RID: 6B83R6EN013 Job Title:Helicase P0C6X1 (3.6.4.12; 3.6.4.13) Program: BLASTP Query: Helicase P0C6X1 (3.6.4.12; 3.6.4.13) ID: lcl|Query_40283(amino acid) Length: 597 Database: swissprot Non-redundant UniProtKB/SwissProt sequences Sequences producing significant alignments: Scientific Common Max Total Query E Per. Acc. Description Name Name Taxid Score Score cover Value Ident Len Accession RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName:... Human corona... NA 11137 1242 1242 100% 0.0 100.00 6758 P0C6X1.1 RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName:... Human corona... NA 277944 1122 1122 100% 0.0 86.77 6729 P0C6X5.1 RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName:... Porcine epid... NA 229032 1043 1043 100% 0.0 81.24 6781 P0C6Y4.1 RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName:... Scotophilus ... NA 693999 1021 1021 100% 0.0 78.39 6793 P0C6W0.1 RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName:... Feline infec... NA 33734 977 977 98% 0.0 75.30 6709 Q98VG9.2 RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName:... Porcine tran... NA 11151 975 975 98% 0.0 75.13 6684 P0C6Y5.1 RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName:... Pipistrellus... NA 694008 798 798 100% 0.0 62.81 7182 P0C6W4.1 RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName:... Bat coronavi... NA 389230 795 795 100% 0.0 62.81 7126 P0C6W1.1 RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName:... Tylonycteris... NA 694007 788 788 100% 0.0 62.31 7119 P0C6W3.1 RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName:... Betacoronavi... NA 1263720 787 787 100% 0.0 61.98 7078 K9N7C7.1 RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName:... Rousettus ba... NA 694006 775 775 99% 0.0 60.67 6930 P0C6W5.1 RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName:... Bat SARS CoV... NA 349344 765 765 98% 0.0 60.88 7071 P0C6W6.1 RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName:... Bat CoV 279/... NA 389167 764 764 98% 0.0 60.88 7079 P0C6V9.1 RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName:... Severe acute... NA 2697049 764 764 98% 0.0 60.71 7096 P0DTD1.1 RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName:... Severe acute... NA 694009 763 763 98% 0.0 60.71 7073 P0C6X7.1 RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName:... Bat SARS cor... NA 442736 763 763 98% 0.0 60.71 7067 P0C6W2.1 RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName:... Bovine respi... NA 233264 735 735 99% 0.0 58.68 7094 P0C6W8.1 RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName:... Bovine enter... NA 233262 735 735 99% 0.0 58.68 7094 P0C6W7.1 RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName:... Bovine coron... NA 11133 734 734 99% 0.0 58.68 7059 P0C6X0.1 RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName:... Bovine coron... NA 11132 734 734 99% 0.0 58.68 7094 P0C6W9.1 RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName:... Human corona... NA 31631 733 733 99% 0.0 58.52 7095 P0C6X6.1 RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName:... Murine hepat... NA 76344 726 726 99% 0.0 57.34 7124 P0C6X8.1 RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName:... Murine hepat... NA 11142 725 725 99% 0.0 57.17 7176 P0C6X9.1 RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName:... Human corona... NA 443241 719 719 100% 0.0 56.78 7132 P0C6X4.1 RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName:... Human corona... NA 443239 718 718 100% 0.0 56.78 7182 P0C6X2.1 RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName:... Human corona... NA 443240 716 716 100% 0.0 56.45 7152 P0C6X3.1 RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName:... Murine hepat... NA 11144 702 702 99% 0.0 55.65 7180 P0C6Y0.1 RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName:... Avian infect... NA 11122 698 698 100% 0.0 55.81 6629 P0C6Y1.1 RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName:... Avian infect... NA 160235 698 698 100% 0.0 55.81 6629 P0C6Y2.1 RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName:... Avian infect... NA 11127 696 696 98% 0.0 55.80 6631 P0C6Y3.1 RecName: Full=Protein ZGRF1; AltName: Full=GRF-type zinc finge... Mus musculus house mouse 10090 58.2 58.2 34% 2e-07 27.00 1863 Q0VGT4.2 RecName: Full=Protein ZGRF1; AltName: Full=GRF-type zinc finge... Homo sapiens human 9606 57.4 57.4 34% 4e-07 25.53 2104 Q86YA3.3 RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName:... Breda virus ... NA 360393 51.2 51.2 30% 3e-05 25.93 6733 P0C6V8.1 RecName: Full=NFX1-type zinc finger-containing protein 1 [Homo... Homo sapiens human 9606 49.3 49.3 35% 1e-04 23.17 1918 Q9P2E3.2 RecName: Full=Regulator of nonsense transcripts 1 homolog... Neurospora c... NA 367110 47.8 47.8 64% 2e-04 20.25 1093 Q9HEH1.1 RecName: Full=Probable RNA helicase SDE3; AltName:... Arabidopsis ... thale cress 3702 47.4 47.4 48% 3e-04 22.75 1002 Q8GYD9.1 RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName:... Berne virus NA 11156 47.4 47.4 30% 4e-04 25.93 6857 P0C6V7.1 RecName: Full=NFX1-type zinc finger-containing protein 1 [Mus... Mus musculus house mouse 10090 46.2 46.2 35% 8e-04 22.36 1909 Q8R151.3 RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName:... White bream ... NA 766180 45.4 45.4 13% 0.001 29.76 6872 Q008X6.1 Alignments: >RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Non-structural protein 1; Short=nsp1; AltName: Full=p9; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p87; Contains: RecName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=PL1-PRO/PL2-PRO; AltName: Full=PLP1/PLP2; AltName: Full=Papain-like proteinases 1/2; AltName: Full=p195; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; AltName: Full=Peptide HD2; Contains: RecName: Full=3C-like proteinase; Short=3CL-PRO; Short=3CLp; AltName: Full=M-PRO; AltName: Full=nsp5; AltName: Full=p34; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; AltName: Full=p5; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; AltName: Full=p23; Contains: RecName: Full=Non-structural protein 9; Short=nsp9; AltName: Full=p12; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; AltName: Full=p16; Contains: RecName: Full=RNA-directed RNA polymerase; Short=Pol; Short=RdRp; AltName: Full=nsp12; AltName: Full=p100; Contains: RecName: Full=Helicase; Short=Hel; AltName: Full=nsp13; AltName: Full=p66; AltName: Full=p66-HEL; Contains: RecName: Full=Exoribonuclease; Short=ExoN; AltName: Full=nsp14; Contains: RecName: Full=Uridylate-specific endoribonuclease; AltName: Full=NendoU; AltName: Full=nsp15; AltName: Full=p41; Contains: RecName: Full=Putative 2'-O-methyl transferase; AltName: Full=nsp16 [Human coronavirus 229E] Sequence ID: P0C6X1.1 Length: 6758 Range 1: 4996 to 5592 Score:1242 bits(3214), Expect:0.0, Method:Compositional matrix adjust., Identities:597/597(100%), Positives:597/597(100%), Gaps:0/597(0%) Query 1 AAGLCVVCGSQTVLRCGDCLRRPMLCTKCAYDHVFGTDHKFILAITPYVCNTSGCNVNDV 60 AAGLCVVCGSQTVLRCGDCLRRPMLCTKCAYDHVFGTDHKFILAITPYVCNTSGCNVNDV Sbjct 4996 AAGLCVVCGSQTVLRCGDCLRRPMLCTKCAYDHVFGTDHKFILAITPYVCNTSGCNVNDV 5055 Query 61 TKLYLGGLNYYCVDHKPHLSFPLCSAGNVFGLYKSSALGSMDIDVFNKLSTSDWSDIRDY 120 TKLYLGGLNYYCVDHKPHLSFPLCSAGNVFGLYKSSALGSMDIDVFNKLSTSDWSDIRDY Sbjct 5056 TKLYLGGLNYYCVDHKPHLSFPLCSAGNVFGLYKSSALGSMDIDVFNKLSTSDWSDIRDY 5115 Query 121 KLANDAKESLRLFAAETVKAKEESVKSSYAYATLKEIVGPKELLLLWESGKAKPPLNRNS 180 KLANDAKESLRLFAAETVKAKEESVKSSYAYATLKEIVGPKELLLLWESGKAKPPLNRNS Sbjct 5116 KLANDAKESLRLFAAETVKAKEESVKSSYAYATLKEIVGPKELLLLWESGKAKPPLNRNS 5175 Query 181 VFTCFQITKDSKFQVGEFVFEKVDYGSDTVTYKSTATTKLVPGMLFILTSHNVAPLRAPT 240 VFTCFQITKDSKFQVGEFVFEKVDYGSDTVTYKSTATTKLVPGMLFILTSHNVAPLRAPT Sbjct 5176 VFTCFQITKDSKFQVGEFVFEKVDYGSDTVTYKSTATTKLVPGMLFILTSHNVAPLRAPT 5235 Query 241 MANQEKYSTIYKLHPSFNVSDAYANLVPYYQLIGKQRITTIQGPPGSGKSHCSIGIGVYY 300 MANQEKYSTIYKLHPSFNVSDAYANLVPYYQLIGKQRITTIQGPPGSGKSHCSIGIGVYY Sbjct 5236 MANQEKYSTIYKLHPSFNVSDAYANLVPYYQLIGKQRITTIQGPPGSGKSHCSIGIGVYY 5295 Query 301 PGARIVFTACSHAAVDSLCAKAVTAYSVDKCTRIIPARARVECYSGFKPNNNSAQYVFST 360 PGARIVFTACSHAAVDSLCAKAVTAYSVDKCTRIIPARARVECYSGFKPNNNSAQYVFST Sbjct 5296 PGARIVFTACSHAAVDSLCAKAVTAYSVDKCTRIIPARARVECYSGFKPNNNSAQYVFST 5355 Query 361 VNALPEVNADIVVVDEVSMCTNYDLSVINQRISYKHIVYVGDPQQLPAPRVLISKGVMEP 420 VNALPEVNADIVVVDEVSMCTNYDLSVINQRISYKHIVYVGDPQQLPAPRVLISKGVMEP Sbjct 5356 VNALPEVNADIVVVDEVSMCTNYDLSVINQRISYKHIVYVGDPQQLPAPRVLISKGVMEP 5415 Query 421 IDYNVVTQRMCAIGPDVFLHKCYRCPAEIVNTVSELVYENKFVPVKEASKQCFKIFERGS 480 IDYNVVTQRMCAIGPDVFLHKCYRCPAEIVNTVSELVYENKFVPVKEASKQCFKIFERGS Sbjct 5416 IDYNVVTQRMCAIGPDVFLHKCYRCPAEIVNTVSELVYENKFVPVKEASKQCFKIFERGS 5475 Query 481 VQVDNGSSINRRQLDVVKRFIHKNSTWSKAVFISPYNSQNYVAARLLGLQTQTVDSAQGS 540 VQVDNGSSINRRQLDVVKRFIHKNSTWSKAVFISPYNSQNYVAARLLGLQTQTVDSAQGS Sbjct 5476 VQVDNGSSINRRQLDVVKRFIHKNSTWSKAVFISPYNSQNYVAARLLGLQTQTVDSAQGS 5535 Query 541 EYDYVIFAQTSDTAHACNANRFNVAITRAKKGIFCIMSDRTLFDALKFFEITMTDLQ 597 EYDYVIFAQTSDTAHACNANRFNVAITRAKKGIFCIMSDRTLFDALKFFEITMTDLQ Sbjct 5536 EYDYVIFAQTSDTAHACNANRFNVAITRAKKGIFCIMSDRTLFDALKFFEITMTDLQ 5592 >RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Non-structural protein 1; Short=nsp1; AltName: Full=p9; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p87; Contains: RecName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=PL1-PRO/PL2-PRO; AltName: Full=PLP1/PLP2; AltName: Full=Papain-like proteinases 1/2; AltName: Full=p195; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; AltName: Full=Peptide HD2; Contains: RecName: Full=3C-like proteinase; Short=3CL-PRO; Short=3CLp; AltName: Full=M-PRO; AltName: Full=nsp5; AltName: Full=p34; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; AltName: Full=p5; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; AltName: Full=p23; Contains: RecName: Full=Non-structural protein 9; Short=nsp9; AltName: Full=p12; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; AltName: Full=p14; Contains: RecName: Full=RNA-directed RNA polymerase; Short=Pol; Short=RdRp; AltName: Full=nsp12; AltName: Full=p100; Contains: RecName: Full=Helicase; Short=Hel; AltName: Full=nsp13; AltName: Full=p66; AltName: Full=p66-HEL; Contains: RecName: Full=Exoribonuclease; Short=ExoN; AltName: Full=nsp14; Contains: RecName: Full=Uridylate-specific endoribonuclease; AltName: Full=NendoU; AltName: Full=nsp15; AltName: Full=p41; Contains: RecName: Full=Putative 2'-O-methyl transferase; AltName: Full=nsp16 [Human coronavirus NL63] Sequence ID: P0C6X5.1 Length: 6729 Range 1: 4971 to 5567 Score:1122 bits(2902), Expect:0.0, Method:Compositional matrix adjust., Identities:518/597(87%), Positives:569/597(95%), Gaps:0/597(0%) Query 1 AAGLCVVCGSQTVLRCGDCLRRPMLCTKCAYDHVFGTDHKFILAITPYVCNTSGCNVNDV 60 AAGLCVVCGSQTVLRCGDCLR+PMLCTKCAYDHVFGTDHKFILAITPYVCN SGC V+DV Sbjct 4971 AAGLCVVCGSQTVLRCGDCLRKPMLCTKCAYDHVFGTDHKFILAITPYVCNASGCGVSDV 5030 Query 61 TKLYLGGLNYYCVDHKPHLSFPLCSAGNVFGLYKSSALGSMDIDVFNKLSTSDWSDIRDY 120 KLYLGGLNYYC +HKP LSFPLCSAGN+FGLYK+SA GS+D++VFN+L+TSDW+D+RDY Sbjct 5031 KKLYLGGLNYYCTNHKPQLSFPLCSAGNIFGLYKNSATGSLDVEVFNRLATSDWTDVRDY 5090 Query 121 KLANDAKESLRLFAAETVKAKEESVKSSYAYATLKEIVGPKELLLLWESGKAKPPLNRNS 180 KLAND K++LRLFAAET+KAKEESVKSSYA+ATLKE+VGPKELLL WESGK KPPLNRNS Sbjct 5091 KLANDVKDTLRLFAAETIKAKEESVKSSYAFATLKEVVGPKELLLSWESGKVKPPLNRNS 5150 Query 181 VFTCFQITKDSKFQVGEFVFEKVDYGSDTVTYKSTATTKLVPGMLFILTSHNVAPLRAPT 240 VFTCFQI+KDSKFQ+GEF+FEKV+YGSDTVTYKST TTKLVPGM+F+LTSHNV PLRAPT Sbjct 5151 VFTCFQISKDSKFQIGEFIFEKVEYGSDTVTYKSTVTTKLVPGMIFVLTSHNVQPLRAPT 5210 Query 241 MANQEKYSTIYKLHPSFNVSDAYANLVPYYQLIGKQRITTIQGPPGSGKSHCSIGIGVYY 300 +ANQEKYS+IYKLHP+FNVSDAYANLVPYYQLIGKQ+ITTIQGPPGSGKSHCSIG+G+YY Sbjct 5211 IANQEKYSSIYKLHPAFNVSDAYANLVPYYQLIGKQKITTIQGPPGSGKSHCSIGLGLYY 5270 Query 301 PGARIVFTACSHAAVDSLCAKAVTAYSVDKCTRIIPARARVECYSGFKPNNNSAQYVFST 360 PGARIVF AC+HAAVDSLCAKA+T YS+DKCTRIIPARARVECYSGFKPNN SAQY+FST Sbjct 5271 PGARIVFVACAHAAVDSLCAKAMTVYSIDKCTRIIPARARVECYSGFKPNNTSAQYIFST 5330 Query 361 VNALPEVNADIVVVDEVSMCTNYDLSVINQRISYKHIVYVGDPQQLPAPRVLISKGVMEP 420 VNALPE NADIVVVDEVSMCTNYDLSVINQR+SYKHIVYVGDPQQLPAPRV+I+KGVMEP Sbjct 5331 VNALPECNADIVVVDEVSMCTNYDLSVINQRLSYKHIVYVGDPQQLPAPRVMITKGVMEP 5390 Query 421 IDYNVVTQRMCAIGPDVFLHKCYRCPAEIVNTVSELVYENKFVPVKEASKQCFKIFERGS 480 +DYNVVTQRMCAIGPDVFLHKCYRCPAEIVNTVSELVYENKFVPVK ASKQCFK+F +G+ Sbjct 5391 VDYNVVTQRMCAIGPDVFLHKCYRCPAEIVNTVSELVYENKFVPVKPASKQCFKVFFKGN 5450 Query 481 VQVDNGSSINRRQLDVVKRFIHKNSTWSKAVFISPYNSQNYVAARLLGLQTQTVDSAQGS 540 VQVDNGSSINR+QL++VK F+ KN +WSKAVFISPYNSQNYVA+R LGLQ QTVDS+QGS Sbjct 5451 VQVDNGSSINRKQLEIVKLFLVKNPSWSKAVFISPYNSQNYVASRFLGLQIQTVDSSQGS 5510 Query 541 EYDYVIFAQTSDTAHACNANRFNVAITRAKKGIFCIMSDRTLFDALKFFEITMTDLQ 597 EYDYVI+AQTSDTAHACN NRFNVAITRAKKGIFC+M D+TLFD+LKFFEI DL Sbjct 5511 EYDYVIYAQTSDTAHACNVNRFNVAITRAKKGIFCVMCDKTLFDSLKFFEIKHADLH 5567 >RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Non-structural protein 1; Short=nsp1; AltName: Full=p9; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p87; Contains: RecName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=PL1-PRO/PL2-PRO; AltName: Full=PLP1/PLP2; AltName: Full=Papain-like proteinases 1/2; AltName: Full=p195; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; AltName: Full=Peptide HD2; Contains: RecName: Full=3C-like proteinase; Short=3CL-PRO; Short=3CLp; AltName: Full=M-PRO; AltName: Full=nsp5; AltName: Full=p34; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; AltName: Full=p5; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; AltName: Full=p23; Contains: RecName: Full=Non-structural protein 9; Short=nsp9; AltName: Full=p12; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; AltName: Full=p14; Contains: RecName: Full=RNA-directed RNA polymerase; Short=Pol; Short=RdRp; AltName: Full=nsp12; AltName: Full=p100; Contains: RecName: Full=Helicase; Short=Hel; AltName: Full=nsp13; AltName: Full=p66; AltName: Full=p66-HEL; Contains: RecName: Full=Exoribonuclease; Short=ExoN; AltName: Full=nsp14; Contains: RecName: Full=Uridylate-specific endoribonuclease; AltName: Full=NendoU; AltName: Full=nsp15; Contains: RecName: Full=Putative 2'-O-methyl transferase; AltName: Full=nsp16 [Porcine epidemic diarrhea virus CV777] Sequence ID: P0C6Y4.1 Length: 6781 Range 1: 5028 to 5624 Score:1043 bits(2698), Expect:0.0, Method:Compositional matrix adjust., Identities:485/597(81%), Positives:545/597(91%), Gaps:0/597(0%) Query 1 AAGLCVVCGSQTVLRCGDCLRRPMLCTKCAYDHVFGTDHKFILAITPYVCNTSGCNVNDV 60 +AGLCVVCGSQTVLRCGDCLRRPMLCTKCAYDHV GT HKFILAITPYVC S C VNDV Sbjct 5028 SAGLCVVCGSQTVLRCGDCLRRPMLCTKCAYDHVIGTTHKFILAITPYVCCASDCGVNDV 5087 Query 61 TKLYLGGLNYYCVDHKPHLSFPLCSAGNVFGLYKSSALGSMDIDVFNKLSTSDWSDIRDY 120 TKLYLGGL+Y+C +HKP L+FPLCSAGNVFGLYK+SA GS D++ FN+++TSDW+D+ DY Sbjct 5088 TKLYLGGLSYWCHEHKPRLAFPLCSAGNVFGLYKNSATGSPDVEDFNRIATSDWTDVSDY 5147 Query 121 KLANDAKESLRLFAAETVKAKEESVKSSYAYATLKEIVGPKELLLLWESGKAKPPLNRNS 180 +LAND K+SLRLFAAET+KAKEESVKSSYA ATL E+VGPKELLL WE G+ KPPLNRNS Sbjct 5148 RLANDVKDSLRLFAAETIKAKEESVKSSYACATLHEVVGPKELLLKWEVGRPKPPLNRNS 5207 Query 181 VFTCFQITKDSKFQVGEFVFEKVDYGSDTVTYKSTATTKLVPGMLFILTSHNVAPLRAPT 240 VFTC+ ITK++KFQ+GEFVFEK +Y +D VTYK+TATTKLVPGM+F+LTSHNV PLRAPT Sbjct 5208 VFTCYHITKNTKFQIGEFVFEKAEYDNDAVTYKTTATTKLVPGMVFVLTSHNVQPLRAPT 5267 Query 241 MANQEKYSTIYKLHPSFNVSDAYANLVPYYQLIGKQRITTIQGPPGSGKSHCSIGIGVYY 300 +ANQE+YSTI+KLHP+FN+ +AY++LVPYYQLIGKQ+ITTIQGPPGSGKSHC IG+G+YY Sbjct 5268 IANQERYSTIHKLHPAFNIPEAYSSLVPYYQLIGKQKITTIQGPPGSGKSHCVIGLGLYY 5327 Query 301 PGARIVFTACSHAAVDSLCAKAVTAYSVDKCTRIIPARARVECYSGFKPNNNSAQYVFST 360 PGARIVFTACSHAAVDSLC KA TAYS DKC+RIIP RARVECY GFK NN SAQY+FST Sbjct 5328 PGARIVFTACSHAAVDSLCVKASTAYSNDKCSRIIPQRARVECYDGFKSNNTSAQYLFST 5387 Query 361 VNALPEVNADIVVVDEVSMCTNYDLSVINQRISYKHIVYVGDPQQLPAPRVLISKGVMEP 420 VNALPE NADIVVVDEVSMCTNYDLSVINQRISY+H+VYVGDPQQLPAPRV+IS+G +EP Sbjct 5388 VNALPECNADIVVVDEVSMCTNYDLSVINQRISYRHVVYVGDPQQLPAPRVMISRGTLEP 5447 Query 421 IDYNVVTQRMCAIGPDVFLHKCYRCPAEIVNTVSELVYENKFVPVKEASKQCFKIFERGS 480 DYNVVTQRMCA+ PDVFLHKCYRCPAEIV TVSE+VYEN+F+PV SKQCFKIF +G+ Sbjct 5448 KDYNVVTQRMCALKPDVFLHKCYRCPAEIVRTVSEMVYENQFIPVHPDSKQCFKIFCKGN 5507 Query 481 VQVDNGSSINRRQLDVVKRFIHKNSTWSKAVFISPYNSQNYVAARLLGLQTQTVDSAQGS 540 VQVDNGSSINRRQLDVV+ F+ KN WSKAVFISPYNSQNYVA+RLLGLQ QTVDS+QGS Sbjct 5508 VQVDNGSSINRRQLDVVRMFLAKNPRWSKAVFISPYNSQNYVASRLLGLQIQTVDSSQGS 5567 Query 541 EYDYVIFAQTSDTAHACNANRFNVAITRAKKGIFCIMSDRTLFDALKFFEITMTDLQ 597 EYDYVI+AQTSDTAHA N NRFNVAITRAKKGI CIM DR+LFD LKFFE+ ++DLQ Sbjct 5568 EYDYVIYAQTSDTAHASNVNRFNVAITRAKKGILCIMCDRSLFDLLKFFELKLSDLQ 5624 >RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Non-structural protein 1; Short=nsp1; AltName: Full=p9; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p87; Contains: RecName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=PL1-PRO/PL2-PRO; AltName: Full=PLP1/PLP2; AltName: Full=Papain-like proteinases 1/2; AltName: Full=p195; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; AltName: Full=Peptide HD2; Contains: RecName: Full=3C-like proteinase; Short=3CL-PRO; Short=3CLp; AltName: Full=M-PRO; AltName: Full=nsp5; AltName: Full=p34; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; AltName: Full=p5; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; AltName: Full=p23; Contains: RecName: Full=Non-structural protein 9; Short=nsp9; AltName: Full=p12; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; AltName: Full=p14; Contains: RecName: Full=RNA-directed RNA polymerase; Short=Pol; Short=RdRp; AltName: Full=nsp12; AltName: Full=p100; Contains: RecName: Full=Helicase; Short=Hel; AltName: Full=nsp13; AltName: Full=p66; AltName: Full=p66-HEL; Contains: RecName: Full=Exoribonuclease; Short=ExoN; AltName: Full=nsp14; Contains: RecName: Full=Uridylate-specific endoribonuclease; AltName: Full=NendoU; AltName: Full=nsp15; Contains: RecName: Full=Putative 2'-O-methyl transferase; AltName: Full=nsp16 [Scotophilus bat coronavirus 512] Sequence ID: P0C6W0.1 Length: 6793 Range 1: 5039 to 5635 Score:1021 bits(2641), Expect:0.0, Method:Compositional matrix adjust., Identities:468/597(78%), Positives:541/597(90%), Gaps:0/597(0%) Query 1 AAGLCVVCGSQTVLRCGDCLRRPMLCTKCAYDHVFGTDHKFILAITPYVCNTSGCNVNDV 60 +AGLCVVC SQTVLRCGDC+RRPMLCTKCAYDHV T HKFILAITPYVC +SGC V+DV Sbjct 5039 SAGLCVVCSSQTVLRCGDCIRRPMLCTKCAYDHVVSTSHKFILAITPYVCCSSGCGVSDV 5098 Query 61 TKLYLGGLNYYCVDHKPHLSFPLCSAGNVFGLYKSSALGSMDIDVFNKLSTSDWSDIRDY 120 TKLYLGGL+Y+CVDHKP LSFPLCS+GNVFGLYK+SA GS D+D FN L+TSDW+D++DY Sbjct 5099 TKLYLGGLSYWCVDHKPRLSFPLCSSGNVFGLYKNSATGSPDVDDFNTLATSDWTDVKDY 5158 Query 121 KLANDAKESLRLFAAETVKAKEESVKSSYAYATLKEIVGPKELLLLWESGKAKPPLNRNS 180 KLAND K+SLRLFAAET+KAKEESVKSSYA AT+ E+VGPKEL+L WE GK +PPL+RNS Sbjct 5159 KLANDVKDSLRLFAAETIKAKEESVKSSYACATIHEVVGPKELVLKWEVGKPRPPLSRNS 5218 Query 181 VFTCFQITKDSKFQVGEFVFEKVDYGSDTVTYKSTATTKLVPGMLFILTSHNVAPLRAPT 240 VFTC+ ITK++KFQVGEF FEK+DY +D V+YKSTATTKLVPGM+F+LTSHNV PLRAPT Sbjct 5219 VFTCYHITKNTKFQVGEFTFEKLDYDNDAVSYKSTATTKLVPGMVFVLTSHNVQPLRAPT 5278 Query 241 MANQEKYSTIYKLHPSFNVSDAYANLVPYYQLIGKQRITTIQGPPGSGKSHCSIGIGVYY 300 + NQE+YST++KL P+FN+ + Y+NL+PYYQLIGKQ++TTIQGPPGSGKSHC IG+G+Y+ Sbjct 5279 IINQERYSTLHKLRPAFNIHEDYSNLIPYYQLIGKQKLTTIQGPPGSGKSHCVIGLGLYF 5338 Query 301 PGARIVFTACSHAAVDSLCAKAVTAYSVDKCTRIIPARARVECYSGFKPNNNSAQYVFST 360 PGARIVFTACSHAAVDSLC KA TAYS D+C+RIIP +AR+ECY GFK NN SAQY+FST Sbjct 5339 PGARIVFTACSHAAVDSLCVKAATAYSSDRCSRIIPQKARIECYDGFKSNNTSAQYLFST 5398 Query 361 VNALPEVNADIVVVDEVSMCTNYDLSVINQRISYKHIVYVGDPQQLPAPRVLISKGVMEP 420 VNALPEVNADI VVDEVSMCTNYDLSVINQR++Y+HIVYVGDPQQLPAPRV+I++GV+ P Sbjct 5399 VNALPEVNADICVVDEVSMCTNYDLSVINQRVNYRHIVYVGDPQQLPAPRVMITRGVLVP 5458 Query 421 IDYNVVTQRMCAIGPDVFLHKCYRCPAEIVNTVSELVYENKFVPVKEASKQCFKIFERGS 480 DYNVVT+RMC + PD+FLHKCYRCPAEIVNTVSE+VYEN+FVPVK SK+CFKI+ RG+ Sbjct 5459 EDYNVVTRRMCVLKPDIFLHKCYRCPAEIVNTVSEMVYENQFVPVKSESKECFKIYCRGN 5518 Query 481 VQVDNGSSINRRQLDVVKRFIHKNSTWSKAVFISPYNSQNYVAARLLGLQTQTVDSAQGS 540 VQVDNGSSINRRQL+VV+ F+ KN W+KAVFISPYNSQNYVA R+LGLQ QTVDS+QGS Sbjct 5519 VQVDNGSSINRRQLEVVRMFLAKNPKWAKAVFISPYNSQNYVAGRVLGLQIQTVDSSQGS 5578 Query 541 EYDYVIFAQTSDTAHACNANRFNVAITRAKKGIFCIMSDRTLFDALKFFEITMTDLQ 597 EYDYVI+ QTSDTAHA N NRFNVAITRAKKGI CIM DR LFD LKF+E+ ++DLQ Sbjct 5579 EYDYVIYTQTSDTAHASNVNRFNVAITRAKKGILCIMCDRELFDILKFYELKLSDLQ 5635 >RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Non-structural protein 1; Short=nsp1; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; Contains: RecName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=PL1-PRO/PL2-PRO; AltName: Full=PLP1/PLP2; AltName: Full=Papain-like proteinases 1/2; AltName: Full=p195; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; AltName: Full=Peptide HD2; Contains: RecName: Full=3C-like proteinase; Short=3CL-PRO; Short=3CLp; AltName: Full=M-PRO; AltName: Full=nsp5; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; Contains: RecName: Full=Non-structural protein 9; Short=nsp9; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; Contains: RecName: Full=Non-structural protein 11; Short=nsp11; Contains: RecName: Full=RNA-directed RNA polymerase; Short=Pol; Short=RdRp; AltName: Full=nsp12; Contains: RecName: Full=Helicase; Short=Hel; AltName: Full=nsp13; Contains: RecName: Full=Exoribonuclease; Short=ExoN; AltName: Full=nsp14; Contains: RecName: Full=Uridylate-specific endoribonuclease; AltName: Full=NendoU; AltName: Full=nsp15; Contains: RecName: Full=Putative 2'-O-methyl transferase; AltName: Full=nsp16 [Feline infectious peritonitis virus (strain 79-1146)] Sequence ID: Q98VG9.2 Length: 6709 Range 1: 4953 to 5543 Score:977 bits(2525), Expect:0.0, Method:Compositional matrix adjust., Identities:445/591(75%), Positives:522/591(88%), Gaps:0/591(0%) Query 1 AAGLCVVCGSQTVLRCGDCLRRPMLCTKCAYDHVFGTDHKFILAITPYVCNTSGCNVNDV 60 AAG+CVVCGSQTVLRCGDCLRRP+LCTKCAYDHV GT HKFI++ITPYVC+ +GCNVNDV Sbjct 4953 AAGMCVVCGSQTVLRCGDCLRRPLLCTKCAYDHVMGTKHKFIMSITPYVCSFNGCNVNDV 5012 Query 61 TKLYLGGLNYYCVDHKPHLSFPLCSAGNVFGLYKSSALGSMDIDVFNKLSTSDWSDIRDY 120 TKL+LGGL+YYC+DHKP LSFPLC+ GNVFGLYKSSA+GS D++ FNKL+ SDW+++ DY Sbjct 5013 TKLFLGGLSYYCMDHKPQLSFPLCANGNVFGLYKSSAVGSEDVEDFNKLAVSDWTNVEDY 5072 Query 121 KLANDAKESLRLFAAETVKAKEESVKSSYAYATLKEIVGPKELLLLWESGKAKPPLNRNS 180 KLAN+ KESL++FAAETVKAKEESVKS YAYA LKE++GPKE++L WE+ K KPPLNRNS Sbjct 5073 KLANNVKESLKIFAAETVKAKEESVKSEYAYAILKEVIGPKEIVLQWEASKTKPPLNRNS 5132 Query 181 VFTCFQITKDSKFQVGEFVFEKVDYGSDTVTYKSTATTKLVPGMLFILTSHNVAPLRAPT 240 VFTCFQI+KD+K Q+GEFVFE+ +YGSD+V YKST+T KL PGM+F+LTSHNV+PL+A Sbjct 5133 VFTCFQISKDTKIQLGEFVFEQSEYGSDSVYYKSTSTYKLTPGMIFVLTSHNVSPLKATI 5192 Query 241 MANQEKYSTIYKLHPSFNVSDAYANLVPYYQLIGKQRITTIQGPPGSGKSHCSIGIGVYY 300 + NQEKY+TI KL+P FN+++AY LVPYYQ+IGKQ+ TTIQGPPGSGKSHC IG+G+YY Sbjct 5193 LVNQEKYNTISKLYPVFNIAEAYNTLVPYYQMIGKQKFTTIQGPPGSGKSHCVIGLGLYY 5252 Query 301 PGARIVFTACSHAAVDSLCAKAVTAYSVDKCTRIIPARARVECYSGFKPNNNSAQYVFST 360 P ARIV+TACSHAAVD+LC KA ++VD+C+RIIP R RV+CY+GFKPNN +AQY+F T Sbjct 5253 PQARIVYTACSHAAVDALCEKAAKNFNVDRCSRIIPQRIRVDCYTGFKPNNTNAQYLFCT 5312 Query 361 VNALPEVNADIVVVDEVSMCTNYDLSVINQRISYKHIVYVGDPQQLPAPRVLISKGVMEP 420 VNALPE + DIVVVDEVSMCTNYDLSVIN R+SYKHIVYVGDPQQLPAPR LI+KGV++P Sbjct 5313 VNALPEASCDIVVVDEVSMCTNYDLSVINSRLSYKHIVYVGDPQQLPAPRTLINKGVLQP 5372 Query 421 IDYNVVTQRMCAIGPDVFLHKCYRCPAEIVNTVSELVYENKFVPVKEASKQCFKIFERGS 480 DYNVVTQR+C +GPDVFLHKCYRCPAEIV TVS LVYENKFVPV SKQCFK+F +G Sbjct 5373 QDYNVVTQRVCTLGPDVFLHKCYRCPAEIVKTVSALVYENKFVPVNPESKQCFKMFVKGQ 5432 Query 481 VQVDNGSSINRRQLDVVKRFIHKNSTWSKAVFISPYNSQNYVAARLLGLQTQTVDSAQGS 540 VQ+++ SSIN +QL+VVK F+ N W KAVFISPYNSQNYVA RLLGLQTQTVDSAQGS Sbjct 5433 VQIESNSSINNKQLEVVKAFLAHNPKWRKAVFISPYNSQNYVARRLLGLQTQTVDSAQGS 5492 Query 541 EYDYVIFAQTSDTAHACNANRFNVAITRAKKGIFCIMSDRTLFDALKFFEI 591 EYDYVI+ QTSDT HA N NRFNVAITRAK GI CIM DRT+++ L F+E+ Sbjct 5493 EYDYVIYTQTSDTQHATNVNRFNVAITRAKVGILCIMCDRTMYENLDFYEL 5543 >RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Non-structural protein 1; Short=nsp1; AltName: Full=p9; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p87; Contains: RecName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=PL1-PRO/PL2-PRO; AltName: Full=PLP1/PLP2; AltName: Full=Papain-like proteinases 1/2; AltName: Full=p195; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; AltName: Full=Peptide HD2; Contains: RecName: Full=3C-like proteinase; Short=3CL-PRO; Short=3CLp; AltName: Full=M-PRO; AltName: Full=nsp5; AltName: Full=p34; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; AltName: Full=p5; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; AltName: Full=p23; Contains: RecName: Full=Non-structural protein 9; Short=nsp9; AltName: Full=p12; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; AltName: Full=p14; Contains: RecName: Full=RNA-directed RNA polymerase; Short=Pol; Short=RdRp; AltName: Full=nsp12; AltName: Full=p100; Contains: RecName: Full=Helicase; Short=Hel; AltName: Full=nsp13; AltName: Full=p66; AltName: Full=p66-HEL; Contains: RecName: Full=Exoribonuclease; Short=ExoN; AltName: Full=nsp14; Contains: RecName: Full=Uridylate-specific endoribonuclease; AltName: Full=NendoU; AltName: Full=nsp15; AltName: Full=p41; Contains: RecName: Full=Putative 2'-O-methyl transferase; AltName: Full=nsp16 [Porcine transmissible gastroenteritis coronavirus strain Purdue] Sequence ID: P0C6Y5.1 Length: 6684 Range 1: 4928 to 5518 Score:975 bits(2520), Expect:0.0, Method:Compositional matrix adjust., Identities:444/591(75%), Positives:522/591(88%), Gaps:0/591(0%) Query 1 AAGLCVVCGSQTVLRCGDCLRRPMLCTKCAYDHVFGTDHKFILAITPYVCNTSGCNVNDV 60 AAG+CVVCGSQTVLRCGDCLRRP+LCTKCAYDHV GT HKFI++ITPYVC+ +GCNVNDV Sbjct 4928 AAGMCVVCGSQTVLRCGDCLRRPLLCTKCAYDHVMGTKHKFIMSITPYVCSFNGCNVNDV 4987 Query 61 TKLYLGGLNYYCVDHKPHLSFPLCSAGNVFGLYKSSALGSMDIDVFNKLSTSDWSDIRDY 120 TKL+LGGL+YYC++HKP LSFPLC+ GNVFGLYKSSA+GS ++ FNKL+ SDW+++ DY Sbjct 4988 TKLFLGGLSYYCMNHKPQLSFPLCANGNVFGLYKSSAVGSEAVEDFNKLAVSDWTNVEDY 5047 Query 121 KLANDAKESLRLFAAETVKAKEESVKSSYAYATLKEIVGPKELLLLWESGKAKPPLNRNS 180 KLAN+ KESL++FAAETVKAKEESVKS YAYA LKE++GPKE++L WE+ K KPPLNRNS Sbjct 5048 KLANNVKESLKIFAAETVKAKEESVKSEYAYAVLKEVIGPKEIVLQWEASKTKPPLNRNS 5107 Query 181 VFTCFQITKDSKFQVGEFVFEKVDYGSDTVTYKSTATTKLVPGMLFILTSHNVAPLRAPT 240 VFTCFQI+KD+K Q+GEFVFE+ +YGSD+V YKST+T KL PGM+F+LTSHNV+PL+AP Sbjct 5108 VFTCFQISKDTKIQLGEFVFEQSEYGSDSVYYKSTSTYKLTPGMIFVLTSHNVSPLKAPI 5167 Query 241 MANQEKYSTIYKLHPSFNVSDAYANLVPYYQLIGKQRITTIQGPPGSGKSHCSIGIGVYY 300 + NQEKY+TI KL+P FN+++AY LVPYYQ+IGKQ+ TTIQGPPGSGKSHC IG+G+YY Sbjct 5168 LVNQEKYNTISKLYPVFNIAEAYNTLVPYYQMIGKQKFTTIQGPPGSGKSHCVIGLGLYY 5227 Query 301 PGARIVFTACSHAAVDSLCAKAVTAYSVDKCTRIIPARARVECYSGFKPNNNSAQYVFST 360 P ARIV+TACSHAAVD+LC KA ++VD+C+RIIP R RV+CY+GFKPNN +AQY+F T Sbjct 5228 PQARIVYTACSHAAVDALCEKAAKNFNVDRCSRIIPQRIRVDCYTGFKPNNTNAQYLFCT 5287 Query 361 VNALPEVNADIVVVDEVSMCTNYDLSVINQRISYKHIVYVGDPQQLPAPRVLISKGVMEP 420 VNALPE + DIVVVDEVSMCTNYDLSVIN R+SYKHIVYVGDPQQLPAPR LI+KGV++P Sbjct 5288 VNALPEASCDIVVVDEVSMCTNYDLSVINSRLSYKHIVYVGDPQQLPAPRTLINKGVLQP 5347 Query 421 IDYNVVTQRMCAIGPDVFLHKCYRCPAEIVNTVSELVYENKFVPVKEASKQCFKIFERGS 480 DYNVVT+RMC +GPDVFLHKCYRCPAEIV TVS LVYENKFVPV SKQCFK+F +G Sbjct 5348 QDYNVVTKRMCTLGPDVFLHKCYRCPAEIVKTVSALVYENKFVPVNPESKQCFKMFVKGQ 5407 Query 481 VQVDNGSSINRRQLDVVKRFIHKNSTWSKAVFISPYNSQNYVAARLLGLQTQTVDSAQGS 540 VQ+++ SSIN +QL+VVK F+ N W KAVFISPYNSQNYVA RLLGLQTQTVDSAQGS Sbjct 5408 VQIESNSSINNKQLEVVKAFLAHNPKWRKAVFISPYNSQNYVARRLLGLQTQTVDSAQGS 5467 Query 541 EYDYVIFAQTSDTAHACNANRFNVAITRAKKGIFCIMSDRTLFDALKFFEI 591 EYDYVI+ QTSDT HA N NRFNVAITRAK GI CIM DRT+++ L F+E+ Sbjct 5468 EYDYVIYTQTSDTQHATNVNRFNVAITRAKVGILCIMCDRTMYENLDFYEL 5518 >RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Host translation inhibitor nsp1; Short=nsp1; AltName: Full=Leader protein; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p65 homolog; Contains: RecName: Full=Papain-like proteinase; Short=PL-PRO; AltName: Full=Non-structural protein 3; Short=nsp3; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; Contains: RecName: Full=3C-like proteinase; Short=3CL-PRO; Short=3CLp; AltName: Full=nsp5; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; Contains: RecName: Full=Non-structural protein 9; Short=nsp9; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; Contains: RecName: Full=RNA-directed RNA polymerase; Short=Pol; Short=RdRp; AltName: Full=nsp12; Contains: RecName: Full=Helicase; Short=Hel; AltName: Full=nsp13; Contains: RecName: Full=Guanine-N7 methyltransferase; Short=ExoN; AltName: Full=nsp14; Contains: RecName: Full=Uridylate-specific endoribonuclease; AltName: Full=NendoU; AltName: Full=nsp15; Contains: RecName: Full=2'-O-methyltransferase; AltName: Full=nsp16 [Pipistrellus bat coronavirus HKU5] Sequence ID: P0C6W4.1 Length: 7182 Range 1: 5402 to 5997 Score:798 bits(2061), Expect:0.0, Method:Compositional matrix adjust., Identities:375/597(63%), Positives:466/597(78%), Gaps:1/597(0%) Query 1 AAGLCVVCGSQTVLRCGDCLRRPMLCTKCAYDHVFGTDHKFILAITPYVCNTSGCNVNDV 60 A G CVVC SQT LRCG C+RRP LC KC YDHV T HK +L+++PYVCN GC+V DV Sbjct 5402 AVGSCVVCHSQTSLRCGTCIRRPFLCCKCCYDHVIATPHKMVLSVSPYVCNAPGCDVADV 5461 Query 61 TKLYLGGLNYYCVDHKPHLSFPLCSAGNVFGLYKSSALGSMDIDVFNKLSTSDWSDIRDY 120 TKLYLGG++Y+C+DH+P SFPLC+ G VFGLYK+ GS + FN+L+T DW++ DY Sbjct 5462 TKLYLGGMSYFCIDHRPVCSFPLCANGLVFGLYKNMCTGSPSVTEFNRLATCDWTESGDY 5521 Query 121 KLANDAKESLRLFAAETVKAKEESVKSSYAYATLKEIVGPKELLLLWESGKAKPPLNRNS 180 LAN E L+LFAAET++A EE+ K SYA AT+KEIVG +ELLL+WE+GKAKPPLNRN Sbjct 5522 TLANTTTEPLKLFAAETLRATEEASKQSYAIATIKEIVGERELLLVWEAGKAKPPLNRNY 5581 Query 181 VFTCFQITKDSKFQVGEFVFEKVDYGSDTVTYKSTATTKLVPGMLFILTSHNVAPLRAPT 240 VFT + ITK+SK Q+GE+VFE++DY SD V+YKS+ T KL G +F+LTSH+VA L+APT Sbjct 5582 VFTGYHITKNSKVQLGEYVFERIDY-SDAVSYKSSTTYKLAVGDIFVLTSHSVATLQAPT 5640 Query 241 MANQEKYSTIYKLHPSFNVSDAYANLVPYYQLIGKQRITTIQGPPGSGKSHCSIGIGVYY 300 + NQE+Y I L+P+ V + +AN V +Q G + T+QGPPG+GKSH +IG+ +YY Sbjct 5641 IVNQERYVKITGLYPTLTVPEEFANHVANFQKAGFSKFVTVQGPPGTGKSHFAIGLAIYY 5700 Query 301 PGARIVFTACSHAAVDSLCAKAVTAYSVDKCTRIIPARARVECYSGFKPNNNSAQYVFST 360 P AR+V+TACSHAAVD+LC KA ++ KC+RIIPA+ARVECY FK N ++QY+FST Sbjct 5701 PTARVVYTACSHAAVDALCEKAFKYLNIAKCSRIIPAKARVECYDQFKVNETNSQYLFST 5760 Query 361 VNALPEVNADIVVVDEVSMCTNYDLSVINQRISYKHIVYVGDPQQLPAPRVLISKGVMEP 420 +NALPE +ADI+VVDEVSMCTNYDLSVIN RI KHIVYVGDP QLPAPR L+++G +EP Sbjct 5761 INALPETSADILVVDEVSMCTNYDLSVINARIKAKHIVYVGDPAQLPAPRTLLTRGTLEP 5820 Query 421 IDYNVVTQRMCAIGPDVFLHKCYRCPAEIVNTVSELVYENKFVPVKEASKQCFKIFERGS 480 ++N VT+ MC +GPD+FL CYRCP EIVNTVS LVY NK V K AS QCFKI +GS Sbjct 5821 ENFNSVTRLMCNLGPDIFLSVCYRCPEEIVNTVSALVYNNKLVAKKPASGQCFKILYKGS 5880 Query 481 VQVDNGSSINRRQLDVVKRFIHKNSTWSKAVFISPYNSQNYVAARLLGLQTQTVDSAQGS 540 V D S+INR QL+ VK FI N WSKAVFISPYNSQN VA +LGL TQTVDS+QGS Sbjct 5881 VTHDASSAINRPQLNFVKSFIAANPNWSKAVFISPYNSQNAVARSVLGLTTQTVDSSQGS 5940 Query 541 EYDYVIFAQTSDTAHACNANRFNVAITRAKKGIFCIMSDRTLFDALKFFEITMTDLQ 597 EY YVIF QT+DTAHA N NRFNVA+TRA+KGI C+M+ + LFD+L+F E+++ + + Sbjct 5941 EYPYVIFCQTADTAHANNINRFNVAVTRAQKGILCVMTSQALFDSLEFAEVSLNNYK 5997 >RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Host translation inhibitor nsp1; Short=nsp1; AltName: Full=Leader protein; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p65 homolog; Contains: RecName: Full=Papain-like proteinase; Short=PL-PRO; AltName: Full=Non-structural protein 3; Short=nsp3; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; Contains: RecName: Full=3C-like proteinase; Short=3CL-PRO; Short=3CLp; AltName: Full=nsp5; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; Contains: RecName: Full=Non-structural protein 9; Short=nsp9; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; Contains: RecName: Full=RNA-directed RNA polymerase; Short=Pol; Short=RdRp; AltName: Full=nsp12; Contains: RecName: Full=Helicase; Short=Hel; AltName: Full=nsp13; Contains: RecName: Full=Guanine-N7 methyltransferase; Short=ExoN; AltName: Full=nsp14; Contains: RecName: Full=Uridylate-specific endoribonuclease; AltName: Full=NendoU; AltName: Full=nsp15; Contains: RecName: Full=2'-O-methyltransferase; AltName: Full=nsp16 [Bat coronavirus (BtCoV/133/2005)] Sequence ID: P0C6W1.1 Length: 7126 Range 1: 5362 to 5957 Score:795 bits(2053), Expect:0.0, Method:Compositional matrix adjust., Identities:375/597(63%), Positives:466/597(78%), Gaps:1/597(0%) Query 1 AAGLCVVCGSQTVLRCGDCLRRPMLCTKCAYDHVFGTDHKFILAITPYVCNTSGCNVNDV 60 A G CVVC SQT LRCG C+RRP LC KC YDHV T HK +L+++PYVCN GC+V+DV Sbjct 5362 AVGSCVVCHSQTSLRCGTCIRRPFLCCKCCYDHVIATTHKMVLSVSPYVCNAPGCDVSDV 5421 Query 61 TKLYLGGLNYYCVDHKPHLSFPLCSAGNVFGLYKSSALGSMDIDVFNKLSTSDWSDIRDY 120 TKLYLGG++YYC DH+P SFPLC+ G VFGLYK+ GS I FN+L+T DWSD DY Sbjct 5422 TKLYLGGMSYYCNDHRPVCSFPLCANGLVFGLYKNMCTGSSSIMEFNRLATCDWSDSGDY 5481 Query 121 KLANDAKESLRLFAAETVKAKEESVKSSYAYATLKEIVGPKELLLLWESGKAKPPLNRNS 180 LAN E L+LFAAET++A EE+ K SYA AT+KEIVG +EL+L+WE GK+KPPLNRN Sbjct 5482 TLANTTTEPLKLFAAETLRATEEASKQSYAIATIKEIVGERELILVWEVGKSKPPLNRNY 5541 Query 181 VFTCFQITKDSKFQVGEFVFEKVDYGSDTVTYKSTATTKLVPGMLFILTSHNVAPLRAPT 240 VFT + +TK+SK Q+GE+VFE++DY SD V+YKS+ T KL G +F+LTSH+VA L APT Sbjct 5542 VFTGYHLTKNSKVQLGEYVFERIDY-SDAVSYKSSTTYKLAVGDIFVLTSHSVATLSAPT 5600 Query 241 MANQEKYSTIYKLHPSFNVSDAYANLVPYYQLIGKQRITTIQGPPGSGKSHCSIGIGVYY 300 + NQE+Y I ++P+ V + +AN V +Q G + T+QGPPG+GKSH +IG+ +YY Sbjct 5601 IVNQERYLKITGIYPTITVPEEFANHVVNFQKAGFSKYVTVQGPPGTGKSHFAIGLAIYY 5660 Query 301 PGARIVFTACSHAAVDSLCAKAVTAYSVDKCTRIIPARARVECYSGFKPNNNSAQYVFST 360 P ARIV+TACSHAAVD+LCAKA ++ KC+RIIPA+ARVECY FK N+ +AQY+FST Sbjct 5661 PTARIVYTACSHAAVDALCAKAFKYLNIAKCSRIIPAKARVECYDRFKVNDTNAQYLFST 5720 Query 361 VNALPEVNADIVVVDEVSMCTNYDLSVINQRISYKHIVYVGDPQQLPAPRVLISKGVMEP 420 VNALPE++ DI+VVDEVSMCTNYDLS+IN R+ KHIVYVGDP QLPAPR L+++G +EP Sbjct 5721 VNALPEISVDILVVDEVSMCTNYDLSIINSRVKAKHIVYVGDPAQLPAPRTLLTRGTLEP 5780 Query 421 IDYNVVTQRMCAIGPDVFLHKCYRCPAEIVNTVSELVYENKFVPVKEASKQCFKIFERGS 480 ++N VT+ MC +GPD+FL CYRCP EIVNTVS LVY NK K+AS QCFKI +GS Sbjct 5781 ENFNSVTRLMCNLGPDIFLSVCYRCPKEIVNTVSALVYNNKLSAKKDASGQCFKILFKGS 5840 Query 481 VQVDNGSSINRRQLDVVKRFIHKNSTWSKAVFISPYNSQNYVAARLLGLQTQTVDSAQGS 540 V D S+INR QL+ VK FI N WSKAVFISPYNSQN VA +LGL TQTVDS+QGS Sbjct 5841 VTHDASSAINRPQLNFVKTFIAANPNWSKAVFISPYNSQNAVARSMLGLTTQTVDSSQGS 5900 Query 541 EYDYVIFAQTSDTAHACNANRFNVAITRAKKGIFCIMSDRTLFDALKFFEITMTDLQ 597 EY YVIF QT+DTAHA N NRFNVA+TRA+KGI C+M+ + LFD+L+F E+++ + + Sbjct 5901 EYPYVIFCQTADTAHANNLNRFNVAVTRAQKGILCVMTSQVLFDSLEFAELSLNNYK 5957 >RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Host translation inhibitor nsp1; Short=nsp1; AltName: Full=Leader protein; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p65 homolog; Contains: RecName: Full=Papain-like proteinase; Short=PL-PRO; AltName: Full=Non-structural protein 3; Short=nsp3; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; Contains: RecName: Full=3C-like proteinase; Short=3CL-PRO; Short=3CLp; AltName: Full=nsp5; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; Contains: RecName: Full=Non-structural protein 9; Short=nsp9; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; Contains: RecName: Full=RNA-directed RNA polymerase; Short=Pol; Short=RdRp; AltName: Full=nsp12; Contains: RecName: Full=Helicase; Short=Hel; AltName: Full=nsp13; Contains: RecName: Full=Guanine-N7 methyltransferase; Short=ExoN; AltName: Full=nsp14; Contains: RecName: Full=Uridylate-specific endoribonuclease; AltName: Full=NendoU; AltName: Full=nsp15; Contains: RecName: Full=2'-O-methyltransferase; AltName: Full=nsp16 [Tylonycteris bat coronavirus HKU4] Sequence ID: P0C6W3.1 Length: 7119 Range 1: 5355 to 5950 Score:788 bits(2036), Expect:0.0, Method:Compositional matrix adjust., Identities:372/597(62%), Positives:464/597(77%), Gaps:1/597(0%) Query 1 AAGLCVVCGSQTVLRCGDCLRRPMLCTKCAYDHVFGTDHKFILAITPYVCNTSGCNVNDV 60 A G CVVC SQT LRCG C+RRP LC KC YDHV T HK +L+++PYVCN GC+V+DV Sbjct 5355 AVGSCVVCHSQTSLRCGTCIRRPFLCCKCCYDHVIATPHKMVLSVSPYVCNAPGCDVSDV 5414 Query 61 TKLYLGGLNYYCVDHKPHLSFPLCSAGNVFGLYKSSALGSMDIDVFNKLSTSDWSDIRDY 120 TKLYLGG++YYC DH+P SFPLC+ G VFGLYK+ GS I FN+L+T DWSD DY Sbjct 5415 TKLYLGGMSYYCNDHRPVCSFPLCANGLVFGLYKNMCTGSSSIMEFNRLATCDWSDSGDY 5474 Query 121 KLANDAKESLRLFAAETVKAKEESVKSSYAYATLKEIVGPKELLLLWESGKAKPPLNRNS 180 LAN E L+LFAAET++A EE+ K SYA AT+KEIVG +EL+L+WE GK+KPPLNRN Sbjct 5475 TLANTTTEPLKLFAAETLRATEEASKQSYAIATIKEIVGERELILVWEVGKSKPPLNRNY 5534 Query 181 VFTCFQITKDSKFQVGEFVFEKVDYGSDTVTYKSTATTKLVPGMLFILTSHNVAPLRAPT 240 VFT + +TK+SK Q+GE+VFE++DY SD V+YKS+ T KL G +F+LTSH+VA L APT Sbjct 5535 VFTGYHLTKNSKVQLGEYVFERIDY-SDAVSYKSSTTYKLAVGDIFVLTSHSVATLSAPT 5593 Query 241 MANQEKYSTIYKLHPSFNVSDAYANLVPYYQLIGKQRITTIQGPPGSGKSHCSIGIGVYY 300 + NQE+Y I ++P+ V + +AN V +Q G + T+QGPPG+GKSH +IG+ +YY Sbjct 5594 IVNQERYLKITGIYPTITVPEEFANHVVNFQKAGFSKYVTVQGPPGTGKSHFAIGLAIYY 5653 Query 301 PGARIVFTACSHAAVDSLCAKAVTAYSVDKCTRIIPARARVECYSGFKPNNNSAQYVFST 360 P ARIV+TACSHAAVD+LC KA ++ KC+RIIPA+ARVECY FK N+ ++QY+FST Sbjct 5654 PTARIVYTACSHAAVDALCEKAFKYLNIAKCSRIIPAKARVECYDRFKVNDTNSQYLFST 5713 Query 361 VNALPEVNADIVVVDEVSMCTNYDLSVINQRISYKHIVYVGDPQQLPAPRVLISKGVMEP 420 VNALPE++ DI+VVDEVSMCTNYDLS+IN R+ KHIVYVGDP QLPAPR L+ +G +EP Sbjct 5714 VNALPEISVDILVVDEVSMCTNYDLSIINSRVKAKHIVYVGDPAQLPAPRTLLIRGTLEP 5773 Query 421 IDYNVVTQRMCAIGPDVFLHKCYRCPAEIVNTVSELVYENKFVPVKEASKQCFKIFERGS 480 ++N VT+ MC +GPD+FL CYRCP EIV+TVS LVY NK K+AS QCFKI +GS Sbjct 5774 ENFNSVTRLMCNLGPDIFLSVCYRCPKEIVSTVSALVYNNKLSAKKDASGQCFKILFKGS 5833 Query 481 VQVDNGSSINRRQLDVVKRFIHKNSTWSKAVFISPYNSQNYVAARLLGLQTQTVDSAQGS 540 V D S+INR QL+ VK FI N WSKAVFISPYNSQN VA +LGL TQTVDS+QGS Sbjct 5834 VTHDASSAINRPQLNFVKTFIAANPNWSKAVFISPYNSQNAVARSMLGLTTQTVDSSQGS 5893 Query 541 EYDYVIFAQTSDTAHACNANRFNVAITRAKKGIFCIMSDRTLFDALKFFEITMTDLQ 597 EY YVIF QT+DTAHA N NRFNVA+TRA+KGI C+M+ + LFD+L+F E+++ + + Sbjct 5894 EYPYVIFCQTADTAHANNLNRFNVAVTRAQKGILCVMTSQVLFDSLEFAELSLNNYK 5950 >RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Host translation inhibitor nsp1; Short=nsp1; AltName: Full=Leader protein; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p65 homolog; Contains: RecName: Full=Papain-like proteinase; Short=PL-PRO; AltName: Full=Non-structural protein 3; Short=nsp3; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; Contains: RecName: Full=3C-like proteinase; Short=3CL-PRO; Short=3CLp; AltName: Full=nsp5; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; Contains: RecName: Full=Non-structural protein 9; Short=nsp9; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; Contains: RecName: Full=RNA-directed RNA polymerase; Short=Pol; Short=RdRp; AltName: Full=nsp12; Contains: RecName: Full=Helicase; Short=Hel; AltName: Full=nsp13; Contains: RecName: Full=Guanine-N7 methyltransferase; Short=ExoN; AltName: Full=nsp14; Contains: RecName: Full=Uridylate-specific endoribonuclease; AltName: Full=NendoU; AltName: Full=nsp15; Contains: RecName: Full=2'-O-methyltransferase; AltName: Full=nsp16 [Betacoronavirus England 1] Sequence ID: K9N7C7.1 Length: 7078 Range 1: 5311 to 5906 Score:787 bits(2033), Expect:0.0, Method:Compositional matrix adjust., Identities:370/597(62%), Positives:464/597(77%), Gaps:1/597(0%) Query 1 AAGLCVVCGSQTVLRCGDCLRRPMLCTKCAYDHVFGTDHKFILAITPYVCNTSGCNVNDV 60 A G CVVC SQT LRCG C+RRP LC KC YDHV T HK +L+++PYVCN GC V+DV Sbjct 5311 AVGSCVVCHSQTSLRCGTCIRRPFLCCKCCYDHVIATPHKMVLSVSPYVCNAPGCGVSDV 5370 Query 61 TKLYLGGLNYYCVDHKPHLSFPLCSAGNVFGLYKSSALGSMDIDVFNKLSTSDWSDIRDY 120 TKLYLGG++Y+CVDH+P SFPLC+ G VFGLYK+ GS I FN+L+T DW++ DY Sbjct 5371 TKLYLGGMSYFCVDHRPVCSFPLCANGLVFGLYKNMCTGSPSIVEFNRLATCDWTESGDY 5430 Query 121 KLANDAKESLRLFAAETVKAKEESVKSSYAYATLKEIVGPKELLLLWESGKAKPPLNRNS 180 LAN E L+LFAAET++A EE+ K SYA AT+KEIVG ++LLL+WE+GK+KPPLNRN Sbjct 5431 TLANTTTEPLKLFAAETLRATEEASKQSYAIATIKEIVGERQLLLVWEAGKSKPPLNRNY 5490 Query 181 VFTCFQITKDSKFQVGEFVFEKVDYGSDTVTYKSTATTKLVPGMLFILTSHNVAPLRAPT 240 VFT + ITK+SK Q+GE++FE++DY SD V+YKS+ T KL G +F+LTSH+VA L APT Sbjct 5491 VFTGYHITKNSKVQLGEYIFERIDY-SDAVSYKSSTTYKLTVGDIFVLTSHSVATLTAPT 5549 Query 241 MANQEKYSTIYKLHPSFNVSDAYANLVPYYQLIGKQRITTIQGPPGSGKSHCSIGIGVYY 300 + NQE+Y I L+P+ V + +A+ V +Q G + T+QGPPG+GKSH +IG+ +YY Sbjct 5550 IVNQERYVKITGLYPTITVPEEFASHVANFQKSGYSKYVTVQGPPGTGKSHFAIGLAIYY 5609 Query 301 PGARIVFTACSHAAVDSLCAKAVTAYSVDKCTRIIPARARVECYSGFKPNNNSAQYVFST 360 P AR+V+TACSHAAVD+LC KA ++ KC+RIIPA+ARVECY FK N ++QY+FST Sbjct 5610 PTARVVYTACSHAAVDALCEKAFKYLNIAKCSRIIPAKARVECYDRFKVNETNSQYLFST 5669 Query 361 VNALPEVNADIVVVDEVSMCTNYDLSVINQRISYKHIVYVGDPQQLPAPRVLISKGVMEP 420 +NALPE +ADI+VVDEVSMCTNYDLS+IN RI KHIVYVGDP QLPAPR L+++G +EP Sbjct 5670 INALPETSADILVVDEVSMCTNYDLSIINARIKAKHIVYVGDPAQLPAPRTLLTRGTLEP 5729 Query 421 IDYNVVTQRMCAIGPDVFLHKCYRCPAEIVNTVSELVYENKFVPVKEASKQCFKIFERGS 480 ++N VT+ MC +GPD+FL CYRCP EIV+TVS LVY NK + KE S QCFKI +G+ Sbjct 5730 ENFNSVTRLMCNLGPDIFLSMCYRCPKEIVSTVSALVYNNKLLAKKELSGQCFKILYKGN 5789 Query 481 VQVDNGSSINRRQLDVVKRFIHKNSTWSKAVFISPYNSQNYVAARLLGLQTQTVDSAQGS 540 V D S+INR QL VK FI N WSKAVFISPYNSQN VA +LGL TQTVDS+QGS Sbjct 5790 VTHDASSAINRPQLTFVKNFITANPAWSKAVFISPYNSQNAVARSMLGLTTQTVDSSQGS 5849 Query 541 EYDYVIFAQTSDTAHACNANRFNVAITRAKKGIFCIMSDRTLFDALKFFEITMTDLQ 597 EY YVIF QT+DTAHA N NRFNVAITRA+KGI C+M+ + LF++L+F E++ T+ + Sbjct 5850 EYQYVIFCQTADTAHANNINRFNVAITRAQKGILCVMTSQALFESLEFTELSFTNYK 5906 >RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Host translation inhibitor nsp1; Short=nsp1; AltName: Full=Leader protein; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p65 homolog; Contains: RecName: Full=Papain-like proteinase; Short=PL-PRO; AltName: Full=Non-structural protein 3; Short=nsp3; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; Contains: RecName: Full=3C-like proteinase; Short=3CL-PRO; Short=3CLp; AltName: Full=nsp5; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; Contains: RecName: Full=Non-structural protein 9; Short=nsp9; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; Contains: RecName: Full=RNA-directed RNA polymerase; Short=Pol; Short=RdRp; AltName: Full=nsp12; Contains: RecName: Full=Helicase; Short=Hel; AltName: Full=nsp13; Contains: RecName: Full=Guanine-N7 methyltransferase; Short=ExoN; AltName: Full=nsp14; Contains: RecName: Full=Uridylate-specific endoribonuclease; AltName: Full=NendoU; AltName: Full=nsp15; Contains: RecName: Full=2'-O-methyltransferase; AltName: Full=nsp16 [Rousettus bat coronavirus HKU9] Sequence ID: P0C6W5.1 Length: 6930 Range 1: 5166 to 5759 Score:775 bits(2001), Expect:0.0, Method:Compositional matrix adjust., Identities:361/595(61%), Positives:460/595(77%), Gaps:1/595(0%) Query 1 AAGLCVVCGSQTVLRCGDCLRRPMLCTKCAYDHVFGTDHKFILAITPYVCNTSGCNVNDV 60 + G CVVC SQT LRCG C+RRP LC KC YDHV T HK +L++TPYVCN C+V DV Sbjct 5166 SVGTCVVCNSQTSLRCGGCIRRPFLCCKCCYDHVVSTTHKLVLSVTPYVCNNPSCDVADV 5225 Query 61 TKLYLGGLNYYCVDHKPHLSFPLCSAGNVFGLYKSSALGSMDIDVFNKLSTSDWSDIRDY 120 T+LYLGG++YYC DH+P +SFPLC+ G VFGLYK+ GS D+ FN L+T DWS+ +DY Sbjct 5226 TQLYLGGMSYYCRDHRPPISFPLCANGQVFGLYKNICTGSPDVADFNSLATCDWSNSKDY 5285 Query 121 KLANDAKESLRLFAAETVKAKEESVKSSYAYATLKEIVGPKELLLLWESGKAKPPLNRNS 180 LAN A E L+LFAAET++A EE+ K +YA A +KE++ +EL+L WE+GK +PPLNRN Sbjct 5286 VLANTATERLKLFAAETLRATEENAKQAYASAVVKEVLSDRELVLSWETGKTRPPLNRNY 5345 Query 181 VFTCFQITKDSKFQVGEFVFEKVDYGSDTVTYKSTATTKLVPGMLFILTSHNVAPLRAPT 240 VFT F ITK+SK Q+GE++FEK DYG D V Y+S+ T KL G F+LTSH+V PL +PT Sbjct 5346 VFTGFHITKNSKVQLGEYIFEKGDYG-DVVNYRSSTTYKLQVGDYFVLTSHSVQPLSSPT 5404 Query 241 MANQEKYSTIYKLHPSFNVSDAYANLVPYYQLIGKQRITTIQGPPGSGKSHCSIGIGVYY 300 + QE+Y+ + L+P+ NV +++A+ V +YQ +G R TT+QGPPG+GKSH SIG+ +YY Sbjct 5405 LLPQERYTKLVGLYPAMNVPESFASNVVHYQRVGMSRYTTVQGPPGTGKSHLSIGLALYY 5464 Query 301 PGARIVFTACSHAAVDSLCAKAVTAYSVDKCTRIIPARARVECYSGFKPNNNSAQYVFST 360 P A+IV+TACSHAAVD+LC KA +++C+RI+PA+ARVEC+S FK N+ AQYVFST Sbjct 5465 PSAKIVYTACSHAAVDALCEKAHKNLPINRCSRIVPAKARVECFSKFKVNDVGAQYVFST 5524 Query 361 VNALPEVNADIVVVDEVSMCTNYDLSVINQRISYKHIVYVGDPQQLPAPRVLISKGVMEP 420 +NALPE ADI+VVDEVSMCTNYDLS+IN R+ KHIVYVGDP QLPAPR L++KG + P Sbjct 5525 INALPETTADILVVDEVSMCTNYDLSMINARVRAKHIVYVGDPAQLPAPRTLLTKGTLAP 5584 Query 421 IDYNVVTQRMCAIGPDVFLHKCYRCPAEIVNTVSELVYENKFVPVKEASKQCFKIFERGS 480 +N V + M A+GPD+FL CYRCP EIV+TVS LVY+ K K + +C+K + +GS Sbjct 5585 EHFNSVCRLMVAVGPDIFLATCYRCPKEIVDTVSALVYDKKLKANKVTTGECYKCYYKGS 5644 Query 481 VQVDNGSSINRRQLDVVKRFIHKNSTWSKAVFISPYNSQNYVAARLLGLQTQTVDSAQGS 540 V D+ S+IN+ QL +VK F+ KN W AVFISPYNSQN VA R+LGLQTQTVDS+QGS Sbjct 5645 VTHDSSSAINKPQLGLVKEFLIKNPKWQSAVFISPYNSQNSVARRMLGLQTQTVDSSQGS 5704 Query 541 EYDYVIFAQTSDTAHACNANRFNVAITRAKKGIFCIMSDRTLFDALKFFEITMTD 595 E+DYVI+ QTSDTAHA N NRFNVAITRAKKGI C+MSD TL+++L+F + + D Sbjct 5705 EFDYVIYCQTSDTAHALNVNRFNVAITRAKKGILCVMSDSTLYESLEFTPLDVND 5759 >RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Host translation inhibitor nsp1; Short=nsp1; AltName: Full=Leader protein; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p65 homolog; Contains: RecName: Full=Papain-like proteinase; Short=PL-PRO; AltName: Full=Non-structural protein 3; Short=nsp3; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; Contains: RecName: Full=3C-like proteinase; Short=3CL-PRO; Short=3CLp; AltName: Full=nsp5; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; Contains: RecName: Full=Non-structural protein 9; Short=nsp9; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; Contains: RecName: Full=RNA-directed RNA polymerase; Short=Pol; Short=RdRp; AltName: Full=nsp12; Contains: RecName: Full=Helicase; Short=Hel; AltName: Full=nsp13; Contains: RecName: Full=Guanine-N7 methyltransferase; Short=ExoN; AltName: Full=nsp14; Contains: RecName: Full=Uridylate-specific endoribonuclease; AltName: Full=NendoU; AltName: Full=nsp15; Contains: RecName: Full=2'-O-methyltransferase; AltName: Full=nsp16 [Bat SARS CoV Rp3/2004] Sequence ID: P0C6W6.1 Length: 7071 Range 1: 5300 to 5886 Score:765 bits(1975), Expect:0.0, Method:Compositional matrix adjust., Identities:358/588(61%), Positives:446/588(75%), Gaps:1/588(0%) Query 1 AAGLCVVCGSQTVLRCGDCLRRPMLCTKCAYDHVFGTDHKFILAITPYVCNTSGCNVNDV 60 A G CV+C SQT LRCG C+RRP LC KC YDHV T HK +L++ PYVCN GC+V DV Sbjct 5300 AVGACVLCNSQTSLRCGACIRRPFLCCKCCYDHVISTSHKLVLSVNPYVCNAPGCDVTDV 5359 Query 61 TKLYLGGLNYYCVDHKPHLSFPLCSAGNVFGLYKSSALGSMDIDVFNKLSTSDWSDIRDY 120 T+LYLGG++YYC HKP +SFPLC+ G VFGLYK++ +GS ++ FN ++T DW++ DY Sbjct 5360 TQLYLGGMSYYCKSHKPPISFPLCANGQVFGLYKNTCVGSDNVTDFNAIATCDWTNAGDY 5419 Query 121 KLANDAKESLRLFAAETVKAKEESVKSSYAYATLKEIVGPKELLLLWESGKAKPPLNRNS 180 LAN E L+LFAAET+KA EE+ K SY AT++E++ +EL L WE GK +PPLNRN Sbjct 5420 ILANTCTERLKLFAAETLKATEETFKLSYGIATVREVLSDRELHLSWEVGKPRPPLNRNY 5479 Query 181 VFTCFQITKDSKFQVGEFVFEKVDYGSDTVTYKSTATTKLVPGMLFILTSHNVAPLRAPT 240 VFT +++TK+SK Q+GE+ FEK DYG D V Y+ T T KL G F+LTSH V PL APT Sbjct 5480 VFTGYRVTKNSKVQIGEYTFEKGDYG-DAVVYRGTTTYKLNIGDYFVLTSHTVMPLSAPT 5538 Query 241 MANQEKYSTIYKLHPSFNVSDAYANLVPYYQLIGKQRITTIQGPPGSGKSHCSIGIGVYY 300 + QE Y I L+P+ N+SD +++ V YQ +G Q+ +T+QGPPG+GKSH +IG+ +YY Sbjct 5539 LVPQEHYVRITGLYPTLNISDEFSSNVANYQKVGMQKYSTLQGPPGTGKSHFAIGLALYY 5598 Query 301 PGARIVFTACSHAAVDSLCAKAVTAYSVDKCTRIIPARARVECYSGFKPNNNSAQYVFST 360 P ARIV+TACSHAAVD+LC KA+ +DKC+RIIPARARVEC+ FK N+ QYVF T Sbjct 5599 PSARIVYTACSHAAVDALCEKALKYLPIDKCSRIIPARARVECFDKFKVNSTLEQYVFCT 5658 Query 361 VNALPEVNADIVVVDEVSMCTNYDLSVINQRISYKHIVYVGDPQQLPAPRVLISKGVMEP 420 VNALPE ADIVV DE+SM TNYDLSV+N R+ KH VY+GDP QLPAPR L++KG +EP Sbjct 5659 VNALPETTADIVVFDEISMATNYDLSVVNARLRAKHYVYIGDPAQLPAPRTLLTKGTLEP 5718 Query 421 IDYNVVTQRMCAIGPDVFLHKCYRCPAEIVNTVSELVYENKFVPVKEASKQCFKIFERGS 480 +N V + M IGPD+FL C RCPAEIV+TVS LVY+NK KE S QCFK+F +G Sbjct 5719 EYFNSVCRLMKTIGPDMFLGTCRRCPAEIVDTVSALVYDNKLKAHKEKSAQCFKMFYKGV 5778 Query 481 VQVDNGSSINRRQLDVVKRFIHKNSTWSKAVFISPYNSQNYVAARLLGLQTQTVDSAQGS 540 + D S+INR Q+ VV+ F+ +N W KAVFISPYNSQN VA+++LGL TQTVDS+QGS Sbjct 5779 ITHDVSSAINRPQIGVVREFLTRNPAWRKAVFISPYNSQNAVASKILGLPTQTVDSSQGS 5838 Query 541 EYDYVIFAQTSDTAHACNANRFNVAITRAKKGIFCIMSDRTLFDALKF 588 EYDYVIF QT++TAH+CN NRFNVAITRAK GI CIMSDR L+D L+F Sbjct 5839 EYDYVIFTQTTETAHSCNVNRFNVAITRAKIGILCIMSDRDLYDKLQF 5886 >RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Host translation inhibitor nsp1; Short=nsp1; AltName: Full=Leader protein; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p65 homolog; Contains: RecName: Full=Papain-like proteinase; Short=PL-PRO; AltName: Full=Non-structural protein 3; Short=nsp3; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; Contains: RecName: Full=3C-like proteinase; Short=3CL-PRO; Short=3CLp; AltName: Full=nsp5; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; Contains: RecName: Full=Non-structural protein 9; Short=nsp9; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; Contains: RecName: Full=RNA-directed RNA polymerase; Short=Pol; Short=RdRp; AltName: Full=nsp12; Contains: RecName: Full=Helicase; Short=Hel; AltName: Full=nsp13; Contains: RecName: Full=Guanine-N7 methyltransferase; Short=ExoN; AltName: Full=nsp14; Contains: RecName: Full=Uridylate-specific endoribonuclease; AltName: Full=NendoU; AltName: Full=nsp15; Contains: RecName: Full=2'-O-methyltransferase; AltName: Full=nsp16 [Bat CoV 279/2005] Sequence ID: P0C6V9.1 Length: 7079 Range 1: 5308 to 5894 Score:764 bits(1973), Expect:0.0, Method:Compositional matrix adjust., Identities:358/588(61%), Positives:446/588(75%), Gaps:1/588(0%) Query 1 AAGLCVVCGSQTVLRCGDCLRRPMLCTKCAYDHVFGTDHKFILAITPYVCNTSGCNVNDV 60 A G CV+C SQT LRCG C+RRP LC KC YDHV T HK +L++ PYVCN GC+V DV Sbjct 5308 AVGACVLCNSQTSLRCGACIRRPFLCCKCCYDHVISTSHKLVLSVNPYVCNAPGCDVTDV 5367 Query 61 TKLYLGGLNYYCVDHKPHLSFPLCSAGNVFGLYKSSALGSMDIDVFNKLSTSDWSDIRDY 120 T+LYLGG++YYC HKP +SFPLC+ G VFGLYK++ +GS ++ FN ++T DW++ DY Sbjct 5368 TQLYLGGMSYYCKLHKPPISFPLCANGQVFGLYKNTCVGSDNVTDFNAIATCDWTNAGDY 5427 Query 121 KLANDAKESLRLFAAETVKAKEESVKSSYAYATLKEIVGPKELLLLWESGKAKPPLNRNS 180 LAN E L+LFAAET+KA EE+ K SY AT++E++ +EL L WE GK +PPLNRN Sbjct 5428 ILANTCTERLKLFAAETLKATEETFKLSYGIATVREVLSDRELHLSWEVGKPRPPLNRNY 5487 Query 181 VFTCFQITKDSKFQVGEFVFEKVDYGSDTVTYKSTATTKLVPGMLFILTSHNVAPLRAPT 240 VFT +++TK+SK Q+GE+ FEK DYG D V Y+ T T KL G F+LTSH V PL APT Sbjct 5488 VFTGYRVTKNSKVQIGEYTFEKGDYG-DAVVYRGTTTYKLNVGDYFVLTSHTVMPLSAPT 5546 Query 241 MANQEKYSTIYKLHPSFNVSDAYANLVPYYQLIGKQRITTIQGPPGSGKSHCSIGIGVYY 300 + QE Y I L+P+ N+SD +++ V YQ +G Q+ +T+QGPPG+GKSH +IG+ +YY Sbjct 5547 LVPQEHYVRITGLYPTLNISDEFSSNVANYQKVGMQKYSTLQGPPGTGKSHFAIGLALYY 5606 Query 301 PGARIVFTACSHAAVDSLCAKAVTAYSVDKCTRIIPARARVECYSGFKPNNNSAQYVFST 360 P ARIV+TACSHAAVD+LC KA+ +DKC+RIIPARARVEC+ FK N+ QYVF T Sbjct 5607 PSARIVYTACSHAAVDALCEKALKYLPIDKCSRIIPARARVECFDKFKVNSTLEQYVFCT 5666 Query 361 VNALPEVNADIVVVDEVSMCTNYDLSVINQRISYKHIVYVGDPQQLPAPRVLISKGVMEP 420 VNALPE ADIVV DE+SM TNYDLSV+N R+ KH VY+GDP QLPAPR L++KG +EP Sbjct 5667 VNALPETTADIVVFDEISMATNYDLSVVNARLRAKHYVYIGDPAQLPAPRTLLTKGTLEP 5726 Query 421 IDYNVVTQRMCAIGPDVFLHKCYRCPAEIVNTVSELVYENKFVPVKEASKQCFKIFERGS 480 +N V + M IGPD+FL C RCPAEIV+TVS LVY+NK KE S QCFK+F +G Sbjct 5727 EYFNSVCRLMKTIGPDMFLGTCRRCPAEIVDTVSALVYDNKLKAHKEKSAQCFKMFYKGV 5786 Query 481 VQVDNGSSINRRQLDVVKRFIHKNSTWSKAVFISPYNSQNYVAARLLGLQTQTVDSAQGS 540 + D S+INR Q+ VV+ F+ +N W KAVFISPYNSQN VA+++LGL TQTVDS+QGS Sbjct 5787 ITHDVSSAINRPQIGVVREFLTRNPAWRKAVFISPYNSQNAVASKILGLPTQTVDSSQGS 5846 Query 541 EYDYVIFAQTSDTAHACNANRFNVAITRAKKGIFCIMSDRTLFDALKF 588 EYDYVIF QT++TAH+CN NRFNVAITRAK GI CIMSDR L+D L+F Sbjct 5847 EYDYVIFTQTTETAHSCNVNRFNVAITRAKIGILCIMSDRDLYDKLQF 5894 >RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Host translation inhibitor nsp1; AltName: Full=Leader protein; AltName: Full=Non-structural protein 1; Short=nsp1; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p65 homolog; Contains: RecName: Full=Papain-like protease nsp3; AltName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=PL2-PRO; AltName: Full=Papain-like proteinase; Short=PL-PRO; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; Contains: RecName: Full=3C-like proteinase nsp5; Short=3CL-PRO; Short=3CLp; AltName: Full=Main protease; Short=Mpro; AltName: Full=Non-structural protein 5; Short=nsp5; AltName: Full=SARS coronavirus main proteinase; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; Contains: RecName: Full=Non-structural protein 9; Short=nsp9; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; Contains: RecName: Full=RNA-directed RNA polymerase nsp12; Short=Pol; Short=RdRp; AltName: Full=Non-structural protein 12; Short=nsp12; Contains: RecName: Full=Helicase nsp13; Short=Hel; AltName: Full=Non-structural protein 13; Short=nsp13; Contains: RecName: Full=Proofreading exoribonuclease nsp14; Short=ExoN; AltName: Full=Guanine-N7 methyltransferase; AltName: Full=Non-structural protein 14; Short=nsp14; Contains: RecName: Full=Uridylate-specific endoribonuclease nsp15; AltName: Full=NendoU; AltName: Full=Non-structural protein 15; Short=nsp15; Contains: RecName: Full=2'-O-methyltransferase nsp16; AltName: Full=Non-structural protein 16; Short=nsp16 [Severe acute respiratory syndrome coronavirus 2] Sequence ID: P0DTD1.1 Length: 7096 Range 1: 5325 to 5911 Score:764 bits(1972), Expect:0.0, Method:Compositional matrix adjust., Identities:357/588(61%), Positives:446/588(75%), Gaps:1/588(0%) Query 1 AAGLCVVCGSQTVLRCGDCLRRPMLCTKCAYDHVFGTDHKFILAITPYVCNTSGCNVNDV 60 A G CV+C SQT LRCG C+RRP LC KC YDHV T HK +L++ PYVCN GC+V DV Sbjct 5325 AVGACVLCNSQTSLRCGACIRRPFLCCKCCYDHVISTSHKLVLSVNPYVCNAPGCDVTDV 5384 Query 61 TKLYLGGLNYYCVDHKPHLSFPLCSAGNVFGLYKSSALGSMDIDVFNKLSTSDWSDIRDY 120 T+LYLGG++YYC HKP +SFPLC+ G VFGLYK++ +GS ++ FN ++T DW++ DY Sbjct 5385 TQLYLGGMSYYCKSHKPPISFPLCANGQVFGLYKNTCVGSDNVTDFNAIATCDWTNAGDY 5444 Query 121 KLANDAKESLRLFAAETVKAKEESVKSSYAYATLKEIVGPKELLLLWESGKAKPPLNRNS 180 LAN E L+LFAAET+KA EE+ K SY AT++E++ +EL L WE GK +PPLNRN Sbjct 5445 ILANTCTERLKLFAAETLKATEETFKLSYGIATVREVLSDRELHLSWEVGKPRPPLNRNY 5504 Query 181 VFTCFQITKDSKFQVGEFVFEKVDYGSDTVTYKSTATTKLVPGMLFILTSHNVAPLRAPT 240 VFT +++TK+SK Q+GE+ FEK DYG D V Y+ T T KL G F+LTSH V PL APT Sbjct 5505 VFTGYRVTKNSKVQIGEYTFEKGDYG-DAVVYRGTTTYKLNVGDYFVLTSHTVMPLSAPT 5563 Query 241 MANQEKYSTIYKLHPSFNVSDAYANLVPYYQLIGKQRITTIQGPPGSGKSHCSIGIGVYY 300 + QE Y I L+P+ N+SD +++ V YQ +G Q+ +T+QGPPG+GKSH +IG+ +YY Sbjct 5564 LVPQEHYVRITGLYPTLNISDEFSSNVANYQKVGMQKYSTLQGPPGTGKSHFAIGLALYY 5623 Query 301 PGARIVFTACSHAAVDSLCAKAVTAYSVDKCTRIIPARARVECYSGFKPNNNSAQYVFST 360 P ARIV+TACSHAAVD+LC KA+ +DKC+RIIPARARVEC+ FK N+ QYVF T Sbjct 5624 PSARIVYTACSHAAVDALCEKALKYLPIDKCSRIIPARARVECFDKFKVNSTLEQYVFCT 5683 Query 361 VNALPEVNADIVVVDEVSMCTNYDLSVINQRISYKHIVYVGDPQQLPAPRVLISKGVMEP 420 VNALPE ADIVV DE+SM TNYDLSV+N R+ KH VY+GDP QLPAPR L++KG +EP Sbjct 5684 VNALPETTADIVVFDEISMATNYDLSVVNARLRAKHYVYIGDPAQLPAPRTLLTKGTLEP 5743 Query 421 IDYNVVTQRMCAIGPDVFLHKCYRCPAEIVNTVSELVYENKFVPVKEASKQCFKIFERGS 480 +N V + M IGPD+FL C RCPAEIV+TVS LVY+NK K+ S QCFK+F +G Sbjct 5744 EYFNSVCRLMKTIGPDMFLGTCRRCPAEIVDTVSALVYDNKLKAHKDKSAQCFKMFYKGV 5803 Query 481 VQVDNGSSINRRQLDVVKRFIHKNSTWSKAVFISPYNSQNYVAARLLGLQTQTVDSAQGS 540 + D S+INR Q+ VV+ F+ +N W KAVFISPYNSQN VA+++LGL TQTVDS+QGS Sbjct 5804 ITHDVSSAINRPQIGVVREFLTRNPAWRKAVFISPYNSQNAVASKILGLPTQTVDSSQGS 5863 Query 541 EYDYVIFAQTSDTAHACNANRFNVAITRAKKGIFCIMSDRTLFDALKF 588 EYDYVIF QT++TAH+CN NRFNVAITRAK GI CIMSDR L+D L+F Sbjct 5864 EYDYVIFTQTTETAHSCNVNRFNVAITRAKVGILCIMSDRDLYDKLQF 5911 >RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Host translation inhibitor nsp1; AltName: Full=Leader protein; AltName: Full=Non-structural protein 1; Short=nsp1; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p65 homolog; Contains: RecName: Full=Papain-like protease nsp3; Short=PL-PRO; AltName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=PL2-PRO; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; Contains: RecName: Full=3C-like proteinase nsp5; Short=3CL-PRO; Short=3CLp; AltName: Full=Main protease; Short=Mpro; AltName: Full=Non-structural protein 5; Short=nsp5; AltName: Full=SARS coronavirus main proteinase; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; Contains: RecName: Full=Non-structural protein 9; Short=nsp9; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; Contains: RecName: Full=RNA-directed RNA polymerase nsp12; Short=Pol; Short=RdRp; AltName: Full=Non-structural protein 12; Short=nsp12; Contains: RecName: Full=Helicase nsp13; Short=Hel; AltName: Full=Non-structural protein 13; Short=nsp13; Contains: RecName: Full=Proofreading exoribonuclease nsp14; Short=ExoN; AltName: Full=Guanine-N7 methyltransferase; AltName: Full=Non-structural protein 14; Short=nsp14; Contains: RecName: Full=Uridylate-specific endoribonuclease nsp15; AltName: Full=NendoU; AltName: Full=Non-structural protein 15; Short=nsp15; Contains: RecName: Full=2'-O-methyltransferase nsp16; AltName: Full=Non-structural protein 16; Short=nsp16 [Severe acute respiratory syndrome-related coronavirus] Sequence ID: P0C6X7.1 Length: 7073 Range 1: 5302 to 5888 Score:763 bits(1971), Expect:0.0, Method:Compositional matrix adjust., Identities:357/588(61%), Positives:446/588(75%), Gaps:1/588(0%) Query 1 AAGLCVVCGSQTVLRCGDCLRRPMLCTKCAYDHVFGTDHKFILAITPYVCNTSGCNVNDV 60 A G CV+C SQT LRCG C+RRP LC KC YDHV T HK +L++ PYVCN GC+V DV Sbjct 5302 AVGACVLCNSQTSLRCGACIRRPFLCCKCCYDHVISTSHKLVLSVNPYVCNAPGCDVTDV 5361 Query 61 TKLYLGGLNYYCVDHKPHLSFPLCSAGNVFGLYKSSALGSMDIDVFNKLSTSDWSDIRDY 120 T+LYLGG++YYC HKP +SFPLC+ G VFGLYK++ +GS ++ FN ++T DW++ DY Sbjct 5362 TQLYLGGMSYYCKSHKPPISFPLCANGQVFGLYKNTCVGSDNVTDFNAIATCDWTNAGDY 5421 Query 121 KLANDAKESLRLFAAETVKAKEESVKSSYAYATLKEIVGPKELLLLWESGKAKPPLNRNS 180 LAN E L+LFAAET+KA EE+ K SY AT++E++ +EL L WE GK +PPLNRN Sbjct 5422 ILANTCTERLKLFAAETLKATEETFKLSYGIATVREVLSDRELHLSWEVGKPRPPLNRNY 5481 Query 181 VFTCFQITKDSKFQVGEFVFEKVDYGSDTVTYKSTATTKLVPGMLFILTSHNVAPLRAPT 240 VFT +++TK+SK Q+GE+ FEK DYG D V Y+ T T KL G F+LTSH V PL APT Sbjct 5482 VFTGYRVTKNSKVQIGEYTFEKGDYG-DAVVYRGTTTYKLNVGDYFVLTSHTVMPLSAPT 5540 Query 241 MANQEKYSTIYKLHPSFNVSDAYANLVPYYQLIGKQRITTIQGPPGSGKSHCSIGIGVYY 300 + QE Y I L+P+ N+SD +++ V YQ +G Q+ +T+QGPPG+GKSH +IG+ +YY Sbjct 5541 LVPQEHYVRITGLYPTLNISDEFSSNVANYQKVGMQKYSTLQGPPGTGKSHFAIGLALYY 5600 Query 301 PGARIVFTACSHAAVDSLCAKAVTAYSVDKCTRIIPARARVECYSGFKPNNNSAQYVFST 360 P ARIV+TACSHAAVD+LC KA+ +DKC+RIIPARARVEC+ FK N+ QYVF T Sbjct 5601 PSARIVYTACSHAAVDALCEKALKYLPIDKCSRIIPARARVECFDKFKVNSTLEQYVFCT 5660 Query 361 VNALPEVNADIVVVDEVSMCTNYDLSVINQRISYKHIVYVGDPQQLPAPRVLISKGVMEP 420 VNALPE ADIVV DE+SM TNYDLSV+N R+ KH VY+GDP QLPAPR L++KG +EP Sbjct 5661 VNALPETTADIVVFDEISMATNYDLSVVNARLRAKHYVYIGDPAQLPAPRTLLTKGTLEP 5720 Query 421 IDYNVVTQRMCAIGPDVFLHKCYRCPAEIVNTVSELVYENKFVPVKEASKQCFKIFERGS 480 +N V + M IGPD+FL C RCPAEIV+TVS LVY+NK K+ S QCFK+F +G Sbjct 5721 EYFNSVCRLMKTIGPDMFLGTCRRCPAEIVDTVSALVYDNKLKAHKDKSAQCFKMFYKGV 5780 Query 481 VQVDNGSSINRRQLDVVKRFIHKNSTWSKAVFISPYNSQNYVAARLLGLQTQTVDSAQGS 540 + D S+INR Q+ VV+ F+ +N W KAVFISPYNSQN VA+++LGL TQTVDS+QGS Sbjct 5781 ITHDVSSAINRPQIGVVREFLTRNPAWRKAVFISPYNSQNAVASKILGLPTQTVDSSQGS 5840 Query 541 EYDYVIFAQTSDTAHACNANRFNVAITRAKKGIFCIMSDRTLFDALKF 588 EYDYVIF QT++TAH+CN NRFNVAITRAK GI CIMSDR L+D L+F Sbjct 5841 EYDYVIFTQTTETAHSCNVNRFNVAITRAKIGILCIMSDRDLYDKLQF 5888 >RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Host translation inhibitor nsp1; Short=nsp1; AltName: Full=Leader protein; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p65 homolog; Contains: RecName: Full=Papain-like proteinase; Short=PL-PRO; AltName: Full=Non-structural protein 3; Short=nsp3; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; Contains: RecName: Full=3C-like proteinase; Short=3CL-PRO; Short=3CLp; AltName: Full=nsp5; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; Contains: RecName: Full=Non-structural protein 9; Short=nsp9; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; Contains: RecName: Full=RNA-directed RNA polymerase; Short=Pol; Short=RdRp; AltName: Full=nsp12; Contains: RecName: Full=Helicase; Short=Hel; AltName: Full=nsp13; Contains: RecName: Full=Guanine-N7 methyltransferase; Short=ExoN; AltName: Full=nsp14; Contains: RecName: Full=Uridylate-specific endoribonuclease; AltName: Full=NendoU; AltName: Full=nsp15; Contains: RecName: Full=2'-O-methyltransferase; AltName: Full=nsp16 [Bat SARS coronavirus HKU3] Sequence ID: P0C6W2.1 Length: 7067 Range 1: 5296 to 5882 Score:763 bits(1970), Expect:0.0, Method:Compositional matrix adjust., Identities:357/588(61%), Positives:446/588(75%), Gaps:1/588(0%) Query 1 AAGLCVVCGSQTVLRCGDCLRRPMLCTKCAYDHVFGTDHKFILAITPYVCNTSGCNVNDV 60 A G CV+C SQT LRCG C+RRP LC KC YDHV T HK +L++ PYVCN GC+V DV Sbjct 5296 AVGACVLCNSQTSLRCGACIRRPFLCCKCCYDHVISTSHKLVLSVNPYVCNAPGCDVTDV 5355 Query 61 TKLYLGGLNYYCVDHKPHLSFPLCSAGNVFGLYKSSALGSMDIDVFNKLSTSDWSDIRDY 120 T+LYLGG++YYC HKP +SFPLC+ G VFGLYK++ +GS ++ FN ++T DW++ DY Sbjct 5356 TQLYLGGMSYYCKSHKPPISFPLCANGQVFGLYKNTCVGSDNVTDFNAIATCDWTNAGDY 5415 Query 121 KLANDAKESLRLFAAETVKAKEESVKSSYAYATLKEIVGPKELLLLWESGKAKPPLNRNS 180 LAN E L+LFAAET+KA EE+ K SY AT++E++ +EL L WE GK +PPLNRN Sbjct 5416 ILANTCTERLKLFAAETLKATEETFKLSYGIATVREVLSDRELYLSWEVGKPRPPLNRNY 5475 Query 181 VFTCFQITKDSKFQVGEFVFEKVDYGSDTVTYKSTATTKLVPGMLFILTSHNVAPLRAPT 240 VFT +++TK+SK Q+GE+ FEK DYG D V Y+ T T KL G F+LTSH V PL APT Sbjct 5476 VFTGYRVTKNSKVQIGEYTFEKGDYG-DAVVYRGTTTYKLNVGDYFVLTSHTVMPLSAPT 5534 Query 241 MANQEKYSTIYKLHPSFNVSDAYANLVPYYQLIGKQRITTIQGPPGSGKSHCSIGIGVYY 300 + QE Y I L+P+ N+S+ +++ V YQ IG Q+ +T+QGPPG+GKSH +IG+ +YY Sbjct 5535 LVPQEHYVRITGLYPTLNISNEFSSNVANYQKIGMQKYSTLQGPPGTGKSHFAIGLALYY 5594 Query 301 PGARIVFTACSHAAVDSLCAKAVTAYSVDKCTRIIPARARVECYSGFKPNNNSAQYVFST 360 P ARIV+TACSHAAVD+LC KA+ +DKC+RIIPARARVEC+ FK N+ QYVF T Sbjct 5595 PSARIVYTACSHAAVDALCEKALKYLPIDKCSRIIPARARVECFDKFKVNSTLEQYVFCT 5654 Query 361 VNALPEVNADIVVVDEVSMCTNYDLSVINQRISYKHIVYVGDPQQLPAPRVLISKGVMEP 420 VNALPE ADIVV DE+SM TNYDLSV+N R+ KH VY+GDP QLPAPR L++KG +EP Sbjct 5655 VNALPETTADIVVFDEISMATNYDLSVVNARLRAKHYVYIGDPAQLPAPRTLLTKGTLEP 5714 Query 421 IDYNVVTQRMCAIGPDVFLHKCYRCPAEIVNTVSELVYENKFVPVKEASKQCFKIFERGS 480 +N V + M IGPD+FL C RCPAEIV+TVS LVY+NK KE S QCFK++ +G Sbjct 5715 EYFNSVCRLMKTIGPDMFLGTCRRCPAEIVDTVSALVYDNKLKAHKEKSAQCFKMYYKGV 5774 Query 481 VQVDNGSSINRRQLDVVKRFIHKNSTWSKAVFISPYNSQNYVAARLLGLQTQTVDSAQGS 540 + D S+INR Q+ VV+ F+ +N W KAVFISPYNSQN VA+++LGL TQTVDS+QGS Sbjct 5775 ITHDVSSAINRPQIGVVREFLTRNPAWRKAVFISPYNSQNAVASKILGLPTQTVDSSQGS 5834 Query 541 EYDYVIFAQTSDTAHACNANRFNVAITRAKKGIFCIMSDRTLFDALKF 588 EYDYVIF QT++TAH+CN NRFNVAITRAK GI CIMSDR L+D L+F Sbjct 5835 EYDYVIFTQTTETAHSCNVNRFNVAITRAKIGILCIMSDRDLYDKLQF 5882 >RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Host translation inhibitor nsp1; Short=nsp1; AltName: Full=p28; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p65; Contains: RecName: Full=Papain-like proteinase; Short=PL-PRO; AltName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=p210; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; AltName: Full=Peptide HD2; AltName: Full=p44; Contains: RecName: Full=3C-like proteinase; Short=3CL-PRO; Short=3CLp; AltName: Full=M-PRO; AltName: Full=nsp5; AltName: Full=p27; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; AltName: Full=p10; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; AltName: Full=p22; Contains: RecName: Full=Non-structural protein 9; Short=nsp9; AltName: Full=p12; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; AltName: Full=p15; Contains: RecName: Full=RNA-directed RNA polymerase; Short=Pol; Short=RdRp; AltName: Full=nsp12; AltName: Full=p100; Contains: RecName: Full=Helicase; Short=Hel; AltName: Full=nsp13; AltName: Full=p67; Contains: RecName: Full=Guanine-N7 methyltransferase; Short=ExoN; AltName: Full=nsp14; Contains: RecName: Full=Uridylate-specific endoribonuclease; AltName: Full=NendoU; AltName: Full=nsp15; AltName: Full=p35; Contains: RecName: Full=2'-O-methyltransferase; AltName: Full=nsp16 [Bovine respiratory coronavirus (strain 98TXSF-110-LUN)] Sequence ID: P0C6W8.1 Length: 7094 Range 1: 5298 to 5888 Score:735 bits(1898), Expect:0.0, Method:Compositional matrix adjust., Identities:348/593(59%), Positives:449/593(75%), Gaps:2/593(0%) Query 1 AAGLCVVCGSQTVLRCGDCLRRPMLCTKCAYDHVFGTDHKFILAITPYVCNTSGCNVNDV 60 + G CVVC SQT LRCG C+R+P+LC KC YDHV TDHK++L+++PYVCN GC+VNDV Sbjct 5298 SVGACVVCSSQTSLRCGSCIRKPLLCCKCCYDHVMATDHKYVLSVSPYVCNAPGCDVNDV 5357 Query 61 TKLYLGGLNYYCVDHKPHLSFPLCSAGNVFGLYKSSALGSMDIDVFNKLSTSDWSDIRDY 120 TKLYLGG++YYC DHKP SF L G VFGLYK S GS ID FN++++ W+D+ DY Sbjct 5358 TKLYLGGMSYYCEDHKPQYSFKLVMNGMVFGLYKQSCTGSPYIDDFNRIASCKWTDVDDY 5417 Query 121 KLANDAKESLRLFAAETVKAKEESVKSSYAYATLKEIVGPKELLLLWESGKAKPPLNRNS 180 LAN+ E L+LFAAET KA EE+ K SYA AT++EIV +EL+L WE GK KPPLN+N Sbjct 5418 ILANECTERLKLFAAETQKATEEAFKQSYASATIQEIVSERELILSWEIGKVKPPLNKNY 5477 Query 181 VFTCFQITKDSKFQVGEFVFEKVDYGSDTVTYKSTATTKLVPGMLFILTSHNVAPLRAPT 240 VFT + TK+ K +GE+VF+K + ++ V Y++T T KL G +F+LTSH+VA L APT Sbjct 5478 VFTGYHFTKNGKTVLGEYVFDKSEL-TNGVYYRATTTYKLSVGDVFVLTSHSVANLSAPT 5536 Query 241 MANQEKYSTIYKLHPSFNVSDAYANLVPYYQLIGKQRITTIQGPPGSGKSHCSIGIGVYY 300 + QE YS+I + ++V + + N V YQ IG +R T+QGPPG+GKSH +IG+ VYY Sbjct 5537 LVPQENYSSI-RFASVYSVLETFQNNVVNYQHIGMKRYCTVQGPPGTGKSHLAIGLAVYY 5595 Query 301 PGARIVFTACSHAAVDSLCAKAVTAYSVDKCTRIIPARARVECYSGFKPNNNSAQYVFST 360 AR+V+TA SHAAVD+LC KA +++ CTRI+PA+ RVECY FK N+ + +YVF+T Sbjct 5596 CTARVVYTAASHAAVDALCEKAYKFLNINDCTRIVPAKVRVECYDKFKINDTTRKYVFTT 5655 Query 361 VNALPEVNADIVVVDEVSMCTNYDLSVINQRISYKHIVYVGDPQQLPAPRVLISKGVMEP 420 +NALPE+ DIVVVDEVSM TNY+LSVIN RI KH VY+GDP QLPAPRVL+SKG +EP Sbjct 5656 INALPEMVTDIVVVDEVSMLTNYELSVINARIRAKHYVYIGDPAQLPAPRVLLSKGTLEP 5715 Query 421 IDYNVVTQRMCAIGPDVFLHKCYRCPAEIVNTVSELVYENKFVPVKEASKQCFKIFERGS 480 +N VT+ MC +GPD+FL CYRCP EIV+TVS LVYENK E+S CFK++ +G Sbjct 5716 KYFNTVTKLMCCLGPDIFLGTCYRCPKEIVDTVSALVYENKLKAKNESSSLCFKVYYKGV 5775 Query 481 VQVDNGSSINRRQLDVVKRFIHKNSTWSKAVFISPYNSQNYVAARLLGLQTQTVDSAQGS 540 ++ S++N +Q+ ++ +F+ N W KAVFISPYNSQN+ A R+LGLQTQTVDSAQGS Sbjct 5776 TTHESSSAVNMQQIYLINKFLKANPLWHKAVFISPYNSQNFAAKRVLGLQTQTVDSAQGS 5835 Query 541 EYDYVIFAQTSDTAHACNANRFNVAITRAKKGIFCIMSDRTLFDALKFFEITM 593 EYDYVI++QT++TAH+ N NRFNVAITRAKKGI C+MS+ LF+AL+F +T+ Sbjct 5836 EYDYVIYSQTAETAHSVNVNRFNVAITRAKKGILCVMSNMQLFEALQFTTLTL 5888 >RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Host translation inhibitor nsp1; Short=nsp1; AltName: Full=p28; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p65; Contains: RecName: Full=Papain-like proteinase; Short=PL-PRO; AltName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=p210; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; AltName: Full=Peptide HD2; AltName: Full=p44; Contains: RecName: Full=3C-like proteinase; Short=3CL-PRO; Short=3CLp; AltName: Full=M-PRO; AltName: Full=nsp5; AltName: Full=p27; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; AltName: Full=p10; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; AltName: Full=p22; Contains: RecName: Full=Non-structural protein 9; Short=nsp9; AltName: Full=p12; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; AltName: Full=p15; Contains: RecName: Full=RNA-directed RNA polymerase; Short=Pol; Short=RdRp; AltName: Full=nsp12; AltName: Full=p100; Contains: RecName: Full=Helicase; Short=Hel; AltName: Full=nsp13; AltName: Full=p67; Contains: RecName: Full=Guanine-N7 methyltransferase; Short=ExoN; AltName: Full=nsp14; Contains: RecName: Full=Uridylate-specific endoribonuclease; AltName: Full=NendoU; AltName: Full=nsp15; AltName: Full=p35; Contains: RecName: Full=2'-O-methyltransferase; AltName: Full=nsp16 [Bovine enteric coronavirus (strain 98TXSF-110-ENT)] Sequence ID: P0C6W7.1 Length: 7094 Range 1: 5298 to 5888 Score:735 bits(1898), Expect:0.0, Method:Compositional matrix adjust., Identities:348/593(59%), Positives:449/593(75%), Gaps:2/593(0%) Query 1 AAGLCVVCGSQTVLRCGDCLRRPMLCTKCAYDHVFGTDHKFILAITPYVCNTSGCNVNDV 60 + G CVVC SQT LRCG C+R+P+LC KC YDHV TDHK++L+++PYVCN GC+VNDV Sbjct 5298 SVGACVVCSSQTSLRCGSCIRKPLLCCKCCYDHVMATDHKYVLSVSPYVCNAPGCDVNDV 5357 Query 61 TKLYLGGLNYYCVDHKPHLSFPLCSAGNVFGLYKSSALGSMDIDVFNKLSTSDWSDIRDY 120 TKLYLGG++YYC DHKP SF L G VFGLYK S GS ID FN++++ W+D+ DY Sbjct 5358 TKLYLGGMSYYCEDHKPQYSFKLVMNGMVFGLYKQSCTGSPYIDDFNRIASCKWTDVDDY 5417 Query 121 KLANDAKESLRLFAAETVKAKEESVKSSYAYATLKEIVGPKELLLLWESGKAKPPLNRNS 180 LAN+ E L+LFAAET KA EE+ K SYA AT++EIV +EL+L WE GK KPPLN+N Sbjct 5418 ILANECTERLKLFAAETQKATEEAFKQSYASATIQEIVSERELILSWEIGKVKPPLNKNY 5477 Query 181 VFTCFQITKDSKFQVGEFVFEKVDYGSDTVTYKSTATTKLVPGMLFILTSHNVAPLRAPT 240 VFT + TK+ K +GE+VF+K + ++ V Y++T T KL G +F+LTSH+VA L APT Sbjct 5478 VFTGYHFTKNGKTVLGEYVFDKSEL-TNGVYYRATTTYKLSVGDVFVLTSHSVANLSAPT 5536 Query 241 MANQEKYSTIYKLHPSFNVSDAYANLVPYYQLIGKQRITTIQGPPGSGKSHCSIGIGVYY 300 + QE YS+I + ++V + + N V YQ IG +R T+QGPPG+GKSH +IG+ VYY Sbjct 5537 LVPQENYSSI-RFASVYSVLETFQNNVVNYQHIGMKRYCTVQGPPGTGKSHLAIGLAVYY 5595 Query 301 PGARIVFTACSHAAVDSLCAKAVTAYSVDKCTRIIPARARVECYSGFKPNNNSAQYVFST 360 AR+V+TA SHAAVD+LC KA +++ CTRI+PA+ RVECY FK N+ + +YVF+T Sbjct 5596 CTARVVYTAASHAAVDALCEKAYKFLNINDCTRIVPAKVRVECYDKFKINDTTRKYVFTT 5655 Query 361 VNALPEVNADIVVVDEVSMCTNYDLSVINQRISYKHIVYVGDPQQLPAPRVLISKGVMEP 420 +NALPE+ DIVVVDEVSM TNY+LSVIN RI KH VY+GDP QLPAPRVL+SKG +EP Sbjct 5656 INALPEMVTDIVVVDEVSMLTNYELSVINARIRAKHYVYIGDPAQLPAPRVLLSKGTLEP 5715 Query 421 IDYNVVTQRMCAIGPDVFLHKCYRCPAEIVNTVSELVYENKFVPVKEASKQCFKIFERGS 480 +N VT+ MC +GPD+FL CYRCP EIV+TVS LVYENK E+S CFK++ +G Sbjct 5716 KYFNTVTKLMCCLGPDIFLGTCYRCPKEIVDTVSALVYENKLKAKNESSSLCFKVYYKGV 5775 Query 481 VQVDNGSSINRRQLDVVKRFIHKNSTWSKAVFISPYNSQNYVAARLLGLQTQTVDSAQGS 540 ++ S++N +Q+ ++ +F+ N W KAVFISPYNSQN+ A R+LGLQTQTVDSAQGS Sbjct 5776 TTHESSSAVNMQQIYLINKFLKANPLWHKAVFISPYNSQNFAAKRVLGLQTQTVDSAQGS 5835 Query 541 EYDYVIFAQTSDTAHACNANRFNVAITRAKKGIFCIMSDRTLFDALKFFEITM 593 EYDYVI++QT++TAH+ N NRFNVAITRAKKGI C+MS+ LF+AL+F +T+ Sbjct 5836 EYDYVIYSQTAETAHSVNVNRFNVAITRAKKGILCVMSNMQLFEALQFTTLTL 5888 >RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Host translation inhibitor nsp1; Short=nsp1; AltName: Full=p28; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p65; Contains: RecName: Full=Papain-like proteinase; Short=PL-PRO; AltName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=p210; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; AltName: Full=Peptide HD2; AltName: Full=p44; Contains: RecName: Full=3C-like proteinase; Short=3CL-PRO; Short=3CLp; AltName: Full=M-PRO; AltName: Full=nsp5; AltName: Full=p27; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; AltName: Full=p10; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; AltName: Full=p22; Contains: RecName: Full=Non-structural protein 9; Short=nsp9; AltName: Full=p12; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; AltName: Full=p15; Contains: RecName: Full=RNA-directed RNA polymerase; Short=Pol; Short=RdRp; AltName: Full=nsp12; AltName: Full=p100; Contains: RecName: Full=Helicase; Short=Hel; AltName: Full=nsp13; AltName: Full=p67; Contains: RecName: Full=Guanine-N7 methyltransferase; Short=ExoN; AltName: Full=nsp14; Contains: RecName: Full=Uridylate-specific endoribonuclease; AltName: Full=NendoU; AltName: Full=nsp15; AltName: Full=p35; Contains: RecName: Full=2'-O-methyltransferase; AltName: Full=nsp16 [Bovine coronavirus strain Quebec] Sequence ID: P0C6X0.1 Length: 7059 Range 1: 5298 to 5888 Score:734 bits(1896), Expect:0.0, Method:Compositional matrix adjust., Identities:348/593(59%), Positives:449/593(75%), Gaps:2/593(0%) Query 1 AAGLCVVCGSQTVLRCGDCLRRPMLCTKCAYDHVFGTDHKFILAITPYVCNTSGCNVNDV 60 + G CVVC SQT LRCG C+R+P+LC KC YDHV TDHK++L+++PYVCN GC+VNDV Sbjct 5298 SVGACVVCSSQTSLRCGSCIRKPLLCCKCCYDHVMATDHKYVLSVSPYVCNAPGCDVNDV 5357 Query 61 TKLYLGGLNYYCVDHKPHLSFPLCSAGNVFGLYKSSALGSMDIDVFNKLSTSDWSDIRDY 120 TKLYLGG++YYC DHKP SF L G VFGLYK S GS ID FN++++ W+D+ DY Sbjct 5358 TKLYLGGMSYYCEDHKPQYSFKLVMNGMVFGLYKQSCTGSPYIDDFNRIASCKWTDVDDY 5417 Query 121 KLANDAKESLRLFAAETVKAKEESVKSSYAYATLKEIVGPKELLLLWESGKAKPPLNRNS 180 LAN+ E L+LFAAET KA EE+ K SYA AT++EIV +EL+L WE GK KPPLN+N Sbjct 5418 ILANECTERLKLFAAETQKATEEAFKQSYASATIQEIVSERELILSWEIGKVKPPLNKNY 5477 Query 181 VFTCFQITKDSKFQVGEFVFEKVDYGSDTVTYKSTATTKLVPGMLFILTSHNVAPLRAPT 240 VFT + TK+ K +GE+VF+K + ++ V Y++T T KL G +F+LTSH+VA L APT Sbjct 5478 VFTGYHFTKNGKTVLGEYVFDKSEL-TNGVYYRATTTYKLSVGDVFVLTSHSVANLSAPT 5536 Query 241 MANQEKYSTIYKLHPSFNVSDAYANLVPYYQLIGKQRITTIQGPPGSGKSHCSIGIGVYY 300 + QE YS+I + ++V + + N V YQ IG +R T+QGPPG+GKSH +IG+ VYY Sbjct 5537 LVPQENYSSI-RFASVYSVLETFQNNVVNYQHIGMKRYCTVQGPPGTGKSHLAIGLAVYY 5595 Query 301 PGARIVFTACSHAAVDSLCAKAVTAYSVDKCTRIIPARARVECYSGFKPNNNSAQYVFST 360 AR+V+TA SHAAVD+LC KA +++ CTRI+PA+ RVECY FK N+ + +YVF+T Sbjct 5596 CTARVVYTAASHAAVDALCEKAYKFLNINDCTRIVPAKVRVECYDKFKINDTTRKYVFTT 5655 Query 361 VNALPEVNADIVVVDEVSMCTNYDLSVINQRISYKHIVYVGDPQQLPAPRVLISKGVMEP 420 +NALPE+ DIVVVDEVSM TNY+LSVIN RI KH VY+GDP QLPAPRVL+SKG +EP Sbjct 5656 INALPEMVTDIVVVDEVSMLTNYELSVINARIRAKHYVYIGDPAQLPAPRVLLSKGTLEP 5715 Query 421 IDYNVVTQRMCAIGPDVFLHKCYRCPAEIVNTVSELVYENKFVPVKEASKQCFKIFERGS 480 +N VT+ MC +GPD+FL CYRCP EIV+TVS LVYENK E+S CFK++ +G Sbjct 5716 KYFNTVTKLMCCLGPDIFLGTCYRCPKEIVDTVSALVYENKLKAKNESSSLCFKVYYKGV 5775 Query 481 VQVDNGSSINRRQLDVVKRFIHKNSTWSKAVFISPYNSQNYVAARLLGLQTQTVDSAQGS 540 ++ S++N +Q+ ++ +F+ N W KAVFISPYNSQN+ A R+LGLQTQTVDSAQGS Sbjct 5776 TTHESSSAVNMQQIYLINKFLKANPLWHKAVFISPYNSQNFAAKRVLGLQTQTVDSAQGS 5835 Query 541 EYDYVIFAQTSDTAHACNANRFNVAITRAKKGIFCIMSDRTLFDALKFFEITM 593 EYDYVI++QT++TAH+ N NRFNVAITRAKKGI C+MS+ LF+AL+F +T+ Sbjct 5836 EYDYVIYSQTAETAHSVNVNRFNVAITRAKKGILCVMSNMQLFEALQFTTLTV 5888 >RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Host translation inhibitor nsp1; Short=nsp1; AltName: Full=p28; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p65; Contains: RecName: Full=Papain-like proteinase; Short=PL-PRO; AltName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=p210; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; AltName: Full=Peptide HD2; AltName: Full=p44; Contains: RecName: Full=3C-like proteinase; Short=3CL-PRO; Short=3CLp; AltName: Full=M-PRO; AltName: Full=nsp5; AltName: Full=p27; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; AltName: Full=p10; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; AltName: Full=p22; Contains: RecName: Full=Non-structural protein 9; Short=nsp9; AltName: Full=p12; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; AltName: Full=p15; Contains: RecName: Full=RNA-directed RNA polymerase; Short=Pol; Short=RdRp; AltName: Full=nsp12; AltName: Full=p100; Contains: RecName: Full=Helicase; Short=Hel; AltName: Full=nsp13; AltName: Full=p67; Contains: RecName: Full=Guanine-N7 methyltransferase; Short=ExoN; AltName: Full=nsp14; Contains: RecName: Full=Uridylate-specific endoribonuclease; AltName: Full=NendoU; AltName: Full=nsp15; AltName: Full=p35; Contains: RecName: Full=2'-O-methyltransferase; AltName: Full=nsp16 [Bovine coronavirus Mebus] Sequence ID: P0C6W9.1 Length: 7094 Range 1: 5298 to 5888 Score:734 bits(1895), Expect:0.0, Method:Compositional matrix adjust., Identities:348/593(59%), Positives:449/593(75%), Gaps:2/593(0%) Query 1 AAGLCVVCGSQTVLRCGDCLRRPMLCTKCAYDHVFGTDHKFILAITPYVCNTSGCNVNDV 60 + G CVVC SQT LRCG C+R+P+LC KC YDHV TDHK++L+++PYVCN GC+VNDV Sbjct 5298 SVGACVVCSSQTSLRCGSCIRKPLLCCKCCYDHVMATDHKYVLSVSPYVCNAPGCDVNDV 5357 Query 61 TKLYLGGLNYYCVDHKPHLSFPLCSAGNVFGLYKSSALGSMDIDVFNKLSTSDWSDIRDY 120 TKLYLGG++YYC DHKP SF L G VFGLYK S GS ID FN++++ W+D+ DY Sbjct 5358 TKLYLGGMSYYCEDHKPQYSFKLVMNGMVFGLYKQSCTGSPYIDDFNRIASCKWTDVDDY 5417 Query 121 KLANDAKESLRLFAAETVKAKEESVKSSYAYATLKEIVGPKELLLLWESGKAKPPLNRNS 180 LAN+ E L+LFAAET KA EE+ K SYA AT++EIV +EL+L WE GK KPPLN+N Sbjct 5418 ILANECTERLKLFAAETQKATEEAFKQSYASATIQEIVSERELILSWEIGKVKPPLNKNY 5477 Query 181 VFTCFQITKDSKFQVGEFVFEKVDYGSDTVTYKSTATTKLVPGMLFILTSHNVAPLRAPT 240 VFT + TK+ K +GE+VF+K + ++ V Y++T T KL G +F+LTSH+VA L APT Sbjct 5478 VFTGYHFTKNGKTVLGEYVFDKSEL-TNGVYYRATTTYKLSVGDVFVLTSHSVANLSAPT 5536 Query 241 MANQEKYSTIYKLHPSFNVSDAYANLVPYYQLIGKQRITTIQGPPGSGKSHCSIGIGVYY 300 + QE YS+I + ++V + + N V YQ IG +R T+QGPPG+GKSH +IG+ VYY Sbjct 5537 LVPQENYSSI-RFASVYSVLETFQNNVVNYQHIGMKRYCTVQGPPGTGKSHLAIGLAVYY 5595 Query 301 PGARIVFTACSHAAVDSLCAKAVTAYSVDKCTRIIPARARVECYSGFKPNNNSAQYVFST 360 AR+V+TA SHAAVD+LC KA +++ CTRI+PA+ RVECY FK N+ + +YVF+T Sbjct 5596 CTARVVYTAASHAAVDALCEKAYKFLNINDCTRIVPAKVRVECYDKFKINDTTRKYVFTT 5655 Query 361 VNALPEVNADIVVVDEVSMCTNYDLSVINQRISYKHIVYVGDPQQLPAPRVLISKGVMEP 420 +NALPE+ DIVVVDEVSM TNY+LSVIN RI KH VY+GDP QLPAPRVL+SKG +EP Sbjct 5656 INALPEMVTDIVVVDEVSMLTNYELSVINARIRAKHYVYIGDPAQLPAPRVLLSKGTLEP 5715 Query 421 IDYNVVTQRMCAIGPDVFLHKCYRCPAEIVNTVSELVYENKFVPVKEASKQCFKIFERGS 480 +N VT+ MC +GPD+FL CYRCP EIV+TVS LVYENK E+S CFK++ +G Sbjct 5716 KYFNTVTKLMCCLGPDIFLGTCYRCPKEIVDTVSALVYENKLKAKNESSSLCFKVYYKGV 5775 Query 481 VQVDNGSSINRRQLDVVKRFIHKNSTWSKAVFISPYNSQNYVAARLLGLQTQTVDSAQGS 540 ++ S++N +Q+ ++ +F+ N W KAVFISPYNSQN+ A R+LGLQTQTVDSAQGS Sbjct 5776 TTHESSSAVNMQQIYLINKFLKANPLWHKAVFISPYNSQNFAARRVLGLQTQTVDSAQGS 5835 Query 541 EYDYVIFAQTSDTAHACNANRFNVAITRAKKGIFCIMSDRTLFDALKFFEITM 593 EYDYVI++QT++TAH+ N NRFNVAITRAKKGI C+MS+ LF+AL+F +T+ Sbjct 5836 EYDYVIYSQTAETAHSVNVNRFNVAITRAKKGILCVMSNMQLFEALQFTTLTV 5888 >RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Host translation inhibitor nsp1; Short=nsp1; AltName: Full=p28; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p65; Contains: RecName: Full=Papain-like proteinase; Short=PL-PRO; AltName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=p210; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; AltName: Full=Peptide HD2; AltName: Full=p44; Contains: RecName: Full=3C-like proteinase; Short=3CL-PRO; Short=3CLp; AltName: Full=M-PRO; AltName: Full=nsp5; AltName: Full=p27; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; AltName: Full=p10; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; AltName: Full=p22; Contains: RecName: Full=Non-structural protein 9; Short=nsp9; AltName: Full=p12; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; AltName: Full=p15; Contains: RecName: Full=RNA-directed RNA polymerase; Short=Pol; Short=RdRp; AltName: Full=nsp12; AltName: Full=p100; Contains: RecName: Full=Helicase; Short=Hel; AltName: Full=nsp13; AltName: Full=p67; Contains: RecName: Full=Guanine-N7 methyltransferase; Short=ExoN; AltName: Full=nsp14; Contains: RecName: Full=Uridylate-specific endoribonuclease; AltName: Full=NendoU; AltName: Full=nsp15; AltName: Full=p35; Contains: RecName: Full=2'-O-methyltransferase; AltName: Full=nsp16 [Human coronavirus OC43] Sequence ID: P0C6X6.1 Length: 7095 Range 1: 5298 to 5888 Score:733 bits(1893), Expect:0.0, Method:Compositional matrix adjust., Identities:347/593(59%), Positives:449/593(75%), Gaps:2/593(0%) Query 1 AAGLCVVCGSQTVLRCGDCLRRPMLCTKCAYDHVFGTDHKFILAITPYVCNTSGCNVNDV 60 + G CVVC SQT LRCG C+R+P+LC KC YDHV TDHK++L+++PYVCN GC+VNDV Sbjct 5298 SVGACVVCSSQTSLRCGSCIRKPLLCCKCCYDHVMATDHKYVLSVSPYVCNAPGCDVNDV 5357 Query 61 TKLYLGGLNYYCVDHKPHLSFPLCSAGNVFGLYKSSALGSMDIDVFNKLSTSDWSDIRDY 120 TKLYLGG++YYC DHKP SF L G VFGLYK S GS ID FN++++ W+D+ DY Sbjct 5358 TKLYLGGMSYYCEDHKPQYSFKLVMNGLVFGLYKQSCTGSPYIDDFNRIASCKWTDVDDY 5417 Query 121 KLANDAKESLRLFAAETVKAKEESVKSSYAYATLKEIVGPKELLLLWESGKAKPPLNRNS 180 LAN+ E L+LFAAET KA EE+ K SYA AT++EIV +EL+L WE GK KPPLN+N Sbjct 5418 ILANECTERLKLFAAETQKATEEAFKQSYASATIQEIVSERELILSWEIGKVKPPLNKNY 5477 Query 181 VFTCFQITKDSKFQVGEFVFEKVDYGSDTVTYKSTATTKLVPGMLFILTSHNVAPLRAPT 240 VFT + TK+ K +GE+VF+K + ++ V Y++T T KL G +F+LTSH+VA L APT Sbjct 5478 VFTGYHFTKNGKTVLGEYVFDKSEL-TNGVYYRATTTYKLSVGDVFVLTSHSVANLSAPT 5536 Query 241 MANQEKYSTIYKLHPSFNVSDAYANLVPYYQLIGKQRITTIQGPPGSGKSHCSIGIGVYY 300 + QE YS+I + ++V + + N V YQ IG +R T+QGPPG+GKSH +IG+ V+Y Sbjct 5537 LVPQENYSSI-RFASVYSVLETFQNNVVNYQHIGMKRYCTVQGPPGTGKSHLAIGLAVFY 5595 Query 301 PGARIVFTACSHAAVDSLCAKAVTAYSVDKCTRIIPARARVECYSGFKPNNNSAQYVFST 360 AR+V+TA SHAAVD+LC KA +++ CTRI+PA+ RVECY FK N+ + +YVF+T Sbjct 5596 CTARVVYTAASHAAVDALCEKAYKFLNINDCTRIVPAKVRVECYDKFKINDTTRKYVFTT 5655 Query 361 VNALPEVNADIVVVDEVSMCTNYDLSVINQRISYKHIVYVGDPQQLPAPRVLISKGVMEP 420 +NALPE+ DIVVVDEVSM TNY+LSVIN RI KH VY+GDP QLPAPRVL+SKG +EP Sbjct 5656 INALPEMVTDIVVVDEVSMLTNYELSVINARIRAKHYVYIGDPAQLPAPRVLLSKGTLEP 5715 Query 421 IDYNVVTQRMCAIGPDVFLHKCYRCPAEIVNTVSELVYENKFVPVKEASKQCFKIFERGS 480 +N VT+ MC +GPD+FL CYRCP EIV+TVS LVYENK E+S CFK++ +G Sbjct 5716 KYFNTVTKLMCCLGPDIFLGTCYRCPKEIVDTVSALVYENKLKAKNESSLLCFKVYYKGV 5775 Query 481 VQVDNGSSINRRQLDVVKRFIHKNSTWSKAVFISPYNSQNYVAARLLGLQTQTVDSAQGS 540 ++ S++N +Q+ ++ +F+ N W KAVFISPYNSQN+ A R+LGLQTQTVDSAQGS Sbjct 5776 TTHESSSAVNMQQIYLINKFLKANPLWHKAVFISPYNSQNFAAKRVLGLQTQTVDSAQGS 5835 Query 541 EYDYVIFAQTSDTAHACNANRFNVAITRAKKGIFCIMSDRTLFDALKFFEITM 593 EYDYVI++QT++TAH+ N NRFNVAITRAKKGI C+MS+ LF+AL+F +T+ Sbjct 5836 EYDYVIYSQTAETAHSVNVNRFNVAITRAKKGILCVMSNMQLFEALQFTTLTL 5888 >RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Host translation inhibitor nsp1; Short=nsp1; AltName: Full=p28; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p65; Contains: RecName: Full=Papain-like proteinase; Short=PL-PRO; AltName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=p210; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; AltName: Full=Peptide HD2; AltName: Full=p44; Contains: RecName: Full=3C-like proteinase; Short=3CL-PRO; Short=3CLp; AltName: Full=M-PRO; AltName: Full=nsp5; AltName: Full=p27; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; AltName: Full=p10; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; AltName: Full=p22; Contains: RecName: Full=Non-structural protein 9; Short=nsp9; AltName: Full=p12; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; AltName: Full=p15; Contains: RecName: Full=RNA-directed RNA polymerase; Short=Pol; Short=RdRp; AltName: Full=nsp12; AltName: Full=p100; Contains: RecName: Full=Helicase; Short=Hel; AltName: Full=nsp13; AltName: Full=p67; Contains: RecName: Full=Guanine-N7 methyltransferase; Short=ExoN; AltName: Full=nsp14; Contains: RecName: Full=Uridylate-specific endoribonuclease; AltName: Full=NendoU; AltName: Full=nsp15; AltName: Full=p35; Contains: RecName: Full=2'-O-methyltransferase; AltName: Full=nsp16 [Murine hepatitis virus strain 2] Sequence ID: P0C6X8.1 Length: 7124 Range 1: 5331 to 5921 Score:726 bits(1873), Expect:0.0, Method:Compositional matrix adjust., Identities:340/593(57%), Positives:447/593(75%), Gaps:2/593(0%) Query 1 AAGLCVVCGSQTVLRCGDCLRRPMLCTKCAYDHVFGTDHKFILAITPYVCNTSGCNVNDV 60 + G CVVC SQT LRCG C+R+P+LC KCAYDHV TDHK++L+++PYVCN+ GC+VNDV Sbjct 5331 SVGACVVCSSQTSLRCGSCIRKPLLCCKCAYDHVMSTDHKYVLSVSPYVCNSPGCDVNDV 5390 Query 61 TKLYLGGLNYYCVDHKPHLSFPLCSAGNVFGLYKSSALGSMDIDVFNKLSTSDWSDIRDY 120 TKLYLGG++YYC DHKP SF L G VFGLYK S GS I+ FNK+++ W+++ DY Sbjct 5391 TKLYLGGMSYYCEDHKPQYSFKLVMNGMVFGLYKQSCTGSPYIEDFNKIASCKWTEVDDY 5450 Query 121 KLANDAKESLRLFAAETVKAKEESVKSSYAYATLKEIVGPKELLLLWESGKAKPPLNRNS 180 LAN+ E L+LFAAET KA EES K YA AT++EIV +EL+L WE GK +PPLN+N Sbjct 5451 VLANECTERLKLFAAETQKATEESFKQCYASATIREIVSDRELILSWEIGKVRPPLNKNY 5510 Query 181 VFTCFQITKDSKFQVGEFVFEKVDYGSDTVTYKSTATTKLVPGMLFILTSHNVAPLRAPT 240 VFT + T + K +GE+VF+K + ++ V Y++T T KL G +FILTSH V+ L APT Sbjct 5511 VFTGYHFTSNGKTVLGEYVFDKSEL-TNGVYYRATTTYKLSVGDVFILTSHAVSSLSAPT 5569 Query 241 MANQEKYSTIYKLHPSFNVSDAYANLVPYYQLIGKQRITTIQGPPGSGKSHCSIGIGVYY 300 + QE Y++I + ++V + + N VP YQ IG +R T+QGPPG+GKSH +IG+ VYY Sbjct 5570 LVPQENYTSI-RFASVYSVPETFQNNVPNYQHIGMKRYCTVQGPPGTGKSHLAIGLAVYY 5628 Query 301 PGARIVFTACSHAAVDSLCAKAVTAYSVDKCTRIIPARARVECYSGFKPNNNSAQYVFST 360 AR+V+TA SHAAVD+LC KA +++ CTRI+PA+ RV+CY FK N+ + +YVF+T Sbjct 5629 CTARVVYTAASHAAVDALCEKAYKFLNINDCTRIVPAKVRVDCYDKFKVNDTTRKYVFTT 5688 Query 361 VNALPEVNADIVVVDEVSMCTNYDLSVINQRISYKHIVYVGDPQQLPAPRVLISKGVMEP 420 +NALPE+ DI+VVDEVSM TNY+LSVIN R+ KH VY+GDP QLPAPRVL++KG +EP Sbjct 5689 INALPELVTDIIVVDEVSMLTNYELSVINSRVRAKHYVYIGDPAQLPAPRVLLNKGTLEP 5748 Query 421 IDYNVVTQRMCAIGPDVFLHKCYRCPAEIVNTVSELVYENKFVPVKEASKQCFKIFERGS 480 +N VT+ MC +GPD+FL CYRCP EIV+TVS LVY NK + S CFK++ +G Sbjct 5749 RYFNSVTKLMCCLGPDIFLGTCYRCPKEIVDTVSALVYHNKLKAKNDNSSMCFKVYYKGQ 5808 Query 481 VQVDNGSSINRRQLDVVKRFIHKNSTWSKAVFISPYNSQNYVAARLLGLQTQTVDSAQGS 540 ++ S++N +Q+ ++ +F+ N +WS AVFISPYNSQNYVA R+LGLQTQTVDSAQGS Sbjct 5809 TTHESSSAVNMQQIYLISKFLKANPSWSNAVFISPYNSQNYVAKRVLGLQTQTVDSAQGS 5868 Query 541 EYDYVIFAQTSDTAHACNANRFNVAITRAKKGIFCIMSDRTLFDALKFFEITM 593 EYD+VI++QT++TAH+ N NRFNVAITRAKKGI C+MS LF++L F +T+ Sbjct 5869 EYDFVIYSQTAETAHSVNVNRFNVAITRAKKGILCVMSSMQLFESLNFSTLTL 5921 >RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Host translation inhibitor nsp1; Short=nsp1; AltName: Full=p28; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p65; Contains: RecName: Full=Papain-like proteinase; Short=PL-PRO; AltName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=p210; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; AltName: Full=Peptide HD2; AltName: Full=p44; Contains: RecName: Full=3C-like proteinase; Short=3CL-PRO; Short=3CLp; AltName: Full=M-PRO; AltName: Full=nsp5; AltName: Full=p27; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; AltName: Full=p10; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; AltName: Full=p22; Contains: RecName: Full=Non-structural protein 9; Short=nsp9; AltName: Full=p12; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; AltName: Full=p15; Contains: RecName: Full=RNA-directed RNA polymerase; Short=Pol; Short=RdRp; AltName: Full=nsp12; AltName: Full=p100; Contains: RecName: Full=Helicase; Short=Hel; AltName: Full=nsp13; AltName: Full=p67; Contains: RecName: Full=Guanine-N7 methyltransferase; Short=ExoN; AltName: Full=nsp14; Contains: RecName: Full=Uridylate-specific endoribonuclease nsp15; AltName: Full=NendoU; AltName: Full=nsp15; AltName: Full=p35; Contains: RecName: Full=2'-O-methyltransferase; AltName: Full=nsp16 [Murine hepatitis virus strain A59] Sequence ID: P0C6X9.1 Length: 7176 Range 1: 5383 to 5973 Score:725 bits(1871), Expect:0.0, Method:Compositional matrix adjust., Identities:339/593(57%), Positives:447/593(75%), Gaps:2/593(0%) Query 1 AAGLCVVCGSQTVLRCGDCLRRPMLCTKCAYDHVFGTDHKFILAITPYVCNTSGCNVNDV 60 + G CVVC SQT LRCG C+R+P+LC KCAYDHV TDHK++L+++PYVCN+ GC+VNDV Sbjct 5383 SVGACVVCSSQTSLRCGSCIRKPLLCCKCAYDHVMSTDHKYVLSVSPYVCNSPGCDVNDV 5442 Query 61 TKLYLGGLNYYCVDHKPHLSFPLCSAGNVFGLYKSSALGSMDIDVFNKLSTSDWSDIRDY 120 TKLYLGG++YYC DHKP SF L G VFGLYK S GS I+ FNK+++ W+++ DY Sbjct 5443 TKLYLGGMSYYCEDHKPQYSFKLVMNGMVFGLYKQSCTGSPYIEDFNKIASCKWTEVDDY 5502 Query 121 KLANDAKESLRLFAAETVKAKEESVKSSYAYATLKEIVGPKELLLLWESGKAKPPLNRNS 180 LAN+ E L+LFAAET KA EE+ K YA AT++EIV +EL+L WE GK +PPLN+N Sbjct 5503 VLANECTERLKLFAAETQKATEEAFKQCYASATIREIVSDRELILSWEIGKVRPPLNKNY 5562 Query 181 VFTCFQITKDSKFQVGEFVFEKVDYGSDTVTYKSTATTKLVPGMLFILTSHNVAPLRAPT 240 VFT + T + K +GE+VF+K + ++ V Y++T T KL G +FILTSH V+ L APT Sbjct 5563 VFTGYHFTNNGKTVLGEYVFDKSEL-TNGVYYRATTTYKLSVGDVFILTSHAVSSLSAPT 5621 Query 241 MANQEKYSTIYKLHPSFNVSDAYANLVPYYQLIGKQRITTIQGPPGSGKSHCSIGIGVYY 300 + QE Y++I + ++V + + N VP YQ IG +R T+QGPPG+GKSH +IG+ VYY Sbjct 5622 LVPQENYTSI-RFASVYSVPETFQNNVPNYQHIGMKRYCTVQGPPGTGKSHLAIGLAVYY 5680 Query 301 PGARIVFTACSHAAVDSLCAKAVTAYSVDKCTRIIPARARVECYSGFKPNNNSAQYVFST 360 AR+V+TA SHAAVD+LC KA +++ CTRI+PA+ RV+CY FK N+ + +YVF+T Sbjct 5681 CTARVVYTAASHAAVDALCEKAHKFLNINDCTRIVPAKVRVDCYDKFKVNDTTRKYVFTT 5740 Query 361 VNALPEVNADIVVVDEVSMCTNYDLSVINQRISYKHIVYVGDPQQLPAPRVLISKGVMEP 420 +NALPE+ DI+VVDEVSM TNY+LSVIN R+ KH VY+GDP QLPAPRVL++KG +EP Sbjct 5741 INALPELVTDIIVVDEVSMLTNYELSVINSRVRAKHYVYIGDPAQLPAPRVLLNKGTLEP 5800 Query 421 IDYNVVTQRMCAIGPDVFLHKCYRCPAEIVNTVSELVYENKFVPVKEASKQCFKIFERGS 480 +N VT+ MC +GPD+FL CYRCP EIV+TVS LVY NK + S CFK++ +G Sbjct 5801 RYFNSVTKLMCCLGPDIFLGTCYRCPKEIVDTVSALVYNNKLKAKNDNSSMCFKVYYKGQ 5860 Query 481 VQVDNGSSINRRQLDVVKRFIHKNSTWSKAVFISPYNSQNYVAARLLGLQTQTVDSAQGS 540 ++ S++N +Q+ ++ +F+ N +WS AVFISPYNSQNYVA R+LGLQTQTVDSAQGS Sbjct 5861 TTHESSSAVNMQQIHLISKFLKANPSWSNAVFISPYNSQNYVAKRVLGLQTQTVDSAQGS 5920 Query 541 EYDYVIFAQTSDTAHACNANRFNVAITRAKKGIFCIMSDRTLFDALKFFEITM 593 EYD+VI++QT++TAH+ N NRFNVAITRAKKGI C+MS LF++L F +T+ Sbjct 5921 EYDFVIYSQTAETAHSVNVNRFNVAITRAKKGILCVMSSMQLFESLNFTTLTL 5973 >RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Host translation inhibitor nsp1; Short=nsp1; AltName: Full=p28; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p65; Contains: RecName: Full=Papain-like proteinase; Short=PL-PRO; AltName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=p210; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; AltName: Full=Peptide HD2; AltName: Full=p44; Contains: RecName: Full=3C-like proteinase; Short=3CL-PRO; Short=3CLp; AltName: Full=M-PRO; AltName: Full=nsp5; AltName: Full=p27; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; AltName: Full=p10; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; AltName: Full=p22; Contains: RecName: Full=Non-structural protein 9; Short=nsp9; AltName: Full=p12; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; AltName: Full=p15; Contains: RecName: Full=RNA-directed RNA polymerase; Short=Pol; Short=RdRp; AltName: Full=nsp12; AltName: Full=p100; Contains: RecName: Full=Helicase; Short=Hel; AltName: Full=nsp13; AltName: Full=p67; Contains: RecName: Full=Guanine-N7 methyltransferase; Short=ExoN; AltName: Full=nsp14; Contains: RecName: Full=Uridylate-specific endoribonuclease; AltName: Full=NendoU; AltName: Full=nsp15; AltName: Full=p35; Contains: RecName: Full=2'-O-methyltransferase; AltName: Full=nsp16 [Human coronavirus HKU1 (isolate N5)] Sequence ID: P0C6X4.1 Length: 7132 Range 1: 5336 to 5930 Score:719 bits(1856), Expect:0.0, Method:Compositional matrix adjust., Identities:339/597(57%), Positives:447/597(74%), Gaps:2/597(0%) Query 1 AAGLCVVCGSQTVLRCGDCLRRPMLCTKCAYDHVFGTDHKFILAITPYVCNTSGCNVNDV 60 + G CVVC SQT LRCG C+R+P+LC KC YDHV T+HK++L+++PYVCN C+V+DV Sbjct 5336 SVGACVVCSSQTSLRCGSCIRKPLLCCKCCYDHVMATNHKYVLSVSPYVCNAPNCDVSDV 5395 Query 61 TKLYLGGLNYYCVDHKPHLSFPLCSAGNVFGLYKSSALGSMDIDVFNKLSTSDWSDIRDY 120 TKLYLGG++YYC +HKPH SF L G VFGLYK S GS ID FNK+++ W+++ DY Sbjct 5396 TKLYLGGMSYYCENHKPHYSFKLVMNGMVFGLYKQSCTGSPYIDDFNKIASCKWTEVDDY 5455 Query 121 KLANDAKESLRLFAAETVKAKEESVKSSYAYATLKEIVGPKELLLLWESGKAKPPLNRNS 180 LAN+ E L+LFAAET KA EE+ K SYA AT++EIV +E++L WE+GK KPPLN+N Sbjct 5456 VLANECIERLKLFAAETQKATEEAFKQSYASATIQEIVSDREVILCWETGKVKPPLNKNY 5515 Query 181 VFTCFQITKDSKFQVGEFVFEKVDYGSDTVTYKSTATTKLVPGMLFILTSHNVAPLRAPT 240 VFT + T K +GE+VF+K + ++ V Y++T T KL G +F+LTSH+VA L APT Sbjct 5516 VFTGYHFTSTGKTVLGEYVFDKSEL-TNGVYYRATTTYKLSIGDVFVLTSHSVASLSAPT 5574 Query 241 MANQEKYSTIYKLHPSFNVSDAYANLVPYYQLIGKQRITTIQGPPGSGKSHCSIGIGVYY 300 + QE Y++I + ++V + N V YQ IG +R T+QGPPG+GKSH +IG+ VYY Sbjct 5575 LVPQENYASI-RFSSVYSVPLVFQNNVANYQHIGMKRYCTVQGPPGTGKSHLAIGLAVYY 5633 Query 301 PGARIVFTACSHAAVDSLCAKAVTAYSVDKCTRIIPARARVECYSGFKPNNNSAQYVFST 360 AR+V+TA SHAAVD+LC KA +++ CTRIIPA+ RV+CY FK N+ + +YVF+T Sbjct 5634 YTARVVYTAASHAAVDALCEKAYKFLNINDCTRIIPAKVRVDCYDKFKINDTTCKYVFTT 5693 Query 361 VNALPEVNADIVVVDEVSMCTNYDLSVINQRISYKHIVYVGDPQQLPAPRVLISKGVMEP 420 +NALPE+ DIVVVDEVSM TNY+LSVIN RI KH VY+GDP QLPAPRVL+SKG +EP Sbjct 5694 INALPELVTDIVVVDEVSMLTNYELSVINARIKAKHYVYIGDPAQLPAPRVLLSKGSLEP 5753 Query 421 IDYNVVTQRMCAIGPDVFLHKCYRCPAEIVNTVSELVYENKFVPVKEASKQCFKIFERGS 480 +N +T+ MC +GPD+FL CYRCP EIV TVS LVY+NK + S CFK++ +G Sbjct 5754 RHFNSITKIMCCLGPDIFLGNCYRCPKEIVETVSALVYDNKLKAKNDNSSLCFKVYFKGQ 5813 Query 481 VQVDNGSSINRRQLDVVKRFIHKNSTWSKAVFISPYNSQNYVAARLLGLQTQTVDSAQGS 540 ++ S++N +Q+ ++ +F+ N W+ AVFISPYNSQNYVA R+LG+QTQTVDSAQGS Sbjct 5814 TTHESSSAVNIQQIYLISKFLKANPVWNSAVFISPYNSQNYVAKRVLGVQTQTVDSAQGS 5873 Query 541 EYDYVIFAQTSDTAHACNANRFNVAITRAKKGIFCIMSDRTLFDALKFFEITMTDLQ 597 EYDYVI++QT++TAH+ N NRFNVAITRAKKGIFC+MS+ LF++L F + + +Q Sbjct 5874 EYDYVIYSQTAETAHSVNVNRFNVAITRAKKGIFCVMSNMQLFESLNFITLPLDKIQ 5930 >RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Host translation inhibitor nsp1; Short=nsp1; AltName: Full=p28; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p65; Contains: RecName: Full=Papain-like proteinase; Short=PL-PRO; AltName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=p210; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; AltName: Full=Peptide HD2; AltName: Full=p44; Contains: RecName: Full=3C-like proteinase; Short=3CL-PRO; Short=3CLp; AltName: Full=M-PRO; AltName: Full=nsp5; AltName: Full=p27; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; AltName: Full=p10; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; AltName: Full=p22; Contains: RecName: Full=Non-structural protein 9; Short=nsp9; AltName: Full=p12; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; AltName: Full=p15; Contains: RecName: Full=RNA-directed RNA polymerase; Short=Pol; Short=RdRp; AltName: Full=nsp12; AltName: Full=p100; Contains: RecName: Full=Helicase; Short=Hel; AltName: Full=nsp13; AltName: Full=p67; Contains: RecName: Full=Guanine-N7 methyltransferase; Short=ExoN; AltName: Full=nsp14; Contains: RecName: Full=Uridylate-specific endoribonuclease; AltName: Full=NendoU; AltName: Full=nsp15; AltName: Full=p35; Contains: RecName: Full=2'-O-methyltransferase; AltName: Full=nsp16 [Human coronavirus HKU1 (isolate N1)] Sequence ID: P0C6X2.1 Length: 7182 Range 1: 5386 to 5980 Score:718 bits(1854), Expect:0.0, Method:Compositional matrix adjust., Identities:339/597(57%), Positives:447/597(74%), Gaps:2/597(0%) Query 1 AAGLCVVCGSQTVLRCGDCLRRPMLCTKCAYDHVFGTDHKFILAITPYVCNTSGCNVNDV 60 + G CVVC SQT LRCG C+R+P+LC KC YDHV T+HK++L+++PYVCN C+V+DV Sbjct 5386 SVGACVVCSSQTSLRCGSCIRKPLLCCKCCYDHVMATNHKYVLSVSPYVCNAPNCDVSDV 5445 Query 61 TKLYLGGLNYYCVDHKPHLSFPLCSAGNVFGLYKSSALGSMDIDVFNKLSTSDWSDIRDY 120 TKLYLGG++YYC +HKPH SF L G VFGLYK S GS ID FNK+++ W+++ DY Sbjct 5446 TKLYLGGMSYYCENHKPHYSFKLVMNGMVFGLYKQSCTGSPYIDDFNKIASCKWTEVDDY 5505 Query 121 KLANDAKESLRLFAAETVKAKEESVKSSYAYATLKEIVGPKELLLLWESGKAKPPLNRNS 180 LAN+ E L+LFAAET KA EE+ K SYA AT++EIV +E++L WE+GK KPPLN+N Sbjct 5506 VLANECIERLKLFAAETQKATEEAFKQSYASATIQEIVSDREVILCWETGKVKPPLNKNY 5565 Query 181 VFTCFQITKDSKFQVGEFVFEKVDYGSDTVTYKSTATTKLVPGMLFILTSHNVAPLRAPT 240 VFT + T K +GE+VF+K + ++ V Y++T T KL G +F+LTSH+VA L APT Sbjct 5566 VFTGYHFTSTGKTVLGEYVFDKSEL-TNGVYYRATTTYKLSIGDVFVLTSHSVASLSAPT 5624 Query 241 MANQEKYSTIYKLHPSFNVSDAYANLVPYYQLIGKQRITTIQGPPGSGKSHCSIGIGVYY 300 + QE Y++I + ++V + N V YQ IG +R T+QGPPG+GKSH +IG+ VYY Sbjct 5625 LVPQENYASI-RFSSVYSVPLVFQNNVANYQHIGMKRYCTVQGPPGTGKSHLAIGLAVYY 5683 Query 301 PGARIVFTACSHAAVDSLCAKAVTAYSVDKCTRIIPARARVECYSGFKPNNNSAQYVFST 360 AR+V+TA SHAAVD+LC KA +++ CTRIIPA+ RV+CY FK N+ + +YVF+T Sbjct 5684 YTARVVYTAASHAAVDALCEKAYKFLNINDCTRIIPAKVRVDCYDKFKINDTTCKYVFTT 5743 Query 361 VNALPEVNADIVVVDEVSMCTNYDLSVINQRISYKHIVYVGDPQQLPAPRVLISKGVMEP 420 +NALPE+ DIVVVDEVSM TNY+LSVIN RI KH VY+GDP QLPAPRVL+SKG +EP Sbjct 5744 INALPELVTDIVVVDEVSMLTNYELSVINARIKAKHYVYIGDPAQLPAPRVLLSKGSLEP 5803 Query 421 IDYNVVTQRMCAIGPDVFLHKCYRCPAEIVNTVSELVYENKFVPVKEASKQCFKIFERGS 480 +N +T+ MC +GPD+FL CYRCP EIV TVS LVY+NK + S CFK++ +G Sbjct 5804 RHFNSITKIMCCLGPDIFLGNCYRCPKEIVETVSALVYDNKLKAKNDNSSLCFKVYFKGQ 5863 Query 481 VQVDNGSSINRRQLDVVKRFIHKNSTWSKAVFISPYNSQNYVAARLLGLQTQTVDSAQGS 540 ++ S++N +Q+ ++ +F+ N W+ AVFISPYNSQNYVA R+LG+QTQTVDSAQGS Sbjct 5864 TTHESSSAVNIQQIYLISKFLKANPVWNSAVFISPYNSQNYVAKRVLGVQTQTVDSAQGS 5923 Query 541 EYDYVIFAQTSDTAHACNANRFNVAITRAKKGIFCIMSDRTLFDALKFFEITMTDLQ 597 EYDYVI++QT++TAH+ N NRFNVAITRAKKGIFC+MS+ LF++L F + + +Q Sbjct 5924 EYDYVIYSQTAETAHSVNVNRFNVAITRAKKGIFCVMSNMQLFESLNFITLPLDKIQ 5980 >RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Host translation inhibitor nsp1; Short=nsp1; AltName: Full=p28; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p65; Contains: RecName: Full=Papain-like proteinase; Short=PL-PRO; AltName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=p210; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; AltName: Full=Peptide HD2; AltName: Full=p44; Contains: RecName: Full=3C-like proteinase; Short=3CL-PRO; Short=3CLp; AltName: Full=M-PRO; AltName: Full=nsp5; AltName: Full=p27; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; AltName: Full=p10; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; AltName: Full=p22; Contains: RecName: Full=Non-structural protein 9; Short=nsp9; AltName: Full=p12; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; AltName: Full=p15; Contains: RecName: Full=RNA-directed RNA polymerase; Short=Pol; Short=RdRp; AltName: Full=nsp12; AltName: Full=p100; Contains: RecName: Full=Helicase; Short=Hel; AltName: Full=nsp13; AltName: Full=p67; Contains: RecName: Full=Guanine-N7 methyltransferase; Short=ExoN; AltName: Full=nsp14; Contains: RecName: Full=Uridylate-specific endoribonuclease; AltName: Full=NendoU; AltName: Full=nsp15; AltName: Full=p35; Contains: RecName: Full=2'-O-methyltransferase; AltName: Full=nsp16 [Human coronavirus HKU1 (isolate N2)] Sequence ID: P0C6X3.1 Length: 7152 Range 1: 5356 to 5950 Score:716 bits(1847), Expect:0.0, Method:Compositional matrix adjust., Identities:337/597(56%), Positives:446/597(74%), Gaps:2/597(0%) Query 1 AAGLCVVCGSQTVLRCGDCLRRPMLCTKCAYDHVFGTDHKFILAITPYVCNTSGCNVNDV 60 + G CVVC SQT LRCG C+R+P+LC KC YDHV T+HK++L+++PYVCN C+V+DV Sbjct 5356 SVGACVVCSSQTSLRCGSCIRKPLLCCKCCYDHVMATNHKYVLSVSPYVCNAPNCDVSDV 5415 Query 61 TKLYLGGLNYYCVDHKPHLSFPLCSAGNVFGLYKSSALGSMDIDVFNKLSTSDWSDIRDY 120 TKLYLGG++YYC +HKPH SF L G VFGLYK S GS ID FNK+++ W+++ DY Sbjct 5416 TKLYLGGMSYYCENHKPHYSFKLVMNGMVFGLYKQSCTGSPYIDDFNKIASCKWTEVDDY 5475 Query 121 KLANDAKESLRLFAAETVKAKEESVKSSYAYATLKEIVGPKELLLLWESGKAKPPLNRNS 180 LAN+ E L+LFAAET KA EE+ K SYA AT++EIV +E++L WE+GK KPPLN+N Sbjct 5476 VLANECIERLKLFAAETQKATEEAFKQSYASATIQEIVSDREIILCWETGKVKPPLNKNY 5535 Query 181 VFTCFQITKDSKFQVGEFVFEKVDYGSDTVTYKSTATTKLVPGMLFILTSHNVAPLRAPT 240 VFT + T K +GE+VF+K + ++ V Y++T T KL G +F+LTSH+VA L APT Sbjct 5536 VFTGYHFTSTGKTVLGEYVFDKSEL-TNGVYYRATTTYKLSIGDVFVLTSHSVANLSAPT 5594 Query 241 MANQEKYSTIYKLHPSFNVSDAYANLVPYYQLIGKQRITTIQGPPGSGKSHCSIGIGVYY 300 + QE Y++I + ++V + V YQ IG +R T+QGPPG+GKSH +IG+ VYY Sbjct 5595 LVPQENYASI-RFSSVYSVPLLFQTNVANYQHIGMKRYCTVQGPPGTGKSHLAIGLAVYY 5653 Query 301 PGARIVFTACSHAAVDSLCAKAVTAYSVDKCTRIIPARARVECYSGFKPNNNSAQYVFST 360 AR+V+TA SHAAVD+LC KA +++ CTRIIPA+ RV+CY FK N+ + +YVF+T Sbjct 5654 YTARVVYTAASHAAVDALCEKAYKFLNINDCTRIIPAKVRVDCYDKFKINDTTCKYVFTT 5713 Query 361 VNALPEVNADIVVVDEVSMCTNYDLSVINQRISYKHIVYVGDPQQLPAPRVLISKGVMEP 420 +NALPE+ DIVVVDEVSM TNY+LSVIN R+ KH VY+GDP QLPAPRVL+SKG +EP Sbjct 5714 INALPELVTDIVVVDEVSMLTNYELSVINARVKAKHYVYIGDPAQLPAPRVLLSKGSLEP 5773 Query 421 IDYNVVTQRMCAIGPDVFLHKCYRCPAEIVNTVSELVYENKFVPVKEASKQCFKIFERGS 480 +N +T+ MC +GPD+FL CYRCP EIV TVS LVY+NK + S CFK++ +G Sbjct 5774 RHFNSITKIMCCLGPDIFLGNCYRCPKEIVETVSALVYDNKLKAKNDNSSLCFKVYFKGQ 5833 Query 481 VQVDNGSSINRRQLDVVKRFIHKNSTWSKAVFISPYNSQNYVAARLLGLQTQTVDSAQGS 540 ++ S++N +Q+ ++ +F+ N W+ AVFISPYNSQNYVA R+LG+QTQTVDSAQGS Sbjct 5834 TTHESSSAVNIQQIYLISKFLKANPVWNSAVFISPYNSQNYVAKRILGVQTQTVDSAQGS 5893 Query 541 EYDYVIFAQTSDTAHACNANRFNVAITRAKKGIFCIMSDRTLFDALKFFEITMTDLQ 597 EYDYVI++QT++TAH+ N NRFNVAITRAKKGIFC+MS+ LF++L F + + +Q Sbjct 5894 EYDYVIYSQTAETAHSINVNRFNVAITRAKKGIFCVMSNMQLFESLNFITLPLDKIQ 5950 >RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Host translation inhibitor nsp1; Short=nsp1; AltName: Full=p28; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p65; Contains: RecName: Full=Papain-like proteinase; Short=PL-PRO; AltName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=p210; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; AltName: Full=Peptide HD2; AltName: Full=p44; Contains: RecName: Full=3C-like proteinase; Short=3CL-PRO; Short=3CLp; AltName: Full=M-PRO; AltName: Full=nsp5; AltName: Full=p27; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; AltName: Full=p10; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; AltName: Full=p22; Contains: RecName: Full=Non-structural protein 9; Short=nsp9; AltName: Full=p12; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; AltName: Full=p15; Contains: RecName: Full=RNA-directed RNA polymerase; Short=Pol; Short=RdRp; AltName: Full=nsp12; AltName: Full=p100; Contains: RecName: Full=Helicase; Short=Hel; AltName: Full=nsp13; AltName: Full=p67; Contains: RecName: Full=Guanine-N7 methyltransferase; Short=ExoN; AltName: Full=nsp14; Contains: RecName: Full=Uridylate-specific endoribonuclease; AltName: Full=NendoU; AltName: Full=nsp15; AltName: Full=p35; Contains: RecName: Full=2'-O-methyl transferase; AltName: Full=nsp16 [Murine hepatitis virus strain JHM] Sequence ID: P0C6Y0.1 Length: 7180 Range 1: 5389 to 5979 Score:702 bits(1812), Expect:0.0, Method:Compositional matrix adjust., Identities:330/593(56%), Positives:436/593(73%), Gaps:2/593(0%) Query 1 AAGLCVVCGSQTVLRCGDCLRRPMLCTKCAYDHVFGTDHKFILAITPYVCNTSGCNVNDV 60 + G CVVC SQT LRCG C+R+P+LC KCAYDHV TDHK++L+++PYVCN+ GC+VNDV Sbjct 5389 SVGACVVCSSQTSLRCGSCIRKPLLCCKCAYDHVMSTDHKYVLSVSPYVCNSPGCDVNDV 5448 Query 61 TKLYLGGLNYYCVDHKPHLSFPLCSAGNVFGLYKSSALGSMDIDVFNKLSTSDWSDIRDY 120 TKLYLGG++YYC HKP SF L G VFGLYK S GS I+ FNK+++ W+++ DY Sbjct 5449 TKLYLGGMSYYCEAHKPQYSFKLVMNGMVFGLYKQSCTGSPYIEDFNKIASCKWTEVDDY 5508 Query 121 KLANDAKESLRLFAAETVKAKEESVKSSYAYATLKEIVGPKELLLLWESGKAKPPLNRNS 180 LAN+ E L+LFAAET KA EE+ K YA AT++EIV +EL+L WE GK +PPLN+N Sbjct 5509 VLANECTERLKLFAAETQKATEEAFKQCYASATIREIVSDRELILSWEIGKVRPPLNKNY 5568 Query 181 VFTCFQITKDSKFQVGEFVFEKVDYGSDTVTYKSTATTKLVPGMLFILTSHNVAPLRAPT 240 VFT + T + K +GE+VF+K + ++ V Y++T T KL G +FILTSH V+ L APT Sbjct 5569 VFTGYHFTNNGKTVLGEYVFDKSEL-TNGVYYRATTTYKLSVGDVFILTSHAVSSLSAPT 5627 Query 241 MANQEKYSTIYKLHPSFNVSDAYANLVPYYQLIGKQRITTIQGPPGSGKSHCSIGIGVYY 300 + QE Y+++ + +++V + + N VP YQ IG +R T+QGPPG+GKSH +IG VYY Sbjct 5628 LVPQENYTSV-RFASAYSVPETFQNNVPNYQHIGIKRYCTVQGPPGTGKSHLAIGHAVYY 5686 Query 301 PGARIVFTACSHAAVDSLCAKAVTAYSVDKCTRIIPARARVECYSGFKPNNNSAQYVFST 360 AR+V+TA SHAAVD+LC KA +++ C RI+PA+ RV+CY F N+ + +YVF+T Sbjct 5687 CTARVVYTAASHAAVDALCEKAHKFLNINDCARIVPAKLRVDCYDKFNVNDTTRKYVFTT 5746 Query 361 VNALPEVNADIVVVDEVSMCTNYDLSVINQRISYKHIVYVGDPQQLPAPRVLISKGVMEP 420 +NALPE+ DI+VVDEVSM TNY+LSVIN R+ KH VY+GDP QLPAPRVL++KG +EP Sbjct 5747 INALPELVTDIIVVDEVSMLTNYELSVINSRVRAKHYVYIGDPAQLPAPRVLLNKGTLEP 5806 Query 421 IDYNVVTQRMCAIGPDVFLHKCYRCPAEIVNTVSELVYENKFVPVKEASKQCFKIFERGS 480 +N VT+ MC +GPD+FL CYRCP EIV+TVS LVY NK + S CFK++ +G Sbjct 5807 RYFNSVTKLMCCLGPDIFLGTCYRCPKEIVDTVSALVYNNKLKAKNDNSAMCFKVYYKGQ 5866 Query 481 VQVDNGSSINRRQLDVVKRFIHKNSTWSKAVFISPYNSQNYVAARLLGLQTQTVDSAQGS 540 ++ S++N +Q+ ++ + + N +WS AVFISPYNSQNYVA R+LGLQTQT DSAQGS Sbjct 5867 TTHESSSAVNMQQIHLISKLLKANPSWSNAVFISPYNSQNYVAKRVLGLQTQTADSAQGS 5926 Query 541 EYDYVIFAQTSDTAHACNANRFNVAITRAKKGIFCIMSDRTLFDALKFFEITM 593 YD+VI++QT+ TAH+ N NRFNVAITRAKKGI C+MS L F +T+ Sbjct 5927 AYDFVIYSQTAQTAHSVNVNRFNVAITRAKKGILCVMSSMQLIGVFNFTTLTL 5979 >RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p87; Contains: RecName: Full=Papain-like protease; Short=PL-PRO; AltName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=p195; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; AltName: Full=Peptide HD2; AltName: Full=p41; Contains: RecName: Full=3C-like proteinase; Short=3CL-PRO; Short=3CLp; AltName: Full=Main protease; Short=Mpro; AltName: Full=Non-structural protein 5; Short=nsp5; AltName: Full=p33; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; AltName: Full=p34; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; AltName: Full=p9; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; AltName: Full=p24; Contains: RecName: Full=Non-structural protein 9; Short=nsp9; AltName: Full=p10; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; AltName: Full=p16; Contains: RecName: Full=RNA-directed RNA polymerase; Short=Pol; Short=RdRp; AltName: Full=nsp12; AltName: Full=p100; Contains: RecName: Full=Helicase; Short=Hel; AltName: Full=nsp13; AltName: Full=p68; Contains: RecName: Full=Proofreading exoribonuclease; Short=ExoN; AltName: Full=Guanine-N7 methyltransferase; AltName: Full=Non-structural protein 14; Short=nsp14; AltName: Full=p58; Contains: RecName: Full=Uridylate-specific endoribonuclease; AltName: Full=NendoU; AltName: Full=Non-structural protein 15; Short=nsp15; AltName: Full=p39; Contains: RecName: Full=2'-O-methyl transferase; AltName: Full=Non-structural protein 16; Short=nsp16; AltName: Full=p35 [Avian infectious bronchitis virus (strain Beaudette)] Sequence ID: P0C6Y1.1 Length: 6629 Range 1: 4869 to 5468 Score:698 bits(1801), Expect:0.0, Method:Compositional matrix adjust., Identities:336/602(56%), Positives:439/602(72%), Gaps:7/602(1%) Query 1 AAGLCVVCGSQTVLRCGDCLRRPMLCTKCAYDHVFGTDHKFILAITPYVCNTSGCNVNDV 60 + G+CVVC SQT+LRCG+C+R+P LC KC YDHV TDHK +L+I PY+C+ GC DV Sbjct 4869 SCGVCVVCNSQTILRCGNCIRKPFLCCKCCYDHVMHTDHKNVLSINPYICSQLGCGEADV 4928 Query 61 TKLYLGGLNYYCVDHKPHLSFPLCSAGNVFGLYKSSALGSMDIDVFNKLSTSDWSDIRDY 120 TKLYLGG++Y+C +HKP LS PL S G VFG+Y+++ GS ++D FN+L+T++WS + Y Sbjct 4929 TKLYLGGMSYFCGNHKPKLSIPLVSNGTVFGIYRANCAGSENVDDFNQLATTNWSIVEPY 4988 Query 121 KLANDAKESLRLFAAETVKAKEESVKSSYAYATLKEIVGPKELLLLWESGKAKPPLNRNS 180 LAN +SLR FAAETVKA EE K +A A ++E+ +EL+L WE GK +PPLNRN Sbjct 4989 ILANRCSDSLRRFAAETVKATEELHKQQFASAEVREVFSDRELILSWEPGKTRPPLNRNY 5048 Query 181 VFTCFQITKDSKFQVGEFVFEKVDYGSDTVTYKSTATTKLVPGMLFILTSHNVAPLRAPT 240 VFT + T+ SK Q+G+F FEK + G D V YK+T+T KL G +F+LTSHNV L APT Sbjct 5049 VFTGYHFTRTSKVQLGDFTFEKGE-GKDVVYYKATSTAKLSVGDIFVLTSHNVVSLVAPT 5107 Query 241 MANQEKYSTIYKLHPSFNVSDAYANLVPYYQLIGKQRITTIQGPPGSGKSHCSIGIGVYY 300 + Q+ +S L P+ V + + N +P Y L+GKQ+ TT+QGPPGSGKSH +IG+ VY+ Sbjct 5108 LCPQQTFSRFVNLRPNVMVPECFVNNIPLYHLVGKQKRTTVQGPPGSGKSHFAIGLAVYF 5167 Query 301 PGARIVFTACSHAAVDSLCAKAVTAYSVDKCTRIIPARARVECYSGFKPNNNSAQYVFST 360 AR+VFTACSHAAVD+LC KA VD CTRI+P R V+C+S FK N+ +Y+FST Sbjct 5168 SSARVVFTACSHAAVDALCEKAFKFLKVDDCTRIVPQRTTVDCFSKFKANDTGKKYIFST 5227 Query 361 VNALPEVNADIVVVDEVSMCTNYDLSVINQRISYKHIVYVGDPQQLPAPRVLISKGVMEP 420 +NALPEV+ DI++VDEVSM TNY+LS IN +I+Y+++VYVGDP QLPAPR L++ G + P Sbjct 5228 INALPEVSCDILLVDEVSMLTNYELSFINGKINYQYVVYVGDPAQLPAPRTLLN-GSLSP 5286 Query 421 IDYNVVTQRMCAIGPDVFLHKCYRCPAEIVNTVSELVYENKFVPVKEASKQCFK-IFERG 479 DYNVVT M + PD+FL KCYRCP EIV+TVS LVY+ KF+ S++CFK I G Sbjct 5287 KDYNVVTNLMVCVKPDIFLAKCYRCPKEIVDTVSTLVYDGKFIANNPESRECFKVIVNNG 5346 Query 480 SVQV--DNGSSINRRQLDVVKRFIHKNSTWSKAVFISPYNSQNYVAARLLGLQTQTVDSA 537 + V ++GS+ N QL+ VK F+ +N W +A+FISPYN+ N A R+LGL QTVDS+ Sbjct 5347 NSDVGHESGSAYNTTQLEFVKDFVCRNKQWREAIFISPYNAMNQRAYRMLGLNVQTVDSS 5406 Query 538 QGSEYDYVIFAQTSDTAHACNANRFNVAITRAKKGIFCIMSDR-TLFDALKFFEI-TMTD 595 QGSEYDYVIF T+D+ HA N NRFNVA+TRAK+GI +M R L+ ALKF E+ + T Sbjct 5407 QGSEYDYVIFCVTADSQHALNINRFNVALTRAKRGILVVMRQRDELYSALKFTELDSETS 5466 Query 596 LQ 597 LQ Sbjct 5467 LQ 5468 >RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p87; Contains: RecName: Full=Papain-like protease; Short=PL-PRO; AltName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=p195; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; AltName: Full=Peptide HD2; AltName: Full=p41; Contains: RecName: Full=3C-like proteinase; Short=3CL-PRO; Short=3CLp; AltName: Full=Main protease; Short=Mpro; AltName: Full=Non-structural protein 5; Short=nsp5; AltName: Full=p33; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; AltName: Full=p34; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; AltName: Full=p9; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; AltName: Full=p24; Contains: RecName: Full=Non-structural protein 9; Short=nsp9; AltName: Full=p10; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; AltName: Full=p16; Contains: RecName: Full=RNA-directed RNA polymerase; Short=Pol; Short=RdRp; AltName: Full=nsp12; AltName: Full=p100; Contains: RecName: Full=Helicase; Short=Hel; AltName: Full=nsp13; AltName: Full=p68; Contains: RecName: Full=Proofreading exoribonuclease; Short=ExoN; AltName: Full=Guanine-N7 methyltransferase; AltName: Full=Non-structural protein 14; Short=nsp14; AltName: Full=p58; Contains: RecName: Full=Uridylate-specific endoribonuclease; AltName: Full=NendoU; AltName: Full=Non-structural protein 15; Short=nsp15; AltName: Full=p39; Contains: RecName: Full=2'-O-methyl transferase; AltName: Full=Non-structural protein 16; Short=nsp16; AltName: Full=p35 [Avian infectious bronchitis virus (strain Beaudette CK)] Sequence ID: P0C6Y2.1 Length: 6629 Range 1: 4869 to 5468 Score:698 bits(1801), Expect:0.0, Method:Compositional matrix adjust., Identities:336/602(56%), Positives:439/602(72%), Gaps:7/602(1%) Query 1 AAGLCVVCGSQTVLRCGDCLRRPMLCTKCAYDHVFGTDHKFILAITPYVCNTSGCNVNDV 60 + G+CVVC SQT+LRCG+C+R+P LC KC YDHV TDHK +L+I PY+C+ GC DV Sbjct 4869 SCGVCVVCNSQTILRCGNCIRKPFLCCKCCYDHVMHTDHKNVLSINPYICSQLGCGEADV 4928 Query 61 TKLYLGGLNYYCVDHKPHLSFPLCSAGNVFGLYKSSALGSMDIDVFNKLSTSDWSDIRDY 120 TKLYLGG++Y+C +HKP LS PL S G VFG+Y+++ GS ++D FN+L+T++WS + Y Sbjct 4929 TKLYLGGMSYFCGNHKPKLSIPLVSNGTVFGIYRANCAGSENVDDFNQLATTNWSIVEPY 4988 Query 121 KLANDAKESLRLFAAETVKAKEESVKSSYAYATLKEIVGPKELLLLWESGKAKPPLNRNS 180 LAN +SLR FAAETVKA EE K +A A ++E+ +EL+L WE GK +PPLNRN Sbjct 4989 ILANRCSDSLRRFAAETVKATEELHKQQFASAEVREVFSDRELILSWEPGKTRPPLNRNY 5048 Query 181 VFTCFQITKDSKFQVGEFVFEKVDYGSDTVTYKSTATTKLVPGMLFILTSHNVAPLRAPT 240 VFT + T+ SK Q+G+F FEK + G D V YK+T+T KL G +F+LTSHNV L APT Sbjct 5049 VFTGYHFTRTSKVQLGDFTFEKGE-GKDVVYYKATSTAKLSVGDIFVLTSHNVVSLVAPT 5107 Query 241 MANQEKYSTIYKLHPSFNVSDAYANLVPYYQLIGKQRITTIQGPPGSGKSHCSIGIGVYY 300 + Q+ +S L P+ V + + N +P Y L+GKQ+ TT+QGPPGSGKSH +IG+ VY+ Sbjct 5108 LCPQQTFSRFVNLRPNVMVPECFVNNIPLYHLVGKQKRTTVQGPPGSGKSHFAIGLAVYF 5167 Query 301 PGARIVFTACSHAAVDSLCAKAVTAYSVDKCTRIIPARARVECYSGFKPNNNSAQYVFST 360 AR+VFTACSHAAVD+LC KA VD CTRI+P R V+C+S FK N+ +Y+FST Sbjct 5168 SSARVVFTACSHAAVDALCEKAFKFLKVDDCTRIVPQRTTVDCFSKFKANDTGKKYIFST 5227 Query 361 VNALPEVNADIVVVDEVSMCTNYDLSVINQRISYKHIVYVGDPQQLPAPRVLISKGVMEP 420 +NALPEV+ DI++VDEVSM TNY+LS IN +I+Y+++VYVGDP QLPAPR L++ G + P Sbjct 5228 INALPEVSCDILLVDEVSMLTNYELSFINGKINYQYVVYVGDPAQLPAPRTLLN-GSLSP 5286 Query 421 IDYNVVTQRMCAIGPDVFLHKCYRCPAEIVNTVSELVYENKFVPVKEASKQCFK-IFERG 479 DYNVVT M + PD+FL KCYRCP EIV+TVS LVY+ KF+ S++CFK I G Sbjct 5287 KDYNVVTNLMVCVKPDIFLAKCYRCPKEIVDTVSTLVYDGKFIANNPESRECFKVIVNNG 5346 Query 480 SVQV--DNGSSINRRQLDVVKRFIHKNSTWSKAVFISPYNSQNYVAARLLGLQTQTVDSA 537 + V ++GS+ N QL+ VK F+ +N W +A+FISPYN+ N A R+LGL QTVDS+ Sbjct 5347 NSDVGHESGSAYNTTQLEFVKDFVCRNKQWREAIFISPYNAMNQRAYRMLGLNVQTVDSS 5406 Query 538 QGSEYDYVIFAQTSDTAHACNANRFNVAITRAKKGIFCIMSDR-TLFDALKFFEI-TMTD 595 QGSEYDYVIF T+D+ HA N NRFNVA+TRAK+GI +M R L+ ALKF E+ + T Sbjct 5407 QGSEYDYVIFCVTADSQHALNINRFNVALTRAKRGILVVMRQRDELYSALKFTELDSETS 5466 Query 596 LQ 597 LQ Sbjct 5467 LQ 5468 >RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p87; Contains: RecName: Full=Papain-like protease; Short=PL-PRO; AltName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=p195; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; AltName: Full=Peptide HD2; AltName: Full=p41; Contains: RecName: Full=3C-like proteinase; Short=3CL-PRO; Short=3CLp; AltName: Full=Main protease; Short=Mpro; AltName: Full=Non-structural protein 5; Short=nsp5; AltName: Full=p33; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; AltName: Full=p34; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; AltName: Full=p9; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; AltName: Full=p24; Contains: RecName: Full=Non-structural protein 9; Short=nsp9; AltName: Full=p10; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; AltName: Full=p16; Contains: RecName: Full=RNA-directed RNA polymerase; Short=Pol; Short=RdRp; AltName: Full=nsp12; AltName: Full=p100; Contains: RecName: Full=Helicase; Short=Hel; AltName: Full=nsp13; AltName: Full=p68; Contains: RecName: Full=Proofreading exoribonuclease; Short=ExoN; AltName: Full=Guanine-N7 methyltransferase; AltName: Full=Non-structural protein 14; Short=nsp14; AltName: Full=p58; Contains: RecName: Full=Uridylate-specific endoribonuclease; AltName: Full=NendoU; AltName: Full=Non-structural protein 15; Short=nsp15; AltName: Full=p39; Contains: RecName: Full=2'-O-methyl transferase; AltName: Full=Non-structural protein 16; Short=nsp16; AltName: Full=p35 [Avian infectious bronchitis virus (strain M41)] Sequence ID: P0C6Y3.1 Length: 6631 Range 1: 4871 to 5463 Score:696 bits(1796), Expect:0.0, Method:Compositional matrix adjust., Identities:332/595(56%), Positives:433/595(72%), Gaps:6/595(1%) Query 1 AAGLCVVCGSQTVLRCGDCLRRPMLCTKCAYDHVFGTDHKFILAITPYVCNTSGCNVNDV 60 + G+CVVC SQT+LRCG+C+R+P LC KC YDHV TDHK +L+I PY+C+ GC DV Sbjct 4871 SCGVCVVCNSQTILRCGNCIRKPFLCCKCCYDHVMHTDHKNVLSINPYICSQPGCGEADV 4930 Query 61 TKLYLGGLNYYCVDHKPHLSFPLCSAGNVFGLYKSSALGSMDIDVFNKLSTSDWSDIRDY 120 TKLYLGG++Y+C +HKP LS PL S G VFG+Y+++ GS ++D FN+L+T++WS + Y Sbjct 4931 TKLYLGGMSYFCGNHKPKLSIPLVSNGTVFGIYRANCAGSENVDDFNQLATTNWSTVEPY 4990 Query 121 KLANDAKESLRLFAAETVKAKEESVKSSYAYATLKEIVGPKELLLLWESGKAKPPLNRNS 180 LAN +SLR FAAETVKA EE K +A A ++E++ +EL+L WE GK +PPLNRN Sbjct 4991 ILANRCVDSLRRFAAETVKATEELHKQQFASAEVREVLSDRELILSWEPGKTRPPLNRNY 5050 Query 181 VFTCFQITKDSKFQVGEFVFEKVDYGSDTVTYKSTATTKLVPGMLFILTSHNVAPLRAPT 240 VFT F T+ SK Q+G+F FEK + G D V Y++T+T KL G +F+LTSHNV L APT Sbjct 5051 VFTGFHFTRTSKVQLGDFTFEKGE-GKDVVYYRATSTAKLSVGDIFVLTSHNVVSLIAPT 5109 Query 241 MANQEKYSTIYKLHPSFNVSDAYANLVPYYQLIGKQRITTIQGPPGSGKSHCSIGIGVYY 300 + Q+ +S L P+ V + N +P Y L+GKQ+ TT+QGPPGSGKSH +IG+ Y+ Sbjct 5110 LCPQQTFSRFVNLRPNVMVPACFVNNIPLYHLVGKQKRTTVQGPPGSGKSHFAIGLAAYF 5169 Query 301 PGARIVFTACSHAAVDSLCAKAVTAYSVDKCTRIIPARARVECYSGFKPNNNSAQYVFST 360 AR+VFTACSHAAVD+LC KA VD CTRI+P R ++C+S FK N+ +Y+FST Sbjct 5170 SNARVVFTACSHAAVDALCEKAFKFLKVDDCTRIVPQRTTIDCFSKFKANDTGKKYIFST 5229 Query 361 VNALPEVNADIVVVDEVSMCTNYDLSVINQRISYKHIVYVGDPQQLPAPRVLISKGVMEP 420 +NALPEV+ DI++VDEVSM TNY+LS IN +I+Y+++VYVGDP QLPAPR L++ G + P Sbjct 5230 INALPEVSCDILLVDEVSMLTNYELSFINGKINYQYVVYVGDPAQLPAPRTLLN-GSLSP 5288 Query 421 IDYNVVTQRMCAIGPDVFLHKCYRCPAEIVNTVSELVYENKFVPVKEASKQCFK-IFERG 479 DYNVVT M + PD+FL KCYRCP EIV+TVS LVY+ KF+ S+QCFK I G Sbjct 5289 KDYNVVTNLMVCVKPDIFLAKCYRCPKEIVDTVSTLVYDGKFIANNPESRQCFKVIVNNG 5348 Query 480 SVQV--DNGSSINRRQLDVVKRFIHKNSTWSKAVFISPYNSQNYVAARLLGLQTQTVDSA 537 + V ++GS+ N QL+ VK F+ +N W +A FISPYN+ N A R+LGL QTVDS+ Sbjct 5349 NSDVGHESGSAYNITQLEFVKDFVCRNKEWREATFISPYNAMNQRAYRMLGLNVQTVDSS 5408 Query 538 QGSEYDYVIFAQTSDTAHACNANRFNVAITRAKKGIFCIMSDR-TLFDALKFFEI 591 QGSEYDYVIF T+D+ HA N NRFNVA+TRAK+GI +M R L+ ALKF E+ Sbjct 5409 QGSEYDYVIFCVTADSQHALNINRFNVALTRAKRGILVVMRQRDELYSALKFIEL 5463 >RecName: Full=Protein ZGRF1; AltName: Full=GRF-type zinc finger domain-containing protein 1 [Mus musculus] Sequence ID: Q0VGT4.2 Length: 1863 Range 1: 1566 to 1800 Score:58.2 bits(139), Expect:2e-07, Method:Compositional matrix adjust., Identities:64/237(27%), Positives:99/237(41%), Gaps:31/237(13%) Query 371 IVVVDEVSMCTNYDLSVINQRISYKHIVYVGDPQQLPAPRVLISKGVMEPIDYNVVTQRM 430 +VV+DE S T + R + ++ VGDP+QLP P + S E + R+ Sbjct 1566 VVVLDECSQMTEPASLLPIARFQCEKLILVGDPKQLP-PTIQGSDAAHENGLEQTLFDRL 1624 Query 431 CAIG-PDVFLHKCYRCPAEIVNTVSELVYENKFV---------PVKE-ASKQCFKIFERG 479 C +G V L YRC I ++L YE V PV E CF G Sbjct 1625 CLMGHKPVLLRTQYRCHPAISAIANDLFYEGSLVNGISERERSPVLEWLPTLCFYNV-TG 1683 Query 480 SVQVDNGSS-INRRQ----LDVVKRFIHKNSTWSKAVFISPYNSQNYVAARLL------- 527 + QV+ +S +N + L +++ + I+ Y SQ Y LL Sbjct 1684 AEQVERENSFVNVAEATFTLKLIQSLMASGVESCMIGVITLYKSQMYKICNLLSAVDVGH 1743 Query 528 ----GLQTQTVDSAQGSEYDYVIFA--QTSDTAHACNANRFNVAITRAKKGIFCIMS 578 +Q TVD+ QG+E + I + +T + R NVA+TR ++ + + S Sbjct 1744 PDVKAVQVSTVDAFQGAEKEITILSCVRTRQVGFIDSEKRMNVALTRGRRHLLIVGS 1800 >RecName: Full=Protein ZGRF1; AltName: Full=GRF-type zinc finger domain-containing protein 1 [Homo sapiens] Sequence ID: Q86YA3.3 Length: 2104 Range 1: 1805 to 2037 Score:57.4 bits(137), Expect:4e-07, Method:Compositional matrix adjust., Identities:60/235(26%), Positives:98/235(41%), Gaps:31/235(13%) Query 371 IVVVDEVSMCTNYDLSVINQRISYKHIVYVGDPQQLPAPRVLISKGVMEPIDYNVVTQRM 430 +VV+DE S T + R + ++ VGDP+QLP P + S E + R+ Sbjct 1805 VVVLDECSQITEPASLLPIARFECEKLILVGDPKQLP-PTIQGSDAAHENGLEQTLFDRL 1863 Query 431 CAIG-PDVFLHKCYRCPAEIVNTVSELVYENKFV-PVKEASKQ---------CFKIFERG 479 C +G + L YRC I ++L Y+ + V E + CF +G Sbjct 1864 CLMGHKPILLRTQYRCHPAISAIANDLFYKGALMNGVTEIERSPLLEWLPTLCFYNV-KG 1922 Query 480 SVQVDNGSSINRR-----QLDVVKRFIHKNSTWSKAVFISPYNSQNYVAARLLG------ 528 Q++ +S + L +++ I S I+ Y SQ Y LL Sbjct 1923 LEQIERDNSFHNVAEATFTLKLIQSLIASGIAGSMIGVITLYKSQMYKLCHLLSAVDFHH 1982 Query 529 -----LQTQTVDSAQGSEYDYVIFA--QTSDTAHACNANRFNVAITRAKKGIFCI 576 +Q TVD+ QG+E + +I + +T + R NVA+TR K+ + + Sbjct 1983 PDIKTVQVSTVDAFQGAEKEIIILSCVRTRQVGFIDSEKRMNVALTRGKRHLLIV 2037 >RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Non-structural protein 1; Short=nsp1; AltName: Full=Papain-like proteinase; Short=PL-PRO; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; Contains: RecName: Full=3C-like serine proteinase; Short=3CLSP; AltName: Full=M-PRO; AltName: Full=nsp3; AltName: Full=p27; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; Contains: RecName: Full=Non-structural protein 5; Short=nsp5; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; Contains: RecName: Full=RNA-directed RNA polymerase; Short=Pol; Short=RdRp; AltName: Full=nsp10; AltName: Full=p100; Contains: RecName: Full=Helicase; Short=Hel; AltName: Full=nsp11; AltName: Full=p67; Contains: RecName: Full=Exoribonuclease; Short=ExoN; AltName: Full=nsp12; Contains: RecName: Full=Non-structural protein 13; Short=nsp13; Contains: RecName: Full=Uridylate-specific endoribonuclease; AltName: Full=NendoU; AltName: Full=nsp14; Contains: RecName: Full=Putative 2'-O-methyl transferase; AltName: Full=nsp15 [Breda virus serotype 1] Sequence ID: P0C6V8.1 Length: 6733 Range 1: 5536 to 5704 Score:51.2 bits(121), Expect:3e-05, Method:Compositional matrix adjust., Identities:49/189(26%), Positives:84/189(44%), Gaps:29/189(15%) Query 276 QRITTIQGPPGSGKSHCSIGIGVYY----PGARIVFTACSHAAVDSLCAKA-----VTAY 326 + +T + GPPG+GK+ + Y P R V+ A +H V + K V+AY Sbjct 5536 ENVTFVMGPPGTGKT--TFVYNTYLSKASPSNRFVYCAPTHRLVGDMDEKVDGAVVVSAY 5593 Query 327 SVDKCTRIIPARARVECYSGFKPNNNSAQYVFSTVNALPEVNADIVVVDEVSMCTNYDLS 386 + D+ R + ++S + T N LP + + +++VDEVS+ + + Sbjct 5594 N-DRTYR-----------NPVWKKDDSYDVLLCTHNTLPFIKSAVLIVDEVSLIPPHVMI 5641 Query 387 VINQRISYKHIVYVGDPQQLPAPRVLISKGVMEPIDYNVVTQRMCAIGPDVFLHKCYRCP 446 I + +K +V +GDP QL + K Y+ A +L CYRCP Sbjct 5642 KI-LSMGFKKVVLLGDPFQLSP----VYKNHKVHFKYDTFYLLQLATQKR-YLTACYRCP 5695 Query 447 AEIVNTVSE 455 +I++ S+ Sbjct 5696 PQILSAFSK 5704 >RecName: Full=NFX1-type zinc finger-containing protein 1 [Homo sapiens] Sequence ID: Q9P2E3.2 Length: 1918 Range 1: 995 to 1231 Score:49.3 bits(116), Expect:1e-04, Method:Compositional matrix adjust., Identities:57/246(23%), Positives:118/246(47%), Gaps:42/246(17%) Query 364 LPEVNADIVVVDEVS-MCTNYDLSVINQRISYKHIVYVGDPQQL-PAPRVL-ISKGVMEP 420 L +V IV+V+E + + + ++ +++ + +H++ +GD QQL P+ V ++K Sbjct 995 LQKVEPRIVIVEEAAEVLEAHTIATLSK--ACQHLILIGDHQQLRPSANVYDLAK----- 1047 Query 421 IDYNV---VTQRMCAIG-PDVFLHKCYRCPAEIVNTVSELVYEN--------KFVPVKEA 468 ++N+ + +R+ + P V L+ +R EI ++ +Y++ K+ +K Sbjct 1048 -NFNLEVSLFERLVKVNIPFVRLNYQHRMCPEIARLLTPHIYQDLENHPSVLKYEKIKGV 1106 Query 469 SKQCFKI---FERGSVQVDNGSSINRRQ----LDVVKRFIHKNSTWSKAVFISPYNSQNY 521 S F + F +Q + S N+ + +++ K F+ + S+ ++ Y Q + Sbjct 1107 SSNLFFVEHNFPEQEIQ-EGKSHQNQHEAHFVVELCKYFLCQEYLPSQITILTTYTGQLF 1165 Query 522 VAARLL------GLQTQTVDSAQGSEYDYVIFA-----QTSDTAHACNANRFNVAITRAK 570 +L+ G++ VD QG E D ++ + Q +NR VA++RAK Sbjct 1166 CLRKLMPAKTFAGVRVHVVDKYQGEENDIILLSLVRSNQEGKVGFLQISNRICVALSRAK 1225 Query 571 KGIFCI 576 KG++CI Sbjct 1226 KGMYCI 1231 >RecName: Full=Regulator of nonsense transcripts 1 homolog [Neurospora crassa OR74A] Sequence ID: Q9HEH1.1 Length: 1093 Range 1: 397 to 864 Score:47.8 bits(112), Expect:2e-04, Method:Compositional matrix adjust., Identities:97/479(20%), Positives:179/479(37%), Gaps:104/479(21%) Query 197 EFVFEKVDYGSDTVTYKSTATTKL-VPGMLF-ILTSHNVAPLRAPTMANQEKYSTIYKLH 254 ++V++ Y + K+ A ++ V G +F L H V APT K + L Sbjct 397 DYVWKATSYDRMQLAMKTFAVDEMSVSGYIFHKLLGHEVQ--VAPTKITMPKKFHVPGL- 453 Query 255 PSFNVSDAYANLVPYYQLIGKQRITTIQGPPGSGKSHCSIGIGVYY----PGARIVFTAC 310 P N S A + + ++ IQGPPG+GK+ S I +Y+ ++++ A Sbjct 454 PELNASQIAA-----IKQVLSNPLSLIQGPPGTGKTVTSATI-IYHLAKMSNSQVLVCAP 507 Query 311 SHAAVDSLCAK---------AVTAYS------------------VDKCTRIIPARARVEC 343 S+ AVD LC + +TA S ++ + + +++ Sbjct 508 SNVAVDQLCERIHRTGLKVVRLTAKSREDVESSVSFLALHEQVRMNTTNKELDGLVKLKT 567 Query 344 YSGFKPNNNSAQYVFSTVNALPEV--NADI--------------------VVVDEVSMCT 381 +G + + ++ T A E+ NAD+ V++DE + Sbjct 568 ETGELSSQDEKRFKQLTRQAEREILQNADVVCCTCVGAGDPRLSKMKFRNVLIDESTQSA 627 Query 382 NYDLSVINQRISYKHIVYVGDPQQLPAPRVLISKGVMEPIDYNVVTQRMCAIGPDVFLHK 441 + +I + K +V VGD +QL P ++ K ++ ++ + + + L Sbjct 628 EPEC-MIPLVLGCKQVVLVGDHKQL-GPVIMNKKAAKAGLNQSLFERLVKLQFTPIRLKV 685 Query 442 CYRCPAEIVNTVSELVYENKF-----------------VPVKEASKQCFKIFERGSVQVD 484 YR + S + YE PV E + + Sbjct 686 QYRMHPCLSEFPSNMFYEGSLQNGVTAAERLRKDVDFPWPVPETPMMFWSNLGNEEISAS 745 Query 485 NGSSINRRQL----DVVKRFIHKNSTWSKAVFISPYNSQ-NYVAARLLG----------- 528 S +NR + +V RF + I+PY Q +Y+ + Sbjct 746 GTSYLNRTEAANVEKIVTRFFKAGVKPADIGVITPYEGQRSYIVNTMQNTGTFKKESYRE 805 Query 529 LQTQTVDSAQGSEYDYVIFA-----QTSDTAHACNANRFNVAITRAKKGIFCIMSDRTL 582 ++ +VD+ QG E D+++ + + + R NVA+TRAK G+ I + + L Sbjct 806 VEVASVDAFQGREKDFIVLSCVRSNENQGIGFLSDPRRLNVALTRAKYGLVIIGNPKVL 864 >RecName: Full=Probable RNA helicase SDE3; AltName: Full=Silencing defective protein 3 [Arabidopsis thaliana] Sequence ID: Q8GYD9.1 Length: 1002 Range 1: 419 to 786 Score:47.4 bits(111), Expect:3e-04, Method:Compositional matrix adjust., Identities:86/378(23%), Positives:139/378(36%), Gaps:99/378(26%) Query 281 IQGPPGSGKS----HCSIGIGVYYPGARIVFTACSHAAVDSLCAKAVTAYSVD-KCTRII 335 I GPPG+GK+ + + AR++ A S++A D + K + V K I Sbjct 419 IHGPPGTGKTMTLVEAIVQLYTTQRNARVLVCAPSNSAADHILEKLLCLEGVRIKDNEIF 478 Query 336 PARARVECYSGFKPN-------------------NNSAQYVFSTVNALPEVNADIV---- 372 A Y KP + V ST + +NA+ V Sbjct 479 RLNAATRSYEEIKPEIIRFCFFDELIFKCPPLKALTRYKLVVSTYMSASLLNAEGVNRGH 538 Query 373 ----VVDEVSMCTNYD--LSVINQRISYKHIVYVGDPQQL-------PAPRVLISKGVME 419 ++DE + + ++V N ++ +V GDP+QL A + + K +E Sbjct 539 FTHILLDEAGQASEPENMIAVSNLCLTETVVVLAGDPRQLGPVIYSRDAESLGLGKSYLE 598 Query 420 PI---------DYNVVTQRMCAIGPDVFLHKCYRCPAEIVNTVSELVYENK--------- 461 + D N VT+ L K YRC EI++ S+L Y+ + Sbjct 599 RLFECDYYCEGDENYVTK----------LVKNYRCHPEILDLPSKLFYDGELVASKEDTD 648 Query 462 -------FVPVKEASKQCFKIFERGSVQVDNGSSINR----RQLDVVKRFIHKNSTWSKA 510 F+P KE + I + +N S NR + ++ +KR + + Sbjct 649 SVLASLNFLPNKEFPMVFYGIQGCDEREGNNPSWFNRIEISKVIETIKRLTANDCVQEED 708 Query 511 V-FISPYNSQNYVAARLLG------LQTQTVDSAQGSEYDYVIFAQTSDT---------- 553 + I+PY Q +L ++ +V+ QG E +I + T Sbjct 709 IGVITPYRQQVMKIKEVLDRLDMTEVKVGSVEQFQGQEKQVIIISTVRSTIKHNEFDRAY 768 Query 554 --AHACNANRFNVAITRA 569 N RFNVAITRA Sbjct 769 CLGFLSNPRRFNVAITRA 786 >RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Non-structural protein 1; Short=nsp1; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; Contains: RecName: Full=3C-like serine proteinase; Short=3CLSP; AltName: Full=M-PRO; AltName: Full=nsp3; AltName: Full=p27; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; Contains: RecName: Full=Non-structural protein 5; Short=nsp5; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; Contains: RecName: Full=RNA-directed RNA polymerase; Short=Pol; Short=RdRp; AltName: Full=nsp10; AltName: Full=p100; Contains: RecName: Full=Helicase; Short=Hel; AltName: Full=nsp11; AltName: Full=p67; Contains: RecName: Full=Exoribonuclease; Short=ExoN; AltName: Full=nsp12; Contains: RecName: Full=Non-structural protein 13; Short=nsp13; Contains: RecName: Full=Uridylate-specific endoribonuclease; AltName: Full=NendoU; AltName: Full=nsp14; Contains: RecName: Full=Putative 2'-O-methyl transferase; AltName: Full=nsp15 [Berne virus] Sequence ID: P0C6V7.1 Length: 6857 Range 1: 5660 to 5828 Score:47.4 bits(111), Expect:4e-04, Method:Compositional matrix adjust., Identities:49/189(26%), Positives:83/189(43%), Gaps:29/189(15%) Query 276 QRITTIQGPPGSGKSHCSIGIGVYYPGA----RIVFTACSHAAVDSLCAKA-----VTAY 326 + +T + GPPG+GK+ + Y A R V+ A +H V + K V+AY Sbjct 5660 ENVTFVMGPPGTGKT--TFVYDTYLSKASSSNRFVYCAPTHRLVGDMDEKVDGAVVVSAY 5717 Query 327 SVDKCTRIIPARARVECYSGFKPNNNSAQYVFSTVNALPEVNADIVVVDEVSMCTNYDLS 386 + D+ R P + + Y + T N LP + + +++ DEVS+ + + Sbjct 5718 N-DRTYRN-PVWNKDDSYG----------VLLCTHNTLPFIKSAVLIADEVSLIPPHVMI 5765 Query 387 VINQRISYKHIVYVGDPQQLPAPRVLISKGVMEPIDYNVVTQRMCAIGPDVFLHKCYRCP 446 I + +K +V +GDP QL + K Y+ A +L CYRCP Sbjct 5766 KI-LSMGFKKVVLLGDPFQLSP----VYKNHKVHFKYDTFYLLQLATQKR-YLTACYRCP 5819 Query 447 AEIVNTVSE 455 +I++ S+ Sbjct 5820 PQILSAFSK 5828 >RecName: Full=NFX1-type zinc finger-containing protein 1 [Mus musculus] Sequence ID: Q8R151.3 Length: 1909 Range 1: 988 to 1224 Score:46.2 bits(108), Expect:8e-04, Method:Compositional matrix adjust., Identities:55/246(22%), Positives:116/246(47%), Gaps:42/246(17%) Query 364 LPEVNADIVVVDEVS-MCTNYDLSVINQRISYKHIVYVGDPQQL-PAPRVL-ISKGVMEP 420 L +V IV+V+E + + + ++ +++ + +H++ +GD QQL P+ V ++K Sbjct 988 LQQVEPRIVIVEEAAEVLEAHTIATLSK--ACQHLILIGDHQQLRPSANVYDLAK----- 1040 Query 421 IDYNV---VTQRMCAIG-PDVFLHKCYRCPAEIVNTVSELVYEN--------KFVPVKEA 468 ++N+ + +R+ + P V L+ +R EI ++ +Y++ K+ +K Sbjct 1041 -NFNLEVSLFERLVKVNIPFVRLNYQHRMRPEIARLLTPHIYQDLENHPSVLKYEQIKGV 1099 Query 469 SKQCFKI---FERGSVQVDNGSSINRRQ----LDVVKRFIHKNSTWSKAVFISPYNSQNY 521 S F + F +Q + S N+ + +++ + + + S+ ++ Y Q + Sbjct 1100 SSNLFFVEHNFPEQEIQ-EGKSHQNQHEAHFVVELCQYLLCQEYLPSQITILTTYTGQLF 1158 Query 522 VAARLL------GLQTQTVDSAQGSEYDYVIFA-----QTSDTAHACNANRFNVAITRAK 570 +L+ G++ VD QG E D ++ + Q NR VA++RAK Sbjct 1159 CLRKLMPVKTFAGIKVHVVDKYQGEENDIILLSLVRSNQEGKVGFLQIPNRICVALSRAK 1218 Query 571 KGIFCI 576 KG++CI Sbjct 1219 KGMYCI 1224 >RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Non-structural protein 1; Short=nsp1; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; Contains: RecName: Full=3C-like serine proteinase; Short=3CLSP; AltName: Full=M-PRO; AltName: Full=nsp3; AltName: Full=p27; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; Contains: RecName: Full=Non-structural protein 5; Short=nsp5; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; Contains: RecName: Full=RNA-directed RNA polymerase; Short=Pol; Short=RdRp; AltName: Full=nsp9; Contains: RecName: Full=Helicase; Short=Hel; AltName: Full=nsp10; Contains: RecName: Full=Exoribonuclease; Short=ExoN; AltName: Full=nsp11; Contains: RecName: Full=Non-structural protein 12; Short=nsp12; Contains: RecName: Full=Uridylate-specific endoribonuclease; AltName: Full=NendoU; AltName: Full=nsp13; Contains: RecName: Full=Putative 2'-O-methyl transferase; AltName: Full=nsp14 [White bream virus (strain DF24/00)] Sequence ID: Q008X6.1 Length: 6872 Range 1: 5397 to 5478 Score:45.4 bits(106), Expect:0.001, Method:Compositional matrix adjust., Identities:25/84(30%), Positives:41/84(48%), Gaps:3/84(3%) Query 1 AAGLCVVCGSQTVLRCGDCLRRPMLCTKCAYDHVFGTDHKFILAITPYVCN-TSGCNVND 59 +A C C + TV C DC + +C CAY+H+ TDH + +VC+ T ++N Sbjct 5397 SASQCYFCDNATVSTCSDCTVQYPMCAHCAYEHLMLTDHTPTQVLPCHVCDQTDPRHLNH 5456 Query 60 VTKLYLGGLNYYCVDHKPHLSFPL 83 +G + C +H ++ PL Sbjct 5457 T--FVMGTVKVACDNHVEGMALPL 5478