RID: J280DUX6016 Job Title:POLN_GETV Q5Y389 Polyprotein P1234 OS=Getah... Program: BLASTP Database: swissprot Non-redundant UniProtKB/SwissProt sequences Query #1: POLN_GETV Q5Y389 Polyprotein P1234 OS=Getah virus OX=59300 PE=1 SV=3 Query ID: lcl|Query_82040 Length: 798 Sequences producing significant alignments: Scientific Common Max Total Query E Per. Acc. Description Name Name Taxid Score Score cover Value Ident Len Accession RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Getah virus NA 59300 1684 1684 100% 0.0 100.00 2467 Q5Y389.3 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Sagiyama virus NA 59303 1677 1677 100% 0.0 99.62 2467 Q9JGL0.3 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Ross river v... NA 11031 1533 1533 100% 0.0 88.85 2480 P13887.2 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Semliki Fore... NA 11033 1313 1313 100% 0.0 76.10 2432 P08411.2 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Mayaro virus... NA 374990 1269 1269 100% 0.0 74.72 2437 Q8QZ73.3 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... O'nyong-nyon... NA 11028 1200 1200 100% 0.0 69.88 2514 P13886.2 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... O'nyong-nyon... NA 374989 1199 1199 100% 0.0 69.75 2513 O90368.1 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Igbo Ora virus NA 79899 1198 1198 100% 0.0 69.75 2513 O90370.1 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Chikungunya ... NA 371095 1196 1196 100% 0.0 70.09 2474 Q5XXP4.1 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Chikungunya ... NA 371094 1189 1189 100% 0.0 69.71 2474 Q8JUX6.1 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Barmah Fores... NA 11020 1082 1082 98% 0.0 65.40 2411 P87515.3 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Ockelbo virus NA 31699 1006 1006 98% 0.0 60.38 2515 P27283.2 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Sindbis virus NA 11034 1001 1001 98% 0.0 60.00 2513 P03317.2 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Venezuelan e... NA 376610 981 981 100% 0.0 58.88 2497 Q8V294.3 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Venezuelan e... NA 36384 980 980 100% 0.0 58.88 2499 Q9WJC7.3 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Venezuelan e... NA 36382 977 977 100% 0.0 58.82 2485 P36327.3 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Venezuelan e... NA 36385 977 977 100% 0.0 58.70 2493 P36328.2 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Venezuelan e... NA 11038 976 976 100% 0.0 58.82 2493 P27282.3 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Eastern equi... NA 374596 956 956 99% 0.0 58.57 2471 Q306W6.3 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Eastern equi... NA 374598 949 949 99% 0.0 57.82 2494 Q4QXJ8.3 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Eastern equi... NA 374597 948 948 99% 0.0 57.95 2474 Q306W8.3 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Western equi... NA 11039 924 924 99% 0.0 57.09 2467 P13896.3 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Aura virus NA 44158 900 900 98% 0.0 55.29 2499 Q86924.3 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Salmon pancr... NA 84589 652 652 98% 0.0 43.82 2601 Q8JJX1.1 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Sleeping dis... NA 78540 645 645 98% 0.0 44.24 2593 Q8QL53.1 RecName: Full=Replicase large subunit; AltName: Full=183 kDa... Odontoglossu... NA 138661 77.4 77.4 34% 3e-13 27.61 1612 P89659.2 RecName: Full=Replicase large subunit; AltName: Full=183 kDa... Odontoglossu... NA 138662 77.0 77.0 32% 4e-13 28.01 1612 Q84133.2 RecName: Full=Replicase large subunit; AltName: Full=183 kDa... Sunn-hemp mo... NA 12240 67.8 67.8 31% 3e-10 25.84 1629 P89202.2 RecName: Full=Replicase large subunit; AltName: Full=183 kDa... Obuda pepper... NA 31749 66.2 66.2 33% 8e-10 26.50 1616 P90211.1 RecName: Full=Replicase large subunit; AltName: Full=186 kDa... Cucumber gre... NA 12236 64.7 64.7 33% 3e-09 26.88 1648 P69514.1 RecName: Full=Replicase large subunit; AltName: Full=183 kDa... Tobacco mild... NA 12241 63.9 63.9 33% 4e-09 25.53 1609 P18339.2 RecName: Full=Replicase large subunit; AltName:... Potato mop-t... NA 652839 60.8 60.8 34% 4e-08 26.19 1812 Q9QBU0.3 RecName: Full=Replicase large subunit; AltName: Full=183 kDa... Turnip vein-... NA 29272 60.5 60.5 33% 5e-08 24.73 1601 Q88920.1 RecName: Full=Replicase large subunit; AltName: Full=182 kDa... Youcai mosai... NA 228578 58.5 58.5 34% 2e-07 25.17 1597 Q66220.2 RecName: Full=Replicase large subunit; AltName:... Peanut clump... NA 652837 55.5 55.5 30% 2e-06 25.28 1672 Q84687.2 RecName: Full=Replicase polyprotein 1ab; Contains: RecName:... Beet yellows... NA 478555 55.5 55.5 30% 2e-06 26.28 3094 Q08534.2 RecName: Full=Methyltransferase/helicase/RNA-directed RNA... Raspberry bu... NA 652675 55.1 55.1 30% 2e-06 28.10 1694 Q05983.1 RecName: Full=Replicase large subunit; AltName: Full=183 kDa... Tomato mosai... NA 138314 55.1 55.1 32% 3e-06 24.28 1616 Q9YKD6.1 RecName: Full=Replicase large subunit; AltName: Full=183 kDa... Tomato mosai... NA 138312 53.5 53.5 32% 7e-06 24.28 1616 P89676.1 RecName: Full=Replicase large subunit; AltName: Full=183 kDa... Tobacco mosa... NA 12252 53.5 53.5 32% 7e-06 24.28 1616 P03587.2 RecName: Full=Replicase large subunit; AltName: Full=183 kDa... Tomato mosai... NA 138311 53.5 53.5 32% 8e-06 24.28 1616 Q9Q1T8.2 RecName: Full=Replicase large subunit; AltName: Full=183 kDa... Tomato brown... NA 2654645 52.4 52.4 32% 2e-05 23.10 1615 A0A0S2T050.1 RecName: Full=Replicase large subunit; AltName: Full=194 kDa... Tobacco ratt... NA 652939 50.8 50.8 31% 5e-05 25.37 1707 Q9J942.2 RecName: Full=Replicase large subunit; AltName: Full=194 kDa... Tobacco ratt... NA 12298 50.8 50.8 31% 5e-05 25.37 1707 P05080.2 RecName: Full=Replication protein 1a; Includes: RecName:... Olive latent... NA 650489 50.1 50.1 27% 7e-05 25.32 908 Q83943.1 RecName: Full=Replication protein 1a; Includes: RecName:... Pelargonium ... NA 650488 50.1 50.1 15% 8e-05 28.36 962 Q9DUT3.1 RecName: Full=Replication protein 1a; Includes: RecName:... Brome mosaic... NA 12302 50.1 50.1 18% 8e-05 30.25 961 P03588.1 RecName: Full=Replicase polyprotein 1ab; Contains: RecName:... Grapevine le... NA 651354 49.7 49.7 35% 1e-04 24.34 2772 O71189.3 RecName: Full=Replication protein 1a; Includes: RecName:... Cucumber mos... NA 12309 49.3 49.3 13% 1e-04 32.43 993 P20122.1 RecName: Full=Replicase protein 1a; Contains: RecName:... Grapevine le... NA 651354 49.3 49.3 34% 2e-04 24.23 2233 O71188.2 RecName: Full=Replicase large subunit; AltName: Full=183 kDa... Tobacco mosa... NA 138310 48.9 48.9 35% 2e-04 24.75 1616 Q98745.1 RecName: Full=Replication protein 1a; Includes: RecName:... Cucumber mos... NA 117114 48.1 48.1 13% 3e-04 32.43 993 Q66121.1 RecName: Full=Replication protein 1a; Includes: RecName:... Cucumber mos... NA 12310 48.1 48.1 19% 3e-04 27.61 991 P06011.1 RecName: Full=Replication protein 1a; Includes: RecName:... Cucumber mos... NA 117124 47.8 47.8 13% 4e-04 31.53 993 O40976.1 RecName: Full=Replicase large subunit; AltName: Full=183 kDa... Tobacco mosa... NA 138309 47.8 47.8 32% 4e-04 24.46 1616 Q9YQ08.1 RecName: Full=Replication protein 1a; Includes: RecName:... Cucumber mos... NA 117113 47.8 47.8 13% 4e-04 31.53 993 Q83270.1 RecName: Full=Replication protein 1a; Includes: RecName:... Cucumber mos... NA 12307 47.8 47.8 13% 4e-04 31.53 993 P17769.2 RecName: Full=Replicase large subunit; AltName: Full=209 kDa... Soil-borne w... NA 652673 47.8 47.8 27% 4e-04 24.27 1828 Q89249.1 RecName: Full=Replicase large subunit; AltName: Full=183 kDa... Tobacco mosa... NA 12243 47.0 47.0 32% 8e-04 24.46 1616 P03586.2 RecName: Full=Replicase large subunit; AltName: Full=183 kDa... Tobacco mosa... NA 12251 47.0 47.0 32% 8e-04 24.46 1616 O93058.1 RecName: Full=Replication protein 1a; Includes: RecName:... Alfalfa mosa... NA 12322 45.8 45.8 31% 0.002 23.70 1126 P03589.1 RecName: Full=Replicase large subunit; AltName: Full=183 kDa... Tobacco mosa... NA 31746 45.1 45.1 32% 0.003 24.10 1616 P30738.2 RecName: Full=Replication protein 1a; Includes: RecName:... Tobacco stre... NA 12318 43.1 43.1 18% 0.011 26.11 1094 P89680.1 RecName: Full=Replication protein alpha-A; Includes: RecName:... Barley strip... NA 12327 42.7 42.7 9% 0.013 32.56 1139 P17595.1 RecName: Full=RNA replication protein; Includes: RecName:... Citrus lepro... NA 686950 42.7 42.7 14% 0.013 28.46 2512 Q1KZ59.1 Alignments: >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Getah virus] Sequence ID: Q5Y389.3 Length: 2467 Range 1: 535 to 1332 Score:1684 bits(4361), Expect:0.0, Method:Compositional matrix adjust., Identities:798/798(100%), Positives:798/798(100%), Gaps:0/798(0%) Query 1 GVVETPRNALKVTPQAHDHLIGSYLILSPQTVLKSEKLAPIHPLAEQVTVMTHSGRSGRY 60 GVVETPRNALKVTPQAHDHLIGSYLILSPQTVLKSEKLAPIHPLAEQVTVMTHSGRSGRY Sbjct 535 GVVETPRNALKVTPQAHDHLIGSYLILSPQTVLKSEKLAPIHPLAEQVTVMTHSGRSGRY 594 Query 61 PVDKYDGRVLIPTGAAIPVSEFQALSESATMVYNEREFINRKLHHIALYGPALNTDEESY 120 PVDKYDGRVLIPTGAAIPVSEFQALSESATMVYNEREFINRKLHHIALYGPALNTDEESY Sbjct 595 PVDKYDGRVLIPTGAAIPVSEFQALSESATMVYNEREFINRKLHHIALYGPALNTDEESY 654 Query 121 EKVRAERAETEYVFDVDKKACIKKEEASGLVLTGDLINPPFHEFAYEGLKIRPAAPYHTT 180 EKVRAERAETEYVFDVDKKACIKKEEASGLVLTGDLINPPFHEFAYEGLKIRPAAPYHTT Sbjct 655 EKVRAERAETEYVFDVDKKACIKKEEASGLVLTGDLINPPFHEFAYEGLKIRPAAPYHTT 714 Query 181 IIGVFGVPGSGKSAIIKNMVTTRDLVASGKKENCQEIMNDVKRQRGLDVTARTVDSILLN 240 IIGVFGVPGSGKSAIIKNMVTTRDLVASGKKENCQEIMNDVKRQRGLDVTARTVDSILLN Sbjct 715 IIGVFGVPGSGKSAIIKNMVTTRDLVASGKKENCQEIMNDVKRQRGLDVTARTVDSILLN 774 Query 241 GCKKGVENLYVDEAFACHSGTLLALIALVRPSGKVVLCGDPKQCGFFNLMQLKVHYNHNI 300 GCKKGVENLYVDEAFACHSGTLLALIALVRPSGKVVLCGDPKQCGFFNLMQLKVHYNHNI Sbjct 775 GCKKGVENLYVDEAFACHSGTLLALIALVRPSGKVVLCGDPKQCGFFNLMQLKVHYNHNI 834 Query 301 CTRVLHKSISRRCTLPVTAIVSTLHYQGKMRTTNRCNTPIQIDTTGSSKPASGDIVLTCF 360 CTRVLHKSISRRCTLPVTAIVSTLHYQGKMRTTNRCNTPIQIDTTGSSKPASGDIVLTCF Sbjct 835 CTRVLHKSISRRCTLPVTAIVSTLHYQGKMRTTNRCNTPIQIDTTGSSKPASGDIVLTCF 894 Query 361 RGWVKQLQIDYRGHEVMTAAASQGLTRKGVYAVRQKVNENPLYSPLSEHVNVLLTRTENR 420 RGWVKQLQIDYRGHEVMTAAASQGLTRKGVYAVRQKVNENPLYSPLSEHVNVLLTRTENR Sbjct 895 RGWVKQLQIDYRGHEVMTAAASQGLTRKGVYAVRQKVNENPLYSPLSEHVNVLLTRTENR 954 Query 421 LVWKTLSGDPWIKVLTNVPRGDFSATLEEWHEEHDGIMRVLNERPAEVDPFQNKAKVCWA 480 LVWKTLSGDPWIKVLTNVPRGDFSATLEEWHEEHDGIMRVLNERPAEVDPFQNKAKVCWA Sbjct 955 LVWKTLSGDPWIKVLTNVPRGDFSATLEEWHEEHDGIMRVLNERPAEVDPFQNKAKVCWA 1014 Query 481 KCLVQVLETAGIRMTADEWNTILAFREDRAYSPEVALNEICTRYYGVDLDSGLFSAQSVS 540 KCLVQVLETAGIRMTADEWNTILAFREDRAYSPEVALNEICTRYYGVDLDSGLFSAQSVS Sbjct 1015 KCLVQVLETAGIRMTADEWNTILAFREDRAYSPEVALNEICTRYYGVDLDSGLFSAQSVS 1074 Query 541 LFYENNHWDNRPGGRMYGFNHEVARKYAARFPFLRGNMNSGLQLNVPERKLQPFSAECNI 600 LFYENNHWDNRPGGRMYGFNHEVARKYAARFPFLRGNMNSGLQLNVPERKLQPFSAECNI Sbjct 1075 LFYENNHWDNRPGGRMYGFNHEVARKYAARFPFLRGNMNSGLQLNVPERKLQPFSAECNI 1134 Query 601 VPSNRRLPHALVTSYQQCRGERVEWLLKKIPGHQMLLVSEYNLVIPHKRVFWIAPPRVSG 660 VPSNRRLPHALVTSYQQCRGERVEWLLKKIPGHQMLLVSEYNLVIPHKRVFWIAPPRVSG Sbjct 1135 VPSNRRLPHALVTSYQQCRGERVEWLLKKIPGHQMLLVSEYNLVIPHKRVFWIAPPRVSG 1194 Query 661 ADRTYDLDLGLPMDAGRYDLVFVNIHTEYRQHHYQQCVDHSMRLQMLGGDSLHLLRPGGS 720 ADRTYDLDLGLPMDAGRYDLVFVNIHTEYRQHHYQQCVDHSMRLQMLGGDSLHLLRPGGS Sbjct 1195 ADRTYDLDLGLPMDAGRYDLVFVNIHTEYRQHHYQQCVDHSMRLQMLGGDSLHLLRPGGS 1254 Query 721 LLMRAYGYADRVSEMVVTALARKFSAFRVLRPACVTSNTEVFLLFSNFDNGRRAVTLHQA 780 LLMRAYGYADRVSEMVVTALARKFSAFRVLRPACVTSNTEVFLLFSNFDNGRRAVTLHQA Sbjct 1255 LLMRAYGYADRVSEMVVTALARKFSAFRVLRPACVTSNTEVFLLFSNFDNGRRAVTLHQA 1314 Query 781 NQKLSSMYACNGLHTAGC 798 NQKLSSMYACNGLHTAGC Sbjct 1315 NQKLSSMYACNGLHTAGC 1332 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Sagiyama virus] Sequence ID: Q9JGL0.3 Length: 2467 Range 1: 535 to 1332 Score:1677 bits(4342), Expect:0.0, Method:Compositional matrix adjust., Identities:795/798(99%), Positives:796/798(99%), Gaps:0/798(0%) Query 1 GVVETPRNALKVTPQAHDHLIGSYLILSPQTVLKSEKLAPIHPLAEQVTVMTHSGRSGRY 60 GVVETPRNALKVTPQAHDHLIGSYLILSPQTVLKSEKLAPIHPLAEQVTVMTHSGRSGRY Sbjct 535 GVVETPRNALKVTPQAHDHLIGSYLILSPQTVLKSEKLAPIHPLAEQVTVMTHSGRSGRY 594 Query 61 PVDKYDGRVLIPTGAAIPVSEFQALSESATMVYNEREFINRKLHHIALYGPALNTDEESY 120 PVDKYDGRVLIPTGAAIPVSEFQALSESATMVYNEREFINRKLHHIALYGPALNTDEESY Sbjct 595 PVDKYDGRVLIPTGAAIPVSEFQALSESATMVYNEREFINRKLHHIALYGPALNTDEESY 654 Query 121 EKVRAERAETEYVFDVDKKACIKKEEASGLVLTGDLINPPFHEFAYEGLKIRPAAPYHTT 180 EKVRAERAETEYVFDVDKKACIKKEEASGLVLTGDLINPPFHEFAYEGLKIRPAAPYHTT Sbjct 655 EKVRAERAETEYVFDVDKKACIKKEEASGLVLTGDLINPPFHEFAYEGLKIRPAAPYHTT 714 Query 181 IIGVFGVPGSGKSAIIKNMVTTRDLVASGKKENCQEIMNDVKRQRGLDVTARTVDSILLN 240 IIGVFGVPGSGKSAIIKNMVTTRDLVASGKKENCQEIMNDVKRQRGLDVTARTVDSILLN Sbjct 715 IIGVFGVPGSGKSAIIKNMVTTRDLVASGKKENCQEIMNDVKRQRGLDVTARTVDSILLN 774 Query 241 GCKKGVENLYVDEAFACHSGTLLALIALVRPSGKVVLCGDPKQCGFFNLMQLKVHYNHNI 300 GCK+GVENLYVDEAFACHSGTLLALIALVRPSGKVVLCGDPKQCGFFNLMQLKVHYNHNI Sbjct 775 GCKRGVENLYVDEAFACHSGTLLALIALVRPSGKVVLCGDPKQCGFFNLMQLKVHYNHNI 834 Query 301 CTRVLHKSISRRCTLPVTAIVSTLHYQGKMRTTNRCNTPIQIDTTGSSKPASGDIVLTCF 360 CTRVLHKSISRRCTLPVTAIVSTLHYQGKMRTTNRCNTPIQIDTTGSSKPASGDIVLTCF Sbjct 835 CTRVLHKSISRRCTLPVTAIVSTLHYQGKMRTTNRCNTPIQIDTTGSSKPASGDIVLTCF 894 Query 361 RGWVKQLQIDYRGHEVMTAAASQGLTRKGVYAVRQKVNENPLYSPLSEHVNVLLTRTENR 420 RGWVKQLQIDYRGHEVMTAAASQGLTRKGVYAVRQKVNENPLYSPLSEHVNVLLTRTENR Sbjct 895 RGWVKQLQIDYRGHEVMTAAASQGLTRKGVYAVRQKVNENPLYSPLSEHVNVLLTRTENR 954 Query 421 LVWKTLSGDPWIKVLTNVPRGDFSATLEEWHEEHDGIMRVLNERPAEVDPFQNKAKVCWA 480 LVWKTLSGDPWIKVLTNVPRGDFSATLEEW EEHDGIMRVLNERPAEVDPFQNKAKVCWA Sbjct 955 LVWKTLSGDPWIKVLTNVPRGDFSATLEEWQEEHDGIMRVLNERPAEVDPFQNKAKVCWA 1014 Query 481 KCLVQVLETAGIRMTADEWNTILAFREDRAYSPEVALNEICTRYYGVDLDSGLFSAQSVS 540 KCLVQVLETAGIRMTADEWNTILAFREDRAYSPEVALNEICTRYYGVDLDSGLFSAQSVS Sbjct 1015 KCLVQVLETAGIRMTADEWNTILAFREDRAYSPEVALNEICTRYYGVDLDSGLFSAQSVS 1074 Query 541 LFYENNHWDNRPGGRMYGFNHEVARKYAARFPFLRGNMNSGLQLNVPERKLQPFSAECNI 600 LFYENNHWDNRPGGRMYGFNHEVARKYAARFPFLRGNMNSGLQLNVPERKLQPFSAECNI Sbjct 1075 LFYENNHWDNRPGGRMYGFNHEVARKYAARFPFLRGNMNSGLQLNVPERKLQPFSAECNI 1134 Query 601 VPSNRRLPHALVTSYQQCRGERVEWLLKKIPGHQMLLVSEYNLVIPHKRVFWIAPPRVSG 660 VPSNRRLPHALVTSYQQCRGERVEWLLKKIPGHQMLLVSEYNL IPHKRVFWIAPPRVSG Sbjct 1135 VPSNRRLPHALVTSYQQCRGERVEWLLKKIPGHQMLLVSEYNLAIPHKRVFWIAPPRVSG 1194 Query 661 ADRTYDLDLGLPMDAGRYDLVFVNIHTEYRQHHYQQCVDHSMRLQMLGGDSLHLLRPGGS 720 ADRTYDLDLGLPMDAGRYDLVFVNIHTEYRQHHYQQCVDHSMRLQMLGGDSLHLLRPGGS Sbjct 1195 ADRTYDLDLGLPMDAGRYDLVFVNIHTEYRQHHYQQCVDHSMRLQMLGGDSLHLLRPGGS 1254 Query 721 LLMRAYGYADRVSEMVVTALARKFSAFRVLRPACVTSNTEVFLLFSNFDNGRRAVTLHQA 780 LLMRAYGYADRVSEMVVTALARKFSAFRVLRPACVTSNTEVFLLFSNFDNGRRAVTLHQA Sbjct 1255 LLMRAYGYADRVSEMVVTALARKFSAFRVLRPACVTSNTEVFLLFSNFDNGRRAVTLHQA 1314 Query 781 NQKLSSMYACNGLHTAGC 798 NQKLSSMYACNGLHTAGC Sbjct 1315 NQKLSSMYACNGLHTAGC 1332 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Ross river virus (STRAIN NB5092)] Sequence ID: P13887.2 Length: 2480 Range 1: 534 to 1331 Score:1533 bits(3970), Expect:0.0, Method:Compositional matrix adjust., Identities:709/798(89%), Positives:764/798(95%), Gaps:0/798(0%) Query 1 GVVETPRNALKVTPQAHDHLIGSYLILSPQTVLKSEKLAPIHPLAEQVTVMTHSGRSGRY 60 GVVETPRNALKVTPQ D LIG+YLILSPQTVLKSEKL PIHPLAEQVT+MTHSGRSGRY Sbjct 534 GVVETPRNALKVTPQERDQLIGAYLILSPQTVLKSEKLTPIHPLAEQVTIMTHSGRSGRY 593 Query 61 PVDKYDGRVLIPTGAAIPVSEFQALSESATMVYNEREFINRKLHHIALYGPALNTDEESY 120 PVD+YDGRVL+PTGAAIPVSEFQALSESATMVYNEREFINRKLHHIALYGPALNTDEE+Y Sbjct 594 PVDRYDGRVLVPTGAAIPVSEFQALSESATMVYNEREFINRKLHHIALYGPALNTDEENY 653 Query 121 EKVRAERAETEYVFDVDKKACIKKEEASGLVLTGDLINPPFHEFAYEGLKIRPAAPYHTT 180 EKVRAERAE EYVFDVDK+ C+K+E+ASGLVL GDLINPPFHEFAYEGLKIRPA P+ TT Sbjct 654 EKVRAERAEAEYVFDVDKRTCVKREDASGLVLVGDLINPPFHEFAYEGLKIRPATPFQTT 713 Query 181 IIGVFGVPGSGKSAIIKNMVTTRDLVASGKKENCQEIMNDVKRQRGLDVTARTVDSILLN 240 +IGVFGVPGSGKSAIIK++VTTRDLVASGKKENCQEI+NDVK+QRGLDVTARTVDSILLN Sbjct 714 VIGVFGVPGSGKSAIIKSVVTTRDLVASGKKENCQEIVNDVKKQRGLDVTARTVDSILLN 773 Query 241 GCKKGVENLYVDEAFACHSGTLLALIALVRPSGKVVLCGDPKQCGFFNLMQLKVHYNHNI 300 GC++GVENLYVDEAFACHSGTLLALIA+V+P+GKV+LCGDPKQCGFFNLMQLKV++NH+I Sbjct 774 GCRRGVENLYVDEAFACHSGTLLALIAMVKPTGKVILCGDPKQCGFFNLMQLKVNFNHDI 833 Query 301 CTRVLHKSISRRCTLPVTAIVSTLHYQGKMRTTNRCNTPIQIDTTGSSKPASGDIVLTCF 360 CT+VLHKSISRRCTLP+TAIVSTLHYQGKMRTTN C+ PIQIDTTG++KPA GDIVLTCF Sbjct 834 CTQVLHKSISRRCTLPITAIVSTLHYQGKMRTTNLCSAPIQIDTTGTTKPAKGDIVLTCF 893 Query 361 RGWVKQLQIDYRGHEVMTAAASQGLTRKGVYAVRQKVNENPLYSPLSEHVNVLLTRTENR 420 R WVKQLQIDYRGHEVMTAAASQGLTRKGVYAVRQKVNENPLY+P SEHVNVLLTRTENR Sbjct 894 RXWVKQLQIDYRGHEVMTAAASQGLTRKGVYAVRQKVNENPLYAPSSEHVNVLLTRTENR 953 Query 421 LVWKTLSGDPWIKVLTNVPRGDFSATLEEWHEEHDGIMRVLNERPAEVDPFQNKAKVCWA 480 LVWKTLSGDPWIKVLTN+P+GDFSATLEEW EEHD IM L ER VDPFQNKAKVCWA Sbjct 954 LVWKTLSGDPWIKVLTNIPKGDFSATLEEWQEEHDNIMNALRERSTAVDPFQNKAKVCWA 1013 Query 481 KCLVQVLETAGIRMTADEWNTILAFREDRAYSPEVALNEICTRYYGVDLDSGLFSAQSVS 540 KCLVQVLETAGIRMTA+EW+T+LAFREDRAYSPEVALNEICT+YYGVDLDSGLFSAQSVS Sbjct 1014 KCLVQVLETAGIRMTAEEWDTVLAFREDRAYSPEVALNEICTKYYGVDLDSGLFSAQSVS 1073 Query 541 LFYENNHWDNRPGGRMYGFNHEVARKYAARFPFLRGNMNSGLQLNVPERKLQPFSAECNI 600 L+YENNHWDNRPGGRMYGFN EVARK+ R+PFLRG M+SGLQ+NVPERK+QPF+AECNI Sbjct 1074 LYYENNHWDNRPGGRMYGFNREVARKFEQRYPFLRGKMDSGLQVNVPERKVQPFNAECNI 1133 Query 601 VPSNRRLPHALVTSYQQCRGERVEWLLKKIPGHQMLLVSEYNLVIPHKRVFWIAPPRVSG 660 + NRRLPHALVTSYQQCRGERVEWLLKK+PG+ +LLVSEYNL +PHKRVFWIAPP VSG Sbjct 1134 LLLNRRLPHALVTSYQQCRGERVEWLLKKLPGYHLLLVSEYNLALPHKRVFWIAPPHVSG 1193 Query 661 ADRTYDLDLGLPMDAGRYDLVFVNIHTEYRQHHYQQCVDHSMRLQMLGGDSLHLLRPGGS 720 ADR YDLDLGLP++AGRYDLVFVNIHTEYR HHYQQCVDHSM+LQMLGGDSLHLL PGGS Sbjct 1194 ADRIYDLDLGLPLNAGRYDLVFVNIHTEYRTHHYQQCVDHSMKLQMLGGDSLHLLXPGGS 1253 Query 721 LLMRAYGYADRVSEMVVTALARKFSAFRVLRPACVTSNTEVFLLFSNFDNGRRAVTLHQA 780 LL+RAYGYADRVSEMVVTALARKFSAFRVLRPACVTSNTEVFLLF+NFDNGRRAVTLHQA Sbjct 1254 LLIRAYGYADRVSEMVVTALARKFSAFRVLRPACVTSNTEVFLLFTNFDNGRRAVTLHQA 1313 Query 781 NQKLSSMYACNGLHTAGC 798 NQ+LSSM+ACNGLHTAGC Sbjct 1314 NQRLSSMFACNGLHTAGC 1331 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Semliki Forest virus] Sequence ID: P08411.2 Length: 2432 Range 1: 538 to 1336 Score:1313 bits(3398), Expect:0.0, Method:Compositional matrix adjust., Identities:608/799(76%), Positives:702/799(87%), Gaps:1/799(0%) Query 1 GVVETPRNALKVTPQAHDHLIGSYLILSPQTVLKSEKLAPIHPLAEQVTVMTHSGRSGRY 60 GVVETPR+ALKVT Q +D L+G+Y++LSPQTVLKS KLAP+HPLAEQV ++TH+GR+GRY Sbjct 538 GVVETPRSALKVTAQPNDVLLGNYVVLSPQTVLKSSKLAPVHPLAEQVKIITHNGRAGRY 597 Query 61 PVDKYDGRVLIPTGAAIPVSEFQALSESATMVYNEREFINRKLHHIALYGPALNTDEESY 120 VD YDGRVL+P G+AIPV EFQALSESATMVYNEREF+NRKL+HIA++GP+LNTDEE+Y Sbjct 598 QVDGYDGRVLLPCGSAIPVPEFQALSESATMVYNEREFVNRKLYHIAVHGPSLNTDEENY 657 Query 121 EKVRAERAETEYVFDVDKKACIKKEEASGLVLTGDLINPPFHEFAYEGLKIRPAAPYHTT 180 EKVRAER + EYVFDVDKK C+K+EEASGLVL G+L NPPFHEFAYEGLKIRP+APY TT Sbjct 658 EKVRAERTDAEYVFDVDKKCCVKREEASGLVLVGELTNPPFHEFAYEGLKIRPSAPYKTT 717 Query 181 IIGVFGVPGSGKSAIIKNMVTTRDLVASGKKENCQEIMNDVKRQRGLDVTARTVDSILLN 240 ++GVFGVPGSGKSAIIK++VT DLV SGKKENCQEI+NDVK+ RGLD+ A+TVDSILLN Sbjct 718 VVGVFGVPGSGKSAIIKSLVTKHDLVTSGKKENCQEIVNDVKKHRGLDIQAKTVDSILLN 777 Query 241 GCKKGVENLYVDEAFACHSGTLLALIALVRPSGKVVLCGDPKQCGFFNLMQLKVHYNHNI 300 GC++ V+ LYVDEAFACHSGTLLALIALV+P KVVLCGDPKQCGFFN+MQLKV++NHNI Sbjct 778 GCRRAVDILYVDEAFACHSGTLLALIALVKPRSKVVLCGDPKQCGFFNMMQLKVNFNHNI 837 Query 301 CTRVLHKSISRRCTLPVTAIVSTLHYQGKMRTTNRCNTPIQIDTTGSSKPASGDIVLTCF 360 CT V HKSISRRCT PVTAIVSTLHY GKMRTTN CN PI IDTTG +KP GDIVLTCF Sbjct 838 CTEVCHKSISRRCTRPVTAIVSTLHYGGKMRTTNPCNKPIIIDTTGQTKPKPGDIVLTCF 897 Query 361 RGWVKQLQIDYRGHEVMTAAASQGLTRKGVYAVRQKVNENPLYSPLSEHVNVLLTRTENR 420 RGWVKQLQ+DYRGHEVMTAAASQGLTRKGVYAVRQKVNENPLY+P SEHVNVLLTRTE+R Sbjct 898 RGWVKQLQLDYRGHEVMTAAASQGLTRKGVYAVRQKVNENPLYAPASEHVNVLLTRTEDR 957 Query 421 LVWKTLSGDPWIKVLTNVPRGDFSATLEEWHEEHDGIMRVLNERPAEVDPFQNKAKVCWA 480 LVWKTL+GDPWIKVL+N+P+G+F+ATLEEW EEHD IM+V+ A VD FQNKA VCWA Sbjct 958 LVWKTLAGDPWIKVLSNIPQGNFTATLEEWQEEHDKIMKVIEGPAAPVDAFQNKANVCWA 1017 Query 481 KCLVQVLETAGIRMTADEWNTIL-AFREDRAYSPEVALNEICTRYYGVDLDSGLFSAQSV 539 K LV VL+TAGIR+TA+EW+TI+ AF+EDRAYSP VALNEICT+YYGVDLDSGLFSA V Sbjct 1018 KSLVPVLDTAGIRLTAEEWSTIITAFKEDRAYSPVVALNEICTKYYGVDLDSGLFSAPKV 1077 Query 540 SLFYENNHWDNRPGGRMYGFNHEVARKYAARFPFLRGNMNSGLQLNVPERKLQPFSAECN 599 SL+YENNHWDNRPGGRMYGFN A + AR FL+G ++G Q + ERK+QP S N Sbjct 1078 SLYYENNHWDNRPGGRMYGFNAATAARLEARHTFLKGQWHTGKQAVIAERKIQPLSVLDN 1137 Query 600 IVPSNRRLPHALVTSYQQCRGERVEWLLKKIPGHQMLLVSEYNLVIPHKRVFWIAPPRVS 659 ++P NRRLPHALV Y+ +G RVEWL+ K+ G+ +LLVSEYNL +P +RV W++P V+ Sbjct 1138 VIPINRRLPHALVAEYKTVKGSRVEWLVNKVRGYHVLLVSEYNLALPRRRVTWLSPLNVT 1197 Query 660 GADRTYDLDLGLPMDAGRYDLVFVNIHTEYRQHHYQQCVDHSMRLQMLGGDSLHLLRPGG 719 GADR YDL LGLP DAGR+DLVFVNIHTE+R HHYQQCVDH+M+LQMLGGD+L LL+PGG Sbjct 1198 GADRCYDLSLGLPADAGRFDLVFVNIHTEFRIHHYQQCVDHAMKLQMLGGDALRLLKPGG 1257 Query 720 SLLMRAYGYADRVSEMVVTALARKFSAFRVLRPACVTSNTEVFLLFSNFDNGRRAVTLHQ 779 SLLMRAYGYAD++SE VV++L+RKFS+ RVLRP CVTSNTEVFLLFSNFDNG+R TLHQ Sbjct 1258 SLLMRAYGYADKISEAVVSSLSRKFSSARVLRPDCVTSNTEVFLLFSNFDNGKRPSTLHQ 1317 Query 780 ANQKLSSMYACNGLHTAGC 798 N KLS++YA +HTAGC Sbjct 1318 MNTKLSAVYAGEAMHTAGC 1336 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Mayaro virus (strain Brazil)] Sequence ID: Q8QZ73.3 Length: 2437 Range 1: 537 to 1334 Score:1269 bits(3283), Expect:0.0, Method:Compositional matrix adjust., Identities:597/799(75%), Positives:679/799(84%), Gaps:2/799(0%) Query 1 GVVETPRNALKVTPQAHDHLIGSYLILSPQTVLKSEKLAPIHPLAEQVTVMTHSGRSGRY 60 GVVETPRNALKVTPQ D ++GSYL+LSPQTVLKS KL +HPLAE V ++TH GR+GRY Sbjct 537 GVVETPRNALKVTPQDRDTMVGSYLVLSPQTVLKSVKLQALHPLAESVKIITHKGRAGRY 596 Query 61 PVDKYDGRVLIPTGAAIPVSEFQALSESATMVYNEREFINRKLHHIALYGPALNTDEESY 120 VD YDGRVL+PTGAAIPV +FQALSESATMVYNEREFINRKL+HIA++G ALNTDEE Y Sbjct 597 QVDAYDGRVLLPTGAAIPVPDFQALSESATMVYNEREFINRKLYHIAVHGAALNTDEEGY 656 Query 121 EKVRAERAETEYVFDVDKKACIKKEEASGLVLTGDLINPPFHEFAYEGLKIRPAAPYHTT 180 EKVRAE + EYV+DVD+K C+K+EEA GLV+ GDLINPPFHEFAYEGLK RPAAPY TT Sbjct 657 EKVRAESTDAEYVYDVDRKQCVKREEAEGLVMIGDLINPPFHEFAYEGLKRRPAAPYKTT 716 Query 181 IIGVFGVPGSGKSAIIKNMVTTRDLVASGKKENCQEIMNDVKRQRGLDVTARTVDSILLN 240 ++GVFGVPGSGKS IIK++VT DLVASGKKENCQEIM DVKR R LD+TA+TVDS+LLN Sbjct 717 VVGVFGVPGSGKSGIIKSLVTRGDLVASGKKENCQEIMLDVKRYRDLDMTAKTVDSVLLN 776 Query 241 GCKKGVENLYVDEAFACHSGTLLALIALVRPSGKVVLCGDPKQCGFFNLMQLKVHYNHNI 300 G K+ V+ LYVDEAFACH+GTLLALIA VRP KVVLCGDPKQCGFFNLMQL+V++NHNI Sbjct 777 GVKQTVDVLYVDEAFACHAGTLLALIATVRPRKKVVLCGDPKQCGFFNLMQLQVNFNHNI 836 Query 301 CTRVLHKSISRRCTLPVTAIVSTLHYQGKMRTTNRCNTPIQIDTTGSSKPASGDIVLTCF 360 CT V HKSISRRCTLP+TAIVSTLHY+G+MRTTN N P+ IDTTG +KP DIVLTCF Sbjct 837 CTEVDHKSISRRCTLPITAIVSTLHYEGRMRTTNPYNKPVIIDTTGQTKPNREDIVLTCF 896 Query 361 RGWVKQLQIDYRGHEVMTAAASQGLTRKGVYAVRQKVNENPLYSPLSEHVNVLLTRTENR 420 RGWVKQLQ+DYRGHEVMTAAASQGLTRKGVYAVR KVNENPLY+ SEHVNVLLTRTE R Sbjct 897 RGWVKQLQLDYRGHEVMTAAASQGLTRKGVYAVRMKVNENPLYAQSSEHVNVLLTRTEGR 956 Query 421 LVWKTLSGDPWIKVLTNVPRGDFSATLEEWHEEHDGIMRVLNERPAEVDPFQNKAKVCWA 480 LVWKTLSGDPWIK L+N+P+G+F+ATLE+W EHD IMR + + A +D FQNKAKVCWA Sbjct 957 LVWKTLSGDPWIKTLSNIPKGNFTATLEDWQREHDTIMRAITQEAAPLDVFQNKAKVCWA 1016 Query 481 KCLVQVLETAGIRMTADEWNT-ILAFREDRAYSPEVALNEICTRYYGVDLDSGLFSAQSV 539 KCLV VLETAGI+++A +W+ ILAF+EDRAYSPEVALNEICT+ YGVDLDSGLFSA V Sbjct 1017 KCLVPVLETAGIKLSATDWSAIILAFKEDRAYSPEVALNEICTKIYGVDLDSGLFSAPRV 1076 Query 540 SLFYENNHWDNRPGGRMYGFNHEVARKYAARFPFLRGNMNSGLQLNVPERKLQPFSAECN 599 SL Y NHWDN PGGRMYGF+ E A + + PF RG SG Q+ V ERK QP CN Sbjct 1077 SLHYTTNHWDNSPGGRMYGFSVEAANRLEQQHPFYRGRWASG-QVLVAERKTQPIDVTCN 1135 Query 600 IVPSNRRLPHALVTSYQQCRGERVEWLLKKIPGHQMLLVSEYNLVIPHKRVFWIAPPRVS 659 ++P NRRLPH LVT Y +GERVEWL+ KIPG+ +LLVSEYNL++P ++V WIAPP V+ Sbjct 1136 LIPFNRRLPHTLVTEYHPIKGERVEWLVNKIPGYHVLLVSEYNLILPRRKVTWIAPPTVT 1195 Query 660 GADRTYDLDLGLPMDAGRYDLVFVNIHTEYRQHHYQQCVDHSMRLQMLGGDSLHLLRPGG 719 GAD TYDLDLGLP +AGRYDLVFVN+HT YR HHYQQCVDH+M+LQMLGGD+L+LL+PGG Sbjct 1196 GADLTYDLDLGLPPNAGRYDLVFVNMHTPYRLHHYQQCVDHAMKLQMLGGDALYLLKPGG 1255 Query 720 SLLMRAYGYADRVSEMVVTALARKFSAFRVLRPACVTSNTEVFLLFSNFDNGRRAVTLHQ 779 SLL+ Y YADR SE VVTALAR+FS+FR + CVTSNTEVFLLF+NFDNGRR VTLHQ Sbjct 1256 SLLLSTYAYADRTSEAVVTALARRFSSFRAVTVRCVTSNTEVFLLFTNFDNGRRTVTLHQ 1315 Query 780 ANQKLSSMYACNGLHTAGC 798 N KLSS+YA L AGC Sbjct 1316 TNGKLSSIYAGTVLQAAGC 1334 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [O'nyong-nyong virus strain Gulu] Sequence ID: P13886.2 Length: 2514 Range 1: 536 to 1333 Score:1200 bits(3105), Expect:0.0, Method:Compositional matrix adjust., Identities:559/800(70%), Positives:660/800(82%), Gaps:4/800(0%) Query 1 GVVETPRNALKVTPQAHDHLIGSYLILSPQTVLKSEKLAPIHPLAEQVTVMTHSGRSGRY 60 G+VETPR A+KVT Q D ++G YL+L+PQ VL+S+KL+ IH LAEQV THSGR+GRY Sbjct 536 GIVETPRGAIKVTAQPSDLVVGEYLVLTPQAVLRSQKLSLIHALAEQVKTCTHSGRAGRY 595 Query 61 PVDKYDGRVLIPTGAAIPVSEFQALSESATMVYNEREFINRKLHHIALYGPALNTDEESY 120 V+ YDGRVL+P+G AIP +FQ+LSESATMV+NEREF+NRKLHHIA++GPALNTDEESY Sbjct 596 AVEAYDGRVLVPSGYAIPQEDFQSLSESATMVFNEREFVNRKLHHIAMHGPALNTDEESY 655 Query 121 EKVRAERAETEYVFDVDKKACIKKEEASGLVLTGDLINPPFHEFAYEGLKIRPAAPYHTT 180 E VR E+ E EYV+DVD+K C K+EEA+GLVL GDL +PP+HEFAYEGLKIRPA PY T Sbjct 656 ELVRVEKTEHEYVYDVDQKKCCKREEATGLVLVGDLTSPPYHEFAYEGLKIRPACPYKTA 715 Query 181 IIGVFGVPGSGKSAIIKNMVTTRDLVASGKKENCQEIMNDVKRQRGLDVTARTVDSILLN 240 +IGVFGVPGSGKSAIIKN+VT +DLV SGKKENCQEI NDV RQR L+++ARTVDS+LLN Sbjct 716 VIGVFGVPGSGKSAIIKNLVTRQDLVTSGKKENCQEISNDVMRQRKLEISARTVDSLLLN 775 Query 241 GCKKGVENLYVDEAFACHSGTLLALIALVRPSGKVVLCGDPKQCGFFNLMQLKVHYNHNI 300 GC K VE LYVDEAFACHSGTLLALIA+VRP KVVLCGDPKQCGFFN+MQ+KV+YNHNI Sbjct 776 GCNKPVEVLYVDEAFACHSGTLLALIAMVRPRQKVVLCGDPKQCGFFNMMQMKVNYNHNI 835 Query 301 CTRVLHKSISRRCTLPVTAIVSTLHYQGKMRTTNRCNTPIQIDTTGSSKPASGDIVLTCF 360 CT+V HKSISRRCTLPVTAIVS+LHY+ KMRTTN N PI +DTTG +KP GD+VLTCF Sbjct 836 CTQVYHKSISRRCTLPVTAIVSSLHYESKMRTTNEYNQPIVVDTTGITKPEPGDLVLTCF 895 Query 361 RGWVKQLQIDYRGHEVMTAAASQGLTRKGVYAVRQKVNENPLYSPLSEHVNVLLTRTENR 420 RGWVKQLQIDYRG+EVMTAAASQGLTRKGVYAVRQKVNENPLY+P SEHVNVLLTRTE + Sbjct 896 RGWVKQLQIDYRGNEVMTAAASQGLTRKGVYAVRQKVNENPLYAPTSEHVNVLLTRTEGK 955 Query 421 LVWKTLSGDPWIKVLTNVPRGDFSATLEEWHEEHDGIMRVLNERPAEVDPFQNKAKVCWA 480 L WKTLSGDPWIK+L N P+GDF AT++EW EH IM + D FQNKA VCWA Sbjct 956 LTWKTLSGDPWIKILQNPPKGDFKATIKEWEAEHASIMAGICNHQMAFDTFQNKANVCWA 1015 Query 481 KCLVQVLETAGIRMTADEWNTIL-AFREDRAYSPEVALNEICTRYYGVDLDSGLFSAQSV 539 KCLV +L+TAGI+++ +W+ I+ AF+EDRAYSPEVALNEICTR YGVDLDSGLFS + Sbjct 1016 KCLVPILDTAGIKLSDRQWSQIVQAFKEDRAYSPEVALNEICTRIYGVDLDSGLFSKPLI 1075 Query 540 SLFYENNHWDNRPGGRMYGFNHEVARKYAARFPFLRGNMNSGLQLNVPERKLQPFSAECN 599 S++Y +NHWDNRPGG+M+GFN EVA ++PF +G N Q+ + RK+ F+ E N Sbjct 1076 SVYYADNHWDNRPGGKMFGFNPEVALMLEKKYPFTKGKWNINKQICITTRKVDEFNPETN 1135 Query 600 IVPSNRRLPHALVTSYQQCRGERVEWLLKKIPGHQMLLVSEYNLVIPHKRVFWIAPPRVS 659 I+P+NRRLPH+LV + RGER+EWL+ KI GH MLLVS +NL++P KRV W+AP Sbjct 1136 IIPANRRLPHSLVAEHHSVRGERMEWLVNKISGHHMLLVSGHNLILPTKRVTWVAPLGTR 1195 Query 660 GADRTYDLDLGLPMDAGRYDLVFVNIHTEYRQHHYQQCVDHSMRLQMLGGDSLHLLRPGG 719 GAD TY+L+LGLP GRYDLV +NIHT +R HHYQQCVDH+M+LQMLGGDSL LL+PGG Sbjct 1196 GADYTYNLELGLPATLGRYDLVVINIHTPFRIHHYQQCVDHAMKLQMLGGDSLRLLKPGG 1255 Query 720 SLLMRAYGYADRVSEMVVTALARKFSAFRVLRPACVTSNTEVFLLFSNFDNGRRAVTLHQ 779 SLL+RAYGYADR SE V++ L RKF + R L+P C+TSNTE+F LFS FDNGRR T H Sbjct 1256 SLLIRAYGYADRTSERVISVLGRKFRSSRALKPQCITSNTEMFFLFSRFDNGRRNFTTHV 1315 Query 780 ANQKLSSMYACNGLHT-AGC 798 N +L+++YA GL T AGC Sbjct 1316 MNNQLNAVYA--GLATRAGC 1333 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [O'nyong-nyong virus strain SG650] Sequence ID: O90368.1 Length: 2513 Range 1: 536 to 1333 Score:1199 bits(3102), Expect:0.0, Method:Compositional matrix adjust., Identities:558/800(70%), Positives:660/800(82%), Gaps:4/800(0%) Query 1 GVVETPRNALKVTPQAHDHLIGSYLILSPQTVLKSEKLAPIHPLAEQVTVMTHSGRSGRY 60 G+VETPR A+KVT Q D ++G YL+L+PQ VL+S+KL+ IH LAEQV THSGR+GRY Sbjct 536 GIVETPRGAIKVTAQPSDRVVGEYLVLTPQAVLRSQKLSLIHALAEQVKTCTHSGRAGRY 595 Query 61 PVDKYDGRVLIPTGAAIPVSEFQALSESATMVYNEREFINRKLHHIALYGPALNTDEESY 120 V+ YDGRVL+P+G AIP +FQ+LSESATMV+NEREF+NRKLHHIA++GPALNTDEESY Sbjct 596 AVEAYDGRVLVPSGYAIPQEDFQSLSESATMVFNEREFVNRKLHHIAMHGPALNTDEESY 655 Query 121 EKVRAERAETEYVFDVDKKACIKKEEASGLVLTGDLINPPFHEFAYEGLKIRPAAPYHTT 180 E VR E+ E EYV+DVD+K C K+EEA+GLVL GDL +PP+HEFAYEGLKIRPA PY T Sbjct 656 ELVRVEKTEHEYVYDVDQKKCCKREEATGLVLVGDLTSPPYHEFAYEGLKIRPACPYKTA 715 Query 181 IIGVFGVPGSGKSAIIKNMVTTRDLVASGKKENCQEIMNDVKRQRGLDVTARTVDSILLN 240 +IGVFGVPGSGKSAIIKN+VT +DLV SGKKENCQEI NDV RQR L+++ARTVDS+LLN Sbjct 716 VIGVFGVPGSGKSAIIKNLVTRQDLVTSGKKENCQEISNDVMRQRKLEISARTVDSLLLN 775 Query 241 GCKKGVENLYVDEAFACHSGTLLALIALVRPSGKVVLCGDPKQCGFFNLMQLKVHYNHNI 300 GC K VE LYVDEAFACHSGTLLALIA+VRP KVVLCGDPKQCGFFN+MQ+KV+YNHNI Sbjct 776 GCNKPVEVLYVDEAFACHSGTLLALIAMVRPRQKVVLCGDPKQCGFFNMMQMKVNYNHNI 835 Query 301 CTRVLHKSISRRCTLPVTAIVSTLHYQGKMRTTNRCNTPIQIDTTGSSKPASGDIVLTCF 360 CT+V HKSISRRCTLPVTAIVS+LHY+ KMRTTN N PI +DTTG +KP GD+VLTCF Sbjct 836 CTQVYHKSISRRCTLPVTAIVSSLHYESKMRTTNEYNQPIVVDTTGITKPEPGDLVLTCF 895 Query 361 RGWVKQLQIDYRGHEVMTAAASQGLTRKGVYAVRQKVNENPLYSPLSEHVNVLLTRTENR 420 RGWVKQLQIDYRG+EVMTAAASQGLTRKGVYAVRQKVNENPLY+ SEHVNVLLTRTE + Sbjct 896 RGWVKQLQIDYRGNEVMTAAASQGLTRKGVYAVRQKVNENPLYASTSEHVNVLLTRTEGK 955 Query 421 LVWKTLSGDPWIKVLTNVPRGDFSATLEEWHEEHDGIMRVLNERPAEVDPFQNKAKVCWA 480 L+WKTLSGDPWIK+L N P+G+F AT++EW EH IM + D FQNKA VCWA Sbjct 956 LIWKTLSGDPWIKILQNPPKGNFKATIKEWEAEHASIMAGICNHQMAFDTFQNKANVCWA 1015 Query 481 KCLVQVLETAGIRMTADEWNTIL-AFREDRAYSPEVALNEICTRYYGVDLDSGLFSAQSV 539 KCLV +L+TAGI+++ +W+ I+ AF+EDRAYSPEVALNEICTR YGVDLDSGLFS + Sbjct 1016 KCLVPILDTAGIKLSDRQWSQIVQAFKEDRAYSPEVALNEICTRIYGVDLDSGLFSKPLI 1075 Query 540 SLFYENNHWDNRPGGRMYGFNHEVARKYAARFPFLRGNMNSGLQLNVPERKLQPFSAECN 599 S++Y +NHWDNRPGG+M+GFN EVA ++PF +G N Q+ + RK+ F+ E N Sbjct 1076 SVYYADNHWDNRPGGKMFGFNPEVALMLEKKYPFTKGKWNINKQICITTRKVDEFNPETN 1135 Query 600 IVPSNRRLPHALVTSYQQCRGERVEWLLKKIPGHQMLLVSEYNLVIPHKRVFWIAPPRVS 659 I+P+NRRLPH+LV + RGER+EWL+ KI GH MLLVS YNL++P KRV W+AP Sbjct 1136 IIPANRRLPHSLVAEHHTVRGERMEWLVNKINGHHMLLVSGYNLILPTKRVTWVAPLGTR 1195 Query 660 GADRTYDLDLGLPMDAGRYDLVFVNIHTEYRQHHYQQCVDHSMRLQMLGGDSLHLLRPGG 719 GAD TY+L+LGLP GRYDLV +NIHT +R HHYQQCVDH+M+LQMLGGDSL LL+PGG Sbjct 1196 GADYTYNLELGLPATLGRYDLVVINIHTPFRIHHYQQCVDHAMKLQMLGGDSLRLLKPGG 1255 Query 720 SLLMRAYGYADRVSEMVVTALARKFSAFRVLRPACVTSNTEVFLLFSNFDNGRRAVTLHQ 779 SLL+RAYGYADR SE V++ L RKF + R L+P C+TSNTE+F LFS FDNGRR T H Sbjct 1256 SLLIRAYGYADRTSERVISVLGRKFRSSRALKPQCITSNTEMFFLFSRFDNGRRNFTTHV 1315 Query 780 ANQKLSSMYACNGLHT-AGC 798 N +L+++YA GL T AGC Sbjct 1316 MNNQLNAVYA--GLATRAGC 1333 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Igbo Ora virus] Sequence ID: O90370.1 Length: 2513 Range 1: 536 to 1333 Score:1198 bits(3100), Expect:0.0, Method:Compositional matrix adjust., Identities:558/800(70%), Positives:660/800(82%), Gaps:4/800(0%) Query 1 GVVETPRNALKVTPQAHDHLIGSYLILSPQTVLKSEKLAPIHPLAEQVTVMTHSGRSGRY 60 G+VETPR A+KVT Q D ++G YL+L+PQ VL+S+KL IH LAEQV THSGR+GRY Sbjct 536 GIVETPRGAIKVTAQPSDLVVGEYLVLTPQAVLRSQKLGLIHALAEQVKTCTHSGRAGRY 595 Query 61 PVDKYDGRVLIPTGAAIPVSEFQALSESATMVYNEREFINRKLHHIALYGPALNTDEESY 120 V+ YDGRVL+P+G AIP +FQ+LSESATMV+NEREF+NRKLHHIA++GPALNTDEESY Sbjct 596 AVEAYDGRVLVPSGYAIPQEDFQSLSESATMVFNEREFVNRKLHHIAMHGPALNTDEESY 655 Query 121 EKVRAERAETEYVFDVDKKACIKKEEASGLVLTGDLINPPFHEFAYEGLKIRPAAPYHTT 180 E VR E+ E EYV+DVD+K C K+EEA+GLVL GDL +PP+HEFAYEGLKIRPA PY T Sbjct 656 ELVRVEKTEHEYVYDVDQKKCCKREEATGLVLVGDLTSPPYHEFAYEGLKIRPACPYKTA 715 Query 181 IIGVFGVPGSGKSAIIKNMVTTRDLVASGKKENCQEIMNDVKRQRGLDVTARTVDSILLN 240 +IGVFGVPGSGKSAIIKN+VT +DLV SGKKENCQEI NDV RQR L+++ARTVDS+LLN Sbjct 716 VIGVFGVPGSGKSAIIKNLVTRQDLVTSGKKENCQEISNDVMRQRKLEISARTVDSLLLN 775 Query 241 GCKKGVENLYVDEAFACHSGTLLALIALVRPSGKVVLCGDPKQCGFFNLMQLKVHYNHNI 300 GC K VE LYVDEAFACHSGTLLALIA+VRP KVVLCGDPKQCGFFN+MQ+KV+YNHNI Sbjct 776 GCNKPVEVLYVDEAFACHSGTLLALIAMVRPRQKVVLCGDPKQCGFFNMMQMKVNYNHNI 835 Query 301 CTRVLHKSISRRCTLPVTAIVSTLHYQGKMRTTNRCNTPIQIDTTGSSKPASGDIVLTCF 360 CT+V HKSISRRCTLPVTAIVS+LHY+ KMRTTN N PI +DTTG++KP GD+VLTCF Sbjct 836 CTQVYHKSISRRCTLPVTAIVSSLHYESKMRTTNEYNQPIVVDTTGTTKPEPGDLVLTCF 895 Query 361 RGWVKQLQIDYRGHEVMTAAASQGLTRKGVYAVRQKVNENPLYSPLSEHVNVLLTRTENR 420 RGWVKQLQIDYRG+EVMTAAASQGLTRKGVYAVRQKVNENPLY+ SEHVNVLLTRTE + Sbjct 896 RGWVKQLQIDYRGNEVMTAAASQGLTRKGVYAVRQKVNENPLYASTSEHVNVLLTRTEGK 955 Query 421 LVWKTLSGDPWIKVLTNVPRGDFSATLEEWHEEHDGIMRVLNERPAEVDPFQNKAKVCWA 480 L+WKTLSGDPWIK+L N P+G+F AT++EW EH IM + D FQNKA VCWA Sbjct 956 LIWKTLSGDPWIKILQNPPKGNFKATIKEWEAEHASIMAGICNYQMAFDTFQNKANVCWA 1015 Query 481 KCLVQVLETAGIRMTADEWNTIL-AFREDRAYSPEVALNEICTRYYGVDLDSGLFSAQSV 539 KCLV +L+TAGI+++ +W+ I+ AF+EDRAYSPEVALNEICTR YGVDLDSGLFS + Sbjct 1016 KCLVPILDTAGIKLSDRQWSQIVQAFKEDRAYSPEVALNEICTRIYGVDLDSGLFSKPLI 1075 Query 540 SLFYENNHWDNRPGGRMYGFNHEVARKYAARFPFLRGNMNSGLQLNVPERKLQPFSAECN 599 S++Y +NHWDNRPGG+M+GFN EVA ++PF +G N Q+ + RK+ F+ E N Sbjct 1076 SVYYADNHWDNRPGGKMFGFNPEVALMLEKKYPFTKGKWNINKQICITTRKVDEFNPETN 1135 Query 600 IVPSNRRLPHALVTSYQQCRGERVEWLLKKIPGHQMLLVSEYNLVIPHKRVFWIAPPRVS 659 I+P+NRRLPH+LV + RGER+EWL+ KI GH MLLVS YNL++P KRV W+AP Sbjct 1136 IIPANRRLPHSLVAEHHSVRGERMEWLVNKINGHHMLLVSGYNLILPTKRVTWVAPLGTR 1195 Query 660 GADRTYDLDLGLPMDAGRYDLVFVNIHTEYRQHHYQQCVDHSMRLQMLGGDSLHLLRPGG 719 GAD TY+L+LGLP GRYDLV +NIHT +R HHYQQCVDH+M+LQMLGGDSL LL+PGG Sbjct 1196 GADYTYNLELGLPATLGRYDLVVINIHTPFRIHHYQQCVDHAMKLQMLGGDSLRLLKPGG 1255 Query 720 SLLMRAYGYADRVSEMVVTALARKFSAFRVLRPACVTSNTEVFLLFSNFDNGRRAVTLHQ 779 SLL+RAYGYADR SE V++ L RKF + R L+P C+TSNTE+F LFS FDNGRR T H Sbjct 1256 SLLIRAYGYADRTSERVISVLGRKFRSSRALKPQCITSNTEMFFLFSRFDNGRRNFTTHV 1315 Query 780 ANQKLSSMYACNGLHT-AGC 798 N +L+++YA GL T AGC Sbjct 1316 MNNQLNAVYA--GLATRAGC 1333 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Chikungunya virus strain Senegal 37997] Sequence ID: Q5XXP4.1 Length: 2474 Range 1: 536 to 1333 Score:1196 bits(3093), Expect:0.0, Method:Compositional matrix adjust., Identities:560/799(70%), Positives:656/799(82%), Gaps:2/799(0%) Query 1 GVVETPRNALKVTPQAHDHLIGSYLILSPQTVLKSEKLAPIHPLAEQVTVMTHSGRSGRY 60 G++ETPR A+KVT Q DH++G YL+LSPQTVL+S+KL+ IH LAEQV THSGR+GRY Sbjct 536 GIIETPRGAIKVTAQPTDHVVGEYLVLSPQTVLRSQKLSLIHALAEQVKTCTHSGRAGRY 595 Query 61 PVDKYDGRVLIPTGAAIPVSEFQALSESATMVYNEREFINRKLHHIALYGPALNTDEESY 120 V+ YDGR+L+P+G AI +FQ+LSESATMVYNEREF+NRKLHHIAL+GPALNTDEESY Sbjct 596 AVEAYDGRILVPSGYAISPEDFQSLSESATMVYNEREFVNRKLHHIALHGPALNTDEESY 655 Query 121 EKVRAERAETEYVFDVDKKACIKKEEASGLVLTGDLINPPFHEFAYEGLKIRPAAPYHTT 180 E VRAER E EYV+DVD++ C KKEEA+GLVL GDL NPP+HEFAYEGL+IRPA PY T Sbjct 656 ELVRAERTEHEYVYDVDQRRCCKKEEAAGLVLVGDLTNPPYHEFAYEGLRIRPACPYKTA 715 Query 181 IIGVFGVPGSGKSAIIKNMVTTRDLVASGKKENCQEIMNDVKRQRGLDVTARTVDSILLN 240 +IGVFGVPGSGKSAIIKN+VT +DLV SGKKENCQEI DV RQR L+++ARTVDS+LLN Sbjct 716 VIGVFGVPGSGKSAIIKNLVTRQDLVTSGKKENCQEISTDVMRQRNLEISARTVDSLLLN 775 Query 241 GCKKGVENLYVDEAFACHSGTLLALIALVRPSGKVVLCGDPKQCGFFNLMQLKVHYNHNI 300 GC + V+ LYVDEAFACHSGTLLALIALVRP KVVLCGDPKQCGFFN+MQ+KV+YNHNI Sbjct 776 GCNRPVDVLYVDEAFACHSGTLLALIALVRPRQKVVLCGDPKQCGFFNMMQMKVNYNHNI 835 Query 301 CTRVLHKSISRRCTLPVTAIVSTLHYQGKMRTTNRCNTPIQIDTTGSSKPASGDIVLTCF 360 CT+V HKSISRRCTLPVTAIVS+LHY+GKMRTTN N PI +DTTGS+KP GD+VLTCF Sbjct 836 CTQVYHKSISRRCTLPVTAIVSSLHYEGKMRTTNEYNKPIVVDTTGSTKPDPGDLVLTCF 895 Query 361 RGWVKQLQIDYRGHEVMTAAASQGLTRKGVYAVRQKVNENPLYSPLSEHVNVLLTRTENR 420 RGWVKQLQIDYRGHEVMTAAASQGLTRKGVYAVRQKVNENPLY+ SEHVNVLLTRTE + Sbjct 896 RGWVKQLQIDYRGHEVMTAAASQGLTRKGVYAVRQKVNENPLYASTSEHVNVLLTRTEGK 955 Query 421 LVWKTLSGDPWIKVLTNVPRGDFSATLEEWHEEHDGIMRVLNERPAEVDPFQNKAKVCWA 480 LVWKTLSGDPWIK L N P+G+F AT++EW EH IM + D FQNKA VCWA Sbjct 956 LVWKTLSGDPWIKTLQNPPKGNFKATIKEWEVEHASIMAGICNHQVTFDTFQNKANVCWA 1015 Query 481 KCLVQVLETAGIRMTADEWNTIL-AFREDRAYSPEVALNEICTRYYGVDLDSGLFSAQSV 539 K LV +LETAGI++ +W+ I+ AF+EDRAYSPEVALNEICTR YGVDLDSGLFS V Sbjct 1016 KSLVPILETAGIKLNDRQWSQIIQAFKEDRAYSPEVALNEICTRMYGVDLDSGLFSKPLV 1075 Query 540 SLFYENNHWDNRPGGRMYGFNHEVARKYAARFPFLRGNMNSGLQLNVPERKLQPFSAECN 599 S+ Y +NHWDNRPGG+M+GFN E A ++PF +G N+ Q+ V R+++ F+ N Sbjct 1076 SVHYADNHWDNRPGGKMFGFNPEAASILERKYPFTKGKWNTNKQICVTTRRIEDFNPNTN 1135 Query 600 IVPSNRRLPHALVTSYQQCRGERVEWLLKKIPGHQMLLVSEYNLVIPHKRVFWIAPPRVS 659 I+P+NRRLPH+LV ++ +GER+EWL+ KI GH +LLVS YNLV+P KRV W+AP + Sbjct 1136 IIPANRRLPHSLVAEHRPVKGERMEWLVNKINGHHVLLVSGYNLVLPTKRVTWVAPLGIR 1195 Query 660 GADRTYDLDLGLPMDAGRYDLVFVNIHTEYRQHHYQQCVDHSMRLQMLGGDSLHLLRPGG 719 GAD TY+L+LGLP GRYDLV +NIHT +R HHYQQCVDH+M+LQMLGGDSL LL+PGG Sbjct 1196 GADYTYNLELGLPATLGRYDLVIINIHTPFRIHHYQQCVDHAMKLQMLGGDSLRLLKPGG 1255 Query 720 SLLMRAYGYADRVSEMVVTALARKFSAFRVLRPACVTSNTEVFLLFSNFDNGRRAVTLHQ 779 SLL+RAYGYADR SE VV L RKF + R L+P CVTSNTE+F LFSNFDNGRR T H Sbjct 1256 SLLIRAYGYADRTSERVVCVLGRKFRSSRALKPPCVTSNTEMFFLFSNFDNGRRNFTTHV 1315 Query 780 ANQKLSSMYACNGLHTAGC 798 N +L++ + AGC Sbjct 1316 MNNQLNAAFVGQATR-AGC 1333 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Chikungunya virus strain S27-African prototype] Sequence ID: Q8JUX6.1 Length: 2474 Range 1: 536 to 1333 Score:1189 bits(3076), Expect:0.0, Method:Compositional matrix adjust., Identities:557/799(70%), Positives:654/799(81%), Gaps:2/799(0%) Query 1 GVVETPRNALKVTPQAHDHLIGSYLILSPQTVLKSEKLAPIHPLAEQVTVMTHSGRSGRY 60 G++ETPR A+KVT Q DH++G YL+LSPQTVL+S+KL+ IH LAEQV THSGR+GRY Sbjct 536 GIIETPRGAIKVTAQPTDHVVGEYLVLSPQTVLRSQKLSLIHALAEQVKTCTHSGRAGRY 595 Query 61 PVDKYDGRVLIPTGAAIPVSEFQALSESATMVYNEREFINRKLHHIALYGPALNTDEESY 120 V+ YDGRVL+P+G AI +FQ+LSESATMVYNEREF+NRKLHHIA++GPALNTDEESY Sbjct 596 AVEAYDGRVLVPSGYAISPEDFQSLSESATMVYNEREFVNRKLHHIAMHGPALNTDEESY 655 Query 121 EKVRAERAETEYVFDVDKKACIKKEEASGLVLTGDLINPPFHEFAYEGLKIRPAAPYHTT 180 E VRAER E EYV+DVD++ C KKEEA+GLVL GDL NPP+HEFAYEGLKIRPA PY Sbjct 656 ELVRAERTEHEYVYDVDQRRCCKKEEAAGLVLVGDLTNPPYHEFAYEGLKIRPACPYKIA 715 Query 181 IIGVFGVPGSGKSAIIKNMVTTRDLVASGKKENCQEIMNDVKRQRGLDVTARTVDSILLN 240 +IGVFGVPGSGKSAIIKN+VT +DLV SGKKENCQEI DV RQRGL+++ARTVDS+LLN Sbjct 716 VIGVFGVPGSGKSAIIKNLVTRQDLVTSGKKENCQEITTDVMRQRGLEISARTVDSLLLN 775 Query 241 GCKKGVENLYVDEAFACHSGTLLALIALVRPSGKVVLCGDPKQCGFFNLMQLKVHYNHNI 300 GC + V+ LYVDEAFACHSGTLLALIALVRP KVVLCGDPKQCGFFN+MQ+KV+YNHNI Sbjct 776 GCNRPVDVLYVDEAFACHSGTLLALIALVRPRQKVVLCGDPKQCGFFNMMQMKVNYNHNI 835 Query 301 CTRVLHKSISRRCTLPVTAIVSTLHYQGKMRTTNRCNTPIQIDTTGSSKPASGDIVLTCF 360 CT+V HKSISRRCTLPVTAIVS+LHY+GKMRTTN N PI +DTTGS+KP GD+VLTCF Sbjct 836 CTQVYHKSISRRCTLPVTAIVSSLHYEGKMRTTNEYNKPIVVDTTGSTKPDPGDLVLTCF 895 Query 361 RGWVKQLQIDYRGHEVMTAAASQGLTRKGVYAVRQKVNENPLYSPLSEHVNVLLTRTENR 420 RGWVKQLQIDYRGHEVMTAAASQGLTRKGVYAVRQKVNENPLY+ SEHVNVLLTRTE + Sbjct 896 RGWVKQLQIDYRGHEVMTAAASQGLTRKGVYAVRQKVNENPLYASTSEHVNVLLTRTEGK 955 Query 421 LVWKTLSGDPWIKVLTNVPRGDFSATLEEWHEEHDGIMRVLNERPAEVDPFQNKAKVCWA 480 LVWKTLSGDPWIK L N P+G+F AT++EW EH IM + D FQNKA VCWA Sbjct 956 LVWKTLSGDPWIKTLQNPPKGNFKATIKEWEVEHASIMAGICSHQMTFDTFQNKANVCWA 1015 Query 481 KCLVQVLETAGIRMTADEWNTIL-AFREDRAYSPEVALNEICTRYYGVDLDSGLFSAQSV 539 K LV +LETAGI++ +W+ I+ AF+ED+AYSPEVALNEICTR YGVDLDSGLFS V Sbjct 1016 KSLVPILETAGIKLNDRQWSQIIQAFKEDKAYSPEVALNEICTRMYGVDLDSGLFSKPLV 1075 Query 540 SLFYENNHWDNRPGGRMYGFNHEVARKYAARFPFLRGNMNSGLQLNVPERKLQPFSAECN 599 S++Y +NHWDNRPGG+M+GFN E A ++PF +G N Q+ V R+++ F+ N Sbjct 1076 SVYYADNHWDNRPGGKMFGFNPEAASILERKYPFTKGKWNINKQICVTTRRIEDFNPTTN 1135 Query 600 IVPSNRRLPHALVTSYQQCRGERVEWLLKKIPGHQMLLVSEYNLVIPHKRVFWIAPPRVS 659 I+P+NRRLPH+LV ++ +GER+EWL+ KI GH +LLVS +L +P KRV W+AP V Sbjct 1136 IIPANRRLPHSLVAEHRPVKGERMEWLVNKINGHHVLLVSGCSLALPTKRVTWVAPLGVR 1195 Query 660 GADRTYDLDLGLPMDAGRYDLVFVNIHTEYRQHHYQQCVDHSMRLQMLGGDSLHLLRPGG 719 GAD TY+L+LGLP GRYDLV +NIHT +R HHYQQCVDH+M+LQMLGGDSL LL+PGG Sbjct 1196 GADYTYNLELGLPATLGRYDLVVINIHTPFRIHHYQQCVDHAMKLQMLGGDSLRLLKPGG 1255 Query 720 SLLMRAYGYADRVSEMVVTALARKFSAFRVLRPACVTSNTEVFLLFSNFDNGRRAVTLHQ 779 SLL+RAYGYADR SE V+ L RKF + R L+P CVTSNTE+F LFSNFDNGRR T H Sbjct 1256 SLLIRAYGYADRTSERVICVLGRKFRSSRALKPPCVTSNTEMFFLFSNFDNGRRNFTTHV 1315 Query 780 ANQKLSSMYACNGLHTAGC 798 N +L++ + AGC Sbjct 1316 MNNQLNAAFVGQATR-AGC 1333 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Barmah Forest virus] Sequence ID: P87515.3 Length: 2411 Range 1: 534 to 1322 Score:1082 bits(2798), Expect:0.0, Method:Compositional matrix adjust., Identities:516/789(65%), Positives:621/789(78%), Gaps:1/789(0%) Query 1 GVVETPRNALKVTPQAHDHLIGSYLILSPQTVLKSEKLAPIHPLAEQVTVMTHSGRSGRY 60 GVVETPRN++KV+ Q D LIGSYLILSPQ VL+SEKLA IH LAEQV ++THSGRSGRY Sbjct 534 GVVETPRNSIKVSTQIGDALIGSYLILSPQAVLRSEKLACIHDLAEQVKLVTHSGRSGRY 593 Query 61 PVDKYDGRVLIPTGAAIPVSEFQALSESATMVYNEREFINRKLHHIALYGPALNTDEESY 120 VDKY GRVL+PTG AI + FQALSESAT+VYNEREF+NRKL HIA+YG ALNTDEE Y Sbjct 594 AVDKYXGRVLVPTGVAIDIQSFQALSESATLVYNEREFVNRKLWHIAVYGAALNTDEEGY 653 Query 121 EKVRAERAETEYVFDVDKKACIKKEEASGLVLTGDLINPPFHEFAYEGLKIRPAAPYHTT 180 EKV ERAE++YVFDVD+K C+KKE+ASG VL G+L+NPPFHEFAYEGL+ RP+APY Sbjct 654 EKVPVERAESDYVFDVDQKMCLKKEQASGWVLCGELVNPPFHEFAYEGLRTRPSAPYKVH 713 Query 181 IIGVFGVPGSGKSAIIKNMVTTRDLVASGKKENCQEIMNDVKRQRGLDVTARTVDSILLN 240 +GV+GVPGSGKSAIIKN VT DLV SGKKENC EIMNDV + R L +TA+TVDS+LLN Sbjct 714 TVGVYGVPGSGKSAIIKNTVTMSDLVLSGKKENCLEIMNDVLKHRALRITAKTVDSVLLN 773 Query 241 GCKKGVENLYVDEAFACHSGTLLALIALVRPSGKVVLCGDPKQCGFFNLMQLKVHYNHNI 300 G K LY+DEAF+CH+GTLLA IA+VRP KVVLCGDPKQCGFFN+MQLKV+YNH+I Sbjct 774 GVKHTPNILYIDEAFSCHAGTLLATIAIVRPKQKVVLCGDPKQCGFFNMMQLKVNYNHDI 833 Query 301 CTRVLHKSISRRCTLPVTAIVSTLHYQGKMRTTNRCNTPIQIDTTGSSKPASGDIVLTCF 360 C+ V HKSISRRCT +TAIVS LHYQ +MRTTN I IDTTG++KPA D++LTCF Sbjct 834 CSEVFHKSISRRCTQDITAIVSKLHYQDRMRTTNPRKGDIIIDTTGTTKPAKTDLILTCF 893 Query 361 RGWVKQLQIDYRGHEVMTAAASQGLTRKGVYAVRQKVNENPLYSPLSEHVNVLLTRTENR 420 RGWVKQLQ DYRG+EVMTAAASQGLTR VYAVR KVNENPLY+ SEHVNVLLTRTEN+ Sbjct 894 RGWVKQLQQDYRGNEVMTAAASQGLTRASVYAVRTKVNENPLYAQTSEHVNVLLTRTENK 953 Query 421 LVWKTLSGDPWIKVLTNVPRGDFSATLEEWHEEHDGIMRVLNERPAEVDPFQNKAKVCWA 480 LVWKTLS DPWIK LTN PRG ++AT+ EW EH GIM+ + V+ F NK VCWA Sbjct 954 LVWKTLSTDPWIKTLTNPPRGHYTATIAEWEAEHQGIMKAIQGYAPPVNTFMNKVNVCWA 1013 Query 481 KCLVQVLETAGIRMTADEWNTIL-AFREDRAYSPEVALNEICTRYYGVDLDSGLFSAQSV 539 K L VLETAGI ++A++W+ +L F +D AYSPEVALN ICT+ YG DLD+GLFS SV Sbjct 1014 KTLTPVLETAGISLSAEDWSELLPPFAQDVAYSPEVALNIICTKMYGFDLDTGLFSRPSV 1073 Query 540 SLFYENNHWDNRPGGRMYGFNHEVARKYAARFPFLRGNMNSGLQLNVPERKLQPFSAECN 599 + Y +HWDNR GG+MYGF+ + + A R P+LRG SG+Q+ V E ++Q ++ N Sbjct 1074 PMTYTKDHWDNRVGGKMYGFSQQAYDQLARRHPYLRGREKSGMQIVVTEMRIQRPRSDAN 1133 Query 600 IVPSNRRLPHALVTSYQQCRGERVEWLLKKIPGHQMLLVSEYNLVIPHKRVFWIAPPRVS 659 I+P NRRLPH+LV +++ R R E G+ MLLVSEYN+ +P+K++ W+AP Sbjct 1134 IIPINRRLPHSLVATHEYRRAARAEEFFTTTRGYTMLLVSEYNMNLPNKKITWLAPIGTQ 1193 Query 660 GADRTYDLDLGLPMDAGRYDLVFVNIHTEYRQHHYQQCVDHSMRLQMLGGDSLHLLRPGG 719 GA T +L+LG+P G +D V VN+ T +R HHYQQC DH+M+LQML GD+L ++PGG Sbjct 1194 GAHHTANLNLGIPPLLGSFDAVVVNMPTPFRNHHYQQCEDHAMKLQMLAGDALRHIKPGG 1253 Query 720 SLLMRAYGYADRVSEMVVTALARKFSAFRVLRPACVTSNTEVFLLFSNFDNGRRAVTLHQ 779 SL ++AYGYADR SE VV ALARKF +FRV +P+CVTSNTEVFL FS FDNG+RA+ LH Sbjct 1254 SLWVKAYGYADRHSEHVVLALARKFKSFRVTQPSCVTSNTEVFLHFSIFDNGKRAIALHS 1313 Query 780 ANQKLSSMY 788 AN+K +S++ Sbjct 1314 ANRKANSIF 1322 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Ockelbo virus] Sequence ID: P27283.2 Length: 2515 Range 1: 541 to 1338 Score:1006 bits(2601), Expect:0.0, Method:Compositional matrix adjust., Identities:483/800(60%), Positives:600/800(75%), Gaps:14/800(1%) Query 1 GVVETPRNALKVTPQAHDHLIGSYLILSPQTVLKSEKLAPIHPLAEQVTVMTHSGRSGRY 60 +VETPR +++ PQA+D +IG Y+++SP +VLK+ KLAP HPLA+QV ++THSGR+GRY Sbjct 541 ALVETPRGHVRIIPQANDRMIGQYIVVSPTSVLKNAKLAPAHPLADQVKIITHSGRAGRY 600 Query 61 PVDKYDGRVLIPTGAAIPVSEFQALSESATMVYNEREFINRKLHHIALYGPALNTDEESY 120 V+ YD +VL+P G+A+P EF ALSESAT+VYNEREF+NRKL+HIA++GPA NT+EE Y Sbjct 601 AVEPYDAKVLMPAGSAVPWPEFLALSESATLVYNEREFVNRKLYHIAMHGPAKNTEEEQY 660 Query 121 EKVRAERAETEYVFDVDKKACIKKEEASGLVLTGDLINPPFHEFAYEGLKIRPAAPYHTT 180 + +AE AETEYVFDVDKK C+KKEEASGLVL+G+L NPP+HE A EGLK RPA PY Sbjct 661 KVTKAELAETEYVFDVDKKRCVKKEEASGLVLSGELTNPPYHELALEGLKTRPAVPYKVE 720 Query 181 IIGVFGVPGSGKSAIIKNMVTTRDLVASGKKENCQEIMNDVKRQRGLDVTARTVDSILLN 240 IGV G PGSGKSAIIK+ VT RDLV SGKKENC+EI DV R RG+ +T++TVDS++LN Sbjct 721 TIGVIGTPGSGKSAIIKSTVTARDLVTSGKKENCREIEADVLRLRGMQITSKTVDSVMLN 780 Query 241 GCKKGVENLYVDEAFACHSGTLLALIALVRPSGKVVLCGDPKQCGFFNLMQLKVHYNH-- 298 GC K VE LYVDEAFACH+G LLALIA+VRP KVVLCGDPKQCGFFN+MQLKVH+NH Sbjct 781 GCHKAVEVLYVDEAFACHAGALLALIAIVRPRKKVVLCGDPKQCGFFNMMQLKVHFNHPE 840 Query 299 -NICTRVLHKSISRRCTLPVTAIVSTLHYQGKMRTTNRCNTPIQIDTTGSSKPASGDIVL 357 +ICT+ +K ISRRCT PVTAIVSTLHY GKM+TTN C I+ID TG++KP GDI+L Sbjct 841 RDICTKTFYKFISRRCTQPVTAIVSTLHYDGKMKTTNPCKKNIEIDITGATKPKPGDIIL 900 Query 358 TCFRGWVKQLQIDYRGHEVMTAAASQGLTRKGVYAVRQKVNENPLYSPLSEHVNVLLTRT 417 TCFRGWVKQLQIDY GHEVMTAAASQGLTRKGVYAVRQKVNEN LY+ SEHVNVLLTRT Sbjct 901 TCFRGWVKQLQIDYPGHEVMTAAASQGLTRKGVYAVRQKVNENALYAITSEHVNVLLTRT 960 Query 418 ENRLVWKTLSGDPWIKVLTNVPRGDFSATLEEWHEEHDGIMRVLNERPAEVDPFQNKAKV 477 E+RLVWKTL GDPWIK LTNVP+G+F AT+E+W EH GI+ +N +PF K V Sbjct 961 EDRLVWKTLQGDPWIKQLTNVPKGNFQATIEDWEAEHKGIIAAINSPAPRTNPFSCKTNV 1020 Query 478 CWAKCLVQVLETAGIRMTADEWNTILA-FREDRAYSPEVALNEICTRYYGVDLDSGLFSA 536 CWAK L +L TAGI +T +W+ + F +D+ +S AL+ IC +++G+DL SGLFS Sbjct 1021 CWAKALEPILATAGIVLTGCQWSELFPQFADDKPHSAIYALDVICIKFFGMDLTSGLFSK 1080 Query 537 QSVSLFYEN-------NHWDNRPGGRMYGFNHEVARKYAARFPFLRGNMNSGLQLNVPER 589 QS+ L Y HWDN PG R YG++H VA + + RFP + G QL++ Sbjct 1081 QSIPLTYHPADSARPVAHWDNSPGTRKYGYDHAVAAELSRRFPVFQL-AGKGTQLDLQTG 1139 Query 590 KLQPFSAECNIVPSNRRLPHALVTSYQQCRGERVEWLLKKIPGHQMLLVSEYNLVIPHKR 649 + + SA+ N+VP NR LPHALV +++ + VE L + H +L+VSE + PHKR Sbjct 1140 RTRVISAQHNLVPVNRNLPHALVPEHKEKQPGPVEKFLNQFKHHSVLVVSEEKIEAPHKR 1199 Query 650 VFWIAPPRVSGADRTYDLDLGLPMDAGRYDLVFVNIHTEYRQHHYQQCVDHSMRLQMLGG 709 + WIAP ++GAD+ Y+L G P A RYDLVF+NI T+YR HH+QQC DH+ L+ L Sbjct 1200 IEWIAPIGIAGADKNYNLAFGFPPQA-RYDLVFINIGTKYRNHHFQQCEDHAATLKTLSR 1258 Query 710 DSLHLLRPGGSLLMRAYGYADRVSEMVVTALARKFSAFRVLRPACVTSNTEVFLLFSNFD 769 +L+ L PGG+L++++YGYADR SE VVTALARKF RP CV+SNTE++L+F D Sbjct 1259 SALNCLNPGGTLVVKSYGYADRNSEDVVTALARKFVRVSAARPECVSSNTEMYLIFRQLD 1318 Query 770 NGR-RAVTLHQANQKLSSMY 788 N R R T H N +SS+Y Sbjct 1319 NSRTRQFTPHHLNCVISSVY 1338 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; AltName: Full=p270 nonstructural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Sindbis virus] Sequence ID: P03317.2 Length: 2513 Range 1: 541 to 1338 Score:1001 bits(2589), Expect:0.0, Method:Compositional matrix adjust., Identities:480/800(60%), Positives:597/800(74%), Gaps:14/800(1%) Query 1 GVVETPRNALKVTPQAHDHLIGSYLILSPQTVLKSEKLAPIHPLAEQVTVMTHSGRSGRY 60 +VETPR +++ PQA+D +IG Y+++SP +VLK+ KLAP HPLA+QV ++THSGRSGRY Sbjct 541 ALVETPRGHVRIIPQANDRMIGQYIVVSPNSVLKNAKLAPAHPLADQVKIITHSGRSGRY 600 Query 61 PVDKYDGRVLIPTGAAIPVSEFQALSESATMVYNEREFINRKLHHIALYGPALNTDEESY 120 V+ YD +VL+P G A+P EF ALSESAT+VYNEREF+NRKL+HIA++GPA NT+EE Y Sbjct 601 AVEPYDAKVLMPAGGAVPWPEFLALSESATLVYNEREFVNRKLYHIAMHGPAKNTEEEQY 660 Query 121 EKVRAERAETEYVFDVDKKACIKKEEASGLVLTGDLINPPFHEFAYEGLKIRPAAPYHTT 180 + +AE AETEYVFDVDKK C+KKEEASGLVL+G+L NPP+HE A EGLK RPA PY Sbjct 661 KVTKAELAETEYVFDVDKKRCVKKEEASGLVLSGELTNPPYHELALEGLKTRPAVPYKVE 720 Query 181 IIGVFGVPGSGKSAIIKNMVTTRDLVASGKKENCQEIMNDVKRQRGLDVTARTVDSILLN 240 IGV G PGSGKSAIIK+ VT RDLV SGKKENC+EI DV R RG+ +T++TVDS++LN Sbjct 721 TIGVIGTPGSGKSAIIKSTVTARDLVTSGKKENCREIEADVLRLRGMQITSKTVDSVMLN 780 Query 241 GCKKGVENLYVDEAFACHSGTLLALIALVRPSGKVVLCGDPKQCGFFNLMQLKVHYNH-- 298 GC K VE LYVDEAFACH+G LLALIA+VRP KVVLCGDP QCGFFN+MQLKVH+NH Sbjct 781 GCHKAVEVLYVDEAFACHAGALLALIAIVRPRKKVVLCGDPMQCGFFNMMQLKVHFNHPE 840 Query 299 -NICTRVLHKSISRRCTLPVTAIVSTLHYQGKMRTTNRCNTPIQIDTTGSSKPASGDIVL 357 +ICT+ +K ISRRCT PVTAIVSTLHY GKM+TTN C I+ID TG++KP GDI+L Sbjct 841 KDICTKTFYKYISRRCTQPVTAIVSTLHYDGKMKTTNPCKKNIEIDITGATKPKPGDIIL 900 Query 358 TCFRGWVKQLQIDYRGHEVMTAAASQGLTRKGVYAVRQKVNENPLYSPLSEHVNVLLTRT 417 TCFRGWVKQLQIDY GHEVMTAAASQGLTRKGVYAVRQKVNENPLY+ SEHVNVLLTRT Sbjct 901 TCFRGWVKQLQIDYPGHEVMTAAASQGLTRKGVYAVRQKVNENPLYAITSEHVNVLLTRT 960 Query 418 ENRLVWKTLSGDPWIKVLTNVPRGDFSATLEEWHEEHDGIMRVLNERPAEVDPFQNKAKV 477 E+RLVWKTL GDPWIK TN+P+G+F AT+E+W EH GI+ +N +PF K V Sbjct 961 EDRLVWKTLQGDPWIKQPTNIPKGNFQATIEDWEAEHKGIIAAINSPTPRANPFSCKTNV 1020 Query 478 CWAKCLVQVLETAGIRMTADEWNTILA-FREDRAYSPEVALNEICTRYYGVDLDSGLFSA 536 CWAK L +L TAGI +T +W+ + F +D+ +S AL+ IC +++G+DL SGLFS Sbjct 1021 CWAKALEPILATAGIVLTGCQWSELFPQFADDKPHSAIYALDVICIKFFGMDLTSGLFSK 1080 Query 537 QSVSLFYEN-------NHWDNRPGGRMYGFNHEVARKYAARFPFLRGNMNSGLQLNVPER 589 QS+ L Y HWDN PG R YG++H +A + + RFP + G QL++ Sbjct 1081 QSIPLTYHPADSARPVAHWDNSPGTRKYGYDHAIAAELSRRFPVFQL-AGKGTQLDLQTG 1139 Query 590 KLQPFSAECNIVPSNRRLPHALVTSYQQCRGERVEWLLKKIPGHQMLLVSEYNLVIPHKR 649 + + SA+ N+VP NR LPHALV Y++ + V+ L + H +L+VSE + P KR Sbjct 1140 RTRVISAQHNLVPVNRNLPHALVPEYKEKQPGPVKKFLNQFKHHSVLVVSEEKIEAPRKR 1199 Query 650 VFWIAPPRVSGADRTYDLDLGLPMDAGRYDLVFVNIHTEYRQHHYQQCVDHSMRLQMLGG 709 + WIAP ++GAD+ Y+L G P A RYDLVF+NI T+YR HH+QQC DH+ L+ L Sbjct 1200 IEWIAPIGIAGADKNYNLAFGFPPQA-RYDLVFINIGTKYRNHHFQQCEDHAATLKTLSR 1258 Query 710 DSLHLLRPGGSLLMRAYGYADRVSEMVVTALARKFSAFRVLRPACVTSNTEVFLLFSNFD 769 +L+ L PGG+L++++YGYADR SE VVTALARKF RP CV+SNTE++L+F D Sbjct 1259 SALNCLNPGGTLVVKSYGYADRNSEDVVTALARKFVRVSAARPDCVSSNTEMYLIFRQLD 1318 Query 770 NGR-RAVTLHQANQKLSSMY 788 N R R T H N +SS+Y Sbjct 1319 NSRTRQFTPHHLNCVISSVY 1338 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Venezuelan equine encephalitis virus (strain CPA201)] Sequence ID: Q8V294.3 Length: 2497 Range 1: 536 to 1329 Score:981 bits(2535), Expect:0.0, Method:Compositional matrix adjust., Identities:471/800(59%), Positives:587/800(73%), Gaps:8/800(1%) Query 1 GVVETPRNALKVTPQAHDHLIGSYLILSPQTVLKSEKLAPIHPLAEQVTVMTHSGRSGRY 60 G VETPR +KVT A + IGSY +LSPQ VL+SEKL IHPLAEQV V+THSGR GRY Sbjct 536 GSVETPRGLIKVTSYAGEDKIGSYAVLSPQAVLRSEKLTCIHPLAEQVIVITHSGRKGRY 595 Query 61 PVDKYDGRVLIPTGAAIPVSEFQALSESATMVYNEREFINRKLHHIALYGPALNTDEESY 120 V+ Y G+V++P G AIPV +FQALSESAT+VYNEREF+NR LHHIA +G ALNTDEE Y Sbjct 596 AVEPYHGKVVVPEGQAIPVQDFQALSESATIVYNEREFVNRYLHHIATHGGALNTDEEYY 655 Query 121 EKVRAERAETEYVFDVDKKACIKKEEASGLVLTGDLINPPFHEFAYEGLKIRPAAPYHTT 180 V+ E EY++D+DKK C+KKE SGL LTG+L++PPFHEFAYE L+ RPAAPY Sbjct 656 RVVKPSEHEGEYLYDIDKKQCVKKELVSGLGLTGELVDPPFHEFAYESLRTRPAAPYQVP 715 Query 181 IIGVFGVPGSGKSAIIKNMVTTRDLVASGKKENCQEIMNDVKRQRGLDVTARTVDSILLN 240 IGV+GVPGSGKS IIK+ VT +DLV S KKENC EI+ DVK+ +GLDV ARTVDS+LLN Sbjct 716 TIGVYGVPGSGKSGIIKSAVTKKDLVVSAKKENCAEIIRDVKKMKGLDVNARTVDSVLLN 775 Query 241 GCKKGVENLYVDEAFACHSGTLLALIALVRPSGKVVLCGDPKQCGFFNLMQLKVHYNHNI 300 GCK VE LY+DEAFACH+GTL ALIA++RP K VLCGDPKQCGFFN+M LKVH+NH I Sbjct 776 GCKHPVETLYIDEAFACHAGTLRALIAIIRPK-KAVLCGDPKQCGFFNMMCLKVHFNHEI 834 Query 301 CTRVLHKSISRRCTLPVTAIVSTLHYQGKMRTTNRCNTPIQIDTTGSSKPASGDIVLTCF 360 CT+V HKSISRRCT VT++VSTL Y +MRTTN ++ I+IDTTGS+KP D++LTCF Sbjct 835 CTQVFHKSISRRCTKSVTSVVSTLFYDKRMRTTNPRDSKIEIDTTGSTKPKKDDLILTCF 894 Query 361 RGWVKQLQIDYRGHEVMTAAASQGLTRKGVYAVRQKVNENPLYSPLSEHVNVLLTRTENR 420 RGWVKQLQIDY+G+E+MTAAASQGLTRKGVYAVR KVNENPLY+P SEHVNVLLTRTE++ Sbjct 895 RGWVKQLQIDYKGNEIMTAAASQGLTRKGVYAVRYKVNENPLYAPTSEHVNVLLTRTEDK 954 Query 421 LVWKTLSGDPWIKVLTNVPRGDFSATLEEWHEEHDGIMRVLNERPAEVDPFQNKAKVCWA 480 +VWKTL+GDPWIK LT GDF+AT+EEW EHD IMR + E+P D FQNKA VCWA Sbjct 955 IVWKTLAGDPWIKTLTAKYPGDFTATMEEWQAEHDAIMRHILEKPDPTDVFQNKANVCWA 1014 Query 481 KCLVQVLETAGIRMTADEWNTILAFREDRAYSPEVALNEICTRYYGVDLDSGLFSAQSVS 540 K LV VL+TAGI +T ++WNT+ F+ED+A+S E+ LN++C R++G+DLDSGLFSA +V Sbjct 1015 KALVPVLKTAGIDLTTEQWNTVDYFKEDKAHSAEIVLNQLCVRFFGLDLDSGLFSAPTVP 1074 Query 541 LFYENNHWDNRPGGRMYGFNHEVARKYAARFPFLRGNMNSGLQLNVPERKLQPFSAECNI 600 L NNHWDN P MYG N EV R+ + R+P L + +G ++ L+ + N+ Sbjct 1075 LSIRNNHWDNSPSPNMYGLNKEVVRQLSRRYPQLPRAVTTGRAYDMNTGTLRNYDPRINL 1134 Query 601 VPSNRRLPHALVTSYQQCRGERVEWLLKKIPGHQMLLVSEYNLVIPHKRVFWIAPPRVSG 660 VP NRRLPHALVT + + K+ G +L+V E + I K V W++ Sbjct 1135 VPVNRRLPHALVTQHADYPPSDFSAFVSKLKGRTVLVVGE-KMSISGKTVDWLS----ET 1189 Query 661 ADRTY--DLDLGLPMDAGRYDLVFVNIHTEYRQHHYQQCVDHSMRLQMLGGDSLHLLRPG 718 D T+ LDLG+P + +YD+VFVN+ T+YR HHYQQC DH+++L ML + L PG Sbjct 1190 PDSTFRARLDLGIPSELPKYDIVFVNVRTQYRYHHYQQCEDHAIKLSMLTKKACLHLNPG 1249 Query 719 GSLLMRAYGYADRVSEMVVTALARKFSAFRVLRPACVTSNTEVFLLFSNFDNGRRAVTLH 778 G+ + YGYADR SE ++ A+AR+F RV +P TEV +F FD R + Sbjct 1250 GTCVSIGYGYADRASESIIGAVARQFKFSRVCKPKVSKEETEVLFVFIGFDRKTRTHNPY 1309 Query 779 QANQKLSSMYACNGLHTAGC 798 + + L+++Y + LH AGC Sbjct 1310 KLSSTLTNIYTGSRLHEAGC 1329 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Venezuelan equine encephalitis virus (strain Mena II)] Sequence ID: Q9WJC7.3 Length: 2499 Range 1: 536 to 1329 Score:980 bits(2534), Expect:0.0, Method:Compositional matrix adjust., Identities:471/800(59%), Positives:586/800(73%), Gaps:8/800(1%) Query 1 GVVETPRNALKVTPQAHDHLIGSYLILSPQTVLKSEKLAPIHPLAEQVTVMTHSGRSGRY 60 G VETPR +KVT + IGSY +LSPQ VL+SEKL IHPLAEQV V+THSGR GRY Sbjct 536 GSVETPRGLIKVTSYGGEDKIGSYAVLSPQAVLRSEKLTCIHPLAEQVIVITHSGRKGRY 595 Query 61 PVDKYDGRVLIPTGAAIPVSEFQALSESATMVYNEREFINRKLHHIALYGPALNTDEESY 120 V+ Y G+V++P G AIPV +FQALSESAT+VYNEREF+NR LHHIA +G ALNTDEE Y Sbjct 596 AVEPYHGKVVVPEGQAIPVQDFQALSESATIVYNEREFVNRYLHHIATHGGALNTDEEYY 655 Query 121 EKVRAERAETEYVFDVDKKACIKKEEASGLVLTGDLINPPFHEFAYEGLKIRPAAPYHTT 180 V+ E EY++D+DKK C+KKE SGL LTG+L++PPFHEFAYE L+ RPAAPY Sbjct 656 RVVKPSEHEGEYLYDIDKKQCVKKELVSGLGLTGELVDPPFHEFAYESLRTRPAAPYQVP 715 Query 181 IIGVFGVPGSGKSAIIKNMVTTRDLVASGKKENCQEIMNDVKRQRGLDVTARTVDSILLN 240 IGV+GVPGSGKS IIK+ VT +DLV S KKENC EI+ DVK+ +GLDV ARTVDS+LLN Sbjct 716 TIGVYGVPGSGKSGIIKSAVTKKDLVVSAKKENCAEIIRDVKKMKGLDVNARTVDSVLLN 775 Query 241 GCKKGVENLYVDEAFACHSGTLLALIALVRPSGKVVLCGDPKQCGFFNLMQLKVHYNHNI 300 GCK VE LY+DEAFACH+GTL ALIA++RP K VLCGDPKQCGFFN+M LKVH+NH I Sbjct 776 GCKHPVETLYIDEAFACHAGTLRALIAIIRPK-KAVLCGDPKQCGFFNMMCLKVHFNHEI 834 Query 301 CTRVLHKSISRRCTLPVTAIVSTLHYQGKMRTTNRCNTPIQIDTTGSSKPASGDIVLTCF 360 CT+V HKSISRRCT VT++VSTL Y +MRTTN ++ I+IDTTGS+K D++LTCF Sbjct 835 CTQVFHKSISRRCTKSVTSVVSTLFYDKRMRTTNPRDSKIEIDTTGSTKSKKEDLILTCF 894 Query 361 RGWVKQLQIDYRGHEVMTAAASQGLTRKGVYAVRQKVNENPLYSPLSEHVNVLLTRTENR 420 RGWVKQLQIDY+G+E+MTAAASQGLTRK VYAVR KVNENPLY+P SEHVNVLLTRTE++ Sbjct 895 RGWVKQLQIDYKGNEIMTAAASQGLTRKSVYAVRYKVNENPLYAPTSEHVNVLLTRTEDK 954 Query 421 LVWKTLSGDPWIKVLTNVPRGDFSATLEEWHEEHDGIMRVLNERPAEVDPFQNKAKVCWA 480 +VWKTL+GDPWIK LT GDF+AT+EEW EHD IMR + E+P D FQNKA VCWA Sbjct 955 IVWKTLAGDPWIKTLTAKYPGDFTATMEEWQAEHDAIMRHILEKPDPTDVFQNKANVCWA 1014 Query 481 KCLVQVLETAGIRMTADEWNTILAFREDRAYSPEVALNEICTRYYGVDLDSGLFSAQSVS 540 K LV VL+TAGI +T ++WNT+ F+ED+A+S E+ LN++C RY+G+DLDSGLFSA +V Sbjct 1015 KALVPVLKTAGIDLTTEQWNTVDYFKEDKAHSAEIVLNQLCVRYFGLDLDSGLFSAPTVP 1074 Query 541 LFYENNHWDNRPGGRMYGFNHEVARKYAARFPFLRGNMNSGLQLNVPERKLQPFSAECNI 600 L NNHWDN P MYG NHEV R+ + R+P L + +G ++ L+ + N+ Sbjct 1075 LSIRNNHWDNSPSPNMYGLNHEVVRQLSRRYPQLPRAVTTGRVYDMNTGTLRNYDPRINL 1134 Query 601 VPSNRRLPHALVTSYQQCRGERVEWLLKKIPGHQMLLVSEYNLVIPHKRVFWIAPPRVSG 660 VP NRRLPHALVT + + K+ G +L+V E + I K V W++ Sbjct 1135 VPVNRRLPHALVTQHADHPPSDFSAFVSKLKGRTVLVVGE-KMNISGKAVDWLS----ET 1189 Query 661 ADRTY--DLDLGLPMDAGRYDLVFVNIHTEYRQHHYQQCVDHSMRLQMLGGDSLHLLRPG 718 D T+ LDLG+P + +YD+VFVN+ T+YR HHYQQC DH+++L ML + L PG Sbjct 1190 PDATFRARLDLGIPTELPKYDIVFVNVRTQYRYHHYQQCEDHAIKLSMLTKKACLHLNPG 1249 Query 719 GSLLMRAYGYADRVSEMVVTALARKFSAFRVLRPACVTSNTEVFLLFSNFDNGRRAVTLH 778 G+ + YGYADR SE ++ A+AR+F RV +P TEV +F FD R + Sbjct 1250 GTCVSIGYGYADRASESIIGAVARQFKFSRVCKPKVSKEETEVLFVFIGFDRKTRTHNPY 1309 Query 779 QANQKLSSMYACNGLHTAGC 798 + + L+++Y +GLH AGC Sbjct 1310 KLSSTLTNIYTGSGLHEAGC 1329 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Venezuelan equine encephalitis virus (strain 3880)] Sequence ID: P36327.3 Length: 2485 Range 1: 536 to 1329 Score:977 bits(2526), Expect:0.0, Method:Compositional matrix adjust., Identities:470/799(59%), Positives:586/799(73%), Gaps:6/799(0%) Query 1 GVVETPRNALKVTPQAHDHLIGSYLILSPQTVLKSEKLAPIHPLAEQVTVMTHSGRSGRY 60 G VETPR +KVT A + IGSY +LSPQ VLKSEKL+ IHPLAEQV V+THSGR GRY Sbjct 536 GSVETPRGLIKVTSYAGEDKIGSYAVLSPQAVLKSEKLSCIHPLAEQVIVITHSGRKGRY 595 Query 61 PVDKYDGRVLIPTGAAIPVSEFQALSESATMVYNEREFINRKLHHIALYGPALNTDEESY 120 V+ Y G+V++P G AIPV +FQALSESAT+VYNEREF+NR LHHIA +G ALNTDEE Y Sbjct 596 AVEPYHGKVVVPEGHAIPVQDFQALSESATIVYNEREFVNRYLHHIATHGGALNTDEEYY 655 Query 121 EKVRAERAETEYVFDVDKKACIKKEEASGLVLTGDLINPPFHEFAYEGLKIRPAAPYHTT 180 + V+ + EY++D+D+K C+KKE +GL LTG+L++PPFHEFAYE L+ RPAAPY Sbjct 656 KTVKPSEHDGEYLYDIDRKQCVKKELVTGLGLTGELVDPPFHEFAYESLRTRPAAPYQVP 715 Query 181 IIGVFGVPGSGKSAIIKNMVTTRDLVASGKKENCQEIMNDVKRQRGLDVTARTVDSILLN 240 IGV+GVPGSGKS IIK+ VT +DLV S KKENC EI+ DVKR +GLDV ARTVDS+LLN Sbjct 716 TIGVYGVPGSGKSGIIKSAVTKKDLVVSAKKENCAEIIRDVKRIKGLDVNARTVDSVLLN 775 Query 241 GCKKGVENLYVDEAFACHSGTLLALIALVRPSGKVVLCGDPKQCGFFNLMQLKVHYNHNI 300 GCK VE LY+DEAFACH+GTL ALIA++RP K VLCGDPKQCGFFN+M LKVH+NH I Sbjct 776 GCKYPVETLYIDEAFACHAGTLRALIAIIRPK-KAVLCGDPKQCGFFNMMCLKVHFNHEI 834 Query 301 CTRVLHKSISRRCTLPVTAIVSTLHYQGKMRTTNRCNTPIQIDTTGSSKPASGDIVLTCF 360 CT+V HKSISRRCT VT++VSTL Y +MRTTN T I+IDTTGS+KP D++LTCF Sbjct 835 CTQVFHKSISRRCTKSVTSVVSTLFYDKRMRTTNPKETKIEIDTTGSTKPKQDDLILTCF 894 Query 361 RGWVKQLQIDYRGHEVMTAAASQGLTRKGVYAVRQKVNENPLYSPLSEHVNVLLTRTENR 420 RGWVKQLQIDY+G+EVMTAAASQGLTRKGVYAVR KVNENPLY+P SEHVNVLLTRTE+R Sbjct 895 RGWVKQLQIDYKGNEVMTAAASQGLTRKGVYAVRYKVNENPLYAPTSEHVNVLLTRTEDR 954 Query 421 LVWKTLSGDPWIKVLTNVPRGDFSATLEEWHEEHDGIMRVLNERPAEVDPFQNKAKVCWA 480 +VWKTL+GDPWIK LT G+F+AT+EEW EHD IMR + ERP D FQNKA VCWA Sbjct 955 IVWKTLAGDPWIKTLTAKYPGNFTATIEEWQAEHDAIMRHILERPDPTDVFQNKANVCWA 1014 Query 481 KCLVQVLETAGIRMTADEWNTILAFREDRAYSPEVALNEICTRYYGVDLDSGLFSAQSVS 540 K LV VL+TAGI MT ++WNT+ F D+A+S E+ LN++C R++G+DLDSGLFSA +V Sbjct 1015 KALVPVLKTAGIDMTTEQWNTVDYFETDKAHSAEIVLNQLCVRFFGLDLDSGLFSAPTVP 1074 Query 541 LFYENNHWDNRPGGRMYGFNHEVARKYAARFPFLRGNMNSGLQLNVPERKLQPFSAECNI 600 L NNHWDN P MYG N EV R+ + R+P L + +G ++ L+ + N+ Sbjct 1075 LSIRNNHWDNSPSPNMYGLNKEVVRQLSRRYPQLPRAVTTGRVYDMNTGTLRNYDPRINL 1134 Query 601 VPSNRRLPHALVTSYQQCRGERVEWLLKKIPGHQMLLVSEYNLVIPHKRVFWIAP-PRVS 659 VP NRRLPHALV + + + K+ G +L+V E L +P K V W++ P + Sbjct 1135 VPVNRRLPHALVLHHNEHPQSDFSSFVSKLKGRTVLVVGE-KLSVPGKTVDWLSDRPEAT 1193 Query 660 GADRTYDLDLGLPMDAGRYDLVFVNIHTEYRQHHYQQCVDHSMRLQMLGGDSLHLLRPGG 719 R LDLG+P D +YD++F+N+ T Y+ HHYQQC DH+++L ML + L PGG Sbjct 1194 FRAR---LDLGIPGDVPKYDIIFINVRTPYKYHHYQQCEDHAIKLSMLTKKACLHLNPGG 1250 Query 720 SLLMRAYGYADRVSEMVVTALARKFSAFRVLRPACVTSNTEVFLLFSNFDNGRRAVTLHQ 779 + + YGYADR SE ++ A+AR+F RV +P TEV +F +D R ++ Sbjct 1251 TCVSIGYGYADRASESIIGAIARQFKFSRVCKPKSSLEETEVLFVFIGYDRKARTHNPYK 1310 Query 780 ANQKLSSMYACNGLHTAGC 798 + L+++Y + LH AGC Sbjct 1311 LSSTLTNIYTGSRLHEAGC 1329 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Venezuelan equine encephalitis virus (strain P676)] Sequence ID: P36328.2 Length: 2493 Range 1: 536 to 1329 Score:977 bits(2525), Expect:0.0, Method:Compositional matrix adjust., Identities:469/799(59%), Positives:587/799(73%), Gaps:6/799(0%) Query 1 GVVETPRNALKVTPQAHDHLIGSYLILSPQTVLKSEKLAPIHPLAEQVTVMTHSGRSGRY 60 G VETPR +KVT A + IGSY +LSPQ VLKSEKL+ IHPLAEQV V+THSGR GRY Sbjct 536 GSVETPRGLIKVTSYAGEDKIGSYAVLSPQAVLKSEKLSCIHPLAEQVIVITHSGRKGRY 595 Query 61 PVDKYDGRVLIPTGAAIPVSEFQALSESATMVYNEREFINRKLHHIALYGPALNTDEESY 120 V+ Y G+V++P G AIPV +FQALSESAT+VYNEREF+NR LHHIA +G ALNTDEE Y Sbjct 596 AVEPYHGKVVVPEGHAIPVQDFQALSESATIVYNEREFVNRYLHHIATHGGALNTDEEYY 655 Query 121 EKVRAERAETEYVFDVDKKACIKKEEASGLVLTGDLINPPFHEFAYEGLKIRPAAPYHTT 180 + V+ + EY++D+D+K C+KKE +GL LTG+L++PPFHEFAYE L+ RPAAPY Sbjct 656 KTVKPSEHDGEYLYDIDRKQCVKKELVTGLGLTGELVDPPFHEFAYESLRTRPAAPYQVP 715 Query 181 IIGVFGVPGSGKSAIIKNMVTTRDLVASGKKENCQEIMNDVKRQRGLDVTARTVDSILLN 240 IGV+GVPGSGKS IIK+ VT +DLV S KKENC EI+ DVK+ +GLDV ARTVDS+LLN Sbjct 716 TIGVYGVPGSGKSGIIKSAVTKKDLVVSAKKENCAEIIRDVKKMKGLDVNARTVDSVLLN 775 Query 241 GCKKGVENLYVDEAFACHSGTLLALIALVRPSGKVVLCGDPKQCGFFNLMQLKVHYNHNI 300 GCK VE LY+DEAFACH+GTL ALIA++RP K VLCGDPKQCGFFN+M LKVH+NH I Sbjct 776 GCKHPVETLYIDEAFACHAGTLRALIAIIRPK-KAVLCGDPKQCGFFNMMCLKVHFNHEI 834 Query 301 CTRVLHKSISRRCTLPVTAIVSTLHYQGKMRTTNRCNTPIQIDTTGSSKPASGDIVLTCF 360 CT+V HKSISRRCT VT++VSTL Y +MRTTN T I IDTTGS+KP D++LTCF Sbjct 835 CTQVFHKSISRRCTKSVTSVVSTLFYDKRMRTTNPKETKIVIDTTGSTKPKQDDLILTCF 894 Query 361 RGWVKQLQIDYRGHEVMTAAASQGLTRKGVYAVRQKVNENPLYSPLSEHVNVLLTRTENR 420 RGWVKQLQIDY+G+E+MTAAASQGLTRKGVYAVR KVNENPLY+P SEHVNVLLTRTE+R Sbjct 895 RGWVKQLQIDYKGNEIMTAAASQGLTRKGVYAVRYKVNENPLYAPTSEHVNVLLTRTEDR 954 Query 421 LVWKTLSGDPWIKVLTNVPRGDFSATLEEWHEEHDGIMRVLNERPAEVDPFQNKAKVCWA 480 +VWKTL+GDPWIK+LT G+F+AT+EEW EHD IMR + ERP D FQNKA VCWA Sbjct 955 IVWKTLAGDPWIKILTAKYPGNFTATIEEWQAEHDAIMRHILERPDPTDVFQNKANVCWA 1014 Query 481 KCLVQVLETAGIRMTADEWNTILAFREDRAYSPEVALNEICTRYYGVDLDSGLFSAQSVS 540 K LV VL+TAGI MT ++WNT+ F D+A+S E+ LN++C R++G+DLDSGLFSA +V Sbjct 1015 KALVPVLKTAGIDMTTEQWNTVDYFETDKAHSAEIVLNQLCVRFFGLDLDSGLFSAPTVP 1074 Query 541 LFYENNHWDNRPGGRMYGFNHEVARKYAARFPFLRGNMNSGLQLNVPERKLQPFSAECNI 600 L NNHWDN P MYG N EV R+ + R+P L + +G ++ L+ + N+ Sbjct 1075 LSIRNNHWDNSPSPNMYGLNKEVVRQLSRRYPQLPRAVATGRVYDMNTGTLRNYDPRINL 1134 Query 601 VPSNRRLPHALVTSYQQCRGERVEWLLKKIPGHQMLLVSEYNLVIPHKRVFWIAP-PRVS 659 VP NRRLPHALV + + + K+ G +L+V E L +P K+V W++ P + Sbjct 1135 VPVNRRLPHALVLHHNEHPQSDFSSFVSKLKGRTVLVVGE-KLSVPGKKVDWLSDQPEAT 1193 Query 660 GADRTYDLDLGLPMDAGRYDLVFVNIHTEYRQHHYQQCVDHSMRLQMLGGDSLHLLRPGG 719 R LDLG+P D +YD+VF+N+ T Y+ HHYQQC DH+++L ML + L PGG Sbjct 1194 FRAR---LDLGIPGDVPKYDIVFINVRTPYKYHHYQQCEDHAIKLSMLTKKACLHLNPGG 1250 Query 720 SLLMRAYGYADRVSEMVVTALARKFSAFRVLRPACVTSNTEVFLLFSNFDNGRRAVTLHQ 779 + + YGYADR SE ++ A+AR+F RV +P TEV +F +D R ++ Sbjct 1251 TCVSIGYGYADRASESIIGAIARQFKFSRVCKPKSSHEETEVLFVFIGYDRKARTHNPYK 1310 Query 780 ANQKLSSMYACNGLHTAGC 798 + L+++Y + LH AGC Sbjct 1311 LSSTLTNIYTGSRLHEAGC 1329 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Venezuelan equine encephalitis virus (strain Trinidad donkey)] Sequence ID: P27282.3 Length: 2493 Range 1: 536 to 1329 Score:976 bits(2522), Expect:0.0, Method:Compositional matrix adjust., Identities:470/799(59%), Positives:585/799(73%), Gaps:6/799(0%) Query 1 GVVETPRNALKVTPQAHDHLIGSYLILSPQTVLKSEKLAPIHPLAEQVTVMTHSGRSGRY 60 G VETPR +KVT A + IGSY +LSPQ VLKSEKL+ IHPLAEQV V+THSGR GRY Sbjct 536 GSVETPRGLIKVTSYAGEDKIGSYAVLSPQAVLKSEKLSCIHPLAEQVIVITHSGRKGRY 595 Query 61 PVDKYDGRVLIPTGAAIPVSEFQALSESATMVYNEREFINRKLHHIALYGPALNTDEESY 120 V+ Y G+V++P G AIPV +FQALSESAT+VYNEREF+NR LHHIA +G ALNTDEE Y Sbjct 596 AVEPYHGKVVVPEGHAIPVQDFQALSESATIVYNEREFVNRYLHHIATHGGALNTDEEYY 655 Query 121 EKVRAERAETEYVFDVDKKACIKKEEASGLVLTGDLINPPFHEFAYEGLKIRPAAPYHTT 180 + V+ + EY++D+D+K C+KKE +GL LTG+L++PPFHEFAYE L+ RPAAPY Sbjct 656 KTVKPSEHDGEYLYDIDRKQCVKKELVTGLGLTGELVDPPFHEFAYESLRTRPAAPYQVP 715 Query 181 IIGVFGVPGSGKSAIIKNMVTTRDLVASGKKENCQEIMNDVKRQRGLDVTARTVDSILLN 240 IGV+GVPGSGKS IIK+ VT +DLV S KKENC EI+ DVK+ +GLDV ARTVDS+LLN Sbjct 716 TIGVYGVPGSGKSGIIKSAVTKKDLVVSAKKENCAEIIRDVKKMKGLDVNARTVDSVLLN 775 Query 241 GCKKGVENLYVDEAFACHSGTLLALIALVRPSGKVVLCGDPKQCGFFNLMQLKVHYNHNI 300 GCK VE LY+DEAFACH+GTL ALIA++RP K VLCGDPKQCGFFN+M LKVH+NH I Sbjct 776 GCKHPVETLYIDEAFACHAGTLRALIAIIRPK-KAVLCGDPKQCGFFNMMCLKVHFNHEI 834 Query 301 CTRVLHKSISRRCTLPVTAIVSTLHYQGKMRTTNRCNTPIQIDTTGSSKPASGDIVLTCF 360 CT+V HKSISRRCT VT++VSTL Y KMRTTN T I IDTTGS+KP D++LTCF Sbjct 835 CTQVFHKSISRRCTKSVTSVVSTLFYDKKMRTTNPKETKIVIDTTGSTKPKQDDLILTCF 894 Query 361 RGWVKQLQIDYRGHEVMTAAASQGLTRKGVYAVRQKVNENPLYSPLSEHVNVLLTRTENR 420 RGWVKQLQIDY+G+E+MTAAASQGLTRKGVYAVR KVNENPLY+P SEHVNVLLTRTE+R Sbjct 895 RGWVKQLQIDYKGNEIMTAAASQGLTRKGVYAVRYKVNENPLYAPTSEHVNVLLTRTEDR 954 Query 421 LVWKTLSGDPWIKVLTNVPRGDFSATLEEWHEEHDGIMRVLNERPAEVDPFQNKAKVCWA 480 +VWKTL+GDPWIK LT G+F+AT+EEW EHD IMR + ERP D FQNKA VCWA Sbjct 955 IVWKTLAGDPWIKTLTAKYPGNFTATIEEWQAEHDAIMRHILERPDPTDVFQNKANVCWA 1014 Query 481 KCLVQVLETAGIRMTADEWNTILAFREDRAYSPEVALNEICTRYYGVDLDSGLFSAQSVS 540 K LV VL+TAGI MT ++WNT+ F D+A+S E+ LN++C R++G+DLDSGLFSA +V Sbjct 1015 KALVPVLKTAGIDMTTEQWNTVDYFETDKAHSAEIVLNQLCVRFFGLDLDSGLFSAPTVP 1074 Query 541 LFYENNHWDNRPGGRMYGFNHEVARKYAARFPFLRGNMNSGLQLNVPERKLQPFSAECNI 600 L NNHWDN P MYG N EV R+ + R+P L + +G ++ L+ + N+ Sbjct 1075 LSIRNNHWDNSPSPNMYGLNKEVVRQLSRRYPQLPRAVATGRVYDMNTGTLRNYDPRINL 1134 Query 601 VPSNRRLPHALVTSYQQCRGERVEWLLKKIPGHQMLLVSEYNLVIPHKRVFWIAP-PRVS 659 VP NRRLPHALV + + + K+ G +L+V E L +P K V W++ P + Sbjct 1135 VPVNRRLPHALVLHHNEHPQSDFSSFVSKLKGRTVLVVGE-KLSVPGKMVDWLSDRPEAT 1193 Query 660 GADRTYDLDLGLPMDAGRYDLVFVNIHTEYRQHHYQQCVDHSMRLQMLGGDSLHLLRPGG 719 R LDLG+P D +YD++FVN+ T Y+ HHYQQC DH+++L ML + L PGG Sbjct 1194 FRAR---LDLGIPGDVPKYDIIFVNVRTPYKYHHYQQCEDHAIKLSMLTKKACLHLNPGG 1250 Query 720 SLLMRAYGYADRVSEMVVTALARKFSAFRVLRPACVTSNTEVFLLFSNFDNGRRAVTLHQ 779 + + YGYADR SE ++ A+AR+F RV +P TEV +F +D R ++ Sbjct 1251 TCVSIGYGYADRASESIIGAIARQFKFSRVCKPKSSLEETEVLFVFIGYDRKARTHNPYK 1310 Query 780 ANQKLSSMYACNGLHTAGC 798 + L+++Y + LH AGC Sbjct 1311 LSSTLTNIYTGSRLHEAGC 1329 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Eastern equine encephalitis virus (strain PE-0.0155)] Sequence ID: Q306W6.3 Length: 2471 Range 1: 534 to 1326 Score:956 bits(2471), Expect:0.0, Method:Compositional matrix adjust., Identities:468/799(59%), Positives:578/799(72%), Gaps:8/799(1%) Query 1 GVVETPRNALKVTPQAHDHLIGSYLILSPQTVLKSEKLAPIHPLAEQVTVMTHSGRSGRY 60 G VETPR +KVT + +IGSY +LSPQ VL SEKLA IHPLAEQV VMTH GR+GRY Sbjct 534 GSVETPRRHIKVTTYPGEEMIGSYAVLSPQAVLNSEKLACIHPLAEQVLVMTHKGRAGRY 593 Query 61 PVDKYDGRVLIPTGAAIPVSEFQALSESATMVYNEREFINRKLHHIALYGPALNTDEESY 120 V+ Y GRV++P+G AIP+ +FQALSESAT+VYNEREF+NR LHHIA+ G ALNTDEE Y Sbjct 594 KVEPYHGRVIVPSGTAIPIPDFQALSESATIVYNEREFVNRYLHHIAINGGALNTDEEYY 653 Query 121 EKVRAERAETEYVFDVDKKACIKKEEASGLVLTGDLINPPFHEFAYEGLKIRPAAPYHTT 180 + +R+ AE+EYVFD+D K C+KK EA + L GDL++PPFHEFAYE LK RPAAP+ Sbjct 654 KVLRSGEAESEYVFDIDAKKCVKKAEAGPMCLVGDLVDPPFHEFAYESLKTRPAAPHKVP 713 Query 181 IIGVFGVPGSGKSAIIKNMVTTRDLVASGKKENCQEIMNDVKRQRGLDVTARTVDSILLN 240 IGV+GVPGSGKS IIK+ VT RDLV S KKENC EI+ DVKR RG+DV ARTVDS+LLN Sbjct 714 TIGVYGVPGSGKSGIIKSAVTKRDLVVSAKKENCTEIIKDVKRMRGMDVAARTVDSVLLN 773 Query 241 GCKKGVENLYVDEAFACHSGTLLALIALVRPSGKVVLCGDPKQCGFFNLMQLKVHYNHNI 300 G K V+ LY+DEAFACH+GTLLALIA+V+P KVVLCGDPKQCGFFN+M LKVH+NH I Sbjct 774 GVKHPVDTLYIDEAFACHAGTLLALIAIVKPK-KVVLCGDPKQCGFFNMMCLKVHFNHEI 832 Query 301 CTRVLHKSISRRCTLPVTAIVSTLHYQGKMRTTNRCNTPIQIDTTGSSKPASGDIVLTCF 360 CT V HKSISRRCT VTAIVSTL Y +MRT N C+ I IDTT ++KP DI+LTCF Sbjct 833 CTEVYHKSISRRCTRTVTAIVSTLFYDKRMRTVNPCSDKIIIDTTSTTKPLKDDIILTCF 892 Query 361 RGWVKQLQIDYRGHEVMTAAASQGLTRKGVYAVRQKVNENPLYSPLSEHVNVLLTRTENR 420 RGWVKQLQIDY+ HE+MTAAASQGLTRKGVYAVR KVNENPLY+ SEHVNVLLTRTE R Sbjct 893 RGWVKQLQIDYKNHEIMTAAASQGLTRKGVYAVRYKVNENPLYAQTSEHVNVLLTRTEKR 952 Query 421 LVWKTLSGDPWIKVLTNVPRGDFSATLEEWHEEHDGIMRVLNERPAEVDPFQNKAKVCWA 480 +VWKTL+GDPWIK LT G+FSATLEEW EHD IM+ + E PA D +QNK VCWA Sbjct 953 IVWKTLAGDPWIKTLTAHYPGEFSATLEEWQAEHDAIMKRVLETPANSDVYQNKVHVCWA 1012 Query 481 KCLVQVLETAGIRMTADEWNTILAFREDRAYSPEVALNEICTRYYGVDLDSGLFSAQSVS 540 K L VL TA I +T +W TI AF++D+A+SPE+ALN +CTR++GVD+DSGLFSA +V Sbjct 1013 KALEPVLATANITLTRSQWETIPAFKDDKAFSPEMALNFLCTRFFGVDIDSGLFSAPTVP 1072 Query 541 LFYENNHWDNRPGGRMYGFNHEVARKYAARFPFLRGNMNSGLQLNVPERKLQPFSAECNI 600 L Y N HWDN PG YG A++ A R+P + +++G +V ++ ++ N+ Sbjct 1073 LTYTNEHWDNSPGPNRYGLCMRTAKELARRYPCILKAVDTGRVADVRTNTIRDYNPMINV 1132 Query 601 VPSNRRLPHALVTSYQQCRGERVEWLLKKIPGHQMLLVSEYNLVIPHKRVFWIAPPRVSG 660 VP NRRLPH+LV S++ LL K+ G +L++ + +P KRV + P G Sbjct 1133 VPLNRRLPHSLVVSHRYTGDGNYSQLLSKLTGKTILVIGT-PINVPGKRVETLGP----G 1187 Query 661 ADRTY--DLDLGLPMDAGRYDLVFVNIHTEYRQHHYQQCVDHSMRLQMLGGDSLHLLRPG 718 TY DLDLG+P G+YD++FVN+ T Y+ HHYQQC DH++ ML ++ L G Sbjct 1188 PQCTYKADLDLGIPSMIGKYDIIFVNVRTPYKHHHYQQCEDHAIHHSMLTRKAVDHLNKG 1247 Query 719 GSLLMRAYGYADRVSEMVVTALARKFSAFRVLRPACVTSNTEVFLLFSNFDNGRRAVTLH 778 G+ + YG ADR +E +++A+AR F RV +P C NTEV +F DNG Sbjct 1248 GTCVALGYGTADRATENIISAVARSFRFSRVCQPKCAWENTEVAFVFFGKDNGNHLRDQD 1307 Query 779 QANQKLSSMYACNGLHTAG 797 Q + L+++Y + + AG Sbjct 1308 QLSVVLNNIYQGSTQYEAG 1326 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Eastern equine encephalitis virus (strain Florida 91-469)] Sequence ID: Q4QXJ8.3 Length: 2494 Range 1: 534 to 1326 Score:949 bits(2453), Expect:0.0, Method:Compositional matrix adjust., Identities:462/799(58%), Positives:575/799(71%), Gaps:8/799(1%) Query 1 GVVETPRNALKVTPQAHDHLIGSYLILSPQTVLKSEKLAPIHPLAEQVTVMTHSGRSGRY 60 G VETPR +KVT + +IGSY +LSPQ VL SEKLA IHPLAEQV VMTH GR+GRY Sbjct 534 GSVETPRRHIKVTTYPGEEMIGSYAVLSPQAVLNSEKLACIHPLAEQVLVMTHKGRAGRY 593 Query 61 PVDKYDGRVLIPTGAAIPVSEFQALSESATMVYNEREFINRKLHHIALYGPALNTDEESY 120 V+ Y GRV++P+G AIP+ +FQALSESAT+V+NEREF+NR LHHIA+ G ALNTDEE Y Sbjct 594 KVEPYHGRVIVPSGTAIPILDFQALSESATIVFNEREFVNRYLHHIAVNGGALNTDEEYY 653 Query 121 EKVRAERAETEYVFDVDKKACIKKEEASGLVLTGDLINPPFHEFAYEGLKIRPAAPYHTT 180 + V++ ++EYVFD+D K C+KK +A + L G+L++PPFHEFAYE LK RPAAP+ Sbjct 654 KVVKSTETDSEYVFDIDAKKCVKKGDAGPMCLVGELVDPPFHEFAYESLKTRPAAPHKVP 713 Query 181 IIGVFGVPGSGKSAIIKNMVTTRDLVASGKKENCQEIMNDVKRQRGLDVTARTVDSILLN 240 IGV+GVPGSGKS IIK+ VT RDLV S KKENC EI+ DVKR RG+D+ ARTVDS+LLN Sbjct 714 TIGVYGVPGSGKSGIIKSAVTKRDLVVSAKKENCMEIIKDVKRMRGMDIAARTVDSVLLN 773 Query 241 GCKKGVENLYVDEAFACHSGTLLALIALVRPSGKVVLCGDPKQCGFFNLMQLKVHYNHNI 300 G K V+ LY+DEAFACH+GTLLALIA+V+P KVVLCGDPKQCGFFN+M LKVH+NH I Sbjct 774 GVKHSVDTLYIDEAFACHAGTLLALIAIVKPK-KVVLCGDPKQCGFFNMMCLKVHFNHEI 832 Query 301 CTRVLHKSISRRCTLPVTAIVSTLHYQGKMRTTNRCNTPIQIDTTGSSKPASGDIVLTCF 360 CT V HKSISRRCT VT+IVSTL Y +MRT N CN I IDTT ++KP DI+LTCF Sbjct 833 CTEVYHKSISRRCTKTVTSIVSTLFYDKRMRTVNPCNDKIIIDTTSTTKPLKDDIILTCF 892 Query 361 RGWVKQLQIDYRGHEVMTAAASQGLTRKGVYAVRQKVNENPLYSPLSEHVNVLLTRTENR 420 RGWVKQLQIDY+ HE+MTAAASQGLTRKGVYAVR KVNENPLY+ SEHVNVLLTRTE R Sbjct 893 RGWVKQLQIDYKNHEIMTAAASQGLTRKGVYAVRYKVNENPLYAQTSEHVNVLLTRTEKR 952 Query 421 LVWKTLSGDPWIKVLTNVPRGDFSATLEEWHEEHDGIMRVLNERPAEVDPFQNKAKVCWA 480 +VWKTL+GDPWIK LT G+F+ATLEEW EHD IM + E PA D FQNK VCWA Sbjct 953 IVWKTLAGDPWIKTLTASYPGNFTATLEEWQAEHDAIMAKILETPASSDVFQNKVNVCWA 1012 Query 481 KCLVQVLETAGIRMTADEWNTILAFREDRAYSPEVALNEICTRYYGVDLDSGLFSAQSVS 540 K L VL TA I +T +W TI AF++D+AYSPE+ALN CTR++GVD+DSGLFSA +V Sbjct 1013 KALEPVLATANITLTRSQWETIPAFKDDKAYSPEMALNFFCTRFFGVDIDSGLFSAPTVP 1072 Query 541 LFYENNHWDNRPGGRMYGFNHEVARKYAARFPFLRGNMNSGLQLNVPERKLQPFSAECNI 600 L Y N HWDN PG MYG A++ A R+P + +++G +V ++ ++ N+ Sbjct 1073 LTYTNEHWDNSPGPNMYGLCMRTAKELARRYPCILKAVDTGRVADVRTDTIKDYNPLINV 1132 Query 601 VPSNRRLPHALVTSYQQCRGERVEWLLKKIPGHQMLLVSEYNLVIPHKRVFWIAPPRVSG 660 VP NRRLPH+LV +++ L+ K+ G +L+V + IP KRV + P Sbjct 1133 VPLNRRLPHSLVVTHRYTGNGDYSQLVTKMTGKTVLVVGT-PMNIPGKRVETLGP----S 1187 Query 661 ADRTY--DLDLGLPMDAGRYDLVFVNIHTEYRQHHYQQCVDHSMRLQMLGGDSLHLLRPG 718 TY +LDLG+P G+YD++F+N+ T YR HHYQQC DH++ ML ++ L G Sbjct 1188 PQCTYKAELDLGIPAALGKYDIIFINVRTPYRHHHYQQCEDHAIHHSMLTRKAVDHLNKG 1247 Query 719 GSLLMRAYGYADRVSEMVVTALARKFSAFRVLRPACVTSNTEVFLLFSNFDNGRRAVTLH 778 G+ + YG ADR +E +++A+AR F RV +P C NTEV +F DNG Sbjct 1248 GTCIALGYGTADRATENIISAVARSFRFSRVCQPKCAWENTEVAFVFFGKDNGNHLQDQD 1307 Query 779 QANQKLSSMYACNGLHTAG 797 + + L+++Y + H AG Sbjct 1308 RLSVVLNNIYQGSTQHEAG 1326 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Eastern equine encephalitis virus (strain PE-3.0815)] Sequence ID: Q306W8.3 Length: 2474 Range 1: 534 to 1326 Score:948 bits(2451), Expect:0.0, Method:Compositional matrix adjust., Identities:463/799(58%), Positives:576/799(72%), Gaps:8/799(1%) Query 1 GVVETPRNALKVTPQAHDHLIGSYLILSPQTVLKSEKLAPIHPLAEQVTVMTHSGRSGRY 60 G VETPR +KVT + IGSY +LSPQ VL SEKLA IHPLAEQV VMTH GR+GRY Sbjct 534 GSVETPRRHIKVTTYPGEETIGSYAVLSPQAVLNSEKLACIHPLAEQVLVMTHKGRAGRY 593 Query 61 PVDKYDGRVLIPTGAAIPVSEFQALSESATMVYNEREFINRKLHHIALYGPALNTDEESY 120 V+ Y GRV++P+G AIP+ +FQALSESAT+VYNEREF+NR LHHIA+ G A+NTDEE Y Sbjct 594 KVEPYHGRVVVPSGTAIPIPDFQALSESATIVYNEREFVNRYLHHIAINGGAINTDEEYY 653 Query 121 EKVRAERAETEYVFDVDKKACIKKEEASGLVLTGDLINPPFHEFAYEGLKIRPAAPYHTT 180 + +R+ A++EYVFD+D + C+KK +A + L G+L++PPFHEFAYE LK RPAAP+ Sbjct 654 KVLRSSEADSEYVFDIDARKCVKKADAGPMCLVGELVDPPFHEFAYESLKTRPAAPHKVP 713 Query 181 IIGVFGVPGSGKSAIIKNMVTTRDLVASGKKENCQEIMNDVKRQRGLDVTARTVDSILLN 240 IGV+GVPGSGKS IIK+ VT RDLV S KKENC EI+ DVKR RG+D+ ARTVDS+LLN Sbjct 714 TIGVYGVPGSGKSGIIKSAVTKRDLVVSAKKENCTEIIKDVKRMRGMDIAARTVDSVLLN 773 Query 241 GCKKGVENLYVDEAFACHSGTLLALIALVRPSGKVVLCGDPKQCGFFNLMQLKVHYNHNI 300 G K V+ LY+DEAFACH+GTLLALIA+V+P KVVLCGDPKQCGFFN+M LKVH+NH I Sbjct 774 GVKHPVDTLYIDEAFACHAGTLLALIAIVKPK-KVVLCGDPKQCGFFNMMCLKVHFNHEI 832 Query 301 CTRVLHKSISRRCTLPVTAIVSTLHYQGKMRTTNRCNTPIQIDTTGSSKPASGDIVLTCF 360 CT V HKSISRRCT VTAIVSTL Y +MRT N C+ I IDTT ++KP DI+LTCF Sbjct 833 CTEVYHKSISRRCTKTVTAIVSTLFYDKRMRTVNPCSDKIIIDTTSTTKPQRDDIILTCF 892 Query 361 RGWVKQLQIDYRGHEVMTAAASQGLTRKGVYAVRQKVNENPLYSPLSEHVNVLLTRTENR 420 RGWVKQLQIDY+ HE+MTAAASQGLTRKGVYAVR KVNENPLY+ SEHVNVLLTRTE R Sbjct 893 RGWVKQLQIDYKNHEIMTAAASQGLTRKGVYAVRYKVNENPLYAQTSEHVNVLLTRTEKR 952 Query 421 LVWKTLSGDPWIKVLTNVPRGDFSATLEEWHEEHDGIMRVLNERPAEVDPFQNKAKVCWA 480 +VWKTL+GDPWIK LT G+FSATLEEW EHD IM + E PA D +QNK VCWA Sbjct 953 IVWKTLAGDPWIKTLTAHYPGEFSATLEEWQAEHDAIMERILETPASSDVYQNKVHVCWA 1012 Query 481 KCLVQVLETAGIRMTADEWNTILAFREDRAYSPEVALNEICTRYYGVDLDSGLFSAQSVS 540 K L VL TA I +T +W TI AF++D+A+SPE+ALN +CTR++GVD+DSGLFSA +V Sbjct 1013 KALEPVLATANITLTRSQWETIPAFKDDKAFSPEMALNFLCTRFFGVDIDSGLFSAPTVP 1072 Query 541 LFYENNHWDNRPGGRMYGFNHEVARKYAARFPFLRGNMNSGLQLNVPERKLQPFSAECNI 600 L Y N HWDN PG YG A++ A R+P + +++G +V ++ +S N+ Sbjct 1073 LTYTNEHWDNSPGPNRYGLCMRTAKELARRYPCILKAVDTGRLADVRTNTIKDYSPLINV 1132 Query 601 VPSNRRLPHALVTSYQQCRGERVEWLLKKIPGHQMLLVSEYNLVIPHKRVFWIAPPRVSG 660 VP NRRLPH+LV S++ LL K+ G +L++ + +P KRV + P G Sbjct 1133 VPLNRRLPHSLVVSHRYTGDGNYSQLLSKLIGKTVLVIGT-PISVPGKRVETLGP----G 1187 Query 661 ADRTY--DLDLGLPMDAGRYDLVFVNIHTEYRQHHYQQCVDHSMRLQMLGGDSLHLLRPG 718 TY DLDLG+P G+YD++FVN+ T Y+ HHYQQC DH++ ML ++ L G Sbjct 1188 PQCTYKADLDLGIPSTIGKYDIIFVNVRTPYKHHHYQQCEDHAIHHSMLTRKAVDHLNKG 1247 Query 719 GSLLMRAYGYADRVSEMVVTALARKFSAFRVLRPACVTSNTEVFLLFSNFDNGRRAVTLH 778 G+ + YG ADR +E +++A+AR F RV +P C NTEV +F DNG Sbjct 1248 GTCVALGYGTADRATENIISAVARSFRFSRVCQPKCAWENTEVAFVFFGKDNGNHLRDQD 1307 Query 779 QANQKLSSMYACNGLHTAG 797 Q + L+++Y + + AG Sbjct 1308 QLSIVLNNIYQGSTQYEAG 1326 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Western equine encephalitis virus] Sequence ID: P13896.3 Length: 2467 Range 1: 534 to 1326 Score:924 bits(2387), Expect:0.0, Method:Compositional matrix adjust., Identities:455/797(57%), Positives:572/797(71%), Gaps:4/797(0%) Query 1 GVVETPRNALKVTPQAHDHLIGSYLILSPQTVLKSEKLAPIHPLAEQVTVMTHSGRSGRY 60 G VETPR ++VT + IGSY ILSPQ VL SEKLA IHPLAEQV VMTH GR+GRY Sbjct 534 GSVETPRGHIRVTSYPGEEKIGSYAILSPQAVLNSEKLACIHPLAEQVLVMTHKGRAGRY 593 Query 61 PVDKYDGRVLIPTGAAIPVSEFQALSESATMVYNEREFINRKLHHIALYGPALNTDEESY 120 V+ Y G+V++P G A+PV +FQALSESAT+V+NEREF+NR LHHIA+ G ALNTDEE Y Sbjct 594 KVEPYHGKVIVPEGTAVPVQDFQALSESATIVFNEREFVNRYLHHIAINGGALNTDEEYY 653 Query 121 EKVRAERAETEYVFDVDKKACIKKEEASGLVLTGDLINPPFHEFAYEGLKIRPAAPYHTT 180 + V+ + ++EYVFD+D + C+K+E+A L LTGDL++PPFHEFAYE LK RPAAP+ Sbjct 654 KTVKTQDTDSEYVFDIDARKCVKREDAGPLCLTGDLVDPPFHEFAYESLKTRPAAPHKVP 713 Query 181 IIGVFGVPGSGKSAIIKNMVTTRDLVASGKKENCQEIMNDVKRQRGLDVTARTVDSILLN 240 IGV+GVPGSGKS IIK+ VT +DLV S KKENC EI+ DV+R R +DV ARTVDS+LLN Sbjct 714 TIGVYGVPGSGKSGIIKSAVTKKDLVVSAKKENCAEIIRDVRRMRRMDVAARTVDSVLLN 773 Query 241 GCKKGVENLYVDEAFACHSGTLLALIALVRPSGKVVLCGDPKQCGFFNLMQLKVHYNHNI 300 G K V LY+DEAFACH+GTLLALIA+V+P KVVLCGDPKQCGFFN+M LKVH+NH+I Sbjct 774 GVKHPVNTLYIDEAFACHAGTLLALIAIVKPK-KVVLCGDPKQCGFFNMMCLKVHFNHDI 832 Query 301 CTRVLHKSISRRCTLPVTAIVSTLHYQGKMRTTNRCNTPIQIDTTGSSKPASGDIVLTCF 360 CT V HKSISRRCT VTAIVSTL Y +M+T N C I IDTTG++KP D++LTCF Sbjct 833 CTEVYHKSISRRCTQTVTAIVSTLFYDKRMKTVNPCADKIIIDTTGTTKPHKDDLILTCF 892 Query 361 RGWVKQLQIDYRGHEVMTAAASQGLTRKGVYAVRQKVNENPLYSPLSEHVNVLLTRTENR 420 RGWVKQLQIDY+ HE+MTAAASQGLTRKGVYAVR KVNENPLYS SEHVNVLLTRTE R Sbjct 893 RGWVKQLQIDYKNHEIMTAAASQGLTRKGVYAVRYKVNENPLYSQTSEHVNVLLTRTEKR 952 Query 421 LVWKTLSGDPWIKVLTNVPRGDFSATLEEWHEEHDGIMRVLNERPAEVDPFQNKAKVCWA 480 +VWKTL+GDPWIK LT GDF+A+L++W EHD IM + ++P D FQNK VCWA Sbjct 953 IVWKTLAGDPWIKTLTAKYPGDFTASLDDWQREHDAIMARVLDKPQTADVFQNKVNVCWA 1012 Query 481 KCLVQVLETAGIRMTADEWNTILAFREDRAYSPEVALNEICTRYYGVDLDSGLFSAQSVS 540 K L VL TA I +T +W T+ F+ DRAYSPE+ALN CTR++GVDLDSGLFSA +V+ Sbjct 1013 KALEPVLATANIVLTRQQWETLHPFKHDRAYSPEMALNFFCTRFFGVDLDSGLFSAPTVA 1072 Query 541 LFYENNHWDNRPGGRMYGFNHEVARKYAARFPFLRGNMNSGLQLNVPERKLQPFSAECNI 600 L Y + HWDN PG MYG N EVA++ + R+P + +++G ++ ++ +S N+ Sbjct 1073 LTYRDQHWDNSPGKNMYGLNREVAKELSRRYPCITKAVDTGRVADIRNNTIKDYSPTINV 1132 Query 601 VPSNRRLPHALVTSYQQCRGERVEWLLKKIPGHQMLLVSEYNLVIPHKRVFWIAPPRVSG 660 VP NRRLPH+L+ ++ L K+ G +L++ + + IP K+V + P + Sbjct 1133 VPLNRRLPHSLIVDHKGQGTTDHSGFLSKMKGKSVLVIGD-PISIPGKKVESMGP--LPT 1189 Query 661 ADRTYDLDLGLPMDAGRYDLVFVNIHTEYRQHHYQQCVDHSMRLQMLGGDSLHLLRPGGS 720 DLDLG+P G+YD++FVN+ T YR HHYQQC DH++ ML ++H L GG+ Sbjct 1190 NTIRCDLDLGIPSHVGKYDIIFVNVRTPYRNHHYQQCEDHAIHHSMLTCKAVHHLNTGGT 1249 Query 721 LLMRAYGYADRVSEMVVTALARKFSAFRVLRPACVTSNTEVFLLFSNFDNGRRAVTLHQA 780 + YG ADR +E ++TA+AR F RV +P NTEV +F DNG + Sbjct 1250 CVAIGYGLADRATENIITAVARSFRFTRVCQPKNTAENTEVLFVFFGKDNGNHTHDQDRL 1309 Query 781 NQKLSSMYACNGLHTAG 797 L ++Y + + AG Sbjct 1310 GVVLDNIYQGSTRYEAG 1326 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Aura virus] Sequence ID: Q86924.3 Length: 2499 Range 1: 540 to 1336 Score:900 bits(2325), Expect:0.0, Method:Compositional matrix adjust., Identities:444/803(55%), Positives:561/803(69%), Gaps:21/803(2%) Query 1 GVVETPRNALKVTPQAHDHLIGSYLILSPQTVLKSEKLAPIHPLAEQVTVMTHSGRSGRY 60 +VETPR +K+ PQ D IGSY ++SP VL++++L PIH LAEQV ++TH GR+GRY Sbjct 540 ALVETPRGKIKIIPQEGDVRIGSYTVISPAAVLRNQQLEPIHELAEQVKIITHGGRTGRY 599 Query 61 PVDKYDGRVLIPTGAAIPVSEFQALSESATMVYNEREFINRKLHHIALYGPALNTDEESY 120 V+ YD +VL+PTG + F ALSESAT+VYNEREF+NRKLHHIA G A NT+EE Y Sbjct 600 SVEPYDAKVLLPTGCPMSWQHFAALSESATLVYNEREFLNRKLHHIATKGAAKNTEEEQY 659 Query 121 EKVRAERAETEYVFDVDKKACIKKEEASGLVLTGDLINPPFHEFAYEGLKIRPAAPYHTT 180 + +A+ + EYV+DVD + C+K+E A GLVL G+L NPP+HE AYEGL+ RPAAPYH Sbjct 660 KVCKAKDTDHEYVYDVDARKCVKREHAQGLVLVGELTNPPYHELAYEGLRTRPAAPYHIE 719 Query 181 IIGVFGVPGSGKSAIIKNMVTTRDLVASGKKENCQEIMNDVKRQRGLDVTARTVDSILLN 240 +GV G PGSGKSAIIK+ VT +DLV SGKKENC+EI NDV++ RG+ + RTVDS+LLN Sbjct 720 TLGVIGTPGSGKSAIIKSTVTLKDLVTSGKKENCKEIENDVQKMRGMTIATRTVDSVLLN 779 Query 241 GCKKGVENLYVDEAFACHSGTLLALIALVRPSGKVVLCGDPKQCGFFNLMQLKVHYNH-- 298 G KK V+ LYVDEAFACH+GTL+ALIA+V+P KVVLCGDPKQ FFNLMQLKV++N+ Sbjct 780 GWKKAVDVLYVDEAFACHAGTLMALIAIVKPRRKVVLCGDPKQWPFFNLMQLKVNFNNPE 839 Query 299 -NICTRVLHKSISRRCTLPVTAIVSTLHYQGKMRTTNRCNTPIQIDTTGSSKPASGDIVL 357 ++CT +K ISRRCT PVTAIVSTLHY GKMRTTN C I+ID GS+KP GDIVL Sbjct 840 RDLCTSTHYKYISRRCTQPVTAIVSTLHYDGKMRTTNPCKRAIEIDVNGSTKPKKGDIVL 899 Query 358 TCFRGWVKQLQIDYRGHEVMTAAASQGLTRKGVYAVRQKVNENPLYSPLSEHVNVLLTRT 417 TCFRGWVKQ QIDY G AASQGLTR+GVYAVRQKVNENPLY+ SEHVNVLLTRT Sbjct 900 TCFRGWVKQGQIDYPGPGGHDRAASQGLTRRGVYAVRQKVNENPLYAEKSEHVNVLLTRT 959 Query 418 ENRLVWKTLSGDPWIKVLTNVPRGDFSATLEEWHEEHDGIMRVLNERPAEVDPFQNKAKV 477 E+R+VWKTL GDPWIK LTNVP+G+F+ATLEEW EH+ IM+ +N DPF +K Sbjct 960 EDRIVWKTLQGDPWIKYLTNVPKGNFTATLEEWQAEHEDIMKAINSTSTVSDPFASKVNT 1019 Query 478 CWAKCLVQVLETAGIRMTADEWNTILA-FREDRAYSPEVALNEICTRYYGVDLDSGLFSA 536 CWAK ++ +L TAGI +T ++W + FR D+ YS AL+ ICT+ +G+DL SG+FS Sbjct 1020 CWAKAIIPILRTAGIELTFEQWEDLFPQFRNDQPYSVMYALDVICTKMFGMDLSSGIFSR 1079 Query 537 QSVSLFYE-------NNHWDNRPGGRMYGFNHEV---ARKYAARFPFLRGNMNSGLQLNV 586 + L + HWDN PGG+ +G+N V +KY +LR G Q+ Sbjct 1080 PEIPLTFHPADVGRVRAHWDNSPGGQKFGYNKAVIPTCKKYPV---YLRA--GKGDQILP 1134 Query 587 PERKLQPFSAECNIVPSNRRLPHALVTSYQQCRGERVEWLLKKIPGHQMLLVSEYNLVIP 646 ++ SA N+VP NR LPH+L S Q+ + L ++PGH MLLVS+ Sbjct 1135 IYGRVSVPSARNNLVPLNRNLPHSLTASLQKKEAAPLHKFLNQLPGHSMLLVSKETCYCV 1194 Query 647 HKRVFWIAPPRVSGADRTYDLDLGLPMDAGRYDLVFVNIHTEYRQHHYQQCVDHSMRLQM 706 KR+ W+AP V GAD +DL G P RYDLV VN+ YR HHYQQC +H+ ++ Sbjct 1195 SKRITWVAPLGVRGADHNHDLHFGFP-PLSRYDLVVVNMGQPYRFHHYQQCEEHAGLMRT 1253 Query 707 LGGDSLHLLRPGGSLLMRAYGYADRVSEMVVTALARKFSAFRVLRPACVTSNTEVFLLFS 766 L +L+ L+PGG+L ++AYG+AD SE VV +LARKF +RP+C NTE+F +F Sbjct 1254 LARSALNCLKPGGTLALKAYGFADSNSEDVVLSLARKFVRASAVRPSCTQFNTEMFFVFR 1313 Query 767 NFDNGR-RAVTLHQANQKLSSMY 788 DN R R T H N +S+++ Sbjct 1314 QLDNDRERQFTQHHLNLAVSNIF 1336 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Salmon pancreas disease virus] Sequence ID: Q8JJX1.1 Length: 2601 Range 1: 566 to 1391 Score:652 bits(1682), Expect:0.0, Method:Compositional matrix adjust., Identities:365/833(44%), Positives:498/833(59%), Gaps:52/833(6%) Query 2 VVETPRNALKVTPQAHDHLIGSYLILSPQTVLKSEKLAPI-HPLAEQVTVMTHSGRSGRY 60 +++ R +KV D+++G YL+LSP TVL++ KLA + PLAE+V H GR+GRY Sbjct 566 IIDCQRGTVKVITAFGDNMMGEYLVLSPVTVLRTRKLAILLGPLAEEVMQYVHKGRTGRY 625 Query 61 PVDKYDGRVLIPTGAAIPVSEFQALSESATMVYNEREFINRKLHHIALYGPALNTDEESY 120 ++K + +VLIPTG ++ FQAL+ESAT+ YN+ F R L +A G A NTDE Y Sbjct 626 AIEKNNLKVLIPTGVSLKTDHFQALAESATLTYNDYLFTCRTLDQLATRGSARNTDEVYY 685 Query 121 EKVRAERAETEYVFDVDKKACIKKEEASGLVLTGDLINPPFHEFAYEGLKIRPAAPYHTT 180 + V A +A EYV+++ K C+KKE+A+G VL GD+ NPP+H+FAYE L+ RPA + Sbjct 686 KLVDAAKARDEYVYELSSKQCVKKEDATGTVLQGDICNPPYHQFAYEALRKRPAHTHDVH 745 Query 181 IIGVFGVPGSGKSAIIKNMVTTRDLVASGKKENCQEIMNDVKRQRGLDVTARTVDSILLN 240 IG++GVPG+GK+AII VTTRDLVASGKKENC++I V +RGL + ARTVDS+ Sbjct 746 TIGIYGVPGAGKTAIITTEVTTRDLVASGKKENCEDIKRCVLERRGLKIAARTVDSLFYG 805 Query 241 GCKKGVENLYVDEAFACHSGTLLALIALVRPSGKVVLCGDPKQCGFFNLMQLKVHYNHNI 300 + V LYVDEA+ACHSGTLLALIA VRP+GKVVLCGDPKQ G N +Q+++HYNH I Sbjct 806 AYRGAVNTLYVDEAYACHSGTLLALIAAVRPTGKVVLCGDPKQVGCVNQLQMRMHYNHEI 865 Query 301 CTRVLHKSISRRCTLPVTAIVSTLHYQGKMRTTNRCNTPIQIDTTGSSKPASGDIVLTCF 360 RVL K+ISRRCT +TAIVS L+Y+G+M+TTN C P+ IDTTGS+KP +VLTCF Sbjct 866 SDRVLRKNISRRCTHTLTAIVSNLNYEGRMKTTNPCKKPVLIDTTGSTKPDKEALVLTCF 925 Query 361 RGWVKQLQIDYRGHEVMTAAASQGLTRKGVYAVRQKVNENPLYSPLSEHVNVLLTRTENR 420 RGWVK L+ Y +E+MTAAASQGLTR+ VYAVR +V NPLY P SEH+ VLLTRT + Sbjct 926 RGWVKDLKFLYPHNELMTAAASQGLTREKVYAVRCRVTTNPLYEPTSEHITVLLTRTNDE 985 Query 421 LVWKTLSGDPWIKVLTNVPRGDFSATLEEWHEEHDGIMRVLNERPAEVDPF-QNKAKVCW 479 LVWKTL DP I +L+ P+GD+SAT+E+W +EH+GI+ L E F K CW Sbjct 986 LVWKTLPNDPLIPILSKPPKGDYSATMEDWEDEHNGILAALREACVPRMNFAHGKRNTCW 1045 Query 480 AKCLVQVLETAGIRMTADEWNTIL-AFREDRAYSPEVALNEICTRYYGVDLDSGLFSAQS 538 A +VL AG+++T +++N I AFRED+ +S AL+ + T +G+D SG+ S + Sbjct 1046 AVTSSRVLHEAGVQITPEDYNRIFPAFREDKPHSALAALDAVATLVWGLDTSSGILSGKG 1105 Query 539 VSLFYENNHWDNRPGGRMYGFNHEVARKYAARFPFLRGNMNS--GLQL-NVPERKLQPFS 595 + EN+HW N G YG N + Y P + + G + ++ KL P Sbjct 1106 SFMRLENSHWSNSNRGYEYGLNLDALEGYEIANPRMIKALKQRRGRECYDIETGKLVPLD 1165 Query 596 AECNIVPSNRRLPHALVTSYQQCRGERVE-------W----------------LLKKIPG 632 VP NR +PH LV + + +E W L K++ Sbjct 1166 PARVQVPINRIVPHVLVDTSAAAKPGFLENRLTVDRWDQVHSFKTRAAVKFAELTKRVSY 1225 Query 633 HQMLL-------VSEYNL----VIPHKRVFWIAPPRVSGADRTYDLDLGLPM-DAGRYDL 680 + +L V++Y + + W PR GA D+ P+ + G +DL Sbjct 1226 NSVLDLGAAPGGVTDYCVKKGKTVTSVSEQWDTKPR--GA-VVVTADINGPLNNLGIFDL 1282 Query 681 VFVNIHTEYRQHHYQQCVDHSMRLQMLGGDSLHLLRPGGSLLMRAYGYADRVSEMVVTAL 740 VF + R HHY QC DH++ + GG +++AYG ADR +E V Sbjct 1283 VFCDAAGPRRYHHYAQCEDHAVLFTSACKHGVERTAKGGVFIVKAYGMADRRTERAVEGT 1342 Query 741 ARKFSAFRVLRP-ACVTSNTEVFLLFSNFDNGR---RAVTLHQANQKLSSMYA 789 AR F + V +P + +N EVF FS GR A ++ +L+ +YA Sbjct 1343 ARYFRSVSVEKPVSSRITNVEVFFKFS----GRCRPHARSIAHLGPQLTDIYA 1391 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Sleeping disease virus] Sequence ID: Q8QL53.1 Length: 2593 Range 1: 565 to 1390 Score:645 bits(1664), Expect:0.0, Method:Compositional matrix adjust., Identities:369/834(44%), Positives:502/834(60%), Gaps:54/834(6%) Query 2 VVETPRNALKVTPQAHDHLIGSYLILSPQTVLKSEKLAPI-HPLAEQVTVMTHSGRSGRY 60 +++ R +KV D+ +G YL+LSP TVL++ KLA + PLAE+V H GR+GRY Sbjct 565 IIDCQRGTVKVITAFGDNTMGEYLVLSPVTVLRTRKLAVLLGPLAEEVMQYVHKGRTGRY 624 Query 61 PVDKYDGRVLIPTGAAIPVSEFQALSESATMVYNEREFINRKLHHIALYGPALNTDEESY 120 ++K + +VLIPTG ++ + FQAL+ESAT+ YN+ F R L +A G A NTDE Y Sbjct 625 AIEKNNLKVLIPTGVSLKTAHFQALTESATLTYNDYLFTCRTLDQLATRGSAKNTDEVYY 684 Query 121 EKVRAERAETEYVFDVDKKACIKKEEASGLVLTGDLINPPFHEFAYEGLKIRPAAPYHTT 180 + V A +A+ EYV+++ K C+KKE+A+G VL GD+ NPP+H+FA+E L+ RPA + Sbjct 685 KLVDAAKAKDEYVYELSSKQCVKKEDATGTVLQGDICNPPYHQFAFEALRKRPAHTHDVH 744 Query 181 IIGVFGVPGSGKSAIIKNMVTTRDLVASGKKENCQEIMNDVKRQRGLDVTARTVDSILLN 240 IG++GVPG+GK+AII VTTRDLVASGKKENC++I V +RGL + ARTVDS+L Sbjct 745 TIGIYGVPGAGKTAIITTEVTTRDLVASGKKENCEDIKRCVLERRGLKIAARTVDSLLYG 804 Query 241 GCKKGVENLYVDEAFACHSGTLLALIALVRPSGKVVLCGDPKQCGFFNLMQLKVHYNHNI 300 + V+ LYVDEA+ACHSGTLLALIA VRP+GKVVLCGDPKQ G N +Q+++HYNH I Sbjct 805 AYRGAVDTLYVDEAYACHSGTLLALIAAVRPTGKVVLCGDPKQVGCVNQLQMRMHYNHEI 864 Query 301 CTRVLHKSISRRCTLPVTAIVSTLHYQGKMRTTNRCNTPIQIDTTGSSKPASGDIVLTCF 360 RVL K+ISRRCT +TAIVS L+Y+G+M+TTN C P+ IDTTGS+KP +VLTCF Sbjct 865 SDRVLRKNISRRCTHTLTAIVSNLNYEGRMKTTNPCKKPVLIDTTGSTKPDKEALVLTCF 924 Query 361 RGWVKQLQIDYRGHEVMTAAASQGLTRKGVYAVRQKVNENPLYSPLSEHVNVLLTRTENR 420 RGWVK L+I Y +E+MTAAASQGLTR+ VYAVR +V NPLY P SEH+ VLLTRT + Sbjct 925 RGWVKDLKILYPHNELMTAAASQGLTREKVYAVRCRVTSNPLYEPTSEHITVLLTRTNDE 984 Query 421 LVWKTLSGDPWIKVLTNVPRGDFSATLEEWHEEHDGIMRVLNERPAEVDPF-QNKAKVCW 479 LVWKTL DP I +L+ P+GD+SAT+E+W +EH+GI+ L E F K CW Sbjct 985 LVWKTLPNDPLIPILSKPPKGDYSATMEDWEDEHNGILAALREACVPRMNFAHGKRNTCW 1044 Query 480 AKCLVQVLETAGIRMTADEWNTIL-AFREDRAYSPEVALNEICTRYYGVDLDSGLFSAQS 538 A +VL AG+ +T +++N I AFRED+ +S AL+ + +G+D SG+ S + Sbjct 1045 AVTSSRVLHEAGVLITPEDFNRIFPAFREDKPHSALAALDAVAALVWGLDTSSGILSGKG 1104 Query 539 VSLFYENNHWDNRPGGRMYGFNHEVARKYAARFPFLRGNMNS--GLQL-NVPERKLQPFS 595 + EN+HW N G YG N + Y P + + G + ++ KL P Sbjct 1105 SFMRLENSHWSNSNRGYEYGLNLDALEGYEIANPRMIKALKQRRGRECYDIETGKLVPMD 1164 Query 596 AECNIVPSNRRLPHALVTSYQQCRGERVE-------W----------------LLKKIPG 632 VP NR +PH LV + + +E W L K++ Sbjct 1165 PGRVQVPINRVVPHVLVDTSAAAKPGFLENRLSVDRWDQVHSFKTRAAVKFAELTKRVSY 1224 Query 633 HQMLL-------VSEYNLVIPHKRVF-----WIAPPRVSGADRTYDLDLGLPM-DAGRYD 679 + +L V++Y V K V W + PR GA D+ P+ + G +D Sbjct 1225 NSVLDLGAARGGVTDY-CVKKGKTVTCVSEQWDSKPR--GA-VVITADINGPLNNLGIFD 1280 Query 680 LVFVNIHTEYRQHHYQQCVDHSMRLQMLGGDSLHLLRPGGSLLMRAYGYADRVSEMVVTA 739 LVF + R HHY QC DH+ R + GG +++AYG ADR +E V Sbjct 1281 LVFCDAAGPRRYHHYAQCEDHARRSTSACKHGVERTAKGGVFIVKAYGMADRRTERAVEC 1340 Query 740 LARKFSAFRVLRP-ACVTSNTEVFLLFSNFDNGR---RAVTLHQANQKLSSMYA 789 AR F + V +P + +N EVF FS GR A ++ +L+ +YA Sbjct 1341 TARYFKSVSVEKPVSSRITNVEVFFKFS----GRCRPHARSIAHLGPQLTDIYA 1390 >RecName: Full=Replicase large subunit; AltName: Full=183 kDa protein; AltName: Full=RNA-directed RNA polymerase; Contains: RecName: Full=Replicase small subunit; AltName: Full=126 kDa protein; AltName: Full=Methyltransferase/RNA helicase; Short=MT/HEL [Odontoglossum ringspot virus (isolate Korean Cy)] Sequence ID: P89659.2 Length: 1612 Range 1: 809 to 1100 Score:77.4 bits(189), Expect:3e-13, Method:Compositional matrix adjust., Identities:82/297(28%), Positives:124/297(41%), Gaps:27/297(9%) Query 169 LKIRPAAPYHTTIIGVFGVPGSGKSA-IIKNMVTTRDLVASGKKENCQEIMNDVKRQ--- 224 LK P + V GVPG GK+ I++ + DL+ KE C+ I+ + Sbjct 809 LKDGEPVPSDAKVTLVDGVPGCGKTKEILETVNFDEDLILVPGKEACKMIIKRANKSGHV 868 Query 225 RGLDVTARTVDSILLNGCKKGVENLYVDEAFACHSGTLLALIALVRPSGKVVLCGDPKQC 284 R RTVDS L++ K L++DE H+G + LIAL +V GD +Q Sbjct 869 RATKDNVRTVDSFLMHLKPKTYNKLFIDEGLMLHTGCVNFLIALSHCREAMVF-GDTEQI 927 Query 285 GFFNLMQLKVHYNHNICTRVLHKSISR---RCTLPVTAIVSTLHYQGKMRTTNRCNTPIQ 341 F N + + H H+ + R RC VT +++ Y GK+ TN + Sbjct 928 PFINRVANFPYPKHFATLVYDHREVRRLSLRCPADVTHFMNS-KYDGKVLCTNDVIRSVD 986 Query 342 IDTT-------GSSKPASGDIVLTCFRGWVKQLQIDYRGH-------EVMTAAASQGLTR 387 + SKP G I+ + ++ RG+ E+ T QG T Sbjct 987 AEVVRGKGVFNPKSKPLKGKIITFT---QSDKAELKERGYEEVSTFGEINTVHEIQGETF 1043 Query 388 KGVYAVRQKVNENPLYSPLSEHVNVLLTRTENRLVWKTLSGDPWIKVLTNVPR-GDF 443 + V VR L S S HV V LTR + ++ DP +KV +++ + DF Sbjct 1044 EDVSVVRLTPTPLELISKSSPHVLVALTRHTKSFKYYSVVLDPLVKVCSDLSKVSDF 1100 >RecName: Full=Replicase large subunit; AltName: Full=183 kDa protein; AltName: Full=RNA-directed RNA polymerase; Contains: RecName: Full=Replicase small subunit; AltName: Full=126 kDa protein; AltName: Full=Methyltransferase/RNA helicase; Short=MT/HEL [Odontoglossum ringspot virus (isolate Singapore 1)] Sequence ID: Q84133.2 Length: 1612 Range 1: 824 to 1100 Score:77.0 bits(188), Expect:4e-13, Method:Compositional matrix adjust., Identities:79/282(28%), Positives:122/282(43%), Gaps:27/282(9%) Query 184 VFGVPGSGKSA-IIKNMVTTRDLVASGKKENCQEIMNDVKRQ---RGLDVTARTVDSILL 239 V GVPG GK+ I++ + DL+ KE C+ I+ + R RTVDS L+ Sbjct 824 VDGVPGCGKTKEILETVNFDEDLILVPGKEACKMIIKRANKSGHVRATRDNVRTVDSFLM 883 Query 240 NGCKKGVENLYVDEAFACHSGTLLALIALVRPSGKVVLCGDPKQCGFFNLMQLKVHYNHN 299 + K L++DE H+G + L+AL +V GD +Q F N + + H Sbjct 884 HLKPKTYNKLFIDEGLMLHTGCVNFLVALSHCREAMVF-GDAEQIPFINRVANFPYPKHF 942 Query 300 ICTRVLHKSISR---RCTLPVTAIVSTLHYQGKMRTTNRCNTPIQIDTT-------GSSK 349 T + H+ + R RC VT +++ Y GK+ TN + + SK Sbjct 943 RYTCLYHREVRRLSLRCPADVTHFMNS-KYDGKVLCTNDVIRSVDAEVVRGKGVFNPKSK 1001 Query 350 PASGDIVLTCFRGWVKQLQIDYRGH-------EVMTAAASQGLTRKGVYAVRQKVNENPL 402 P G I+ + ++ RG+ E+ T QG T + V VR L Sbjct 1002 PLKGKIITFT---QSDKAELKERGYEEVSTFGEINTVHEIQGETFEDVSVVRLTPTPLEL 1058 Query 403 YSPLSEHVNVLLTRTENRLVWKTLSGDPWIKVLTNVPR-GDF 443 S S HV V LTR + ++ DP +KV +++ + DF Sbjct 1059 ISKSSPHVLVALTRHTKSFKYYSVVLDPLVKVWSDLSKVSDF 1100 >RecName: Full=Replicase large subunit; AltName: Full=183 kDa protein; AltName: Full=RNA-directed RNA polymerase; Contains: RecName: Full=Replicase small subunit; AltName: Full=126 kDa protein; AltName: Full=Methyltransferase/RNA helicase; Short=MT/HEL [Sunn-hemp mosaic virus] Sequence ID: P89202.2 Length: 1629 Range 1: 843 to 1103 Score:67.8 bits(164), Expect:3e-10, Method:Compositional matrix adjust., Identities:69/267(26%), Positives:109/267(40%), Gaps:23/267(8%) Query 180 TIIGVFGVPGSGKSA-IIKNMVTTRDLVASGKKENCQEI---MNDVKRQRGLDVTARTVD 235 TI V GVPG GK+ I+ DL+ +E C+ I ND RT D Sbjct 843 TITLVDGVPGCGKTQEILSRFDANSDLILVQGREACEMIRRRANDNVPGSATKENVRTFD 902 Query 236 SILLNGCKKGVENLYVDEAFACHSGTLLALIALVRPSGKVVLCGDPKQCGFFN-LMQL-- 292 S ++N + L+VDE H G L+ + V + GD KQ F N +M Sbjct 903 SFVMNRKPGKFKTLWVDEGLMVHPG-LINFCINISCVSSVYIFGDRKQIPFINRVMNFSI 961 Query 293 -----KVHYNHNICTRVLHKSISRRCTLPVTAIVSTLHYQGKMRTTN-----RCNTPIQI 342 K++Y+ ++ + ++RC L VT +++++ + M +N C Sbjct 962 PDNLAKLYYDE-----IVSRDTTKRCPLDVTHFLNSVYEKRVMSYSNVQRSLECKMISGK 1016 Query 343 DTTGSSKPASGDIVLTCFRGWVKQLQIDYRGHEVMTAAASQGLTRKGVYAVRQKVNENPL 402 + + L F K+ + +V T +QG T + V +R + Sbjct 1017 AKINDYRSILAEGKLLTFTQEDKEYLLKAGFKDVNTVHEAQGETYRDVNLIRVTATPLTI 1076 Query 403 YSPLSEHVNVLLTRTENRLVWKTLSGD 429 S S HV V L+R NR V+ T+ D Sbjct 1077 VSAGSPHVTVALSRHTNRFVYYTVVPD 1103 >RecName: Full=Replicase large subunit; AltName: Full=183 kDa protein; AltName: Full=RNA-directed RNA polymerase; Contains: RecName: Full=Replicase small subunit; AltName: Full=126 kDa protein; AltName: Full=Methyltransferase/RNA helicase; Short=MT/HEL [Obuda pepper virus] Sequence ID: P90211.1 Length: 1616 Range 1: 819 to 1097 Score:66.2 bits(160), Expect:8e-10, Method:Compositional matrix adjust., Identities:75/283(27%), Positives:121/283(42%), Gaps:21/283(7%) Query 173 PAAPYHTTIIGVFGVPGSGKSA-IIKNMVTTRDLVASGKKENCQEIMNDVKRQRGL---D 228 P + + V GVPG GK+ I++ + + DLV KE I + + + Sbjct 819 PISVSSAKVTLVDGVPGCGKTKEILRRVNFSEDLVLVPGKEAAAMIRKRANQSGNIVANN 878 Query 229 VTARTVDSILLNGCKKGV---ENLYVDEAFACHSGTLLALIALVRPSGKVVLCGDPKQCG 285 +TVDS L+N K V + L+VDE H G + L+ L + V GD +Q Sbjct 879 DNVKTVDSFLMNLGKGPVCQFKRLFVDEGLMLHPGCVYFLVKLSLCNEAFVF-GDTQQIP 937 Query 286 FFNLMQ---LKVHYNHNICTRVLHKSISRRCTLPVTAIVSTLHYQGKMRTTNRCNTPIQI 342 + N +Q H++ I + + RC + VT ++ Y G + TT++ + + Sbjct 938 YINRVQNFPFPQHFSKLIVDETEKRRTTLRCPVDVTHFLNQC-YDGAVTTTSKTQRSVGL 996 Query 343 DTTGS-------SKPASGDIVLTCFRGWVKQLQIDYRGHEVMTAAASQGLTRKGVYAVRQ 395 + G +KP G IV + L Y+ +V T QG T + V VR Sbjct 997 EVVGGAAVMNPVTKPLKGKIVTFTQSDKLTMLSRGYQ--DVNTVHEIQGETYEEVSLVRL 1054 Query 396 KVNENPLYSPLSEHVNVLLTRTENRLVWKTLSGDPWIKVLTNV 438 + S S HV V LTR + T+ DP +K++ ++ Sbjct 1055 TPTPIHIISRESPHVLVGLTRHTRCFKYYTVVLDPLVKLVRDL 1097 >RecName: Full=Replicase large subunit; AltName: Full=186 kDa protein; Contains: RecName: Full=Replicase small subunit; AltName: Full=129 kDa protein; AltName: Full=Methyltransferase/RNA helicase; Short=MT/HEL [Cucumber green mottle mosaic virus (watermelon strain SH)] Sequence ID: P69514.1 Length: 1648 Range 1: 857 to 1130 Score:64.7 bits(156), Expect:3e-09, Method:Compositional matrix adjust., Identities:75/279(27%), Positives:119/279(42%), Gaps:19/279(6%) Query 178 HTTIIGVFGVPGSGKSA-IIKNMVTTRDLVASGKKENCQEIMNDV----KRQRGLDVTAR 232 H T++ GVPG GK+A II + DLV + +E I K + R Sbjct 857 HITLVD--GVPGCGKTAEIIARVNWKTDLVLTPGREAAAMIRRRACALHKSPVATNDNVR 914 Query 233 TVDSILLNGCKKGVENLYVDEAFACHSGTLLALIALVRPSGKVVLCGDPKQCGFFNLMQL 292 T DS ++N + +YVDE H+G LL + K + GD KQ F N + + Sbjct 915 TFDSFVMNRKIFKFDAVYVDEGLMVHTG-LLNFALKISGCKKAFVFGDAKQIPFINRV-M 972 Query 293 KVHYNHNICTRVL----HKSISRRCTLPVTAIVSTLHYQGKMRTTN---RCNTPIQIDTT 345 Y + T ++ + ++ RC VT+ ++T+ Y+ + TT+ I++ Sbjct 973 NFDYPKELRTLIVDNVERRYVTHRCPRDVTSFLNTI-YKAAVATTSPVVHSVKAIKVSGA 1031 Query 346 GSSKPASGDIV--LTCFRGWVKQLQIDYRGHEVMTAAASQGLTRKGVYAVRQKVNENPLY 403 G +P I + F KQ I ++V T QG T + VR L Sbjct 1032 GILRPELTKIKGKIITFTQSDKQSLIKSGYNDVNTVHEIQGETFEETAVVRATPTPIGLI 1091 Query 404 SPLSEHVNVLLTRTENRLVWKTLSGDPWIKVLTNVPRGD 442 + S HV V LTR +V+ T+ D ++ +V + D Sbjct 1092 ARDSPHVLVALTRHTKAMVYYTVVFDAVTSIIADVEKVD 1130 >RecName: Full=Replicase large subunit; AltName: Full=183 kDa protein; AltName: Full=RNA-directed RNA polymerase; Contains: RecName: Full=Replicase small subunit; AltName: Full=126 kDa protein; AltName: Full=Methyltransferase/RNA helicase; Short=MT/HEL [Tobacco mild green mosaic virus] Sequence ID: P18339.2 Length: 1609 Range 1: 814 to 1090 Score:63.9 bits(154), Expect:4e-09, Method:Compositional matrix adjust., Identities:72/282(26%), Positives:117/282(41%), Gaps:22/282(7%) Query 171 IRPAAPYHTT--IIGVFGVPGSGK-SAIIKNMVTTRDLVASGKKENCQEI---MNDVKRQ 224 +R P+ T ++ V GVPG GK + DL+ K+ I N Sbjct 814 MRDGEPHEPTAKMVLVDGVPGCGKYKGDFERFDLDEDLILVPGKQAAAMIRRRANSSGLI 873 Query 225 RGLDVTARTVDSILLNGCKKGVENLYVDEAFACHSGTLLALIALVRPSGKVVLCGDPKQC 284 R RTVDS+L++ + + L++DE H+G + L+ L+ + GD +Q Sbjct 874 RATMDNVRTVDSLLMHPKPRSHKRLFIDEGLMLHTGCVNFLV-LISGCDIAYIYGDTQQI 932 Query 285 GFFNLMQ---LKVHYNHNICTRVLHKSISRRCTLPVTAIVSTLHYQGKMRTTNRCNTPIQ 341 F N +Q H+ V + + RC V + + Y+G + TT+ + Sbjct 933 PFINRVQNFPYPKHFEKLQVDEVEMRRTTLRCPGDVNFFLQS-KYEGAVTTTSTVQRSVS 991 Query 342 IDTTGS-------SKPASGDIVLTCFRGWVKQLQIDYRGHE-VMTAAASQGLTRKGVYAV 393 + G SKP G IV + +++ +G++ V T QG T + V V Sbjct 992 SEMIGGKGVLNSVSKPLKGKIVTFT---QADKFELEEKGYKNVNTVHEIQGETFEDVSLV 1048 Query 394 RQKVNENPLYSPLSEHVNVLLTRTENRLVWKTLSGDPWIKVL 435 R L S S HV V LTR + T+ DP ++++ Sbjct 1049 RLTATPLTLISKSSPHVLVALTRHTKSFKYYTVVLDPLVQII 1090 >RecName: Full=Replicase large subunit; AltName: Full=RNA-directed RNA polymerase; Contains: RecName: Full=Replicase small subunit; AltName: Full=Methyltransferase/RNA helicase [Potato mop-top virus Sw] Sequence ID: Q9QBU0.3 Length: 1812 Range 1: 1009 to 1300 Score:60.8 bits(146), Expect:4e-08, Method:Compositional matrix adjust., Identities:77/294(26%), Positives:122/294(41%), Gaps:23/294(7%) Query 181 IIGVFGVPGSGKSA-IIKNMVTTRDLVASGKKENCQEIMNDVKRQRGLDVT----ARTVD 235 I V GVPG GKS ++K V + +E +++ K +R T RTVD Sbjct 1009 ITLVDGVPGCGKSTYVVKEANLVNQYVVTIGREAAEDLRERFKSERNATATQLKRVRTVD 1068 Query 236 SILLNGCKKGVENLYVDEAFACHSGTLLALIALVRPSGKVVLC-GDPKQCGFFNLMQ-LK 293 S LLN + L+ DEA H+G + S + V+C GD +Q F N ++ + Sbjct 1069 SYLLNDTQSRANVLHFDEALMAHAG--MVYFCADDLSARSVICQGDSQQIPFINRVESIT 1126 Query 294 VHYNHNICTRVLHKSISRRCTLPVTAIVSTLHYQGKMRTTNRCNTPIQIDTTG------- 346 + Y+ V+ K ++ R L V + ++ ++ G T+ + T G Sbjct 1127 LRYSKLEIDNVVEKRLTYRSPLDVASYLTKKNFYGTSVVTSANPLVRSLKTVGPRDGMTS 1186 Query 347 --SSKPASGDIVLTCFRGWVKQL-QIDYRGH-EVMTAAASQGLTRKGVYAVRQKVNENPL 402 S G LT + +++ Q RG+ V T SQG T V R K +N + Sbjct 1187 IYSIPKIPGTQYLTFLQSEKEEMRQYLGRGNWNVNTVHESQGKTYDNVVLCRLKATDNEI 1246 Query 403 Y---SPLSEHVNVLLTRTENRLVWKTLSGDPWIKVLTNVPRGDFSATLEEWHEE 453 Y S ++ V +TR LV+ T + D L + ++ HEE Sbjct 1247 YPGGRNSSPYMVVGVTRHRRSLVYYTKAEDKLYFDLAEMLSVQEGKLMKHLHEE 1300 >RecName: Full=Replicase large subunit; AltName: Full=183 kDa protein; AltName: Full=RNA-directed RNA polymerase; Contains: RecName: Full=Replicase small subunit; AltName: Full=126 kDa protein; AltName: Full=Methyltransferase/RNA helicase; Short=MT/HEL [Turnip vein-clearing virus] Sequence ID: Q88920.1 Length: 1601 Range 1: 814 to 1091 Score:60.5 bits(145), Expect:5e-08, Method:Compositional matrix adjust., Identities:70/283(25%), Positives:118/283(41%), Gaps:19/283(6%) Query 172 RPAAPYHTTIIGVFGVPGSGKSA-IIKNMVTTRDLVASGKKENCQEIM---NDVKRQRGL 227 P P + +I V GVPG GK+ II+ + + DL+ KE + I+ N R Sbjct 814 EPPEP-NAKVILVDGVPGCGKTKEIIEKVNFSEDLILVPGKEASKMIIRRANQAGVIRAD 872 Query 228 DVTARTVDSILLNGCKKGVENLYVDEAFACHSGTLLALIALVRPSGKVVLCGDPKQCGFF 287 RTVDS L++ ++ + L++DE H+G + L+ L + V GD KQ F Sbjct 873 KDNVRTVDSFLMHPSRRVFKRLFIDEGLMLHTGCVNFLLLLSQCDVAYVY-GDTKQIPFI 931 Query 288 NLMQ---LKVHYNHNICTRVLHKSISRRCTLPVTAIVSTLHYQGKMRTTNRCNTPIQIDT 344 + H+ + + ++ RC VT ++ Y G + T+ ++ + Sbjct 932 CRVANFPYPAHFAKLVADEKEVRRVTLRCPADVTYFLNK-KYDGAVMCTSAVERSVKAEV 990 Query 345 TGS-------SKPASGDIVLTCFRGWVKQLQIDYRGHEVMTAAASQGLTRKGVYAVRQKV 397 + P G I+ + L+ Y+ +V T QG T + VR Sbjct 991 VRGKGALNPITLPLEGKILTFTQADKFELLEKGYK--DVNTVHEVQGETYEKTAIVRLTS 1048 Query 398 NENPLYSPLSEHVNVLLTRTENRLVWKTLSGDPWIKVLTNVPR 440 + S S HV V LTR + T+ DP + V++ + + Sbjct 1049 TPLEIISSASPHVLVALTRHTTCCKYYTVVLDPMVNVISEMEK 1091 >RecName: Full=Replicase large subunit; AltName: Full=182 kDa protein; Contains: RecName: Full=Replicase small subunit; AltName: Full=125 kDa protein; AltName: Full=Methyltransferase/RNA helicase; Short=MT/HEL [Youcai mosaic virus] Sequence ID: Q66220.2 Length: 1597 Range 1: 818 to 1101 Score:58.5 bits(140), Expect:2e-07, Method:Compositional matrix adjust., Identities:73/290(25%), Positives:118/290(40%), Gaps:20/290(6%) Query 181 IIGVFGVPGSGKSA-IIKNMVTTRDLVASGKKENCQEIM---NDVKRQRGLDVTARTVDS 236 ++ V GVPG GK+ I++ + + DLV KE + I+ N R RTVDS Sbjct 818 LVLVDGVPGCGKTKEILEKVNFSEDLVLVPGKEASKMIIRRANQAGITRADKDNVRTVDS 877 Query 237 ILLNGCKKGVENLYVDEAFACHSGTLLALIALVRPSGKVVLCGDPKQCGFFNLMQ---LK 293 L++ K+ + L++DE H+G + L+ L V D +Q F + Sbjct 878 FLMHPPKRVFKRLFIDEGLMLHTGCVNFLMLLSHCDVAYVYV-DTQQIPFICRVANFPYP 936 Query 294 VHYNHNICTRVLHKSISRRCTLPVTAIVSTLHYQGKMRTTNRCNTPIQIDTTGS------ 347 H+ + + ++ RC VT ++ Y G + T+ + + Sbjct 937 AHFAKLVVDEKEDRRVTLRCPADVTYFLNQ-KYDGSVLCTSSVERSVSAEVVRGKGALNP 995 Query 348 -SKPASGDIVLTCFRGWVKQLQIDYRGHEVMTAAASQGLTRKGVYAVRQKVNENPLYSPL 406 + P G I+ F K +D +V T QG T + VR + S Sbjct 996 ITLPLEGKIL--TFTQADKFELLDKGYKDVNTVHEVQGETYEKTAIVRLTATPLEIISRA 1053 Query 407 SEHVNVLLTRTENRLVWKTLSGDPWIKVLTNVPRGDFSATLEEWHEEHDG 456 S HV V LTR R + T+ DP + V++ + G S L E ++ G Sbjct 1054 SPHVLVALTRHTTRCKYYTVVLDPMVNVISEL--GKLSNFLLEMYKVESG 1101 >RecName: Full=Replicase large subunit; AltName: Full=RNA-directed RNA polymerase; Contains: RecName: Full=Replicase small subunit; AltName: Full=Methyltransferase/RNA helicase [Peanut clump virus 87/TGTA2] Sequence ID: Q84687.2 Length: 1672 Range 1: 856 to 1118 Score:55.5 bits(132), Expect:2e-06, Method:Compositional matrix adjust., Identities:68/269(25%), Positives:111/269(41%), Gaps:31/269(11%) Query 186 GVPGSGKSA-IIKNMVTTRDLV-ASGKKENCQEIMNDVKR---QRGL-----DVTARTVD 235 GVPG GKS I+ N R +V A G+ E +D++R ++G + RTV Sbjct 856 GVPGCGKSTWILSNCDLDRQIVLAEGR-----EATDDLRRRFTEKGFPKKRCEERVRTVH 910 Query 236 SILLNGCKKGVENLYVDEAFACHSGTLLALIALVRPSGKVVLCGDPKQCGFFN-LMQLKV 294 S +L + + + DEA H+G ++ + + + +V+ GD KQ F N + Q+ + Sbjct 911 SFMLKPLSRRFNSFHFDEALMAHAG-MIYICGRMLNAREVICQGDSKQIPFINRVEQISL 969 Query 295 HYNHNICTRVLHKSISRRCTLPVTAIVSTLHYQGKMRTTNRCNTPIQIDTTGSS------ 348 Y+ H + RC L + ++ Y T +DT S Sbjct 970 KYSSFNVVEREHVRKTYRCPLDIVYYLNKKKYYRGDDIVGYSKTTHSVDTKSKSSGFTSL 1029 Query 349 -----KPASGDIVLTCFRGWVKQLQIDYRGHEVMTAAASQGLTRKGVYAVRQKVNENPLY 403 +P L + V + +G V T +QG T + V VR K+ +N LY Sbjct 1030 VKLPKEPVHYLTFLQAEKEEVSKHLAGVKGATVSTVHEAQGKTFERVNLVRLKMTDNELY 1089 Query 404 ---SPLSEHVNVLLTRTENRLVWKTLSGD 429 + + V LTR LV+ ++ D Sbjct 1090 PGGAKSEPYTIVGLTRHTRSLVYYSVVED 1118 >RecName: Full=Replicase polyprotein 1ab; Contains: RecName: Full=Leader protease; Short=L-Pro; AltName: Full=Papain-like cysteine proteinase; Short=PCP; Contains: RecName: Full=Methyltransferase/helicase/RNA-directed RNA polymerase [Beet yellows virus isolate Ukraine] Sequence ID: Q08534.2 Length: 3094 Range 1: 2251 to 2520 Score:55.5 bits(132), Expect:2e-06, Method:Compositional matrix adjust., Identities:72/274(26%), Positives:114/274(41%), Gaps:37/274(13%) Query 188 PGSGKSA-IIKNMVTT----RDLVASGKKENCQEIMNDVKR------QRGLDVTAR--TV 234 PG GK+ +IK T L+ + K + +EI+ V R L R T+ Sbjct 2251 PGGGKTTTLIKVFCETFSKVNSLILTANKSSREEILAKVNRIVLDEGDTPLQTRDRILTI 2310 Query 235 DSILLNGCKKGVENLYVDEAFACHSGTLLALIALVRPSGKVVLCGDPKQCGFFNLMQLKV 294 DS L+N + LY+DE F H+G +A I + +L GD +Q + +L Sbjct 2311 DSYLMNNRGLTCKVLYLDECFMVHAGAAVACIEFTK-CDSAILFGDSRQIRYGRCSELDT 2369 Query 295 HYNHNICTRV-----LHKSISRRCTLPVTAIVSTLHYQGKMRTTNRCN---TPIQ---ID 343 ++ V ++ +S RC V A +ST Y + TTN + + +Q I+ Sbjct 2370 AVLSDLNRFVDDESRVYGEVSYRCPWDVCAWLSTF-YPKTVATTNLVSAGQSSMQVREIE 2428 Query 344 TTGSSKPASGDIVLTCFRGWVKQLQIDYRGHE--------VMTAAASQGLTRKGVYAVRQ 395 + + +S + LT + K L + V+T +QG T + V VR Sbjct 2429 SVDDVEYSSEFVYLTMLQSEKKDLLKSFGKRSRSSVEKPTVLTVHEAQGETYRKVNLVRT 2488 Query 396 KVNE-NPLYSPLSEHVNVLLTRTENRLVWKTLSG 428 K E +P S H+ V L+R L + LS Sbjct 2489 KFQEDDPFRS--ENHITVALSRHVESLTYSVLSS 2520 >RecName: Full=Methyltransferase/helicase/RNA-directed RNA polymerase [Raspberry bushy dwarf virus isolate R15] Sequence ID: Q05983.1 Length: 1694 Range 1: 853 to 1113 Score:55.1 bits(131), Expect:2e-06, Method:Compositional matrix adjust., Identities:77/274(28%), Positives:114/274(41%), Gaps:41/274(14%) Query 180 TIIGVFGVPGSGKSAIIKNMVTTRDLVASGKKENCQEIMNDVKRQRGLDVT-ARTVDSIL 238 TI V GV G GK+ I L+ S K N EI ++ +D RTVDS L Sbjct 853 TIKLVDGVTGCGKTTEIVRRYRPGILILSVCKANVDEIR---RKLAAVDSKFIRTVDSYL 909 Query 239 LNGCKKG-VENLYVDEAFACHSGTLLALIALVRPSG--KVVLCGDPKQCGFFN-LMQLKV 294 L+ G + L++DE H G LL I + SG KV L GD +Q F N L + Sbjct 910 LSPSVTGSCDELFIDEYGLSHPGILLLAIHI---SGIRKVTLFGDSEQIPFCNRLADFPL 966 Query 295 HYNH------NICTRVLHKSISRRCTLPVTAIVSTLHYQGKMRTTNRCNTPIQIDTTGSS 348 YN N + +S + RC +T + ++ ++T + + I I S Sbjct 967 KYNSVEDVGLNFDREI--RSTTYRCPQDITLSLQKMYKTKPIKTVSTVESSITIKPIKSE 1024 Query 349 ------KPASGDIVLTCFRG---------WVKQLQIDYRGHEVMTAAASQGLTRKGVYAV 393 G ++ C W K+ EV T A+QGL+ K V Sbjct 1025 FEIPLPNAFDGPVLYICMTKHDESLLKLRWAKE----NISSEVRTVHAAQGLSYKNVVYF 1080 Query 394 RQKVNENPLYS--PLSEHVNVLLTRTENRLVWKT 425 R +N LY+ L H+ V ++R +++V+ T Sbjct 1081 RLTRTDNDLYTKRKLPYHL-VAISRHTDKIVYCT 1113 >RecName: Full=Replicase large subunit; AltName: Full=183 kDa protein; AltName: Full=RNA-directed RNA polymerase; Contains: RecName: Full=Replicase small subunit; AltName: Full=126 kDa protein; AltName: Full=Methyltransferase/RNA helicase; Short=MT/HEL [Tomato mosaic virus (strain S-1)] Sequence ID: Q9YKD6.1 Length: 1616 Range 1: 828 to 1100 Score:55.1 bits(131), Expect:3e-06, Method:Compositional matrix adjust., Identities:67/276(24%), Positives:114/276(41%), Gaps:19/276(6%) Query 181 IIGVFGVPGSGKSAIIKNMVTTRDLVASGKKENCQEIMNDVKRQRGLDVTA----RTVDS 236 ++ V GVPG GK+ I + V + + E++ G+ V RTVDS Sbjct 828 VVLVDGVPGCGKTKEILSRVNFEEDLILVPGRQAAEMIRRRANASGIIVATKDNVRTVDS 887 Query 237 ILLN---GCKKGVENLYVDEAFACHSGTLLALIALVRPSGKVVLCGDPKQCGFFNLMQ-- 291 L+N G + + L++DE H+G + L+ + S + GD +Q + N + Sbjct 888 FLMNYGKGARCQFKRLFIDEGLMLHTGCVNFLVEM-SLSDIAYVYGDTQQIPYINRVTGF 946 Query 292 -LKVHYNHNICTRVLHKSISRRCTLPVTAIVSTLHYQGKMRTTNRCNTPIQIDTTGS--- 347 H+ V + + RC VT ++ + M T++ + Q +G+ Sbjct 947 PYPAHFAKLEVDEVETRRTTLRCPADVTHFLNQRYEGHVMCTSSEKKSVSQEMVSGAASI 1006 Query 348 ---SKPASGDIVLTCFRGWVKQLQIDYRGHEVMTAAASQGLTRKGVYAVRQKVNENPLYS 404 SKP G I+ F K+ + +V T QG T V VR + + Sbjct 1007 NPVSKPLKGKIL--TFTQSDKEALLSRGYTDVHTVHEVQGETYADVSLVRLTPTPVSIIA 1064 Query 405 PLSEHVNVLLTRTENRLVWKTLSGDPWIKVLTNVPR 440 S HV V L+R L + T+ DP + ++ ++ R Sbjct 1065 RDSPHVLVSLSRHTKSLKYYTVVMDPLVSIIRDLER 1100 >RecName: Full=Replicase large subunit; AltName: Full=183 kDa protein; AltName: Full=RNA-directed RNA polymerase; Contains: RecName: Full=Replicase small subunit; AltName: Full=126 kDa protein; AltName: Full=Methyltransferase/RNA helicase; Short=MT/HEL [Tomato mosaic virus (strain Kazakh K2)] Sequence ID: P89676.1 Length: 1616 Range 1: 828 to 1100 Score:53.5 bits(127), Expect:7e-06, Method:Compositional matrix adjust., Identities:67/276(24%), Positives:113/276(40%), Gaps:19/276(6%) Query 181 IIGVFGVPGSGKSAIIKNMVTTRDLVASGKKENCQEIMNDVKRQRGLDVTA----RTVDS 236 ++ V GVPG GK+ I + V + + E++ G+ V RTVDS Sbjct 828 VVLVDGVPGCGKTKEILSRVNFEEDLILVPGRQAAEMIRRRANASGIIVATKDNVRTVDS 887 Query 237 ILLN---GCKKGVENLYVDEAFACHSGTLLALIALVRPSGKVVLCGDPKQCGFFNLMQ-- 291 L+N G + + L++DE H+G + L+ + V GD +Q + N + Sbjct 888 FLMNYGKGARCQFKRLFIDEGLMLHTGCVNFLVEMSLCDIAYVY-GDTQQIPYINRVTGF 946 Query 292 -LKVHYNHNICTRVLHKSISRRCTLPVTAIVSTLHYQGKMRTTNRCNTPIQIDTTGS--- 347 H+ V + + RC VT ++ + M T++ + Q +G+ Sbjct 947 PYPAHFAKLEVDEVETRRTTLRCPADVTHFLNQRYEGHVMCTSSEKKSVSQEMVSGAASI 1006 Query 348 ---SKPASGDIVLTCFRGWVKQLQIDYRGHEVMTAAASQGLTRKGVYAVRQKVNENPLYS 404 SKP G I+ F K+ + +V T QG T V VR + + Sbjct 1007 NPVSKPLKGKIL--TFTQSDKEALLSRGYADVHTVHEVQGETYADVSLVRLTPTPVSIIA 1064 Query 405 PLSEHVNVLLTRTENRLVWKTLSGDPWIKVLTNVPR 440 S HV V L+R L + T+ DP + ++ ++ R Sbjct 1065 RDSPHVLVSLSRHTKSLKYYTVVMDPLVSIIRDLER 1100 >RecName: Full=Replicase large subunit; AltName: Full=183 kDa protein; AltName: Full=RNA-directed RNA polymerase; Contains: RecName: Full=Replicase small subunit; AltName: Full=126 kDa protein; AltName: Full=Methyltransferase/RNA helicase; Short=MT/HEL [Tobacco mosaic virus strain tomato/L] Sequence ID: P03587.2 Length: 1616 Range 1: 828 to 1100 Score:53.5 bits(127), Expect:7e-06, Method:Compositional matrix adjust., Identities:67/276(24%), Positives:113/276(40%), Gaps:19/276(6%) Query 181 IIGVFGVPGSGKSAIIKNMVTTRDLVASGKKENCQEIMNDVKRQRGLDVTA----RTVDS 236 ++ V GVPG GK+ I + V + + E++ G+ V RTVDS Sbjct 828 VVLVDGVPGCGKTKEILSRVNFEEDLILVPGRQAAEMIRRRANASGIIVATKDNVRTVDS 887 Query 237 ILLN---GCKKGVENLYVDEAFACHSGTLLALIALVRPSGKVVLCGDPKQCGFFNLMQ-- 291 L+N G + + L++DE H+G + L+ + V GD +Q + N + Sbjct 888 FLMNYGKGARCQFKRLFIDEGLMLHTGCVNFLVEMSLCDIAYVY-GDTQQIPYINRVTGF 946 Query 292 -LKVHYNHNICTRVLHKSISRRCTLPVTAIVSTLHYQGKMRTTNRCNTPIQIDTTGS--- 347 H+ V + + RC VT ++ + M T++ + Q +G+ Sbjct 947 PYPAHFAKLEVDEVETRRTTLRCPADVTHFLNQRYEGHVMCTSSEKKSVSQEMVSGAASI 1006 Query 348 ---SKPASGDIVLTCFRGWVKQLQIDYRGHEVMTAAASQGLTRKGVYAVRQKVNENPLYS 404 SKP G I+ F K+ + +V T QG T V VR + + Sbjct 1007 NPVSKPLKGKIL--TFTQSDKEALLSRGYADVHTVHEVQGETYADVSLVRLTPTPVSIIA 1064 Query 405 PLSEHVNVLLTRTENRLVWKTLSGDPWIKVLTNVPR 440 S HV V L+R L + T+ DP + ++ ++ R Sbjct 1065 RDSPHVLVSLSRHTKSLKYYTVVMDPLVSIIRDLER 1100 >RecName: Full=Replicase large subunit; AltName: Full=183 kDa protein; AltName: Full=RNA-directed RNA polymerase; Contains: RecName: Full=Replicase small subunit; AltName: Full=126 kDa protein; AltName: Full=Methyltransferase/RNA helicase; Short=MT/HEL [Tomato mosaic virus (strain Kazakh K1)] Sequence ID: Q9Q1T8.2 Length: 1616 Range 1: 828 to 1100 Score:53.5 bits(127), Expect:8e-06, Method:Compositional matrix adjust., Identities:67/276(24%), Positives:113/276(40%), Gaps:19/276(6%) Query 181 IIGVFGVPGSGKSAIIKNMVTTRDLVASGKKENCQEIMNDVKRQRGLDVTA----RTVDS 236 ++ V GVPG GK+ I + V + + E++ G+ V RTVDS Sbjct 828 VVLVDGVPGCGKTKEILSRVNFEEDLILVPGRQAAEMIRRRANASGIIVATKDNVRTVDS 887 Query 237 ILLN---GCKKGVENLYVDEAFACHSGTLLALIALVRPSGKVVLCGDPKQCGFFNLMQ-- 291 L+N G + + L++DE H+G + L+ + V GD +Q + N + Sbjct 888 FLMNYGKGARCQFKRLFIDEGLMLHTGCVNFLVEMSLCDIAYVY-GDTQQIPYINRVTGF 946 Query 292 -LKVHYNHNICTRVLHKSISRRCTLPVTAIVSTLHYQGKMRTTNRCNTPIQIDTTGS--- 347 H+ V + + RC VT ++ + M T++ + Q +G+ Sbjct 947 PYPAHFAKLEVDEVETRRTTLRCPADVTHFLNQRYEGHVMCTSSEKKSVSQEMVSGAASI 1006 Query 348 ---SKPASGDIVLTCFRGWVKQLQIDYRGHEVMTAAASQGLTRKGVYAVRQKVNENPLYS 404 SKP G I+ F K+ + +V T QG T V VR + + Sbjct 1007 NPVSKPLKGKIL--TFTQSDKEALLSRGYADVHTVHEVQGETYADVSLVRLTPTPVSIIA 1064 Query 405 PLSEHVNVLLTRTENRLVWKTLSGDPWIKVLTNVPR 440 S HV V L+R L + T+ DP + ++ ++ R Sbjct 1065 RDSPHVLVSLSRHTKSLKYYTVVMDPLVSIIRDLER 1100 >RecName: Full=Replicase large subunit; AltName: Full=183 kDa protein; AltName: Full=RNA-directed RNA polymerase; Contains: RecName: Full=Replicase small subunit; AltName: Full=126 kDa protein; AltName: Full=Methyltransferase/RNA helicase; Short=MT/HEL [Tomato brown rugose fruit virus Tom1-Jo] Sequence ID: A0A0S2T050.1 Length: 1615 Range 1: 828 to 1100 Score:52.4 bits(124), Expect:2e-05, Method:Compositional matrix adjust., Identities:64/277(23%), Positives:114/277(41%), Gaps:21/277(7%) Query 181 IIGVFGVPGSGKSAIIKNMVT-TRDLVASGKKENCQEIMNDVKRQRGLDVT---ARTVDS 236 ++ V GVPG GK+ I + V DL+ K+ + I + T RTVDS Sbjct 828 VVLVDGVPGCGKTKEILSKVNFEEDLILVPGKQAAEMIKRRANASGIIQATRDNVRTVDS 887 Query 237 ILLN---GCKKGVENLYVDEAFACHSGTLLALIALVRPSGKVVLCGDPKQCGFFNLMQ-- 291 ++N G + + L++DE H+G + L+++ V GD +Q + N + Sbjct 888 FIMNYGKGTRCQFKRLFIDEGLMLHTGCVNFLVSMSLCEIAYVY-GDTQQIPYINRVSGF 946 Query 292 -LKVHYNHNICTRVLHKSISRRCTLPVTAIVSTLHYQGKMRTTNRCNTPIQIDTTGS--- 347 H+ V + + RC +T ++ Y+G + T+ + + Sbjct 947 PYPAHFAKIEVDEVETRRTTLRCPADITHYLNR-RYEGYVMCTSSVKKSVSQEMVSGAAM 1005 Query 348 ----SKPASGDIVLTCFRGWVKQLQIDYRGHEVMTAAASQGLTRKGVYAVRQKVNENPLY 403 SKP +G ++ F K+ + +V T QG T V VR + Sbjct 1006 INPVSKPLNGKVL--TFTQSDKEALLSRGYTDVHTVHEVQGETYADVSLVRLTPTPVSII 1063 Query 404 SPLSEHVNVLLTRTENRLVWKTLSGDPWIKVLTNVPR 440 + S HV V L+R L + T+ DP + ++ ++ + Sbjct 1064 AGDSPHVLVALSRHTQTLKYYTVVMDPLVSIIRDLEK 1100 >RecName: Full=Replicase large subunit; AltName: Full=194 kDa protein; AltName: Full=RNA-directed RNA polymerase; Contains: RecName: Full=Replicase small subunit; AltName: Full=134 kDa protein; AltName: Full=Methyltransferase/RNA helicase [Tobacco rattle virus PpK20] Sequence ID: Q9J942.2 Length: 1707 Range 1: 893 to 1160 Score:50.8 bits(120), Expect:5e-05, Method:Compositional matrix adjust., Identities:69/272(25%), Positives:120/272(44%), Gaps:21/272(7%) Query 175 APYHTTIIGVFGVPGSGKSAIIKNMVT-TRDLVASGKKENCQEIMNDVKRQR---GLDVT 230 P + + V GVPG GKS +I N D+V S + +++ + L Sbjct 893 GPVNCSFELVDGVPGCGKSTMIVNSANPCVDVVLSTGRAATDDLIERFASKGFPCKLKRR 952 Query 231 ARTVDSILLNGCKKGV---ENLYVDEAFACHSGTLLALIALVRPSGKVVLCGDPKQCGFF 287 +TVDS L++ C G + L+ DEA H+G ++ A + + + + GD Q F Sbjct 953 VKTVDSFLMH-CVDGSLTGDVLHFDEALMAHAG-MVYFCAQIAGAKRCICQGDQNQISFK 1010 Query 288 -NLMQLKVHYNHNI--CTRVLHKSISRRCTLPVTAIVSTLHYQGKMRTTNRCNTPIQIDT 344 + Q+ + ++ + V K + R V A+++ +Y G +RT N + + Sbjct 1011 PRVSQVDLRFSSLVGKFDIVTEKRETYRSPADVAAVLNK-YYTGDVRTHNATANSMTVRK 1069 Query 345 TGSSKPAS---GDIVLTCFRGWVKQ----LQIDYRGHEVMTAAASQGLTRKGVYAVRQKV 397 S + S G +T + K+ L + +V T SQG T K V VR K Sbjct 1070 IVSKEQVSLKPGAQYITFLQSEKKELVNLLALRKVAAKVSTVHESQGETFKDVVLVRTKP 1129 Query 398 NENPLYSPLSEHVNVLLTRTENRLVWKTLSGD 429 ++ + + E++ V L+R LV++T+ D Sbjct 1130 TDDSI-ARGREYLIVALSRHTQSLVYETVKED 1160 >RecName: Full=Replicase large subunit; AltName: Full=194 kDa protein; AltName: Full=RNA-directed RNA polymerase; Contains: RecName: Full=Replicase small subunit; AltName: Full=134 kDa protein; AltName: Full=Methyltransferase/RNA helicase [Tobacco rattle virus-SYM] Sequence ID: P05080.2 Length: 1707 Range 1: 893 to 1160 Score:50.8 bits(120), Expect:5e-05, Method:Compositional matrix adjust., Identities:69/272(25%), Positives:120/272(44%), Gaps:21/272(7%) Query 175 APYHTTIIGVFGVPGSGKSAIIKNMVT-TRDLVASGKKENCQEIMNDVKRQR---GLDVT 230 P + + V GVPG GKS +I N D+V S + +++ + L Sbjct 893 GPVNCSFELVDGVPGCGKSTMIVNSANPCVDVVLSTGRAATDDLIERFASKGFPCKLKRR 952 Query 231 ARTVDSILLNGCKKGV---ENLYVDEAFACHSGTLLALIALVRPSGKVVLCGDPKQCGFF 287 +TVDS L++ C G + L+ DEA H+G ++ A + + + + GD Q F Sbjct 953 VKTVDSFLMH-CVDGSLTGDVLHFDEALMAHAG-MVYFCAQIAGAKRCICQGDQNQISFK 1010 Query 288 -NLMQLKVHYNHNI--CTRVLHKSISRRCTLPVTAIVSTLHYQGKMRTTNRCNTPIQIDT 344 + Q+ + ++ + V K + R V A+++ +Y G +RT N + + Sbjct 1011 PRVSQVDLRFSSLVGKFDIVTEKRETYRSPADVAAVLNK-YYTGDVRTHNATANSMTVRK 1069 Query 345 TGSSKPAS---GDIVLTCFRGWVKQ----LQIDYRGHEVMTAAASQGLTRKGVYAVRQKV 397 S + S G +T + K+ L + +V T SQG T K V VR K Sbjct 1070 IVSKEQVSLKPGAQYITFLQSEKKELVNLLALRKVAAKVSTVHESQGETFKDVVLVRTKP 1129 Query 398 NENPLYSPLSEHVNVLLTRTENRLVWKTLSGD 429 ++ + + E++ V L+R LV++T+ D Sbjct 1130 TDDSI-ARGREYLIVALSRHTQSLVYETVKED 1160 >RecName: Full=Replication protein 1a; Includes: RecName: Full=ATP-dependent helicase; Includes: RecName: Full=Methyltransferase [Olive latent virus 2 isolate Italy] Sequence ID: Q83943.1 Length: 908 Range 1: 631 to 864 Score:50.1 bits(118), Expect:7e-05, Method:Compositional matrix adjust., Identities:60/237(25%), Positives:106/237(44%), Gaps:22/237(9%) Query 186 GVPGSGKSAII---KNMVTTRDLVASGKKENCQEIMNDVKRQRGLDVTARTVDSILLNGC 242 GV G GK+ I ++ DL+ + K++ ++I + +K RTVDS LL Sbjct 631 GVAGCGKTYEIVHTADIFKKDDLILTANKKSQEDIFSQLKPGTDCAKRIRTVDSYLLKPD 690 Query 243 KKGVENLYVDEAFACHSGTLLALIALVRPSGKVVLCGDPKQCGFFNL---MQLKVHYNHN 299 + + L++DEA H G LLA + +L GD +Q F N+ +Q Sbjct 691 VQA-KRLFIDEAGLVHPGKLLAAMRFAE-CDDCLLFGDSEQIPFVNIVESLQPAKFLKLE 748 Query 300 ICTRVLHKSISRRCTLPVTAIVSTLHYQGKMRTTNRCNTPIQIDTTGSSKPASG----DI 355 + R + ++ + RC VTA ++TL+ + K+ T ++ + + S+ SG Sbjct 749 VDAREVRET-TYRCPADVTATLATLYKKKKIVTKSKVLKSVTSKSLASASAVSGLDPHSW 807 Query 356 VLTCFRGWVKQL-------QID--YRGHEVMTAAASQGLTRKGVYAVRQKVNENPLY 403 LT ++ +L Q+D + + T +QG++ V R K + PL+ Sbjct 808 HLTMYQADKAELVRVARTNQMDDVWIKEHIKTVHEAQGISVPHVKLYRFKTFDQPLF 864 >RecName: Full=Replication protein 1a; Includes: RecName: Full=ATP-dependent helicase; Includes: RecName: Full=Methyltransferase [Pelargonium zonate spot virus isolate tomato] Sequence ID: Q9DUT3.1 Length: 962 Range 1: 683 to 810 Score:50.1 bits(118), Expect:8e-05, Method:Compositional matrix adjust., Identities:38/134(28%), Positives:64/134(47%), Gaps:17/134(12%) Query 173 PAAPYHTTIIGVFGVPGSGKSAIIKN-MVTTRDLVASGKKENCQEIMN-------DVKRQ 224 PA P I + GV G GK+ IK V DL+ + K++ ++I+ D+ R Sbjct 683 PAQPPKGNINLMDGVAGCGKTTAIKRAFVFESDLIVTANKKSSEDILKAMFRDTPDIGRN 742 Query 225 RGLDVTARTVDSILLNGCKKGVENLYVDEAFACHSGTLLALIALVRPSGKVVLCGDPKQC 284 + RT DS+L++G V+ + DE H G L A++ + + +++ GD +Q Sbjct 743 K-----VRTADSVLMHGVAHKVKRVLFDEVSLVHFGQLCAILT-ISGAEELIGFGDSEQI 796 Query 285 GFFN---LMQLKVH 295 F + L +K H Sbjct 797 SFVSRDRLFDMKYH 810 >RecName: Full=Replication protein 1a; Includes: RecName: Full=ATP-dependent helicase; Includes: RecName: Full=Methyltransferase [Brome mosaic virus] Sequence ID: P03588.1 Length: 961 Range 1: 683 to 836 Score:50.1 bits(118), Expect:8e-05, Method:Compositional matrix adjust., Identities:49/162(30%), Positives:76/162(46%), Gaps:20/162(12%) Query 184 VFGVPGSGKSAIIKNMVTT-RDLVASGKKENCQEIM-----NDVKRQRGLDVTARTVDSI 237 V GV G GK+ IK+ DL+ + +++ +++ + + LDV RT DS Sbjct 683 VDGVAGCGKTTAIKDAFRMGEDLIVTANRKSAEDVRMALFPDTYNSKVALDVV-RTADSA 741 Query 238 LLNGCKKGVENLYVDEAFACHSGTLLALIALVRPSGKVVLCGDPKQCGF------FNLMQ 291 +++G L VDEA H G LL + AL + S +V+ GD +Q F F L+ Sbjct 742 IMHGVP-SCHRLLVDEAGLLHYGQLLVVAALSKCS-QVLAFGDTEQISFKSRDAGFKLLH 799 Query 292 LKVHYNHNICTRVLHKSISRRCTLPVTAIVSTLHYQGKMRTT 333 + Y+ V+HK+ RC V A V+ L + R T Sbjct 800 GNLQYDRR---DVVHKTY--RCPQDVIAAVNLLKRKCGNRDT 836 >RecName: Full=Replicase polyprotein 1ab; Contains: RecName: Full=Leader protease; Short=L-Pro; AltName: Full=Papain-like cysteine proteinase; Short=PCP; Contains: RecName: Full=Methyltransferase/helicase/RNA-directed RNA polymerase [Grapevine leafroll-associated virus 3 isolate NY1] Sequence ID: O71189.3 Length: 2772 Range 1: 1921 to 2212 Score:49.7 bits(117), Expect:1e-04, Method:Compositional matrix adjust., Identities:74/304(24%), Positives:125/304(41%), Gaps:33/304(10%) Query 156 LINPPFHEFAYEGLKIRPAAPYHTTIIGVFGVPGSGKSAIIKNMVTTRDLVASGKKENCQ 215 ++ F F Y+ P TT++ F + + I N+ ++ D+ + KK + Sbjct 1921 MVGESFKSFEYKCYNAPPGGGKTTTLVDEFVKSPNSTATITANVGSSEDINMAVKKRD-- 1978 Query 216 EIMNDVKRQRGLDVTARTVDSILLNGCKKGV-ENLYVDEAFACHSGTLLALIALVRPSGK 274 GL+ +A TV+S ++N +G+ + + VDE H G LL L + + Sbjct 1979 ------PNLEGLN-SATTVNSRVVNFIVRGMYKRVLVDEVHMMHQG-LLQLGVFATGASE 2030 Query 275 VVLCGDPKQCGFFN---LMQLKVHYNHNICTRVLHKSISRRCTLPVTAIVSTLHYQ---- 327 + GD Q F N + ++ V++ S S RC L V ++S++ + Sbjct 2031 GLFFGDINQIPFINREKVFRMDCAVFVPKKESVVYTSKSYRCPLDVCYLLSSMTVRGTEK 2090 Query 328 --------GKMRTTNRCNTPIQIDTTGSSKPASGDIVLTCFRGWVK---QLQIDYRGHE- 375 GK + R + I TT + D+ L C K + + +G E Sbjct 2091 CYPEKVVSGKDKPVVRSLSKRPIGTTDDVAEINADVYL-CMTQLEKSDMKRSLKGKGKET 2149 Query 376 -VMTAAASQGLTRKGVYAVRQKVNENPLYSPLSEHVNVLLTRTENRLVWKTLSGDPWIKV 434 VMT +QG T V R K ++ L++ H+ V L+R LV+ LS KV Sbjct 2150 PVMTVHEAQGKTFSDVVLFRTKKADDSLFTK-QPHILVGLSRHTRSLVYAALSSKLDDKV 2208 Query 435 LTNV 438 T + Sbjct 2209 GTYI 2212 >RecName: Full=Replication protein 1a; Includes: RecName: Full=ATP-dependent helicase; Includes: RecName: Full=Methyltransferase [Cucumber mosaic virus (strain O)] Sequence ID: P20122.1 Length: 993 Range 1: 708 to 816 Score:49.3 bits(116), Expect:1e-04, Method:Compositional matrix adjust., Identities:36/111(32%), Positives:59/111(53%), Gaps:6/111(5%) Query 180 TIIGVFGVPGSGKSAIIKNMVT-TRDLVASGKKENCQEI-MNDVKRQRGLDVTA--RTVD 235 TI V GV G GK+ IK++ + D++ + K++ Q++ M K + A RT D Sbjct 708 TISQVDGVAGCGKTTAIKSIFEPSTDMIVTANKKSAQDVRMALFKSSDSKEACAFVRTAD 767 Query 236 SILLNGCKKGVENLYVDEAFACHSGTLLALIALVRPSGKVVLCGDPKQCGF 286 S+LLN C V + VDE H G L A+++ ++ + + + GD +Q F Sbjct 768 SVLLNECPT-VSRVLVDEVVLLHFGQLCAVMSKLK-AVRAICFGDSEQIAF 816 >RecName: Full=Replicase protein 1a; Contains: RecName: Full=Leader protease; Short=L-Pro; AltName: Full=Papain-like cysteine proteinase; Short=PCP; Contains: RecName: Full=Methyltransferase/helicase [Grapevine leafroll-associated virus 3 isolate NY1] Sequence ID: O71188.2 Length: 2233 Range 1: 1921 to 2201 Score:49.3 bits(116), Expect:2e-04, Method:Compositional matrix adjust., Identities:71/293(24%), Positives:121/293(41%), Gaps:33/293(11%) Query 156 LINPPFHEFAYEGLKIRPAAPYHTTIIGVFGVPGSGKSAIIKNMVTTRDLVASGKKENCQ 215 ++ F F Y+ P TT++ F + + I N+ ++ D+ + KK + Sbjct 1921 MVGESFKSFEYKCYNAPPGGGKTTTLVDEFVKSPNSTATITANVGSSEDINMAVKKRD-- 1978 Query 216 EIMNDVKRQRGLDVTARTVDSILLNGCKKGV-ENLYVDEAFACHSGTLLALIALVRPSGK 274 GL+ +A TV+S ++N +G+ + + VDE H G LL L + + Sbjct 1979 ------PNLEGLN-SATTVNSRVVNFIVRGMYKRVLVDEVHMMHQG-LLQLGVFATGASE 2030 Query 275 VVLCGDPKQCGFFN---LMQLKVHYNHNICTRVLHKSISRRCTLPVTAIVSTLHYQ---- 327 + GD Q F N + ++ V++ S S RC L V ++S++ + Sbjct 2031 GLFFGDINQIPFINREKVFRMDCAVFVPKKESVVYTSKSYRCPLDVCYLLSSMTVRGTEK 2090 Query 328 --------GKMRTTNRCNTPIQIDTTGSSKPASGDIVLTCFRGWVK---QLQIDYRGHE- 375 GK + R + I TT + D+ L C K + + +G E Sbjct 2091 CYPEKVVSGKDKPVVRSLSKRPIGTTDDVAEINADVYL-CMTQLEKSDMKRSLKGKGKET 2149 Query 376 -VMTAAASQGLTRKGVYAVRQKVNENPLYSPLSEHVNVLLTRTENRLVWKTLS 427 VMT +QG T V R K ++ L++ H+ V L+R LV+ LS Sbjct 2150 PVMTVHEAQGKTFSDVVLFRTKKADDSLFTK-QPHILVGLSRHTRSLVYAALS 2201 >RecName: Full=Replicase large subunit; AltName: Full=183 kDa protein; AltName: Full=RNA-directed RNA polymerase; Contains: RecName: Full=Replicase small subunit; AltName: Full=126 kDa protein; AltName: Full=Methyltransferase/RNA helicase; Short=MT/HEL [Tobacco mosaic virus strain Rakkyo] Sequence ID: Q98745.1 Length: 1616 Range 1: 828 to 1120 Score:48.9 bits(115), Expect:2e-04, Method:Compositional matrix adjust., Identities:74/299(25%), Positives:126/299(42%), Gaps:23/299(7%) Query 181 IIGVFGVPGSGKSAIIKNMVT-TRDLVASGKKENCQEIMNDVKRQRGLDVTA----RTVD 235 ++ V GVPG GK+ I + V DL+ K+ E++ G+ V RTVD Sbjct 828 VVLVDGVPGCGKTKEILSRVNFDEDLILVPGKQ-AAEMIRRRANSSGIIVATKDNVRTVD 886 Query 236 SILLNGCKKG---VENLYVDEAFACHSGTLLALIALVRPSGKVVLCGDPKQCGFFNLMQ- 291 S ++N K + L++DE H+G + L+A+ V GD +Q + N + Sbjct 887 SFMMNFGKTTRCQFKRLFIDEGLMLHTGCVNFLVAMSLCDVAYVY-GDTQQIPYINRVSG 945 Query 292 --LKVHYNHNICTRVLHKSISRRCTLPVTAIVSTLHYQGKMRTTNRCNTPIQIDTTGS-- 347 H++ V + + RC VT ++ + + T++ + Q +G+ Sbjct 946 FPYPAHFSKLEVDEVETRRTTLRCPADVTHYLNRRYEGFVVSTSSVKKSVSQEMVSGAAV 1005 Query 348 ----SKPASGDIVLTCFRGWVKQLQIDYRGHEVMTAAASQGLTRKGVYAVRQKVNENPLY 403 SKP G I+ F K+ + EV T QG T V VR + Sbjct 1006 INPISKPLHGKIL--TFTQSDKEALLSRGYSEVHTVHEVQGETYSDVSLVRLTPTPISII 1063 Query 404 SPLSEHVNVLLTRTENRLVWKTLSGDPWIKVLTNVPRGDFSATLEEWHEEHDGIMRVLN 462 + S HV V L+R L + T+ DP + ++ ++ + S+ L + ++ GI L Sbjct 1064 AGDSPHVLVALSRHTCSLKYYTVVMDPLVSIIRDLEK--LSSYLLDMYKVDAGIQXQLQ 1120 >RecName: Full=Replication protein 1a; Includes: RecName: Full=ATP-dependent helicase; Includes: RecName: Full=Methyltransferase [Cucumber mosaic virus (strain Ixora)] Sequence ID: Q66121.1 Length: 993 Range 1: 708 to 816 Score:48.1 bits(113), Expect:3e-04, Method:Compositional matrix adjust., Identities:36/111(32%), Positives:58/111(52%), Gaps:6/111(5%) Query 180 TIIGVFGVPGSGKSAIIKNMVT-TRDLVASGKKENCQEI-MNDVKRQRGLDVTA--RTVD 235 TI V GV G GK+ IK++ + D+V + K++ Q++ M K + RT D Sbjct 708 TISQVDGVAGCGKTTAIKSIFEPSTDMVVTANKKSAQDVRMALFKSSDSKEACTFVRTAD 767 Query 236 SILLNGCKKGVENLYVDEAFACHSGTLLALIALVRPSGKVVLCGDPKQCGF 286 S+LLN C V + VDE H G L A+++ ++ + + + GD +Q F Sbjct 768 SVLLNECPT-VSRVLVDEVVLLHFGQLCAVMSKLK-AVRAICFGDSEQIAF 816 >RecName: Full=Replication protein 1a; Includes: RecName: Full=ATP-dependent helicase; Includes: RecName: Full=Methyltransferase [Cucumber mosaic virus (strain Q)] Sequence ID: P06011.1 Length: 991 Range 1: 662 to 815 Score:48.1 bits(113), Expect:3e-04, Method:Compositional matrix adjust., Identities:45/163(28%), Positives:74/163(45%), Gaps:17/163(10%) Query 132 YVFDVDKKACIKKEEASGLVLTGDLINPPFHE-FAYEGLKIRPAAPYHTTIIGVFGVPGS 190 Y ++K K ++ ++ GD + H+ F+ + P TI V GV G Sbjct 662 YSVGYNEKGLGPKLDSELYIVNGDCVISNSHDLFSITKSLLAPTG----TISQVDGVAGC 717 Query 191 GKSAIIKNMVT-TRDLVASGKKENCQEI------MNDVKRQRGLDVTARTVDSILLNGCK 243 GK+ IK+M + D++ + K++ Q++ D K RT DSILLN C Sbjct 718 GKTTAIKSMFNPSTDIIVTANKKSAQDVRYALFKSTDSKEACAF---VRTADSILLNDCP 774 Query 244 KGVENLYVDEAFACHSGTLLALIALVRPSGKVVLCGDPKQCGF 286 V + VDE H G L A+++ + + + + GD +Q F Sbjct 775 T-VSRVLVDEVVLLHFGQLCAVMSKLH-AVRALCFGDSEQIAF 815 >RecName: Full=Replication protein 1a; Includes: RecName: Full=ATP-dependent helicase; Includes: RecName: Full=Methyltransferase [Cucumber mosaic virus (strain NT9)] Sequence ID: O40976.1 Length: 993 Range 1: 708 to 816 Score:47.8 bits(112), Expect:4e-04, Method:Compositional matrix adjust., Identities:35/111(32%), Positives:58/111(52%), Gaps:6/111(5%) Query 180 TIIGVFGVPGSGKSAIIKNMVT-TRDLVASGKKENCQEI-MNDVKRQRGLDVTA--RTVD 235 TI V GV G GK+ IK++ + D++ + K++ Q++ M K + RT D Sbjct 708 TISQVDGVAGCGKTTAIKSIFEPSTDMIVTANKKSAQDVRMALFKSSDSKEACTFVRTAD 767 Query 236 SILLNGCKKGVENLYVDEAFACHSGTLLALIALVRPSGKVVLCGDPKQCGF 286 S+LLN C V + VDE H G L A+++ ++ + + + GD +Q F Sbjct 768 SVLLNECPT-VSRVLVDEVVLLHFGQLCAVMSKLK-AVRAICFGDSEQIAF 816 >RecName: Full=Replicase large subunit; AltName: Full=183 kDa protein; AltName: Full=RNA-directed RNA polymerase; Contains: RecName: Full=Replicase small subunit; AltName: Full=126 kDa protein; AltName: Full=Methyltransferase/RNA helicase; Short=MT/HEL [Tobacco mosaic virus strain B395A] Sequence ID: Q9YQ08.1 Length: 1616 Range 1: 828 to 1100 Score:47.8 bits(112), Expect:4e-04, Method:Compositional matrix adjust., Identities:68/278(24%), Positives:117/278(42%), Gaps:23/278(8%) Query 181 IIGVFGVPGSGKSAIIKNMVT-TRDLVASGKKENCQEIMNDVKRQRGLDVTAR----TVD 235 ++ V GVPG GK+ I + V DL+ K+ E++ G+ V + TVD Sbjct 828 VVLVDGVPGCGKTKEILSRVNFDEDLILVPGKQ-AAEMIRRRANSSGIIVATKDNVKTVD 886 Query 236 SILLNGCKKG---VENLYVDEAFACHSGTLLALIALVRPSGKVVLCGDPKQCGFFNLMQ- 291 S ++N K + L++DE H+G + L+A+ V GD +Q + N + Sbjct 887 SFMMNFGKSTRCQFKRLFIDEGLMLHTGCVNFLVAMSLCEIAYVY-GDTQQIPYINRVSG 945 Query 292 --LKVHYNHNICTRVLHKSISRRCTLPVTAIVSTLHYQGKMRTTNRCNTPIQIDTTGS-- 347 H+ V + + RC VT ++ Y+G + +T+ + + G Sbjct 946 FPYPAHFAKLEVDEVETRRTTLRCPADVTHYLNR-RYEGFVMSTSSVKKSVSQEMVGGAA 1004 Query 348 -----SKPASGDIVLTCFRGWVKQLQIDYRGHEVMTAAASQGLTRKGVYAVRQKVNENPL 402 SKP+ G I+ F K+ + +V T QG T V VR + Sbjct 1005 VINPISKPSHGKIL--TFTQSDKEALLSRGYSDVHTVHEVQGETYSDVSLVRLTPTPVSI 1062 Query 403 YSPLSEHVNVLLTRTENRLVWKTLSGDPWIKVLTNVPR 440 + S HV V L+R L + T+ DP + ++ ++ + Sbjct 1063 IAGDSPHVLVALSRHTCSLKYYTVVMDPLVSIIRDLEK 1100 >RecName: Full=Replication protein 1a; Includes: RecName: Full=ATP-dependent helicase; Includes: RecName: Full=Methyltransferase [Cucumber mosaic virus (strain Iizuka)] Sequence ID: Q83270.1 Length: 993 Range 1: 708 to 816 Score:47.8 bits(112), Expect:4e-04, Method:Compositional matrix adjust., Identities:35/111(32%), Positives:58/111(52%), Gaps:6/111(5%) Query 180 TIIGVFGVPGSGKSAIIKNMVT-TRDLVASGKKENCQEI-MNDVKRQRGLDVTA--RTVD 235 TI V GV G GK+ IK++ + D++ + K++ Q++ M K + RT D Sbjct 708 TISQVDGVAGCGKTTAIKSIFEPSTDMIVTANKKSAQDVRMALFKSSDSKEACTFVRTAD 767 Query 236 SILLNGCKKGVENLYVDEAFACHSGTLLALIALVRPSGKVVLCGDPKQCGF 286 S+LLN C V + VDE H G L A+++ ++ + + + GD +Q F Sbjct 768 SVLLNECPT-VSRVLVDEVVLLHFGQLCAVMSKLK-AVRAICFGDSEQIAF 816 >RecName: Full=Replication protein 1a; Includes: RecName: Full=ATP-dependent helicase; Includes: RecName: Full=Methyltransferase [Cucumber mosaic virus (strain FNY)] Sequence ID: P17769.2 Length: 993 Range 1: 708 to 816 Score:47.8 bits(112), Expect:4e-04, Method:Compositional matrix adjust., Identities:35/111(32%), Positives:58/111(52%), Gaps:6/111(5%) Query 180 TIIGVFGVPGSGKSAIIKNMVT-TRDLVASGKKENCQEI-MNDVKRQRGLDVTA--RTVD 235 TI V GV G GK+ IK++ + D++ + K++ Q++ M K + RT D Sbjct 708 TISQVDGVAGCGKTTAIKSIFEPSTDMIVTANKKSAQDVRMALFKSSDSKEACTFVRTAD 767 Query 236 SILLNGCKKGVENLYVDEAFACHSGTLLALIALVRPSGKVVLCGDPKQCGF 286 S+LLN C V + VDE H G L A+++ ++ + + + GD +Q F Sbjct 768 SVLLNECPT-VSRVLVDEVVLLHFGQLCAVMSKLK-AVRAICFGDSEQIAF 816 >RecName: Full=Replicase large subunit; AltName: Full=209 kDa readthrough protein; AltName: Full=RNA-directed RNA polymerase; Contains: RecName: Full=Replicase small subunit; AltName: Full=150 kDa protein; AltName: Full=Methyltransferase/RNA helicase [Soil-borne wheat mosaic virus strain Nebraska] Sequence ID: Q89249.1 Length: 1828 Range 1: 1027 to 1264 Score:47.8 bits(112), Expect:4e-04, Method:Compositional matrix adjust., Identities:58/239(24%), Positives:100/239(41%), Gaps:22/239(9%) Query 186 GVPGSGKSA-IIKNMVTTRDLVASGKKENCQEIMNDVKRQRGLDVT----ARTVDSILLN 240 GVPG GKS I+ N +D+V KE +++ ++ + RTVDS L++ Sbjct 1027 GVPGCGKSTWILNNANPMKDMVLCVGKEATEDLKEKFMKKHKCAESDLKRIRTVDSFLMH 1086 Query 241 GCKK-GVENLYVDEAFACHSGTLLALIALVRPSGKVVLCGDPKQCGFFNLMQ-LKVHYNH 298 K ++ DEA H+G ++ A + + KV+ GD +Q F N ++ + + Y Sbjct 1087 DYDKFRAATVHFDEALMAHAG-IVYFCADILGAKKVICQGDSQQIPFINRVESITLQYAK 1145 Query 299 NICTRVLHKSISRRCTLPVTAIVS--TLHYQGKMRTTNRCNTPIQIDTTGSSKPASG--- 353 + ++ R + V ++ + + G++ T N +++ +KP + Sbjct 1146 LAIDETEYVRLTYRSPVDVAHYLTKKSWYSGGRVTTKNSVLRSMKVVGPRDAKPMTSVHC 1205 Query 354 ------DIVLTCFRGWVKQLQIDYRGH---EVMTAAASQGLTRKGVYAVRQKVNENPLY 403 LT + L R EV T +QG T V VR K EN +Y Sbjct 1206 VPYHRDAQYLTFTQSEKADLYKALRAKGPVEVNTVHETQGKTFDDVIVVRLKTTENEIY 1264 >RecName: Full=Replicase large subunit; AltName: Full=183 kDa protein; AltName: Full=RNA-directed RNA polymerase; Contains: RecName: Full=Replicase small subunit; AltName: Full=126 kDa protein; AltName: Full=Methyltransferase/RNA helicase; Short=MT/HEL [Tobacco mosaic virus (vulgare)] Sequence ID: P03586.2 Length: 1616 Range 1: 828 to 1100 Score:47.0 bits(110), Expect:8e-04, Method:Compositional matrix adjust., Identities:68/278(24%), Positives:116/278(41%), Gaps:23/278(8%) Query 181 IIGVFGVPGSGKSAIIKNMVT-TRDLVASGKKENCQEIMNDVKRQRGLDVTAR----TVD 235 ++ V GVPG GK+ I + V DL+ K+ E++ G+ V + TVD Sbjct 828 VVLVDGVPGCGKTKEILSRVNFDEDLILVPGKQ-AAEMIRRRANSSGIIVATKDNVKTVD 886 Query 236 SILLNGCKKG---VENLYVDEAFACHSGTLLALIALVRPSGKVVLCGDPKQCGFFNLMQ- 291 S ++N K + L++DE H+G + L+A+ V GD +Q + N + Sbjct 887 SFMMNFGKSTRCQFKRLFIDEGLMLHTGCVNFLVAMSLCEIAYVY-GDTQQIPYINRVSG 945 Query 292 --LKVHYNHNICTRVLHKSISRRCTLPVTAIVSTLHYQGKMRTTNRCNTPIQIDTTGS-- 347 H+ V + + RC VT ++ Y+G + +T+ + + G Sbjct 946 FPYPAHFAKLEVDEVETRRTTLRCPADVTHYLNR-RYEGFVMSTSSVKKSVSQEMVGGAA 1004 Query 348 -----SKPASGDIVLTCFRGWVKQLQIDYRGHEVMTAAASQGLTRKGVYAVRQKVNENPL 402 SKP G I+ F K+ + +V T QG T V VR + Sbjct 1005 VINPISKPLHGKIL--TFTQSDKEALLSRGYSDVHTVHEVQGETYSDVSLVRLTPTPVSI 1062 Query 403 YSPLSEHVNVLLTRTENRLVWKTLSGDPWIKVLTNVPR 440 + S HV V L+R L + T+ DP + ++ ++ + Sbjct 1063 IAGDSPHVLVALSRHTCSLKYYTVVMDPLVSIIRDLEK 1100 >RecName: Full=Replicase large subunit; AltName: Full=183 kDa protein; AltName: Full=RNA-directed RNA polymerase; Contains: RecName: Full=Replicase small subunit; AltName: Full=126 kDa protein; AltName: Full=Methyltransferase/RNA helicase; Short=MT/HEL [Tobacco mosaic virus strain OM] Sequence ID: O93058.1 Length: 1616 Range 1: 828 to 1100 Score:47.0 bits(110), Expect:8e-04, Method:Compositional matrix adjust., Identities:68/278(24%), Positives:116/278(41%), Gaps:23/278(8%) Query 181 IIGVFGVPGSGKSAIIKNMVT-TRDLVASGKKENCQEIMNDVKRQRGLDVTAR----TVD 235 ++ V GVPG GK+ I + V DL+ K+ E++ G+ V + TVD Sbjct 828 VVLVDGVPGCGKTKEILSRVNFDEDLILVPGKQ-AAEMIRRRANSSGIIVATKDNVKTVD 886 Query 236 SILLNGCKKG---VENLYVDEAFACHSGTLLALIALVRPSGKVVLCGDPKQCGFFNLMQ- 291 S ++N K + L++DE H+G + L+A+ V GD +Q + N + Sbjct 887 SFMMNFGKSTRCQFKRLFIDEGLMLHTGCVNFLVAMSLCEIAYVY-GDTQQIPYINRVSG 945 Query 292 --LKVHYNHNICTRVLHKSISRRCTLPVTAIVSTLHYQGKMRTTNRCNTPIQIDTTGS-- 347 H+ V + + RC VT ++ Y+G + +T+ + + G Sbjct 946 FPYPAHFAKLEVDEVETRRTTLRCPADVTHYLNR-RYEGFVMSTSSVKKSVSQEMVGGAA 1004 Query 348 -----SKPASGDIVLTCFRGWVKQLQIDYRGHEVMTAAASQGLTRKGVYAVRQKVNENPL 402 SKP G I+ F K+ + +V T QG T V VR + Sbjct 1005 VINPISKPLHGKIL--TFTQSDKEALLSRGYSDVHTVHEVQGETYSDVSLVRLTPTPVSI 1062 Query 403 YSPLSEHVNVLLTRTENRLVWKTLSGDPWIKVLTNVPR 440 + S HV V L+R L + T+ DP + ++ ++ + Sbjct 1063 IAGDSPHVLVALSRHTCSLKYYTVVMDPLVSIIRDLEK 1100 >RecName: Full=Replication protein 1a; Includes: RecName: Full=ATP-dependent helicase; Includes: RecName: Full=Methyltransferase [Alfalfa mosaic virus (strain 425 / isolate Leiden)] Sequence ID: P03589.1 Length: 1126 Range 1: 830 to 1098 Score:45.8 bits(107), Expect:0.002, Method:Compositional matrix adjust., Identities:64/270(24%), Positives:112/270(41%), Gaps:19/270(7%) Query 178 HTTIIGVFGVPGSGKSAIIKNMVTTR----DLVASGKKENCQEIMNDVKRQRGLDV-TAR 232 H ++ V GV G GK+ IK + + DL+ + + + E+ + + R Sbjct 830 HFSVTIVDGVAGCGKTTNIKQIARSSGRDVDLILTSNRSSADELKETIDCSPLTKLHYIR 889 Query 233 TVDSILLNGCKKGVENLYVDEAFACHSGTLLALIALVRPSGKVVLCGDPKQCGFFNLMQL 292 T DS L++ + L DE F H+G + A L S +V+ GD +Q F + Sbjct 890 TCDSYLMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCS-EVIGFGDTEQIPFVSRNPS 948 Query 293 KVHYNHNICTRVLHKSISRRCTLPVTAIVSTLHYQGK--MRTTNRCNTPIQIDTTGS--S 348 V +H + +V K I+ R T + Y+ K ++T +R I++ S S Sbjct 949 FVFRHHKLTGKVERKLITWRSPADATYCLEKYFYKNKKPVKTNSRVLRSIEVVPINSPVS 1008 Query 349 KPASGDIVLTCF---RGWVKQLQIDYRGHE-VMTAAASQGLTRKGVYAVRQKVNENPLYS 404 + + + C V + Q +G + + T +QG T VY R L + Sbjct 1009 VERNTNALYLCHTQAEKAVLKAQTHLKGCDNIFTTHEAQGKTFDNVYFCRLTRTSTSLAT 1068 Query 405 ---PLSEHVN--VLLTRTENRLVWKTLSGD 429 P++ N V L+R + + T++ D Sbjct 1069 GRDPINGPCNGLVALSRHKKTFKYFTIAHD 1098 >RecName: Full=Replicase large subunit; AltName: Full=183 kDa protein; AltName: Full=RNA-directed RNA polymerase; Contains: RecName: Full=Replicase small subunit; AltName: Full=126 kDa protein; AltName: Full=Methyltransferase/RNA helicase; Short=MT/HEL [Tobacco mosaic virus strain Korean] Sequence ID: P30738.2 Length: 1616 Range 1: 828 to 1100 Score:45.1 bits(105), Expect:0.003, Method:Compositional matrix adjust., Identities:67/278(24%), Positives:115/278(41%), Gaps:23/278(8%) Query 181 IIGVFGVPGSGKSAIIKNMVT-TRDLVASGKKENCQEIMNDVKRQRGLDVTAR----TVD 235 ++ V GVPG GK+ I + V DL+ K+ E++ G+ V + TVD Sbjct 828 VVLVDGVPGCGKTKEILSRVNFDEDLILVPGKQ-AAEMIRRRANSSGIIVATKDNVKTVD 886 Query 236 SILLNGCKKG---VENLYVDEAFACHSGTLLALIALVRPSGKVVLCGDPKQCGFFNLMQ- 291 S ++N K + L++DE H+G + L+ + V GD +Q + N + Sbjct 887 SFMMNFGKSTRCQFKRLFIDEGLMLHTGCVNFLVTMSLCEIAYVY-GDTQQIPYINRVSG 945 Query 292 --LKVHYNHNICTRVLHKSISRRCTLPVTAIVSTLHYQGKMRTTNRCNTPIQIDTTGS-- 347 H+ V + + RC VT ++ Y+G + +T+ + + G Sbjct 946 FPYPAHFAKLEVDEVETRRTTLRCPADVTHYLNR-RYEGFVMSTSSVKKSVSQEMVGGAA 1004 Query 348 -----SKPASGDIVLTCFRGWVKQLQIDYRGHEVMTAAASQGLTRKGVYAVRQKVNENPL 402 SKP G I+ F K+ + +V T QG T V VR + Sbjct 1005 VINPISKPLHGKIL--TFTQSDKEALLSRGYSDVHTVHEVQGETYSDVSLVRLTPTPVSI 1062 Query 403 YSPLSEHVNVLLTRTENRLVWKTLSGDPWIKVLTNVPR 440 + S HV V L+R L + T+ DP + ++ ++ + Sbjct 1063 IAGDSPHVLVALSRHTCSLKYYTVVMDPLVSIIRDLEK 1100 >RecName: Full=Replication protein 1a; Includes: RecName: Full=ATP-dependent helicase; Includes: RecName: Full=Methyltransferase [Tobacco streak virus (strain WC)] Sequence ID: P89680.1 Length: 1094 Range 1: 792 to 943 Score:43.1 bits(100), Expect:0.011, Method:Compositional matrix adjust., Identities:41/157(26%), Positives:69/157(43%), Gaps:16/157(10%) Query 168 GLKIRPAAPYHTTIIGVFGVPGSGKSAIIKNMVT-------TRDLVASGKKENCQEIMND 220 LK+ P + TI+ GV G GK+ +K + + DLV + + + E+ Sbjct 792 ALKLVPT--FKITIVD--GVAGCGKTTHLKKIARIDSSAAGSPDLVLTSNRSSSDELKEV 847 Query 221 VKRQRGLDVTARTVDSILLNGCKKGVENLYVDEAFACHSGTLLALIALVRPSGKVVLCGD 280 + + RTVDS L+ E L DE F H+G + A L + +V+ GD Sbjct 848 IDCPDVMKYRIRTVDSYLMLKSWFSAERLLFDECFLTHAGCVYAAATLAQVK-EVIAFGD 906 Query 281 PKQCGFFN-LMQLKVHYNH---NICTRVLHKSISRRC 313 +Q F + L + ++ ++ I H +S+RC Sbjct 907 TEQVPFISRLPEFRMEHHKVKGKISCTTDHLQMSKRC 943 >RecName: Full=Replication protein alpha-A; Includes: RecName: Full=Methyltransferase; Includes: RecName: Full=NTPase/helicase [Barley stripe mosaic virus] Sequence ID: P17595.1 Length: 1139 Range 1: 838 to 923 Score:42.7 bits(99), Expect:0.013, Method:Compositional matrix adjust., Identities:28/86(33%), Positives:42/86(48%), Gaps:8/86(9%) Query 186 GVPGSGKSAIIKNMVTTRDLVASGKKENCQEIMND-VKRQRGLDVT-----ARTVDSILL 239 GVPG GKS +I N R V G+ N + + + KR++ L+ RT+DS+LL Sbjct 838 GVPGCGKSTMILNSCDIRREVVVGEGRNATDDLRERFKRKKNLNSKTANHRVRTLDSLLL 897 Query 240 --NGCKKGVENLYVDEAFACHSGTLL 263 C + + DEA H G ++ Sbjct 898 AEGPCVPQADRFHFDEALKVHYGAIM 923 >RecName: Full=RNA replication protein; Includes: RecName: Full=Methyltransferase; Includes: RecName: Full=Helicase; Includes: RecName: Full=RNA-directed RNA polymerase [Citrus leprosis virus C BRA/Cordeiropolis] Sequence ID: Q1KZ59.1 Length: 2512 Range 1: 1554 to 1682 Score:42.7 bits(99), Expect:0.013, Method:Compositional matrix adjust., Identities:37/130(28%), Positives:59/130(45%), Gaps:14/130(10%) Query 180 TIIGVFGVPGSGKSAIIKNMVTTRDLVASGKKENCQEIMNDVKRQ------RGLDVTART 233 +I V V G+GK+ ++ DLV EN I +KR+ + +D RT Sbjct 1554 SIDWVQAVAGAGKTTLLVETFLITDLVVCPTVENRDSIRLRIKRRYPDLDPKEVDCRVRT 1613 Query 234 VDSILLNGCKKGV-----EN--LYVDEAFACHSGTLLALIALVRPSGKVVLCGDPKQCGF 286 ++ L++ K EN L VDEA H+G L L ++ ++ GD KQ F Sbjct 1614 INGYLVDFSTKLAKVTLNENTRLLVDEAIMYHAGCLFVL-CMIYNIRRMFCVGDKKQIPF 1672 Query 287 FNLMQLKVHY 296 + + K++Y Sbjct 1673 VSRIDFKLNY 1682