< Краткое описание Donggang virus 25586

Краткое описание Donggang virus 25586

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Краткое описание генома вируса Donggang virus 1.

 
Отряд: ssRNA viruses
Порядок: ssRNA positive-strand viruses, no DNA stage
Семейство:Flaviviridae 
Род:   Flavivirus
Вид: Donggang virus 1
            

Таблица 1. Основные параметры генома вируса Donggang virus 1.

Параметр
Значение
Латинское название вируса Donggang virus
Русское название вируса Вирус Дунган
Количество фрагментов в полном геноме 2
Общая длина генома (п.н.) 10791
Количество кодируемых в геноме белков 3

Название последовательности из одного белка: NC_016997.1

>NC_016997 polyprotein
MRSMVFRARRPVKRAVDIIKRKLPYVPPPMRVAKMAAKKVMMGI
GSLKAFLALFLFMTFTGRKISNEQHKRFRSIDKTKAMKVLATFKKILGNLMKTLQTRK
KRPNRRSAGSNGMMMLALIGTAMAATSMTKDDTIYMTVEPKDVGTWLSIRTRLGNGSC
IVNAMDVGTMCEDKVTYECPKIDGSSDPEDVDCWCKGISVVLTYGRCKTNSTTPAPQR
RRSRRSIMIPTHSTGGLHQGTEGWHRTNNVKNFLMRVEKWSLRNPGYTALIAILGWTL
GTTTAQKVIFIALLLMIAPVYGSQCSGIDKRDFIQGVSGGTWVDVVLDRKGCVTISAT
GKPTIDVRMVKMEASNLASVRTYCLEASTSEISSVNGCPSTTEAHNDKRKDSTYLCER
SYPDRGWGNGCGLFGRGSLDTCVKFACSKKMAGHAISRENIVITAAVSVHGHSGAESD
DDSQRKSRKELAELTITPKSSIVEADLGDYGKVQFECLMDFGIDLDDVYTADMSGKWW
LVKRDWYHDIALPWTAPSADFWHDMDRLVEFSTPHATKQSVYTLGDQEGAMSTALGDA
AVIEYMSSGSKVVFRTGFLKCRVKMENLRLKGSTYMQCSKEFSILKRPTATPYGTVIM
QVKYAQTDVPCRVPVGVHERPGGEQVGRIITAHPIILKQNDALVIEVEPPFGDSVIEI
GLGTTKIVEQWHRDGSSIGAAFTSTMKGVERMALLGEHAWDFGSVGGFFNSMGKAIHS
VFGGLFRAVFGGMSWISKVLIGAILMWLGVSAREKTLAMSLITVGAILLYLSTMTNAV
SEVGCSLDLSRHEIKCGDGVFLFRDVSNWRDKYVFHPGSPRTLAASVWSAWNNGICGV
RSTTRMEHEMWKQVENEINGIFEENAIALSVVVKNANGTFPRGHKRLPVNTTGLQHGW
KTWGKTKLMQVPLAKDVFIIDGNDEGECVSTNRSWNTFRVEEFGTGIMKTKVFLDINP
TLTRYCDTELLGAAVKGNHSAHGDPGLWMVSEKEGSEWKLTSLSLSESRRCLWPDSHT
VWGRGVEETKLILPANLGGPVSHMNTRYGYSTQISGPWNNVPLDVVFETCPGTTVNVT
RTCVGRSASARSTTDSGKIIPEWCCRACTMPPLTYRTPDGCWYAMEIQPMNTKEESIL
RARVSAGAVHGLDNFSLGLLVMMLVTQEGLKRRFTSKHIMLAGIGLLICVIMGDLTYT
DLARYAVLLGTTFAEMNSGGDVMHLALVATFKVKPAYLLGFLFRMRWSPRESFMLVCG
AILMQTGMGVLACHHMMDYVHACALGWLLVRSLVVPGMVSKALPLLCCLAPLPLAVMT
NATRASVATLAVGTMLAGAKGKSVKKSLPWFSALIASWMGCNPLGMMVFASFMRKHGK
RSWPAGEVMAAVGIVCALAGAITENQGEVAGPAAAAALIFTAYAISGKANDIFLEKAG
EMTWSHDAQLSGSSPRVDVKVGESGDFRLRHESEDSWLKTGVTAGCLIMAGFHPLAIP
VAGLIWYGYVKHDRRGGVLWDIPHPSTSKAGDTETGVYRIMSKRLFGATQIGVGVMYE
SVFHTMWHVTRGASLMSGEGRIDPYWADVREDLISYGGPWRLNGTWDGTTEVQLIAVS
PGKVPINVQTKPGKFVLTDGREIGAVVLDYPPGTSGSPVIDQEGKIVGLYGNGVMLNE
QTFASSIAQTLPRTCEVPHAFHDGMLSKGTLSVLDLHPGAGKTRRVLPEILREAVKKN
LKTLVLAPTRVVAREMAEALAGLPVRYQTPSVSQDSTGRELIDLMCHATFTYRQLTPG
RMVNYQLYVMDEAHFTDPASIAARGIISTRVSLGEAAAMFMTATPPGTTDAFPESNGH
IEDEEREVPDAAWSAGFDWITEFNGKTIWFAPSIKTSNILASCLCRAGKKVIILNSRT
FNEEYGKTKSGDWDFVITTDISEMGANIKADRVIDSRLSIKPVLVTTPTERIVLSGPK
PVSAASAAQRRGRVGRDPTKHGDQYIFGGPISTDDGDMAHWIEAKILMDNITVPGGLY
PQFYEPERMKCPATDGFHRLDDKKRAVLRDLIRRADLPVWLSYQVAKNGYTYEDRTWC
HSGPSSHLVFDDFGQTVEYRSSNGEKRILQPKWIDQRVYQERASLKSFTEFAEGRRSY
MPILDVVGKLPQHFSDRAIDAADTIRTVLTANPDSRSYRLAIDNLPEAAETAMLIGML
VSVTMGSIMFLMMPKGITRMSLGLIVMIMATWFMWTSGMAGYQIAAVQLLAFVFFLVL
VPEPGNQRSIQDNQIAMVLFGLLAVIGGIAANEMGMLERTKADIGTLFSRSSPTHTSW
SGWNIDLSVDLKPSVSWSVYIVLTTLVGPMLEHAIVTDYASLSLAAIASQAGVLLSMD
KGLPFMSLEWGVILLGVGSWTGITALALIAGMVMTLMHFALILPGLKAKAAREAQSRT
AAGISKNPLIDGVNTTAIPLPSAIDPMFEKKLGLWMLLIVSSLAVLLNRSTLHMTELG
ILGSAAISPLIEGQASAIWNTSVAASVCNLMRGSYLGGIPLTYTVIRNLQQKQPSRRG
KKVEYTLGIKWKNRLNAMDKREFSVYKRDGILEVNRTPAQEALKSGNVTGGHAVSRGS
AKLRWLHEKGYVDLSGHMVDLGCGRGGWSYYAAAQKKIVRVKGYTKGGPGHEEPVPVQ
SYGWNLVTMRSNVDVFYLGTEKCDTLVCDIGESSSSYMVEEERTLRVLNMFETWLKEQ
HPENFVCKVLAPYMPAVIEKIDVLMKNFGGALVRVPLSRNSTHEMYWVSGAKGNAMNA
VSSLSRQLIARMEKPKYVMCLEEDVNLGTGTRAVTCEAEPPNMDKIGHRVERLRKEYK
QTWFYDNEHPYRTWVYHGSYETKTTGSASSMLNGVVKEMSKPWDTIYGVTSVCMTDTT
PFGQQRVFKEKVDTKASEPKAGIREVMRITNRWLLNELSREKTPRLCTPDEFIAKVNS
DAALGVMFSDQGDWTTAKEAVRDPRFWKLVDAEREEHLQGRCTTCIYNMMGKREKKST
EFGRAKGSRAIWFMWLGARYLEFEALGFLNEDHWLERSNSHGGVEGIGLQYLGYVIEE
MSHIPGGNFYADDTAGWDTKITNADLEDELMIVERMGKTHRRLAQSIMELTYMNKVVR
VMRPGTRGKTMMDVISRKDQRGSGQVVTYPLNTWTNLKVQLIRMAESEGVIHGDDVET
LSSSGRINLEMWLVMNGADRLKRMACSGDDVVVKPIDDRFAGALVFLNGMAKTRKDIN
EWKPSVGWHNWEGVPFCSHHFHQLWLRDGRSIIVPCRDQDELIGRARVSPGVGWTLKE
TAGLSKAYAQMWLLMHFHRRDLRMMAFAICSSVPVNWVPTGRTSWSLHARGEWMTTED
MLQVWNRVWIDDNPHMMKKTHVHDWRDIPYSCKGQDISCGSLIGTRSRATWADNIKTA
VNQVRGIIGRDEKYMDYLAIQNRFMPPLQFRLGSVL

Источники:

  1. [1] - NCBI