYGV----NPNCYFNGKCT 1199 Query 264 ---ATLTHRLMSPHRVP----NYNLFVMDEAHFTDPASIAARGYISTKVELGEA-AAIFM 315 A+LT+ + NY++ + DE H TD ++ G + T+ + Sbjct 1200 NTGASLTYSTYGMYLTGACSRNYDVIICDECHATDATTVLGIGKVLTEAPSKNVRLVVLA 1259 Query 316 TATPPGTSDPFPESNSPISDLQT----EIPDRAWNSGYEWITEYTGKTVWFVPSVKMGNE 371 TATPPG P P +N I+++Q IP E + + G+ + F + K +E Sbjct 1260 TATPPGVI-PTPHAN--ITEIQLTDEGTIPFHGKKIKEENLKK--GRHLIFEATKKHCDE 1314 Query 372 IALCLQRAGKKVVQLNRKSYETEYPK 397 +A L R G V R ++ P+ Sbjct 1315 LANELARKGITAVSYYRGCDISKIPE 1340