BLASTP 2.12.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schaffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: User specified sequence set (Input: sum.fasta). 21,256 sequences; 6,841,464 total letters Query= sp|P0A6H1|CLPX_ECOLI ATP-dependent Clp protease ATP-binding subunit ClpX OS=Escherichia coli (strain K12) OX=83333 GN=clpX PE=1 SV=2 Length=424 Score E Sequences producing significant alignments: (Bits) Value sp|Q12LA2|CLPX_SHEDO ATP-dependent Clp protease ATP-binding subun... 712 0.0 sp|Q3SI99|CLPX_THIDA ATP-dependent Clp protease ATP-binding subun... 642 0.0 sp|P57981|CLPX_PASMU ATP-dependent Clp protease ATP-binding subun... 612 0.0 sp|Q6G3Z2|CLPX_BARHE ATP-dependent Clp protease ATP-binding subun... 588 0.0 sp|P44838|CLPX_HAEIN ATP-dependent Clp protease ATP-binding subun... 587 0.0 sp|A5FX05|CLPX_ACICJ ATP-dependent Clp protease ATP-binding subun... 583 0.0 sp|Q165G0|CLPX_ROSDO ATP-dependent Clp protease ATP-binding subun... 582 0.0 sp|Q9JTX8|CLPX_NEIMA ATP-dependent Clp protease ATP-binding subun... 557 0.0 sp|Q6G5G0|HSLU_BARHE ATP-dependent protease ATPase subunit HslU O... 97.1 4e-22 sp|Q12IT8|HSLU_SHEDO ATP-dependent protease ATPase subunit HslU O... 94.0 4e-21 sp|Q16CY2|HSLU_ROSDO ATP-dependent protease ATPase subunit HslU O... 93.6 6e-21 sp|P57968|HSLU_PASMU ATP-dependent protease ATPase subunit HslU O... 93.2 8e-21 tr|A5FYD7|A5FYD7_ACICJ ATP-dependent protease ATPase subunit HslU... 92.0 2e-20 sp|P43773|HSLU_HAEIN ATP-dependent protease ATPase subunit HslU O... 92.0 2e-20 tr|Q3SFW1|Q3SFW1_THIDA ATP-dependent protease ATPase subunit HslU... 86.7 1e-18 sp|Q168A2|RUVB_ROSDO Holliday junction branch migration complex s... 45.4 2e-05 tr|A0A0H3LXZ4|A0A0H3LXZ4_BARHE ATP-dependent zinc metalloprotease... 45.4 3e-05 tr|A5FVF9|A5FVF9_ACICJ ATP-dependent zinc metalloprotease FtsH OS... 44.7 5e-05 sp|Q6G5R1|RUVB_BARHE Holliday junction branch migration complex s... 43.5 8e-05 > sp|Q12LA2|CLPX_SHEDO ATP-dependent Clp protease ATP-binding subunit ClpX OS=Shewanella denitrificans (strain OS217 / ATCC BAA-1090 / DSM 15013) OX=318161 GN=clpX PE=3 SV=1 Length=426 Score = 712 bits (1837), Expect = 0.0, Method: Compositional matrix adjust. Identities = 346/425 (81%), Positives = 382/425 (90%), Gaps = 1/425 (0%) Query 1 MTDKRKDG-SGKLLYCSFCGKSQHEVRKLIAGPSVYICDECVDLCNDIIREEIKEVAPHR 59 M D + +G SGKLLYCSFCGKSQHEVRKLIAGPSVY+CDECV+LCNDIIREEIKE++P R Sbjct 1 MGDNKNNGDSGKLLYCSFCGKSQHEVRKLIAGPSVYVCDECVELCNDIIREEIKEISPKR 60 Query 60 ERSALPTPHEIRNHLDDYVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIG 119 + LPTPHE+RNHLD+YVIGQ++AKKVLAVAVYNHYKRLRNG T GVELGKSNILLIG Sbjct 61 DHDKLPTPHELRNHLDEYVIGQDKAKKVLAVAVYNHYKRLRNGTTKEGVELGKSNILLIG 120 Query 120 PTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQRG 179 PTGSGKTLLAETLAR L+VPF MADATTLTEAGYVGEDVENIIQKLLQKCDYDV+KAQRG Sbjct 121 PTGSGKTLLAETLARSLNVPFAMADATTLTEAGYVGEDVENIIQKLLQKCDYDVEKAQRG 180 Query 180 IVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQVD 239 IVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVA+VPPQGGRKHPQQEFLQVD Sbjct 181 IVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVASVPPQGGRKHPQQEFLQVD 240 Query 240 TSKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLIKFG 299 TSKILFICGGAFAGL+KVI R TG+GIGFGA VK + DKA+ ++L QVEPEDL+K+G Sbjct 241 TSKILFICGGAFAGLEKVIEQRAHTGTGIGFGAEVKGEQDKATISQILGQVEPEDLVKYG 300 Query 300 LIPEFIGRLPVVATLNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALDAIA 359 LIPEFIGRLPVVATL EL E ALIQIL +PKNALTKQY ALF +E V+LEFR++AL AIA Sbjct 301 LIPEFIGRLPVVATLTELDESALIQILSQPKNALTKQYGALFEMENVELEFREDALKAIA 360 Query 360 KKAMARKTGARGLRSIVEAALLDTMYDLPSMEDVEKVVIDESVIDGQSKPLLIYGKPEAQ 419 KKAM+RKTGARGLRSIVE LLDTMYDLP+++ V K VIDESV+ G+S P+LIY + + Sbjct 361 KKAMSRKTGARGLRSIVEGILLDTMYDLPTVKGVVKAVIDESVVKGESDPILIYENNDTK 420 Query 420 QASGE 424 ASGE Sbjct 421 AASGE 425 > sp|Q3SI99|CLPX_THIDA ATP-dependent Clp protease ATP-binding subunit ClpX OS=Thiobacillus denitrificans (strain ATCC 25259) OX=292415 GN=clpX PE=3 SV=1 Length=423 Score = 642 bits (1657), Expect = 0.0, Method: Compositional matrix adjust. Identities = 321/415 (77%), Positives = 359/415 (87%), Gaps = 6/415 (1%) Query 1 MTDKRKDGSG-KLLYCSFCGKSQHEVRKLIAGPSVYICDECVDLCNDIIREEIKEVAPHR 59 M DK GSG KLLYCSFCGKSQHEVRKLIAGPSV+ICDECV+LCNDIIREEI++ + Sbjct 1 MADK---GSGDKLLYCSFCGKSQHEVRKLIAGPSVFICDECVELCNDIIREEIQQADSQK 57 Query 60 ERSA-LPTPHEIRNHLDDYVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLI 118 S+ LPTPHEI LD YVIGQ QAKK LAVAVYNHYKRLR+ S VEL KSNILLI Sbjct 58 GASSDLPTPHEISGILDQYVIGQGQAKKALAVAVYNHYKRLRSSSGSGDVELAKSNILLI 117 Query 119 GPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQR 178 GPTGSGKTLLA+TLARLL+VPF +ADATTLTEAGYVGEDVENIIQKLLQKCDYDV KA++ Sbjct 118 GPTGSGKTLLAQTLARLLNVPFVIADATTLTEAGYVGEDVENIIQKLLQKCDYDVDKAKQ 177 Query 179 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQV 238 GIVYIDEIDKISRK+DNPSITRDVSGEGVQQALLKLIEGT A+VPPQGGRKHP QEF+QV Sbjct 178 GIVYIDEIDKISRKADNPSITRDVSGEGVQQALLKLIEGTTASVPPQGGRKHPNQEFVQV 237 Query 239 DTSKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLIKF 298 DTS ILFICGGAF+GL+KVI R E G GIGFGA VK + + ELL QVEPEDLIK+ Sbjct 238 DTSNILFICGGAFSGLEKVIRGRTEKG-GIGFGAQVKNVDENKRDAELLHQVEPEDLIKY 296 Query 299 GLIPEFIGRLPVVATLNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALDAI 358 GLIPEF+GRLPVVATL+EL E AL+QIL EPKNALTKQ+ LF +EGVDLEFRD+AL+AI Sbjct 297 GLIPEFVGRLPVVATLDELDEAALVQILTEPKNALTKQFAKLFKMEGVDLEFRDDALNAI 356 Query 359 AKKAMARKTGARGLRSIVEAALLDTMYDLPSMEDVEKVVIDESVIDGQSKPLLIY 413 AK+A+ R+TGARGLRSI+E ALLDTMYDLPS++ V KVV+D ++I G+ +PLLIY Sbjct 357 AKRALLRRTGARGLRSIIEHALLDTMYDLPSLKGVSKVVVDNALISGEGQPLLIY 411 > sp|P57981|CLPX_PASMU ATP-dependent Clp protease ATP-binding subunit ClpX OS=Pasteurella multocida (strain Pm70) OX=272843 GN=clpX PE=3 SV=1 Length=411 Score = 612 bits (1579), Expect = 0.0, Method: Compositional matrix adjust. Identities = 297/403 (74%), Positives = 342/403 (85%), Gaps = 2/403 (0%) Query 13 LYCSFCGKSQHEVRKLIAGPSVYICDECVDLCNDIIREEIKEV--APHRERSALPTPHEI 70 L+CSFCGK Q V KLIAG S YIC+EC++LC+D++ + E E+ LPTPHEI Sbjct 7 LHCSFCGKEQKHVSKLIAGTSGYICNECIELCHDMLLSDAVETPEVESTEQQKLPTPHEI 66 Query 71 RNHLDDYVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAE 130 R HLDDYVIGQ+ AKKVL+VAVYNHYKRLR+ VELGKSNILLIGPTGSGKTLLAE Sbjct 67 RAHLDDYVIGQDYAKKVLSVAVYNHYKRLRSDKQITDVELGKSNILLIGPTGSGKTLLAE 126 Query 131 TLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQRGIVYIDEIDKIS 190 T+AR+L+VPF MADATTLTEAGYVGEDVEN++QKL+Q CDYDV++A++GI+YIDEIDKI+ Sbjct 127 TMARMLNVPFAMADATTLTEAGYVGEDVENVLQKLVQSCDYDVERAEQGIIYIDEIDKIT 186 Query 191 RKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQVDTSKILFICGGA 250 RKS+NPSITRDVSGEGVQQALLKLIEGTVA++PPQGGRKHPQQE L+VDTSKILFICGGA Sbjct 187 RKSENPSITRDVSGEGVQQALLKLIEGTVASIPPQGGRKHPQQEMLRVDTSKILFICGGA 246 Query 251 FAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLIKFGLIPEFIGRLPV 310 FAGLDKVI RV GSGIGF A VK+K DKA+ +L QVEP+DL+KFGLIPEFIGRLPV Sbjct 247 FAGLDKVIEKRVHVGSGIGFSAEVKSKQDKATLSQLFEQVEPDDLMKFGLIPEFIGRLPV 306 Query 311 VATLNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALDAIAKKAMARKTGAR 370 VA L EL EEAL++IL EPKNAL KQYQALF+LE V LEF EAL A+AKKA+ARKTGAR Sbjct 307 VAPLAELDEEALVKILTEPKNALIKQYQALFSLEDVALEFSPEALTAMAKKALARKTGAR 366 Query 371 GLRSIVEAALLDTMYDLPSMEDVEKVVIDESVIDGQSKPLLIY 413 GLRSIVEA LLDTMYDLPS++ +EKV+++ S I P L+Y Sbjct 367 GLRSIVEAILLDTMYDLPSLQHLEKVIVEASTITDNQPPTLVY 409 > sp|Q6G3Z2|CLPX_BARHE ATP-dependent Clp protease ATP-binding subunit ClpX OS=Bartonella henselae (strain ATCC 49882 / DSM 28221 / CCUG 30454 / Houston 1) OX=283166 GN=clpX PE=3 SV=1 Length=424 Score = 588 bits (1517), Expect = 0.0, Method: Compositional matrix adjust. Identities = 289/407 (71%), Positives = 341/407 (84%), Gaps = 3/407 (1%) Query 9 SGKLLYCSFCGKSQHEVRKLIAGPSVYICDECVDLCNDIIREEIKEVAPHRERSALPTPH 68 S LYCSFCGKSQHEVRKLIAGP+V+ICDECV+LC DIIREE K + + R +PTP Sbjct 11 SKNTLYCSFCGKSQHEVRKLIAGPTVFICDECVELCMDIIREENKS-SGIKARDGVPTPQ 69 Query 69 EIRNHLDDYVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLL 128 EI LDDYVIGQ+ AK+VL+VAV+NHYKRL + SN +EL KSNILL+GPTG GKT L Sbjct 70 EIITVLDDYVIGQQHAKRVLSVAVHNHYKRLAHQSKSNDIELAKSNILLVGPTGCGKTYL 129 Query 129 AETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQRGIVYIDEIDK 188 A+TLAR++DVPFTMADATTLTEAGYVGEDVENII KLLQ DY+V++AQRGIVYIDE+DK Sbjct 130 AQTLARIIDVPFTMADATTLTEAGYVGEDVENIILKLLQAADYNVERAQRGIVYIDEVDK 189 Query 189 ISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQVDTSKILFICG 248 ISRK+DNPSITRDVSGEGVQQALLK++EGT+A+VPPQGGRKHPQQEFLQVDT+ ILFICG Sbjct 190 ISRKADNPSITRDVSGEGVQQALLKIMEGTIASVPPQGGRKHPQQEFLQVDTTNILFICG 249 Query 249 GAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLIKFGLIPEFIGRL 308 GAFAGL+++IS R E S IGF ATVKA D+ GE+ +EPEDLIKFGLIPEFIGRL Sbjct 250 GAFAGLERIISGRGEKTS-IGFSATVKA-PDERCVGEIFRDLEPEDLIKFGLIPEFIGRL 307 Query 309 PVVATLNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALDAIAKKAMARKTG 368 P+VATL +L AL+QIL +PKNAL KQYQ LF +E V+L F ++AL IAKKA+ RKTG Sbjct 308 PIVATLEDLDVNALVQILSKPKNALVKQYQRLFEMENVELAFHEDALRVIAKKAIERKTG 367 Query 369 ARGLRSIVEAALLDTMYDLPSMEDVEKVVIDESVIDGQSKPLLIYGK 415 ARGLRSI+E LL+TM++LP++E V+KVVI V+DG++ PL IY + Sbjct 368 ARGLRSIMEKILLETMFELPALEGVQKVVISSDVVDGKAHPLYIYSE 414 > sp|P44838|CLPX_HAEIN ATP-dependent Clp protease ATP-binding subunit ClpX OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) OX=71421 GN=clpX PE=3 SV=1 Length=411 Score = 587 bits (1512), Expect = 0.0, Method: Compositional matrix adjust. Identities = 291/417 (70%), Positives = 342/417 (82%), Gaps = 10/417 (2%) Query 1 MTDKRKDGSGKLLYCSFCGKSQHEVRKLIAGPSVYICDECVDLCNDIIRE----EIKEVA 56 MTDK KD L+CSFCGK + EV +LIAG YIC+EC++LC+ ++ E ++E A Sbjct 1 MTDKDKD-----LHCSFCGKEKGEVDRLIAGTDGYICNECIELCHSMLEESHDKNLEESA 55 Query 57 PHRERSALPTPHEIRNHLDDYVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNIL 116 E LPTPHEIR HLDDYVIGQ+ AKKVL+VAVYNHYKRLR SN VELGKSNIL Sbjct 56 VENEEK-LPTPHEIRAHLDDYVIGQDYAKKVLSVAVYNHYKRLRTNYESNDVELGKSNIL 114 Query 117 LIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKA 176 LIGPTGSGKTLLA+TLAR L+VPF MADATTLTEAGYVGEDVEN++QKLLQ C+YD +KA Sbjct 115 LIGPTGSGKTLLAQTLARRLNVPFAMADATTLTEAGYVGEDVENVLQKLLQNCEYDTEKA 174 Query 177 QRGIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFL 236 ++GI+YIDEIDKISRKS+ SITRDVSGEGVQQALLKLIEGT+A++PPQGGRKHPQQE + Sbjct 175 EKGIIYIDEIDKISRKSEGASITRDVSGEGVQQALLKLIEGTIASIPPQGGRKHPQQEMV 234 Query 237 QVDTSKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLI 296 ++DTSKILFICGGAFAGLDK+I R +T + IGF A V+ + S EL QVEP+DL+ Sbjct 235 KLDTSKILFICGGAFAGLDKIIDKRTQTSTSIGFNAKVEKDEKQQSLSELFRQVEPDDLM 294 Query 297 KFGLIPEFIGRLPVVATLNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALD 356 KFGLIPEFIGRLP++A L+EL E+ALIQIL +PKNAL KQYQALF LE V+L+F EAL Sbjct 295 KFGLIPEFIGRLPMIAPLSELDEDALIQILTKPKNALIKQYQALFGLEKVELDFTPEALK 354 Query 357 AIAKKAMARKTGARGLRSIVEAALLDTMYDLPSMEDVEKVVIDESVIDGQSKPLLIY 413 A+AKKA+ RKTGARGLRSIVEA LLDTMYDLPS+E+++KV++DES I P L Y Sbjct 355 AMAKKALERKTGARGLRSIVEAVLLDTMYDLPSLENLQKVIVDESTIVDNLAPKLEY 411 > sp|A5FX05|CLPX_ACICJ ATP-dependent Clp protease ATP-binding subunit ClpX OS=Acidiphilium cryptum (strain JF-5) OX=349163 GN=clpX PE=3 SV=1 Length=418 Score = 583 bits (1504), Expect = 0.0, Method: Compositional matrix adjust. Identities = 287/422 (68%), Positives = 350/422 (83%), Gaps = 4/422 (1%) Query 1 MTDKRKDGSGKLLYCSFCGKSQHEVRKLIAGPSVYICDECVDLCNDIIREEIKEVAPHRE 60 M+ K D S LYCSFCGKSQHEV KLIAGP+V+IC+ECV+LC DIIRE+ + Sbjct 1 MSTKSGD-SKNTLYCSFCGKSQHEVVKLIAGPTVFICNECVELCMDIIRED-NRTHLVKT 58 Query 61 RSALPTPHEIRNHLDDYVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGP 120 R +PTP EI LDDYVIGQ+ AK++L+VAV+NHYKRL + +N +E+ KSNI+L+GP Sbjct 59 RDGVPTPREICKVLDDYVIGQDHAKRILSVAVHNHYKRLAHAQKNNDIEIAKSNIMLVGP 118 Query 121 TGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQRGI 180 TGSGKTLLA+TLAR+LDVPFTMADATTLTEAGYVGEDVENII KLLQ DY+V++AQRGI Sbjct 119 TGSGKTLLAQTLARILDVPFTMADATTLTEAGYVGEDVENIILKLLQAADYNVERAQRGI 178 Query 181 VYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQVDT 240 VYIDE+DKISRKSDNPSITRDVSGEGVQQALLK++EGTVA+VPPQGGRKHPQQEFLQVDT Sbjct 179 VYIDEVDKISRKSDNPSITRDVSGEGVQQALLKIMEGTVASVPPQGGRKHPQQEFLQVDT 238 Query 241 SKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLIKFGL 300 + ILFICGGAFAGL+K+I+ R + GSGIGFGA V+ +++ + G +L +VEPEDL+KFGL Sbjct 239 TNILFICGGAFAGLEKIIAQRGK-GSGIGFGADVRDPTEQRT-GAILREVEPEDLLKFGL 296 Query 301 IPEFIGRLPVVATLNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALDAIAK 360 IPEFIGRLPVVATL +L E ALI+IL +PKNAL KQY LF +EGV L F ++AL +A Sbjct 297 IPEFIGRLPVVATLEDLDEAALIEILTKPKNALVKQYGRLFEMEGVKLNFTEDALKVVAA 356 Query 361 KAMARKTGARGLRSIVEAALLDTMYDLPSMEDVEKVVIDESVIDGQSKPLLIYGKPEAQQ 420 +A+ RKTGARGLRSI+E LL+TM+DLP ++ VE+VVI+ V +G++ PL ++GK A+ Sbjct 357 RAIQRKTGARGLRSIMENILLETMFDLPGLDSVEEVVINGEVAEGRANPLFLHGKERAET 416 Query 421 AS 422 S Sbjct 417 GS 418 > sp|Q165G0|CLPX_ROSDO ATP-dependent Clp protease ATP-binding subunit ClpX OS=Roseobacter denitrificans (strain ATCC 33942 / OCh 114) OX=375451 GN=clpX PE=3 SV=1 Length=421 Score = 582 bits (1499), Expect = 0.0, Method: Compositional matrix adjust. Identities = 286/416 (69%), Positives = 341/416 (82%), Gaps = 4/416 (1%) Query 8 GSGK-LLYCSFCGKSQHEVRKLIAGPSVYICDECVDLCNDIIREEIKEVAPHRERSALPT 66 G GK LYCSFCGKSQHEVRKLIAGP+V+ICDECV+LC DIIREE K + + +PT Sbjct 7 GDGKNTLYCSFCGKSQHEVRKLIAGPTVFICDECVELCMDIIREETK-ASGLKATDGVPT 65 Query 67 PHEIRNHLDDYVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKT 126 P +I LDDYVIGQ AK+VL+VAV+NHYKRL + +EL KSNILLIGPTG GKT Sbjct 66 PKDICAVLDDYVIGQAMAKRVLSVAVHNHYKRLNHAQKGGDIELAKSNILLIGPTGCGKT 125 Query 127 LLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQRGIVYIDEI 186 LLA+TLAR+LDVPFTMADATTLTEAGYVGEDVENII KLLQ +Y+V++AQRGIVYIDE+ Sbjct 126 LLAQTLARILDVPFTMADATTLTEAGYVGEDVENIILKLLQSSEYNVERAQRGIVYIDEV 185 Query 187 DKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQVDTSKILFI 246 DKI+RKS+NPSITRDVSGEGVQQALLKL+EGTVA+VPPQGGRKHPQQEFLQVDT+ ILFI Sbjct 186 DKITRKSENPSITRDVSGEGVQQALLKLMEGTVASVPPQGGRKHPQQEFLQVDTTNILFI 245 Query 247 CGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLIKFGLIPEFIG 306 CGGAFAGLDK+I+ R + GS +GFGA V+ D+ GE+ +EPEDL+KFGLIPEF+G Sbjct 246 CGGAFAGLDKIIAARGK-GSAMGFGADVRGNDDRGV-GEIFTDLEPEDLLKFGLIPEFVG 303 Query 307 RLPVVATLNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALDAIAKKAMARK 366 RLPV+ATL +L E+AL+ IL +PKNAL KQYQ LF LE +L F D+AL AIAK+A+ RK Sbjct 304 RLPVLATLEDLDEDALVTILTQPKNALVKQYQRLFELEDTELTFTDDALSAIAKRAIERK 363 Query 367 TGARGLRSIVEAALLDTMYDLPSMEDVEKVVIDESVIDGQSKPLLIYGKPEAQQAS 422 TGARGLRSI+E LLDTM+DLP +E V +VV++E ++ + PL+I+ + AS Sbjct 364 TGARGLRSILEDILLDTMFDLPGLESVTEVVVNEEAVNSDAAPLMIHADASKEPAS 419 > sp|Q9JTX8|CLPX_NEIMA ATP-dependent Clp protease ATP-binding subunit ClpX OS=Neisseria meningitidis serogroup A / serotype 4A (strain DSM 15465 / Z2491) OX=122587 GN=clpX PE=3 SV=1 Length=414 Score = 557 bits (1435), Expect = 0.0, Method: Compositional matrix adjust. Identities = 281/406 (69%), Positives = 325/406 (80%), Gaps = 8/406 (2%) Query 15 CSFCGKSQHEVRKLIAGPSVYICDECVDLCNDIIREEIKEVAPHR-------ERSALPTP 67 CSFCGKS+ V+ LI G + +ICDECV C +I+ E+ + P E LPTP Sbjct 8 CSFCGKSKSHVKHLIEGENAFICDECVSNCIEILHEDGNDGTPSESAGGEPEESGKLPTP 67 Query 68 HEIRNHLDDYVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTL 127 EI +L+D+VIGQEQAKK LAV+VYNHYKRLR+ VEL KSNILLIGPTGSGKTL Sbjct 68 AEIVANLNDHVIGQEQAKKALAVSVYNHYKRLRHPKARANVELSKSNILLIGPTGSGKTL 127 Query 128 LAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQRGIVYIDEID 187 LA++LAR LDVPF MADATTLTEAGYVGEDVE II KLL KCD+DV+KAQRGIVYIDEID Sbjct 128 LAQSLARKLDVPFVMADATTLTEAGYVGEDVEQIITKLLGKCDFDVEKAQRGIVYIDEID 187 Query 188 KISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQVDTSKILFIC 247 KISRKSDNPSITRDVSGEGVQQALLKLIEGTVA+VPPQGGRKHP QEF+ VDT+ ILFIC Sbjct 188 KISRKSDNPSITRDVSGEGVQQALLKLIEGTVASVPPQGGRKHPNQEFINVDTTNILFIC 247 Query 248 GGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLIKFGLIPEFIGR 307 GGAFAGL+KVI R E G GIGFGA+V +K + A +L VEPEDLIKFGLIPE IGR Sbjct 248 GGAFAGLEKVIRQRTEKG-GIGFGASVHSKDENADITKLFGIVEPEDLIKFGLIPELIGR 306 Query 308 LPVVATLNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALDAIAKKAMARKT 367 LPV+ATL EL E+ALI IL EPKNAL KQYQALF +E V+LEF + AL +IA++AM RKT Sbjct 307 LPVIATLEELDEDALINILTEPKNALVKQYQALFGMENVELEFEEGALRSIARQAMERKT 366 Query 368 GARGLRSIVEAALLDTMYDLPSMEDVEKVVIDESVIDGQSKPLLIY 413 GARGLRSIVE LLDTMY LP ++ ++KVV+ ++VI+ +P L++ Sbjct 367 GARGLRSIVERCLLDTMYRLPDLQGLKKVVVGKAVIEEGREPELVF 412 > sp|Q6G5G0|HSLU_BARHE ATP-dependent protease ATPase subunit HslU OS=Bartonella henselae (strain ATCC 49882 / DSM 28221 / CCUG 30454 / Houston 1) OX=283166 GN=hslU PE=3 SV=1 Length=436 Score = 97.1 bits (240), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 83/237 (35%), Positives = 111/237 (47%), Gaps = 65/237 (27%) Query 157 DVENIIQKLLQKCDYDVQKAQRGIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIE 216 D + IIQ+ L+ + D GIV+IDEIDKI+ + S VS EGVQ+ LL L+E Sbjct 228 DQDQIIQEALRVAEND------GIVFIDEIDKIATRDGGASAA--VSREGVQRDLLPLVE 279 Query 217 GTVAAVPPQGGRKHPQQEFLQVDTSKILFICGGAFAGLDKVISHRVETGSGIGFGATVKA 276 GT A ++ Q+ T ILFI GAF V Sbjct 280 GTTIAT-----------KYGQIKTDHILFIASGAFH---------------------VSK 307 Query 277 KSDKASEGELLAQVEPEDLIKFGLIPEFIGRLPVVATLNELSEEALIQILKEPKNALTKQ 336 SD L+PE GRLP+ LN L+ E L +IL EP+ +L KQ Sbjct 308 PSD--------------------LLPELQGRLPIRVELNPLTREDLRRILTEPEASLIKQ 347 Query 337 YQALFNLEGVDLEFRDEALDAIAKKAM---AR--KTGARGLRSIVEAALLDTMYDLP 388 Y AL E V LE D+A+DA+A A+ AR GAR L++++E L + + P Sbjct 348 YIALMATEEVHLEITDDAIDALADIAVDLNARIENIGARRLQTVMERVLDEISFTAP 404 Score = 90.1 bits (222), Expect = 7e-20, Method: Compositional matrix adjust. Identities = 46/102 (45%), Positives = 65/102 (64%), Gaps = 1/102 (1%) Query 66 TPHEIRNHLDDYVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGK 125 +P E + LD ++IGQ AK+ +A+A+ N ++R + D E+ NIL+IGPTG GK Sbjct 6 SPRETVSELDRFIIGQSDAKRSVAIALRNRWRR-QQLDGPMRDEVMPKNILMIGPTGVGK 64 Query 126 TLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQ 167 T +A LA+L PF +AT TE GYVG DVE II+ L++ Sbjct 65 TGIARRLAKLAGAPFVKVEATKFTEVGYVGRDVEQIIRDLVE 106 > sp|Q12IT8|HSLU_SHEDO ATP-dependent protease ATPase subunit HslU OS=Shewanella denitrificans (strain OS217 / ATCC BAA-1090 / DSM 15013) OX=318161 GN=hslU PE=3 SV=1 Length=441 Score = 94.0 bits (232), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 47/100 (47%), Positives = 67/100 (67%), Gaps = 1/100 (1%) Query 66 TPHEIRNHLDDYVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGK 125 TP EI + LD ++IGQ +AK+ +AVA+ N ++R++ E+ NIL+IGPTG GK Sbjct 5 TPREIVHELDAHIIGQNKAKRAVAVALRNRWRRMQLAPDLRQ-EVTPKNILMIGPTGVGK 63 Query 126 TLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKL 165 T +A LA+L + PF +AT TE GYVG++VE II+ L Sbjct 64 TEIARRLAKLANAPFIKVEATKFTEVGYVGKEVEQIIRDL 103 Score = 86.3 bits (212), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 69/215 (32%), Positives = 94/215 (44%), Gaps = 59/215 (27%) Query 177 QRGIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFL 236 Q GIV++DEIDKI ++ + DVS EGVQ+ LL L+EG + KH Sbjct 247 QNGIVFLDEIDKICKRGETSG--PDVSREGVQRDLLPLVEGCTVST------KHGM---- 294 Query 237 QVDTSKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLI 296 V T ILFI GAF +P DLI Sbjct 295 -VKTDHILFIASGAFQ------------------------------------MSKPSDLI 317 Query 297 KFGLIPEFIGRLPVVATLNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALD 356 PE GRLP+ L+ L+ +IL EP +LT+QY AL EGV + F + +D Sbjct 318 -----PELQGRLPIRVELDPLTANDFKRILTEPNASLTEQYIALMATEGVTISFLESGID 372 Query 357 AIAKKAM-----ARKTGARGLRSIVEAALLDTMYD 386 +A+ A GAR L +++E + D +D Sbjct 373 KLAEAAWQVNERTENIGARRLHTVMEKLMEDISFD 407 > sp|Q16CY2|HSLU_ROSDO ATP-dependent protease ATPase subunit HslU OS=Roseobacter denitrificans (strain ATCC 33942 / OCh 114) OX=375451 GN=hslU PE=3 SV=1 Length=435 Score = 93.6 bits (231), Expect = 6e-21, Method: Compositional matrix adjust. Identities = 78/235 (33%), Positives = 106/235 (45%), Gaps = 64/235 (27%) Query 177 QRGIVYIDEIDKISRKSDNPSITR--DVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQE 234 Q GIV++DEIDK+ KSD TR DVS EGVQ+ LL LIEGT + KH Sbjct 241 QNGIVFLDEIDKVCAKSD----TRGGDVSREGVQRDLLPLIEGTTVST------KHGP-- 288 Query 235 FLQVDTSKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPED 294 + T ILFI GAF +P D Sbjct 289 ---IKTDHILFIASGAFH------------------------------------IAKPSD 309 Query 295 LIKFGLIPEFIGRLPVVATLNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEA 354 L+ PE GRLP+ L L+EE ++IL E NALT QY AL E V + F ++ Sbjct 310 LL-----PELQGRLPIRVELRALTEEDFVRILTETDNALTLQYTALMGTEEVTVSFTEDG 364 Query 355 LDAIAKKAM-----ARKTGARGLRSIVEAALLDTMYDLPSMEDVEKVVIDESVID 404 + A+AK A GAR L +++E + + P E++++D + +D Sbjct 365 IAALAKIAAEVNQSVENIGARRLYTVMERVFEELSFSAPDRAG-EEIIVDAAFVD 418 Score = 93.2 bits (230), Expect = 7e-21, Method: Compositional matrix adjust. Identities = 48/104 (46%), Positives = 65/104 (63%), Gaps = 1/104 (1%) Query 66 TPHEIRNHLDDYVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGK 125 TP EI + LD ++IGQ AK+ +AVA+ N ++R + D E+ NIL+IGPTG GK Sbjct 5 TPREIVSELDRFIIGQNDAKRAVAVALRNRWRRKQLADDLRD-EVYPKNILMIGPTGVGK 63 Query 126 TLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKC 169 T ++ LA+L PF +AT TE GYVG DVE II+ L+ Sbjct 64 TEISRRLAKLARAPFLKVEATKFTEVGYVGRDVEQIIRDLVDNA 107 > sp|P57968|HSLU_PASMU ATP-dependent protease ATPase subunit HslU OS=Pasteurella multocida (strain Pm70) OX=272843 GN=hslU PE=3 SV=1 Length=443 Score = 93.2 bits (230), Expect = 8e-21, Method: Compositional matrix adjust. Identities = 80/233 (34%), Positives = 107/233 (46%), Gaps = 62/233 (27%) Query 177 QRGIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFL 236 Q GIV+IDEIDKI +K + DVS EGVQ+ LL L+EGT + KH Sbjct 249 QNGIVFIDEIDKICKKGEYSGA--DVSREGVQRDLLPLVEGTTVST------KHGM---- 296 Query 237 QVDTSKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQV-EPEDL 295 V T ILFI GAF QV P DL Sbjct 297 -VKTDHILFIASGAF-------------------------------------QVARPSDL 318 Query 296 IKFGLIPEFIGRLPVVATLNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEAL 355 I PE GRLP+ L+ LS +IL EP +LT+QY+AL EGV++EF E++ Sbjct 319 I-----PELQGRLPIRVELSALSAVDFERILTEPNASLTEQYKALMATEGVNIEFTGESI 373 Query 356 DAIAKKAM-----ARKTGARGLRSIVEAALLDTMYDLPSMEDVEKVVIDESVI 403 IA+ A GAR L +++E + ++ M+ + V IDE+ + Sbjct 374 KKIAEAAFRVNEKTENIGARRLHTVMERLMDKISFNASDMQG-QVVRIDEAYV 425 Score = 92.4 bits (228), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 45/100 (45%), Positives = 68/100 (68%), Gaps = 1/100 (1%) Query 66 TPHEIRNHLDDYVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGK 125 TP EI + LD ++IGQ AK+ +A+A+ N ++R++ + E+ NIL+IGPTG GK Sbjct 5 TPREIVSELDQHIIGQADAKRAVAIALRNRWRRMQLQEPLRH-EVTPKNILMIGPTGVGK 63 Query 126 TLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKL 165 T +A LA+L + PF +AT TE GYVG++V++II+ L Sbjct 64 TEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDL 103 > tr|A5FYD7|A5FYD7_ACICJ ATP-dependent protease ATPase subunit HslU OS=Acidiphilium cryptum (strain JF-5) OX=349163 GN=hslU PE=3 SV=1 Length=439 Score = 92.0 bits (227), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 46/104 (44%), Positives = 69/104 (66%), Gaps = 5/104 (5%) Query 66 TPHEIRNHLDDYVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGV--ELGKSNILLIGPTGS 123 TP EI + LD +++GQ+ AK+ +A+A+ N ++R + G+ E+ NIL+IGPTG Sbjct 8 TPREIVSELDRFIVGQQDAKRAVAIALRNRWRRQQ---LPEGLREEVVPKNILMIGPTGC 64 Query 124 GKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQ 167 GKT +A LA+L PF +AT TE GYVG DVE+I++ L++ Sbjct 65 GKTEIARRLAKLAQAPFIKVEATKFTEVGYVGRDVESIVRDLVE 108 Score = 83.6 bits (205), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 81/251 (32%), Positives = 113/251 (45%), Gaps = 58/251 (23%) Query 169 CDYDVQKAQRGIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGR 228 D + GIV++DEIDKI ++++ DVS EGVQ+ LL LIEGT + Sbjct 235 ADARLHAETHGIVFLDEIDKICARTESGFRGGDVSREGVQRDLLPLIEGTTVST------ 288 Query 229 KHPQQEFLQVDTSKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLA 288 ++ V T ILFI GAF V SD Sbjct 289 -----KYGPVKTDHILFIASGAFH---------------------VAKPSD--------- 313 Query 289 QVEPEDLIKFGLIPEFIGRLPVVATLNELSEEALIQILKEPKNALTKQYQALFNLEGVDL 348 L+PE GRLP+ L LS E +IL EP+++L KQY AL E VDL Sbjct 314 -----------LLPELQGRLPIRVELASLSREDFRRILTEPEHSLLKQYVALMKTENVDL 362 Query 349 EFRDEALDAIAKKAM-----ARKTGARGLRSIVEAALLDTMYDLPSMEDVEKVVIDESVI 403 F D+A+DA+A A GAR L +++E LL+ + + E V +D +++ Sbjct 363 HFTDDAVDAVAALAADINDRVENIGARRLATVLE-RLLEEISFAATDRAGETVTVDAALV 421 Query 404 DGQSKPLLIYG 414 + + PL G Sbjct 422 NDKVAPLAARG 432 > sp|P43773|HSLU_HAEIN ATP-dependent protease ATPase subunit HslU OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) OX=71421 GN=hslU PE=1 SV=1 Length=444 Score = 92.0 bits (227), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 45/100 (45%), Positives = 68/100 (68%), Gaps = 1/100 (1%) Query 66 TPHEIRNHLDDYVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGK 125 TP EI + LD ++IGQ AK+ +A+A+ N ++R++ + E+ NIL+IGPTG GK Sbjct 5 TPREIVSELDQHIIGQADAKRAVAIALRNRWRRMQLQEPLRH-EVTPKNILMIGPTGVGK 63 Query 126 TLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKL 165 T +A LA+L + PF +AT TE GYVG++V++II+ L Sbjct 64 TEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDL 103 Score = 87.8 bits (216), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 73/207 (35%), Positives = 93/207 (45%), Gaps = 61/207 (29%) Query 177 QRGIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFL 236 Q GIV+IDEIDKI +K + DVS EGVQ+ LL L+EG+ + KH Sbjct 250 QNGIVFIDEIDKICKKGEYSGA--DVSREGVQRDLLPLVEGSTVST------KHGM---- 297 Query 237 QVDTSKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQV-EPEDL 295 V T ILFI GAF QV P DL Sbjct 298 -VKTDHILFIASGAF-------------------------------------QVARPSDL 319 Query 296 IKFGLIPEFIGRLPVVATLNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEAL 355 I PE GRLP+ L LS +IL EP +LT+QY+AL EGV++ F +A+ Sbjct 320 I-----PELQGRLPIRVELTALSAADFERILTEPHASLTEQYKALMATEGVNIAFTTDAV 374 Query 356 DAIAKKAM-----ARKTGARGLRSIVE 377 IA+ A GAR L +++E Sbjct 375 KKIAEAAFRVNEKTENIGARRLHTVME 401 > tr|Q3SFW1|Q3SFW1_THIDA ATP-dependent protease ATPase subunit HslU OS=Thiobacillus denitrificans (strain ATCC 25259) OX=292415 GN=hslU PE=3 SV=1 Length=438 Score = 86.7 bits (213), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 79/236 (33%), Positives = 102/236 (43%), Gaps = 66/236 (28%) Query 177 QRGIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFL 236 Q GIV++DEIDKI+ +SD DVS +GVQ+ LL LIEGT + ++ Sbjct 245 QNGIVFLDEIDKIATRSDAHG--SDVSRQGVQRDLLPLIEGTTVST-----------KYG 291 Query 237 QVDTSKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLI 296 V T ILFI GAF L K P DLI Sbjct 292 MVKTDHILFIASGAF-HLSK-----------------------------------PSDLI 315 Query 297 KFGLIPEFIGRLPVVATLNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALD 356 PE GRLP+ L LS + +IL LT+QY+AL EGV L F + + Sbjct 316 -----PELQGRLPIRVELQALSVDDFERILTATDACLTRQYEALLATEGVALRFTEGGIR 370 Query 357 AIAKKAM-----ARKTGARGLRSIVEAALLDTMYDLPSMEDVEKVVIDESVIDGQS 407 IA+ A GAR L +++E L D +D S V E VID ++ Sbjct 371 RIAEIAFEVNERTENIGARRLHTVMEKLLEDISFDAGS-------VTGEHVIDAEA 419 Score = 83.2 bits (204), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 46/104 (44%), Positives = 67/104 (64%), Gaps = 1/104 (1%) Query 66 TPHEIRNHLDDYVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGK 125 TP EI + LD +++GQ AK+ +AVA+ N ++R + + E+ NIL+IGPTG GK Sbjct 2 TPKEIVHELDKHIVGQAAAKRAVAVALRNRWRRQQVAEPLRQ-EITPKNILMIGPTGVGK 60 Query 126 TLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKC 169 T +A LARL + PF +AT TE GYVG DV+ I++ L++ Sbjct 61 TEIARRLARLANAPFIKIEATKFTEVGYVGRDVDTIVRDLMETA 104 > sp|Q168A2|RUVB_ROSDO Holliday junction branch migration complex subunit RuvB OS=Roseobacter denitrificans (strain ATCC 33942 / OCh 114) OX=375451 GN=ruvB PE=3 SV=1 Length=340 Score = 45.4 bits (106), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 40/149 (27%), Positives = 68/149 (46%), Gaps = 31/149 (21%) Query 52 IKEVAPHRERSALPTPHE--IRNHLDDYVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVE 109 + ++ P LP H+ +R + +GQ +A+ L V + + +R G+ + Sbjct 1 MSDIDPTVRADPLPEDHDRALRPQMLSEFVGQAEARANLKVFIASARQR---GEAMD--- 54 Query 110 LGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKC 169 + L GP G GKT LA+ +AR L V F M L +AG D+ I+ L Sbjct 55 ----HTLFHGPPGLGKTTLAQIMARELGVGFRMTSGPVLAKAG----DLAAILTNL---- 102 Query 170 DYDVQKAQRGIVYIDEIDKISRKSDNPSI 198 +R +++IDEI ++ NP++ Sbjct 103 ------EKRDVLFIDEIHRL-----NPAV 120 > tr|A0A0H3LXZ4|A0A0H3LXZ4_BARHE ATP-dependent zinc metalloprotease FtsH OS=Bartonella henselae (strain ATCC 49882 / DSM 28221 / CCUG 30454 / Houston 1) OX=283166 GN=ftsH PE=3 SV=1 Length=715 Score = 45.4 bits (106), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 27/77 (35%), Positives = 40/77 (52%), Gaps = 6/77 (8%) Query 115 ILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQ 174 +LL+GP G+GKTLLA ++A +VPF + E +VG + Q + Sbjct 192 VLLVGPPGTGKTLLARSVAGEANVPFFTISGSDFVEM-FVGVGASRVRDMFEQ-----AK 245 Query 175 KAQRGIVYIDEIDKISR 191 K I++IDEID + R Sbjct 246 KNAPCIIFIDEIDAVGR 262 > tr|A5FVF9|A5FVF9_ACICJ ATP-dependent zinc metalloprotease FtsH OS=Acidiphilium cryptum (strain JF-5) OX=349163 GN=ftsH PE=3 SV=1 Length=641 Score = 44.7 bits (104), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 27/77 (35%), Positives = 39/77 (51%), Gaps = 6/77 (8%) Query 115 ILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQ 174 +LL+GP G+GKTLLA +A +VPF + E +VG + Q + Sbjct 193 VLLVGPPGTGKTLLARAIAGEANVPFFTISGSDFVEM-FVGVGASRVRDMFEQG-----K 246 Query 175 KAQRGIVYIDEIDKISR 191 K I++IDEID + R Sbjct 247 KNAPCIIFIDEIDAVGR 263 > sp|Q6G5R1|RUVB_BARHE Holliday junction branch migration complex subunit RuvB OS=Bartonella henselae (strain ATCC 49882 / DSM 28221 / CCUG 30454 / Houston 1) OX=283166 GN=ruvB PE=3 SV=1 Length=361 Score = 43.5 bits (101), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 32/132 (24%), Positives = 61/132 (46%), Gaps = 28/132 (21%) Query 63 ALPTPHE----IRNHLDDYVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLI 118 A+P P++ +R + D IGQE A+ L + + + + + ++L + Sbjct 12 AVPLPNDPDRSLRPQVLDDFIGQEAARANLKIFI----------EAAKARQEALDHVLFV 61 Query 119 GPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQR 178 GP G GKT L++ +A+ L V F + +AG + + N+ +R Sbjct 62 GPPGLGKTTLSQIMAKELGVNFRSTSGPVIAKAGDLAALLTNL--------------EER 107 Query 179 GIVYIDEIDKIS 190 +++IDEI ++S Sbjct 108 DVLFIDEIHRLS 119 Lambda K H a alpha 0.316 0.135 0.378 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 1562939664 Database: User specified sequence set (Input: sum.fasta). Posted date: Unknown Number of letters in database: 6,841,464 Number of sequences in database: 21,256 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40