******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.5.1 (Release date: Sun Jan 29 10:33:12 2023 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../p500.txt CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ 3929526:3929626 1.0000 100 830632:830732 1.0000 100 3686104:3686204 1.0000 100 3349726:3349826 1.0000 100 529063:529163 1.0000 100 4208487:4208587 1.0000 100 1493831:1493931 1.0000 100 4002709:4002809 1.0000 100 1141073:1141173 1.0000 100 2083296:2083396 1.0000 100 2304092:2304192 1.0000 100 3454400:3454500 1.0000 100 4401977:4402077 1.0000 100 1907902:1908002 1.0000 100 3474422:3474522 1.0000 100 2163866:2163966 1.0000 100 4123482:4123582 1.0000 100 1683320:1683420 1.0000 100 358782:358882 1.0000 100 4390696:4390796 1.0000 100 1252014:1252114 1.0000 100 4145962:4146062 1.0000 100 3848807:3848907 1.0000 100 1895059:1895159 1.0000 100 248375:248475 1.0000 100 4220058:4220158 1.0000 100 2045264:2045364 1.0000 100 1601095:1601195 1.0000 100 934147:934247 1.0000 100 2411179:2411279 1.0000 100 1445099:1445199 1.0000 100 2726767:2726867 1.0000 100 790447:790547 1.0000 100 8510:8610 1.0000 100 2955942:2956042 1.0000 100 179942:180042 1.0000 100 2443225:2443325 1.0000 100 2760290:2760390 1.0000 100 1029095:1029195 1.0000 100 1837497:1837597 1.0000 100 2762492:2762592 1.0000 100 3597155:3597255 1.0000 100 3010306:3010406 1.0000 100 2165181:2165281 1.0000 100 2181959:2182059 1.0000 100 3402047:3402147 1.0000 100 4382957:4383057 1.0000 100 1035131:1035231 1.0000 100 2780095:2780195 1.0000 100 3532372:3532472 1.0000 100 4580569:4580669 1.0000 100 3473417:3473517 1.0000 100 4380238:4380338 1.0000 100 2672801:2672901 1.0000 100 4237122:4237222 1.0000 100 1484303:1484403 1.0000 100 4266530:4266630 1.0000 100 4422795:4422895 1.0000 100 4286422:4286522 1.0000 100 56547:56647 1.0000 100 274964:275064 1.0000 100 611033:611133 1.0000 100 2120212:2120312 1.0000 100 3071859:3071959 1.0000 100 3383970:3384070 1.0000 100 348685:348785 1.0000 100 972202:972302 1.0000 100 1294141:1294241 1.0000 100 3797075:3797175 1.0000 100 3720824:3720924 1.0000 100 116949:117049 1.0000 100 4110598:4110698 1.0000 100 3932004:3932104 1.0000 100 1715516:1715616 1.0000 100 534321:534421 1.0000 100 880893:880993 1.0000 100 4501457:4501557 1.0000 100 4021198:4021298 1.0000 100 590486:590586 1.0000 100 2979433:2979533 1.0000 100 3523677:3523777 1.0000 100 2410416:2410516 1.0000 100 3931100:3931200 1.0000 100 1489901:1490001 1.0000 100 4090717:4090817 1.0000 100 1584433:1584533 1.0000 100 1528420:1528520 1.0000 100 4480428:4480528 1.0000 100 3569316:3569416 1.0000 100 3608147:3608247 1.0000 100 3308645:3308745 1.0000 100 2292711:2292811 1.0000 100 3256830:3256930 1.0000 100 842740:842840 1.0000 100 4089379:4089479 1.0000 100 3986545:3986645 1.0000 100 1887725:1887825 1.0000 100 3544189:3544289 1.0000 100 347491:347591 1.0000 100 3969374:3969474 1.0000 100 961766:961866 1.0000 100 4194282:4194382 1.0000 100 3822959:3823059 1.0000 100 1046119:1046219 1.0000 100 1338569:1338669 1.0000 100 4062768:4062868 1.0000 100 1336233:1336333 1.0000 100 3609137:3609237 1.0000 100 4178146:4178246 1.0000 100 1929656:1929756 1.0000 100 3748705:3748805 1.0000 100 1455407:1455507 1.0000 100 31385:31485 1.0000 100 2674626:2674726 1.0000 100 4430822:4430922 1.0000 100 2794997:2795097 1.0000 100 3350095:3350195 1.0000 100 707810:707910 1.0000 100 432101:432201 1.0000 100 2324526:2324626 1.0000 100 1911981:1912081 1.0000 100 4502530:4502630 1.0000 100 2916829:2916929 1.0000 100 2195447:2195547 1.0000 100 1777467:1777567 1.0000 100 1868130:1868230 1.0000 100 2457399:2457499 1.0000 100 4131490:4131590 1.0000 100 115622:115722 1.0000 100 1331038:1331138 1.0000 100 4224793:4224893 1.0000 100 4073851:4073951 1.0000 100 257557:257657 1.0000 100 240271:240371 1.0000 100 3934295:3934395 1.0000 100 845081:845181 1.0000 100 841845:841945 1.0000 100 463138:463238 1.0000 100 1572856:1572956 1.0000 100 838076:838176 1.0000 100 4030145:4030245 1.0000 100 600216:600316 1.0000 100 430500:430600 1.0000 100 348441:348541 1.0000 100 570751:570851 1.0000 100 2591254:2591354 1.0000 100 1166054:1166154 1.0000 100 897222:897322 1.0000 100 2654620:2654720 1.0000 100 1548914:1549014 1.0000 100 459205:459305 1.0000 100 3449864:3449964 1.0000 100 899846:899946 1.0000 100 2976234:2976334 1.0000 100 268235:268335 1.0000 100 680837:680937 1.0000 100 663479:663579 1.0000 100 3610733:3610833 1.0000 100 3519874:3519974 1.0000 100 4149302:4149402 1.0000 100 4579310:4579410 1.0000 100 4518669:4518769 1.0000 100 3924618:3924718 1.0000 100 712806:712906 1.0000 100 364096:364196 1.0000 100 2333845:2333945 1.0000 100 1234413:1234513 1.0000 100 3416778:3416878 1.0000 100 960064:960164 1.0000 100 932521:932621 1.0000 100 1187486:1187586 1.0000 100 2890412:2890512 1.0000 100 64708:64808 1.0000 100 2927398:2927498 1.0000 100 78608:78708 1.0000 100 1028605:1028705 1.0000 100 3528417:3528517 1.0000 100 613569:613669 1.0000 100 3599150:3599250 1.0000 100 3627614:3627714 1.0000 100 2889558:2889658 1.0000 100 2498859:2498959 1.0000 100 2465291:2465391 1.0000 100 2057990:2058090 1.0000 100 1008011:1008111 1.0000 100 2291680:2291780 1.0000 100 710445:710545 1.0000 100 3674508:3674608 1.0000 100 1154101:1154201 1.0000 100 3862556:3862656 1.0000 100 2455356:2455456 1.0000 100 1909391:1909491 1.0000 100 3342916:3343016 1.0000 100 3634836:3634936 1.0000 100 14615:14715 1.0000 100 3073512:3073612 1.0000 100 4007009:4007109 1.0000 100 3894392:3894492 1.0000 100 164119:164219 1.0000 100 2166884:2166984 1.0000 100 3522473:3522573 1.0000 100 2874367:2874467 1.0000 100 306331:306431 1.0000 100 4056544:4056644 1.0000 100 4576499:4576599 1.0000 100 3177338:3177438 1.0000 100 4550127:4550227 1.0000 100 329604:329704 1.0000 100 3332992:3333092 1.0000 100 2316423:2316523 1.0000 100 1227615:1227715 1.0000 100 3415990:3416090 1.0000 100 3005393:3005493 1.0000 100 937741:937841 1.0000 100 101206:101306 1.0000 100 1951759:1951859 1.0000 100 470754:470854 1.0000 100 3958116:3958216 1.0000 100 4293536:4293636 1.0000 100 3722621:3722721 1.0000 100 1292558:1292658 1.0000 100 924955:925055 1.0000 100 1487583:1487683 1.0000 100 3808965:3809065 1.0000 100 995299:995399 1.0000 100 1535482:1535582 1.0000 100 953307:953407 1.0000 100 44427:44527 1.0000 100 954716:954816 1.0000 100 3607406:3607506 1.0000 100 4551910:4552010 1.0000 100 3681124:3681224 1.0000 100 3498142:3498242 1.0000 100 2870457:2870557 1.0000 100 598088:598188 1.0000 100 218607:218707 1.0000 100 2579970:2580070 1.0000 100 2398572:2398672 1.0000 100 2275794:2275894 1.0000 100 631331:631431 1.0000 100 4001795:4001895 1.0000 100 3045070:3045170 1.0000 100 4236118:4236218 1.0000 100 656510:656610 1.0000 100 3442419:3442519 1.0000 100 3361355:3361455 1.0000 100 3289418:3289518 1.0000 100 1782153:1782253 1.0000 100 3607158:3607258 1.0000 100 1969269:1969369 1.0000 100 821010:821110 1.0000 100 2848482:2848582 1.0000 100 2852832:2852932 1.0000 100 3921095:3921195 1.0000 100 1021202:1021302 1.0000 100 1565550:1565650 1.0000 100 478004:478104 1.0000 100 1107822:1107922 1.0000 100 1408600:1408700 1.0000 100 4572434:4572534 1.0000 100 1447644:1447744 1.0000 100 3619713:3619813 1.0000 100 2322240:2322340 1.0000 100 2018407:2018507 1.0000 100 2914930:2915030 1.0000 100 925813:925913 1.0000 100 783181:783281 1.0000 100 603235:603335 1.0000 100 1276160:1276260 1.0000 100 3489108:3489208 1.0000 100 3033861:3033961 1.0000 100 1964333:1964433 1.0000 100 1250663:1250763 1.0000 100 527164:527264 1.0000 100 3607667:3607767 1.0000 100 1143615:1143715 1.0000 100 3815131:3815231 1.0000 100 542197:542297 1.0000 100 4491602:4491702 1.0000 100 2947446:2947546 1.0000 100 1904701:1904801 1.0000 100 715659:715759 1.0000 100 2289778:2289878 1.0000 100 965772:965872 1.0000 100 1152101:1152201 1.0000 100 3828029:3828129 1.0000 100 3930138:3930238 1.0000 100 4599122:4599222 1.0000 100 2502284:2502384 1.0000 100 349812:349912 1.0000 100 1578507:1578607 1.0000 100 3490561:3490661 1.0000 100 2568376:2568476 1.0000 100 3760393:3760493 1.0000 100 2468741:2468841 1.0000 100 3923538:3923638 1.0000 100 395401:395501 1.0000 100 4406325:4406425 1.0000 100 723567:723667 1.0000 100 617250:617350 1.0000 100 3509754:3509854 1.0000 100 2293818:2293918 1.0000 100 4570411:4570511 1.0000 100 3330675:3330775 1.0000 100 2419072:2419172 1.0000 100 3272886:3272986 1.0000 100 3344682:3344782 1.0000 100 4034884:4034984 1.0000 100 3267754:3267854 1.0000 100 656793:656893 1.0000 100 4611699:4611799 1.0000 100 3846290:3846390 1.0000 100 817375:817475 1.0000 100 3756547:3756647 1.0000 100 527941:528041 1.0000 100 4192161:4192261 1.0000 100 1956514:1956614 1.0000 100 4096698:4096798 1.0000 100 50296:50396 1.0000 100 3854961:3855061 1.0000 100 1403874:1403974 1.0000 100 3345795:3345895 1.0000 100 3200117:3200217 1.0000 100 351629:351729 1.0000 100 377208:377308 1.0000 100 4587971:4588071 1.0000 100 3125972:3126072 1.0000 100 3737032:3737132 1.0000 100 2450757:2450857 1.0000 100 2546557:2546657 1.0000 100 4130451:4130551 1.0000 100 2172689:2172789 1.0000 100 1743806:1743906 1.0000 100 1806225:1806325 1.0000 100 3660863:3660963 1.0000 100 2597835:2597935 1.0000 100 3141975:3142075 1.0000 100 2460079:2460179 1.0000 100 1921066:1921166 1.0000 100 2176099:2176199 1.0000 100 3310402:3310502 1.0000 100 12157:12257 1.0000 100 3495835:3495935 1.0000 100 4057777:4057877 1.0000 100 2097125:2097225 1.0000 100 3810198:3810298 1.0000 100 1247965:1248065 1.0000 100 2114502:2114602 1.0000 100 1254532:1254632 1.0000 100 807075:807175 1.0000 100 1059459:1059559 1.0000 100 3526684:3526784 1.0000 100 311304:311404 1.0000 100 3384510:3384610 1.0000 100 2749058:2749158 1.0000 100 3753497:3753597 1.0000 100 3027808:3027908 1.0000 100 3796413:3796513 1.0000 100 4553276:4553376 1.0000 100 297447:297547 1.0000 100 4204761:4204861 1.0000 100 3584044:3584144 1.0000 100 4060409:4060509 1.0000 100 157964:158064 1.0000 100 171923:172023 1.0000 100 4530201:4530301 1.0000 100 1012703:1012803 1.0000 100 2173954:2174054 1.0000 100 3061473:3061573 1.0000 100 2402893:2402993 1.0000 100 939110:939210 1.0000 100 2393248:2393348 1.0000 100 1300883:1300983 1.0000 100 4254225:4254325 1.0000 100 3978264:3978364 1.0000 100 1044292:1044392 1.0000 100 4038340:4038440 1.0000 100 2999690:2999790 1.0000 100 2354373:2354473 1.0000 100 2997013:2997113 1.0000 100 4569577:4569677 1.0000 100 2944507:2944607 1.0000 100 1627346:1627446 1.0000 100 1069694:1069794 1.0000 100 4605232:4605332 1.0000 100 2998610:2998710 1.0000 100 267316:267416 1.0000 100 892517:892617 1.0000 100 855904:856004 1.0000 100 1970104:1970204 1.0000 100 4581198:4581298 1.0000 100 1932678:1932778 1.0000 100 4310672:4310772 1.0000 100 1413491:1413591 1.0000 100 3104927:3105027 1.0000 100 1198248:1198348 1.0000 100 944576:944676 1.0000 100 4424023:4424123 1.0000 100 1593863:1593963 1.0000 100 520261:520361 1.0000 100 2567127:2567227 1.0000 100 4111046:4111146 1.0000 100 2024761:2024861 1.0000 100 4008426:4008526 1.0000 100 2576:2676 1.0000 100 2346557:2346657 1.0000 100 4102805:4102905 1.0000 100 1659812:1659912 1.0000 100 2981787:2981887 1.0000 100 502529:502629 1.0000 100 4167489:4167589 1.0000 100 3946573:3946673 1.0000 100 818233:818333 1.0000 100 3856365:3856465 1.0000 100 722308:722408 1.0000 100 3222719:3222819 1.0000 100 1110629:1110729 1.0000 100 386328:386428 1.0000 100 51636:51736 1.0000 100 2091173:2091273 1.0000 100 1509310:1509410 1.0000 100 2329849:2329949 1.0000 100 3492079:3492179 1.0000 100 4179853:4179953 1.0000 100 4568947:4569047 1.0000 100 2330397:2330497 1.0000 100 277892:277992 1.0000 100 681638:681738 1.0000 100 3144692:3144792 1.0000 100 1798054:1798154 1.0000 100 1937689:1937789 1.0000 100 943098:943198 1.0000 100 792062:792162 1.0000 100 2451791:2451891 1.0000 100 2544044:2544144 1.0000 100 3403344:3403444 1.0000 100 3149681:3149781 1.0000 100 550615:550715 1.0000 100 505224:505324 1.0000 100 3415106:3415206 1.0000 100 3233084:3233184 1.0000 100 3017972:3018072 1.0000 100 1704797:1704897 1.0000 100 3775379:3775479 1.0000 100 4547207:4547307 1.0000 100 4118992:4119092 1.0000 100 405084:405184 1.0000 100 2730475:2730575 1.0000 100 4005043:4005143 1.0000 100 1727169:1727269 1.0000 100 1520500:1520600 1.0000 100 4213459:4213559 1.0000 100 237667:237767 1.0000 100 3585366:3585466 1.0000 100 3646971:3647071 1.0000 100 2619349:2619449 1.0000 100 2029605:2029705 1.0000 100 4516273:4516373 1.0000 100 4348887:4348987 1.0000 100 2164258:2164358 1.0000 100 2177502:2177602 1.0000 100 3650042:3650142 1.0000 100 2408849:2408949 1.0000 100 2833190:2833290 1.0000 100 1575172:1575272 1.0000 100 2695843:2695943 1.0000 100 3444463:3444563 1.0000 100 3438072:3438172 1.0000 100 201146:201246 1.0000 100 1778569:1778669 1.0000 100 586848:586948 1.0000 100 264590:264690 1.0000 100 2941290:2941390 1.0000 100 543033:543133 1.0000 100 1409372:1409472 1.0000 100 3885827:3885927 1.0000 100 648479:648579 1.0000 100 182476:182576 1.0000 100 2731254:2731354 1.0000 100 1609068:1609168 1.0000 100 1787950:1788050 1.0000 100 1624392:1624492 1.0000 100 4076697:4076797 1.0000 100 4181771:4181871 1.0000 100 3421977:3422077 1.0000 100 2718216:2718316 1.0000 100 1072353:1072453 1.0000 100 3907282:3907382 1.0000 100 4429074:4429174 1.0000 100 2949123:2949223 1.0000 100 3849484:3849584 1.0000 100 4259305:4259405 1.0000 100 2290763:2290863 1.0000 100 4196355:4196455 1.0000 100 281619:281719 1.0000 100 1532115:1532215 1.0000 100 784944:785044 1.0000 100 709898:709998 1.0000 100 950166:950266 1.0000 100 1281076:1281176 1.0000 100 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme ../p500.txt -dna -nmotifs 5 -minw 6 -maxw 30 model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 6 maxw= 30 nsites: minsites= 2 maxsites= 500 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 50000 N= 500 sample: seed= 0 hsfrac= 0 searchsize= 50000 norand= no csites= 1000 Letter frequencies in dataset: A 0.242 C 0.266 G 0.262 T 0.23 Background letter frequencies (from file dataset with add-one prior applied): A 0.242 C 0.266 G 0.262 T 0.23 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF SCWGSYSRCSGNVCTGSTGSYCGMCCTG MEME-1 width = 28 sites = 55 llr = 595 E-value = 1.8e-014 ******************************************************************************** -------------------------------------------------------------------------------- Motif SCWGSYSRCSGNVCTGSTGSYCGMCCTG MEME-1 Description -------------------------------------------------------------------------------- Simplified A 11311::32:232:::11:21:14::2: pos.-specific C 46215351541326123::326146712 probability G 4217415414724217419523813:16 matrix T 1141:6:121:2228118::52111262 bits 2.1 1.9 1.7 1.5 * Relative 1.3 * Entropy 1.1 * ** * (15.6 bits) 0.8 * ** * ** ** * * 0.6 * ** * *** ** ** **** 0.4 ** **** ** *** *** ******* 0.2 *********** *************** 0.0 ---------------------------- Multilevel CCTGCTGGCCGCGCTGGTGGTCGCCCTG consensus G A GCCATG ACT C CCG AGTAC sequence TA A -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SCWGSYSRCSGNVCTGSTGSYCGMCCTG MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- ---------------------------- 2916829:2916929 47 3.54e-10 CCGTCACCCC GCAGGCGGGTGAGCTGCTGATCGCCCTG CAACCGCCCA 1911981:1912081 2 1.27e-09 T GCTGGCGGGCATTCTGGTGATCGCCCTG ATCGCCTTCA 395401:395501 24 3.38e-08 AGCGCACAGG CCAGGCGGCGGGTTTTGTGGTCGCCCAT CCCGAGATGG 3345795:3345895 37 8.72e-08 TTTGTCTGCT GCTGCTGGCCGGTTTCTGGCTGGCCCTG ACCGCCCGCA 3495835:3495935 9 1.46e-07 ATCGTTGG CAAGCTGACTGCGTTGCTGGATGACTTC AAGGCAACCC 3330675:3330775 26 1.66e-07 TTACCCCCGA GCAAGCCGCCGAACGGCTGCGCGCCCTG AGCCCCATTC 3454400:3454500 69 1.66e-07 GCGCTGATGC CCTGCTGACGAGTCTGGTGCAGGAGCAT GGGG 3449864:3449964 33 1.88e-07 TATATCTGCT GCTCGTCCTCGCCTTGATGGTCTACCTG CTGCGTGCAC 311304:311404 35 2.12e-07 TGGTGAGCGA GGCGGCCGCCGATGTGCTGGGGGCGCTG CAAACCCATT 306331:306431 26 2.12e-07 GCCTCATCCA CTACGTCATCGGGCTGGTGATCGCCTTT GTCGCCGCCT 4179853:4179953 46 3.87e-07 ACTATTTCCA CTGGCTGACGGCCCGGGTGGCCGTCCAG TGACCACAAA 4286422:4286522 3 3.87e-07 CG TCTGCTGACGGAACTTGTGACCGATTTC AGTGACCAAC 502529:502629 59 4.35e-07 TTATGAATAG CAAGATCAGTGGCCTGCTGAAGGCCCTG AAAGGAGAGC 600216:600316 15 4.35e-07 ACCATCTGCC ACCGCTGGCAGAGCTGGAGGCCGAGCTG GCGCGGGTGC 2398572:2398672 48 4.89e-07 AGTATGTGGC GCTGGCGGTGGTGTCCCTGCTTGTCCTG ATCATCGTGG 4502530:4502630 8 5.49e-07 GCGAGGG GCTGCCGGTGGAGCGGGTGGCCGACGAG ATTGGCACCA 1609068:1609168 29 8.61e-07 CCCCCCTTCA TGCGGTCACGGCCCTGTTGCTGGCGCCG GTCTGTGGCG 3608147:3608247 7 1.07e-06 CGCCCA GCTGCCCTCCGGTCTCTGGCTCGCCCTC ACTGCCGAGC 3934295:3934395 30 1.19e-06 CGCTGGTGCT CGGCACCACGGCGCTGGTGGTGGACCGG GTTTACCGCC 2731254:2731354 41 1.33e-06 CGGATGCCCA GTTTGCCGGTGCGCTGGGGGCCGCCCTG TTCGGTGCCC 470754:470854 33 1.33e-06 ACTACGCCAG CCTGCCCGCCGAACTGTTGCCCCAGCGC GAGCGAGTGA 4021198:4021298 6 1.33e-06 CTCAA TCTGGTGACCGTGGTGGTGGCTGTGCCC AAGGCGATCC 2780095:2780195 18 1.33e-06 TCGTCCACTT GCAGCTCACCGGATTTGTGATGGGTTTG TCGTCGGCTT 1141073:1141173 8 1.64e-06 CTCATGA CCTGCTGGAGATGCTGCATATCGACCGG GTGATCCCCT 3862556:3862656 8 1.83e-06 GCAGTGC CCGTGTGGCCGCGCGGCTGGTTCATCTG TTGACCCGTT 348685:348785 18 1.83e-06 AAGCCTGCCA GATGCGCTGGCAACTGGTGGCCGAGCTG CAACAGGCCA 2166884:2166984 44 2.25e-06 ACGCCTATAA ACAGGTGCTGGCGGTGATGGACCCGCTG CAACTGCTGA 478004:478104 37 2.75e-06 GCCTGAGTGT GACGGGCGCGGCCCTGATGGGCGTGCTT TATTTCGTGA 4089379:4089479 14 3.04e-06 TTGGGTTGCT ACTGGTGCCGCTGTTTCTGACCGCGTTG CCAAGCTGAT 3796413:3796513 7 3.71e-06 GGGGCT GCTGCTGTTCGTTCTGGACGGTGCCTTG GTCTGGTTGG 1143615:1143715 57 4.09e-06 TGCGCGACAT TCTGACCACGATTTCGGTGGTGGCTCTG GTCGGGACGC 3523677:3523777 44 4.50e-06 TCGAGTTCTT CAATCTGACTCAGGGCGTGGTCGCCCTG CACCGCGGTT 1837497:1837597 71 4.50e-06 TGGTCGGTGG CCAGCCGCTGGGGCCGCTGCTCAGCCTG TA 2275794:2275894 12 4.96e-06 CCCTCGCCCT GTTGCTCAACCTGCTGCTGACGGCCTGT CGTGGCCACA 821010:821110 56 5.99e-06 GCGTGCGGGT GCATCCCGCCGTACTCAAGCTGGCCCAT GCCGACAAGG 3104927:3105027 37 7.22e-06 CCTGCCGATT CGATGTGATTGCGTTCGAGGGCGACCAG CCAGCCTGGA 3924618:3924718 50 7.22e-06 AAGCCTCCAG CCCGCTCACCGATTTTCTGGGGGCGTTA TGAGTCATGA 4424023:4424123 7 7.92e-06 GCGGGA GCGGATCAACGCCTTCCTGCGTGACCAC CAGTTGCAGC 2730475:2730575 49 1.14e-05 CCGACAAGGG GCAACTGGCAACCCGGCTGGCCGCCTTT ATCGAAATGC 4145962:4146062 5 1.24e-05 TCGC TCTGGCCGAGGGAGCGCTGGCCCACCAG GCCATCGAAG 3489108:3489208 32 1.36e-05 TCACCCCGGC GGCCATCTCCATCCTGCTGGTTCACCTG AAAAAACACG 4073851:4073951 30 1.36e-05 ACGCCTTGCA GTTGCTGGATGAAGTGAAGTTCGACTTG TAATTCAGAT 2889558:2889658 71 1.48e-05 GCAGTGTGAA TCCGATGATGCCAGTGATGCAGGATCTG CC 542197:542297 13 1.61e-05 TCGACAGTTA CAAGATCGATCAGCTGCTGGTTACCCGG GTCGAACCGG 4581198:4581298 35 1.75e-05 GTTTCAAACC GGTGCGCCGCGCACTGGGGATCGAGTAG ACCATGCCAT 3342916:3343016 26 1.91e-05 ACCTCGTCTA CCGGCTGCGCATCGTGGTGCAGGACCCC GACCCGGCCC 2290763:2290863 42 2.08e-05 GCTTCAACTT CCTGGCCGACGTGCTCTACGTCTTCCTG GATCCCCGTC 51636:51736 20 2.26e-05 TCTCCTCTCG CCTCGGCGGCGCCGTGATGCTGATCCTG GCCACCGCCC 2833190:2833290 2 2.45e-05 G CGAACTGCAGCCGCTGGTGCACTCCCTC AACGAGCAGC 4181771:4181871 66 2.66e-05 AGCATCTGGC CAAGGTCAACGACCTGAAGAAGGAGTAC CACAAAT 2591254:2591354 21 2.66e-05 TGGAGCTGTG CCAGCTCTCGGCCTTTTTTGGCGACCCC ACCCTCATCA 386328:386428 5 3.13e-05 CGGT CGGGCGGGTGGCATGGCTGCCCGCCCCT TTCTCACTGT 3272886:3272986 18 3.67e-05 GCCATGTCGA CCCGCTGATCCGCCGCTGGCTCGGCCTG CGAGATCACT 2450757:2450857 53 3.96e-05 AGCAGCCAAA GCAGGCCGCGAATCTTGTGCGCCTTCAT TTCAGTCAGG 4001795:4001895 8 4.63e-05 CCGCCAT CGCCGTGGTGATGCTGCTGATTTCGTTC ATTTTACTAC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SCWGSYSRCSGNVCTGSTGSYCGMCCTG MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- 2916829:2916929 3.5e-10 46_[+1]_26 1911981:1912081 1.3e-09 1_[+1]_71 395401:395501 3.4e-08 23_[+1]_49 3345795:3345895 8.7e-08 36_[+1]_36 3495835:3495935 1.5e-07 8_[+1]_64 3330675:3330775 1.7e-07 25_[+1]_47 3454400:3454500 1.7e-07 68_[+1]_4 3449864:3449964 1.9e-07 32_[+1]_40 311304:311404 2.1e-07 34_[+1]_38 306331:306431 2.1e-07 25_[+1]_47 4179853:4179953 3.9e-07 45_[+1]_27 4286422:4286522 3.9e-07 2_[+1]_70 502529:502629 4.4e-07 58_[+1]_14 600216:600316 4.4e-07 14_[+1]_58 2398572:2398672 4.9e-07 47_[+1]_25 4502530:4502630 5.5e-07 7_[+1]_65 1609068:1609168 8.6e-07 28_[+1]_44 3608147:3608247 1.1e-06 6_[+1]_66 3934295:3934395 1.2e-06 29_[+1]_43 2731254:2731354 1.3e-06 40_[+1]_32 470754:470854 1.3e-06 32_[+1]_40 4021198:4021298 1.3e-06 5_[+1]_67 2780095:2780195 1.3e-06 17_[+1]_55 1141073:1141173 1.6e-06 7_[+1]_65 3862556:3862656 1.8e-06 7_[+1]_65 348685:348785 1.8e-06 17_[+1]_55 2166884:2166984 2.2e-06 43_[+1]_29 478004:478104 2.8e-06 36_[+1]_36 4089379:4089479 3e-06 13_[+1]_59 3796413:3796513 3.7e-06 6_[+1]_66 1143615:1143715 4.1e-06 56_[+1]_16 3523677:3523777 4.5e-06 43_[+1]_29 1837497:1837597 4.5e-06 70_[+1]_2 2275794:2275894 5e-06 11_[+1]_61 821010:821110 6e-06 55_[+1]_17 3104927:3105027 7.2e-06 36_[+1]_36 3924618:3924718 7.2e-06 49_[+1]_23 4424023:4424123 7.9e-06 6_[+1]_66 2730475:2730575 1.1e-05 48_[+1]_24 4145962:4146062 1.2e-05 4_[+1]_68 3489108:3489208 1.4e-05 31_[+1]_41 4073851:4073951 1.4e-05 29_[+1]_43 2889558:2889658 1.5e-05 70_[+1]_2 542197:542297 1.6e-05 12_[+1]_60 4581198:4581298 1.8e-05 34_[+1]_38 3342916:3343016 1.9e-05 25_[+1]_47 2290763:2290863 2.1e-05 41_[+1]_31 51636:51736 2.3e-05 19_[+1]_53 2833190:2833290 2.5e-05 1_[+1]_71 4181771:4181871 2.7e-05 65_[+1]_7 2591254:2591354 2.7e-05 20_[+1]_52 386328:386428 3.1e-05 4_[+1]_68 3272886:3272986 3.7e-05 17_[+1]_55 2450757:2450857 4e-05 52_[+1]_20 4001795:4001895 4.6e-05 7_[+1]_65 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SCWGSYSRCSGNVCTGSTGSYCGMCCTG MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF SCWGSYSRCSGNVCTGSTGSYCGMCCTG width=28 seqs=55 2916829:2916929 ( 47) GCAGGCGGGTGAGCTGCTGATCGCCCTG 1 1911981:1912081 ( 2) GCTGGCGGGCATTCTGGTGATCGCCCTG 1 395401:395501 ( 24) CCAGGCGGCGGGTTTTGTGGTCGCCCAT 1 3345795:3345895 ( 37) GCTGCTGGCCGGTTTCTGGCTGGCCCTG 1 3495835:3495935 ( 9) CAAGCTGACTGCGTTGCTGGATGACTTC 1 3330675:3330775 ( 26) GCAAGCCGCCGAACGGCTGCGCGCCCTG 1 3454400:3454500 ( 69) CCTGCTGACGAGTCTGGTGCAGGAGCAT 1 3449864:3449964 ( 33) GCTCGTCCTCGCCTTGATGGTCTACCTG 1 311304:311404 ( 35) GGCGGCCGCCGATGTGCTGGGGGCGCTG 1 306331:306431 ( 26) CTACGTCATCGGGCTGGTGATCGCCTTT 1 4179853:4179953 ( 46) CTGGCTGACGGCCCGGGTGGCCGTCCAG 1 4286422:4286522 ( 3) TCTGCTGACGGAACTTGTGACCGATTTC 1 502529:502629 ( 59) CAAGATCAGTGGCCTGCTGAAGGCCCTG 1 600216:600316 ( 15) ACCGCTGGCAGAGCTGGAGGCCGAGCTG 1 2398572:2398672 ( 48) GCTGGCGGTGGTGTCCCTGCTTGTCCTG 1 4502530:4502630 ( 8) GCTGCCGGTGGAGCGGGTGGCCGACGAG 1 1609068:1609168 ( 29) TGCGGTCACGGCCCTGTTGCTGGCGCCG 1 3608147:3608247 ( 7) GCTGCCCTCCGGTCTCTGGCTCGCCCTC 1 3934295:3934395 ( 30) CGGCACCACGGCGCTGGTGGTGGACCGG 1 2731254:2731354 ( 41) GTTTGCCGGTGCGCTGGGGGCCGCCCTG 1 470754:470854 ( 33) CCTGCCCGCCGAACTGTTGCCCCAGCGC 1 4021198:4021298 ( 6) TCTGGTGACCGTGGTGGTGGCTGTGCCC 1 2780095:2780195 ( 18) GCAGCTCACCGGATTTGTGATGGGTTTG 1 1141073:1141173 ( 8) CCTGCTGGAGATGCTGCATATCGACCGG 1 3862556:3862656 ( 8) CCGTGTGGCCGCGCGGCTGGTTCATCTG 1 348685:348785 ( 18) GATGCGCTGGCAACTGGTGGCCGAGCTG 1 2166884:2166984 ( 44) ACAGGTGCTGGCGGTGATGGACCCGCTG 1 478004:478104 ( 37) GACGGGCGCGGCCCTGATGGGCGTGCTT 1 4089379:4089479 ( 14) ACTGGTGCCGCTGTTTCTGACCGCGTTG 1 3796413:3796513 ( 7) GCTGCTGTTCGTTCTGGACGGTGCCTTG 1 1143615:1143715 ( 57) TCTGACCACGATTTCGGTGGTGGCTCTG 1 3523677:3523777 ( 44) CAATCTGACTCAGGGCGTGGTCGCCCTG 1 1837497:1837597 ( 71) CCAGCCGCTGGGGCCGCTGCTCAGCCTG 1 2275794:2275894 ( 12) GTTGCTCAACCTGCTGCTGACGGCCTGT 1 821010:821110 ( 56) GCATCCCGCCGTACTCAAGCTGGCCCAT 1 3104927:3105027 ( 37) CGATGTGATTGCGTTCGAGGGCGACCAG 1 3924618:3924718 ( 50) CCCGCTCACCGATTTTCTGGGGGCGTTA 1 4424023:4424123 ( 7) GCGGATCAACGCCTTCCTGCGTGACCAC 1 2730475:2730575 ( 49) GCAACTGGCAACCCGGCTGGCCGCCTTT 1 4145962:4146062 ( 5) TCTGGCCGAGGGAGCGCTGGCCCACCAG 1 3489108:3489208 ( 32) GGCCATCTCCATCCTGCTGGTTCACCTG 1 4073851:4073951 ( 30) GTTGCTGGATGAAGTGAAGTTCGACTTG 1 2889558:2889658 ( 71) TCCGATGATGCCAGTGATGCAGGATCTG 1 542197:542297 ( 13) CAAGATCGATCAGCTGCTGGTTACCCGG 1 4581198:4581298 ( 35) GGTGCGCCGCGCACTGGGGATCGAGTAG 1 3342916:3343016 ( 26) CCGGCTGCGCATCGTGGTGCAGGACCCC 1 2290763:2290863 ( 42) CCTGGCCGACGTGCTCTACGTCTTCCTG 1 51636:51736 ( 20) CCTCGGCGGCGCCGTGATGCTGATCCTG 1 2833190:2833290 ( 2) CGAACTGCAGCCGCTGGTGCACTCCCTC 1 4181771:4181871 ( 66) CAAGGTCAACGACCTGAAGAAGGAGTAC 1 2591254:2591354 ( 21) CCAGCTCTCGGCCTTTTTTGGCGACCCC 1 386328:386428 ( 5) CGGGCGGGTGGCATGGCTGCCCGCCCCT 1 3272886:3272986 ( 18) CCCGCTGATCCGCCGCTGGCTCGGCCTG 1 2450757:2450857 ( 53) GCAGGCCGCGAATCTTGTGCGCCTTCAT 1 4001795:4001895 ( 8) CGCCGTGGTGATGCTGCTGATTTCGTTC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SCWGSYSRCSGNVCTGSTGSYCGMCCTG MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 28 n= 36500 bayes= 11.0339 E= 1.8e-014 -215 71 61 -108 -92 121 -68 -134 44 -70 -126 80 -215 -129 151 -134 -92 83 61 -1243 -1243 21 -153 138 -1243 88 96 -1243 52 -107 74 -134 -56 83 -85 -8 -273 65 61 -66 -56 -87 140 -1243 8 30 -53 4 -27 -17 54 -34 -1243 117 -68 4 -1243 -187 -85 176 -1243 -70 144 -85 -73 37 54 -85 -73 -1243 -153 173 -1243 -287 182 -266 -15 21 80 -366 -73 -17 -68 98 -1243 108 6 -49 -215 -129 154 -166 66 71 -226 -85 -1243 126 -4 -108 -1243 148 -384 4 -27 -155 -153 143 -373 -41 124 -49 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SCWGSYSRCSGNVCTGSTGSYCGMCCTG MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 28 nsites= 55 E= 1.8e-014 0.054545 0.436364 0.400000 0.109091 0.127273 0.618182 0.163636 0.090909 0.327273 0.163636 0.109091 0.400000 0.054545 0.109091 0.745455 0.090909 0.127273 0.472727 0.400000 0.000000 0.000000 0.309091 0.090909 0.600000 0.000000 0.490909 0.509091 0.000000 0.345455 0.127273 0.436364 0.090909 0.163636 0.472727 0.145455 0.218182 0.036364 0.418182 0.400000 0.145455 0.163636 0.145455 0.690909 0.000000 0.254545 0.327273 0.181818 0.236364 0.200000 0.236364 0.381818 0.181818 0.000000 0.600000 0.163636 0.236364 0.000000 0.072727 0.145455 0.781818 0.000000 0.163636 0.709091 0.127273 0.145455 0.345455 0.381818 0.127273 0.145455 0.000000 0.090909 0.763636 0.000000 0.036364 0.927273 0.036364 0.218182 0.309091 0.454545 0.018182 0.145455 0.236364 0.163636 0.454545 0.000000 0.563636 0.272727 0.163636 0.054545 0.109091 0.763636 0.072727 0.381818 0.436364 0.054545 0.127273 0.000000 0.636364 0.254545 0.109091 0.000000 0.745455 0.018182 0.236364 0.200000 0.090909 0.090909 0.618182 0.018182 0.200000 0.618182 0.163636 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SCWGSYSRCSGNVCTGSTGSYCGMCCTG MEME-1 regular expression -------------------------------------------------------------------------------- [CG]C[TA]G[CG][TC][GC][GA][CT][CG]G[CAT][GCA][CT]TG[GC]TG[GCA][TC][CG]G[CA][CG][CT][TA][GC] -------------------------------------------------------------------------------- Time 96.06 secs. ******************************************************************************** ******************************************************************************** MOTIF SSBCYTTTTTTDTKY MEME-2 width = 15 sites = 44 llr = 449 E-value = 5.3e-013 ******************************************************************************** -------------------------------------------------------------------------------- Motif SSBCYTTTTTTDTKY MEME-2 Description -------------------------------------------------------------------------------- Simplified A :1:::::::::4:11 pos.-specific C 543751:::12::23 probability G 3343:::12::4:42 matrix T 213:48a98982a34 bits 2.1 * 1.9 * * 1.7 ** * * 1.5 **** * Relative 1.3 ***** * Entropy 1.1 * ****** * (14.7 bits) 0.8 ******** * 0.6 ******** * 0.4 * *********** 0.2 *************** 0.0 --------------- Multilevel CCGCCTTTTTTATGT consensus GGTGT G TC sequence T C T -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SSBCYTTTTTTDTKY MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- --------------- 3442419:3442519 13 6.58e-08 CCCCGACACG GGGCCTTTTTTATGC TTCGCAGGAA 712806:712906 6 2.16e-07 GGGCA CGGCCTTTTTTGTAT TCGTTATTCT 845081:845181 78 2.64e-07 CGCCAAGGCG CCGGTTTTTTTATGC GTGCGATT 3607667:3607767 46 3.18e-07 GGCTTCGTGC CGGGTTTTTTTATGC GCCGAATTCA 784944:785044 40 7.29e-07 GGCATTGCGC CGCCCTTTTTTATCC TGGCAAAATT 3753497:3753597 39 7.29e-07 GAGGCTTCGG CCTCCTTTTTTATTA CCCCCGGATT 817375:817475 15 1.27e-06 GATGGGTCGG CTGCTTTTTTTGTTG CCATTTCGTT 1012703:1012803 35 1.44e-06 GGGCATGACC CACCCTTTTTTATAT AATGGATCGG 1107822:1107922 44 1.84e-06 CTCTATAATG GGGCCTTTGTTGTGC TCGGGACGTG 4196355:4196455 43 2.07e-06 CCCAAGGCGA GCCGTTTTTTTATAT CTGACTAAAC 3403344:3403444 48 2.07e-06 GCCGGCTTGC CGGCTCTTTTTGTTT ACCGAAAGCA 349812:349912 73 2.61e-06 AATCGGCGCA CCGCTTTTTCTGTTT TGCTGGGGGA 2544044:2544144 50 2.91e-06 TCCCCTAGTG GAGGCTTTTTTTTGC ATTAATATCA 527164:527264 46 2.91e-06 CTACAAGCGG CGGCTTTTGTTGTAT GATTCCGCGA 1575172:1575272 76 3.25e-06 CCAATCGGTA TGCCTTTTTTCATTT AAGGAGTCTA 3907282:3907382 7 3.62e-06 CGCGCG GCCCCTTTTTCATGG CCGTTGGTGC 1227615:1227715 21 3.62e-06 ACCAATCGGT GTGGCTTTTTTATTG CTCAGTCCCA 4236118:4236218 43 4.02e-06 GCCCTGTCTG TTTCTTTTTTCATGT CTGTTTCGAC 841845:841945 53 4.94e-06 TTGGCCATTT GGGCCTTTGTTATGA TTTCAACAGG 4179853:4179953 10 5.46e-06 CCGACGGCG GCCCTTTTGTTGTCT CTTTTCAACT 3846290:3846390 44 8.07e-06 CTCCCCAGAC TCCCCTTTTCTGTTT ACCGCGCCTT 880893:880993 34 8.07e-06 CGCCGGAGAT CGGCATTTTTTTTGC CGACGCCTGC 1198248:1198348 51 8.87e-06 GTTGATGAAT TCTCTGTTTTTGTGT GATGTGCTGT 4057777:4057877 4 8.87e-06 TAA CGTGCTTTTTAGTGT CTTTTATTTG 924955:925055 65 8.87e-06 TGACAGAATA CCCCTCTTTTTTTGG ATGGCCAAAG 2568376:2568476 60 9.74e-06 CTTACAGGGC CCGCCTTTTTAGTTG TGATGAAGAC 1778569:1778669 37 1.17e-05 GCGCCGACGC CATCTTTTGTTATGA TCTACAGCAA 240271:240371 9 1.39e-05 TGCTGATT CCTCTTTGTTTTTCC AATCCGTGGA 2998610:2998710 25 1.52e-05 CCGTCATTTT TATCCTTTTTTCTGT CGTTAGACTG 3608147:3608247 77 1.52e-05 TGCCCCCTGA GTTCCTTTTCTTTGC GAGGTGCCC 3929526:3929626 62 1.52e-05 GCAGACTGTT TGGCCTTGTTTTTAT GCGATTCGAT 3310402:3310502 71 1.65e-05 CTAGGCCAGC CCTCCTTTTTTACTC TGGAGTCTGG 715659:715759 4 1.65e-05 AAA GTTGCTTGTTTGTGT GTTTTTCCGG 3634836:3634936 6 1.65e-05 GCGCA CTGGCTTGTTTGTGC CGATGCGCTC 1154101:1154201 42 1.65e-05 ACGTAAAGGA TCCGCTTTTTCGTAT AGGTTAGCTC 2097125:2097225 61 2.28e-05 AATTTAGAAT GGTGTGTTTTTGTGC CAAGTGACTT 4569577:4569677 74 2.47e-05 CCCCTGCACG GCGCTTTTGTCTTTG TGGGAGAATT 1578507:1578607 67 2.47e-05 GCATGATCCA GCGGTTTTTTGTTGT GGCTTATCAA 2981787:2981887 37 2.87e-05 AGGATTCTCC GGCCCCTTTTCATCT ATTTCCCACT 264590:264690 60 3.09e-05 GGCCGCAAGC CACCCTTTTCTTTTG CAATTTAAAA 723567:723667 70 3.09e-05 TTCGGACCCG GAGCCTTTGTCGTCT TGAGAATGAG 1932678:1932778 73 3.33e-05 CCCGGCTCCC TGCGTTTTTTCATCG TGAGGAAGTG 4266530:4266630 17 3.58e-05 ACAGGTAACC CCTGTCTTTTTATCA CCCGCGGTTC 4254225:4254325 37 3.84e-05 TTGCCCCCTC TCTCCCTTGTTTTTC AAAGGGGGCA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SSBCYTTTTTTDTKY MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- 3442419:3442519 6.6e-08 12_[+2]_73 712806:712906 2.2e-07 5_[+2]_80 845081:845181 2.6e-07 77_[+2]_8 3607667:3607767 3.2e-07 45_[+2]_40 784944:785044 7.3e-07 39_[+2]_46 3753497:3753597 7.3e-07 38_[+2]_47 817375:817475 1.3e-06 14_[+2]_71 1012703:1012803 1.4e-06 34_[+2]_51 1107822:1107922 1.8e-06 43_[+2]_42 4196355:4196455 2.1e-06 42_[+2]_43 3403344:3403444 2.1e-06 47_[+2]_38 349812:349912 2.6e-06 72_[+2]_13 2544044:2544144 2.9e-06 49_[+2]_36 527164:527264 2.9e-06 45_[+2]_40 1575172:1575272 3.2e-06 75_[+2]_10 3907282:3907382 3.6e-06 6_[+2]_79 1227615:1227715 3.6e-06 20_[+2]_65 4236118:4236218 4e-06 42_[+2]_43 841845:841945 4.9e-06 52_[+2]_33 4179853:4179953 5.5e-06 9_[+2]_76 3846290:3846390 8.1e-06 43_[+2]_42 880893:880993 8.1e-06 33_[+2]_52 1198248:1198348 8.9e-06 50_[+2]_35 4057777:4057877 8.9e-06 3_[+2]_82 924955:925055 8.9e-06 64_[+2]_21 2568376:2568476 9.7e-06 59_[+2]_26 1778569:1778669 1.2e-05 36_[+2]_49 240271:240371 1.4e-05 8_[+2]_77 2998610:2998710 1.5e-05 24_[+2]_61 3608147:3608247 1.5e-05 76_[+2]_9 3929526:3929626 1.5e-05 61_[+2]_24 3310402:3310502 1.7e-05 70_[+2]_15 715659:715759 1.7e-05 3_[+2]_82 3634836:3634936 1.7e-05 5_[+2]_80 1154101:1154201 1.7e-05 41_[+2]_44 2097125:2097225 2.3e-05 60_[+2]_25 4569577:4569677 2.5e-05 73_[+2]_12 1578507:1578607 2.5e-05 66_[+2]_19 2981787:2981887 2.9e-05 36_[+2]_49 264590:264690 3.1e-05 59_[+2]_26 723567:723667 3.1e-05 69_[+2]_16 1932678:1932778 3.3e-05 72_[+2]_13 4266530:4266630 3.6e-05 16_[+2]_69 4254225:4254325 3.8e-05 36_[+2]_49 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SSBCYTTTTTTDTKY MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF SSBCYTTTTTTDTKY width=15 seqs=44 3442419:3442519 ( 13) GGGCCTTTTTTATGC 1 712806:712906 ( 6) CGGCCTTTTTTGTAT 1 845081:845181 ( 78) CCGGTTTTTTTATGC 1 3607667:3607767 ( 46) CGGGTTTTTTTATGC 1 784944:785044 ( 40) CGCCCTTTTTTATCC 1 3753497:3753597 ( 39) CCTCCTTTTTTATTA 1 817375:817475 ( 15) CTGCTTTTTTTGTTG 1 1012703:1012803 ( 35) CACCCTTTTTTATAT 1 1107822:1107922 ( 44) GGGCCTTTGTTGTGC 1 4196355:4196455 ( 43) GCCGTTTTTTTATAT 1 3403344:3403444 ( 48) CGGCTCTTTTTGTTT 1 349812:349912 ( 73) CCGCTTTTTCTGTTT 1 2544044:2544144 ( 50) GAGGCTTTTTTTTGC 1 527164:527264 ( 46) CGGCTTTTGTTGTAT 1 1575172:1575272 ( 76) TGCCTTTTTTCATTT 1 3907282:3907382 ( 7) GCCCCTTTTTCATGG 1 1227615:1227715 ( 21) GTGGCTTTTTTATTG 1 4236118:4236218 ( 43) TTTCTTTTTTCATGT 1 841845:841945 ( 53) GGGCCTTTGTTATGA 1 4179853:4179953 ( 10) GCCCTTTTGTTGTCT 1 3846290:3846390 ( 44) TCCCCTTTTCTGTTT 1 880893:880993 ( 34) CGGCATTTTTTTTGC 1 1198248:1198348 ( 51) TCTCTGTTTTTGTGT 1 4057777:4057877 ( 4) CGTGCTTTTTAGTGT 1 924955:925055 ( 65) CCCCTCTTTTTTTGG 1 2568376:2568476 ( 60) CCGCCTTTTTAGTTG 1 1778569:1778669 ( 37) CATCTTTTGTTATGA 1 240271:240371 ( 9) CCTCTTTGTTTTTCC 1 2998610:2998710 ( 25) TATCCTTTTTTCTGT 1 3608147:3608247 ( 77) GTTCCTTTTCTTTGC 1 3929526:3929626 ( 62) TGGCCTTGTTTTTAT 1 3310402:3310502 ( 71) CCTCCTTTTTTACTC 1 715659:715759 ( 4) GTTGCTTGTTTGTGT 1 3634836:3634936 ( 6) CTGGCTTGTTTGTGC 1 1154101:1154201 ( 42) TCCGCTTTTTCGTAT 1 2097125:2097225 ( 61) GGTGTGTTTTTGTGC 1 4569577:4569677 ( 74) GCGCTTTTGTCTTTG 1 1578507:1578607 ( 67) GCGGTTTTTTGTTGT 1 2981787:2981887 ( 37) GGCCCCTTTTCATCT 1 264590:264690 ( 60) CACCCTTTTCTTTTG 1 723567:723667 ( 70) GAGCCTTTGTCGTCT 1 1932678:1932778 ( 73) TGCGTTTTTTCATCG 1 4266530:4266630 ( 17) CCTGTCTTTTTATCA 1 4254225:4254325 ( 37) TCTCCCTTGTTTTTC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SSBCYTTTTTTDTKY MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 15 n= 43000 bayes= 11.4655 E= 5.3e-013 -1210 77 38 -17 -83 54 38 -75 -1210 3 72 36 -1210 140 17 -1210 -341 103 -1210 91 -1210 -123 -252 187 -1210 -1210 -1210 212 -1210 -1210 -153 198 -1210 -1210 -53 183 -1210 -155 -1210 198 -241 -55 -352 170 68 -355 47 -2 -1210 -355 -1210 209 -83 -74 72 25 -141 15 -53 91 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SSBCYTTTTTTDTKY MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 15 nsites= 44 E= 5.3e-013 0.000000 0.454545 0.340909 0.204545 0.136364 0.386364 0.340909 0.136364 0.000000 0.272727 0.431818 0.295455 0.000000 0.704545 0.295455 0.000000 0.022727 0.545455 0.000000 0.431818 0.000000 0.113636 0.045455 0.840909 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.090909 0.909091 0.000000 0.000000 0.181818 0.818182 0.000000 0.090909 0.000000 0.909091 0.045455 0.181818 0.022727 0.750000 0.386364 0.022727 0.363636 0.227273 0.000000 0.022727 0.000000 0.977273 0.136364 0.159091 0.431818 0.272727 0.090909 0.295455 0.181818 0.431818 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SSBCYTTTTTTDTKY MEME-2 regular expression -------------------------------------------------------------------------------- [CGT][CG][GTC][CG][CT]TTTTTT[AGT]T[GT][TC] -------------------------------------------------------------------------------- Time 180.59 secs. ******************************************************************************** ******************************************************************************** MOTIF MAAGGAGD MEME-3 width = 8 sites = 33 llr = 309 E-value = 1.1e-002 ******************************************************************************** -------------------------------------------------------------------------------- Motif MAAGGAGD MEME-3 Description -------------------------------------------------------------------------------- Simplified A 3aa::a:4 pos.-specific C 7::::::: probability G :::aa:a2 matrix T :::::::4 bits 2.1 ** * 1.9 ****** 1.7 ****** 1.5 ****** Relative 1.3 ****** Entropy 1.1 ******* (13.5 bits) 0.8 ******* 0.6 ******* 0.4 ******** 0.2 ******** 0.0 -------- Multilevel CAAGGAGA consensus A T sequence G -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MAAGGAGD MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- 950166:950266 88 1.64e-05 AGAACAGCTG CAAGGAGA TTGCC 1609068:1609168 88 1.64e-05 TGGTATGCCG CAAGGAGA GTGGT 2941290:2941390 87 1.64e-05 CACAGCGTCA CAAGGAGA GGGGTC 2173954:2174054 34 1.64e-05 ACTGCGCTGG CAAGGAGA GATTGAGAGC 4060409:4060509 88 1.64e-05 GTACCAAGTA CAAGGAGA GACGC 2914930:2915030 12 1.64e-05 GCGAGCTCCA CAAGGAGA GCCCCATCTA 3619713:3619813 87 1.64e-05 GTGAACTATC CAAGGAGA GTGAAG 3921095:3921195 35 1.64e-05 CTGAGACCTT CAAGGAGA CTGGCGGCGA 2465291:2465391 87 1.64e-05 CTCAATAGTT CAAGGAGA GGCCGG 3931100:3931200 87 1.64e-05 TCGTTGCCGC CAAGGAGA TGGCCC 2998610:2998710 88 3.20e-05 GGTGGCAAGC CAAGGAGT GAGCC 3005393:3005493 88 3.20e-05 CGCCCTCATC CAAGGAGT TTTTC 4576499:4576599 89 3.20e-05 CATGAGGGAA CAAGGAGT AAGT 3862556:3862656 89 3.20e-05 ATTGATACAA CAAGGAGT GTGT 2591254:2591354 89 3.20e-05 GCCAGCATGA CAAGGAGT CACC 2324526:2324626 89 3.20e-05 CCTGCCAGCA CAAGGAGT TCGC 4430822:4430922 88 3.20e-05 TGAAGCTTTT CAAGGAGT TCTCA 502529:502629 87 4.69e-05 GAAGGCCCTG AAAGGAGA GCAGTG 4569577:4569677 1 4.69e-05 . AAAGGAGA AGGAGCTAAT 14615:14715 86 4.69e-05 TAAGTCGATA AAAGGAGA GGGAAAT 1868130:1868230 88 4.69e-05 GCCGGATTTT AAAGGAGA ACCCT 4008426:4008526 89 7.89e-05 TCATCAAACG AAAGGAGT CAGC 3753497:3753597 25 7.89e-05 TATCGCATAA CAAGGAGG CTTCGGCCTC 1247965:1248065 57 7.89e-05 GCAACCAGAT CAAGGAGG CGATGGAGCA 4551910:4552010 89 7.89e-05 CAATAGTCGC CAAGGAGG GCAT 101206:101306 89 7.89e-05 TATCGAGTAA AAAGGAGT TGAG 240271:240371 89 7.89e-05 GCATCGGCCC AAAGGAGT TCAG 4131490:4131590 81 7.89e-05 GACCGTGTTT CAAGGAGG AAACCCATAA 1445099:1445199 85 7.89e-05 CAAACACAAC AAAGGAGT TGTTGTAC 1493831:1493931 89 7.89e-05 TTCGCCGACG AAAGGAGT CTCT 4208487:4208587 87 7.89e-05 CCTTCAGTGC CAAGGAGG ATGCTT 4007009:4007109 86 9.50e-05 GAGACGCAGG AAAGGAGG GATCAAT 3473417:3473517 87 9.50e-05 GCGCCTGTTT AAAGGAGG GCTCTC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MAAGGAGD MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- 950166:950266 1.6e-05 87_[+3]_5 1609068:1609168 1.6e-05 87_[+3]_5 2941290:2941390 1.6e-05 86_[+3]_6 2173954:2174054 1.6e-05 33_[+3]_59 4060409:4060509 1.6e-05 87_[+3]_5 2914930:2915030 1.6e-05 11_[+3]_81 3619713:3619813 1.6e-05 86_[+3]_6 3921095:3921195 1.6e-05 34_[+3]_58 2465291:2465391 1.6e-05 86_[+3]_6 3931100:3931200 1.6e-05 86_[+3]_6 2998610:2998710 3.2e-05 87_[+3]_5 3005393:3005493 3.2e-05 87_[+3]_5 4576499:4576599 3.2e-05 88_[+3]_4 3862556:3862656 3.2e-05 88_[+3]_4 2591254:2591354 3.2e-05 88_[+3]_4 2324526:2324626 3.2e-05 88_[+3]_4 4430822:4430922 3.2e-05 87_[+3]_5 502529:502629 4.7e-05 86_[+3]_6 4569577:4569677 4.7e-05 [+3]_92 14615:14715 4.7e-05 85_[+3]_7 1868130:1868230 4.7e-05 87_[+3]_5 4008426:4008526 7.9e-05 88_[+3]_4 3753497:3753597 7.9e-05 24_[+3]_68 1247965:1248065 7.9e-05 56_[+3]_36 4551910:4552010 7.9e-05 88_[+3]_4 101206:101306 7.9e-05 88_[+3]_4 240271:240371 7.9e-05 88_[+3]_4 4131490:4131590 7.9e-05 80_[+3]_12 1445099:1445199 7.9e-05 84_[+3]_8 1493831:1493931 7.9e-05 88_[+3]_4 4208487:4208587 7.9e-05 86_[+3]_6 4007009:4007109 9.5e-05 85_[+3]_7 3473417:3473517 9.5e-05 86_[+3]_6 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MAAGGAGD MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF MAAGGAGD width=8 seqs=33 950166:950266 ( 88) CAAGGAGA 1 1609068:1609168 ( 88) CAAGGAGA 1 2941290:2941390 ( 87) CAAGGAGA 1 2173954:2174054 ( 34) CAAGGAGA 1 4060409:4060509 ( 88) CAAGGAGA 1 2914930:2915030 ( 12) CAAGGAGA 1 3619713:3619813 ( 87) CAAGGAGA 1 3921095:3921195 ( 35) CAAGGAGA 1 2465291:2465391 ( 87) CAAGGAGA 1 3931100:3931200 ( 87) CAAGGAGA 1 2998610:2998710 ( 88) CAAGGAGT 1 3005393:3005493 ( 88) CAAGGAGT 1 4576499:4576599 ( 89) CAAGGAGT 1 3862556:3862656 ( 89) CAAGGAGT 1 2591254:2591354 ( 89) CAAGGAGT 1 2324526:2324626 ( 89) CAAGGAGT 1 4430822:4430922 ( 88) CAAGGAGT 1 502529:502629 ( 87) AAAGGAGA 1 4569577:4569677 ( 1) AAAGGAGA 1 14615:14715 ( 86) AAAGGAGA 1 1868130:1868230 ( 88) AAAGGAGA 1 4008426:4008526 ( 89) AAAGGAGT 1 3753497:3753597 ( 25) CAAGGAGG 1 1247965:1248065 ( 57) CAAGGAGG 1 4551910:4552010 ( 89) CAAGGAGG 1 101206:101306 ( 89) AAAGGAGT 1 240271:240371 ( 89) AAAGGAGT 1 4131490:4131590 ( 81) CAAGGAGG 1 1445099:1445199 ( 85) AAAGGAGT 1 1493831:1493931 ( 89) AAAGGAGT 1 4208487:4208587 ( 87) CAAGGAGG 1 4007009:4007109 ( 86) AAAGGAGG 1 3473417:3473517 ( 87) AAAGGAGG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MAAGGAGD MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 46500 bayes= 10.495 E= 1.1e-002 46 132 -1169 -1169 205 -1169 -1169 -1169 205 -1169 -1169 -1169 -1169 -1169 193 -1169 -1169 -1169 193 -1169 205 -1169 -1169 -1169 -1169 -1169 193 -1169 81 -1169 -30 66 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MAAGGAGD MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 33 E= 1.1e-002 0.333333 0.666667 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.424242 0.000000 0.212121 0.363636 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MAAGGAGD MEME-3 regular expression -------------------------------------------------------------------------------- [CA]AAGGAG[ATG] -------------------------------------------------------------------------------- Time 263.29 secs. ******************************************************************************** ******************************************************************************** MOTIF CAYCCWGWTGRCATBGMSAGGGAAAAGKGA MEME-4 width = 30 sites = 7 llr = 165 E-value = 3.2e+000 ******************************************************************************** -------------------------------------------------------------------------------- Motif CAYCCWGWTGRCATBGMSAGGGAAAAGKGA MEME-4 Description -------------------------------------------------------------------------------- Simplified A :9:::4:4::41a::16:91:39979:::7 pos.-specific C 7:67a1:1:1:9::3:361:::113::11: probability G 3:13::91196::137:3:797:::1739: matrix T :13::4139::::94111:11:::::36:3 bits 2.1 * 1.9 * * 1.7 * * 1.5 * * * ** * ** * Relative 1.3 * * * ** *** * * ** * ** Entropy 1.1 ** ** * ****** * ******* ** (34.0 bits) 0.8 ** ** * ****** * ********* ** 0.6 ******* ****** *************** 0.4 ******* ********************** 0.2 ****************************** 0.0 ------------------------------ Multilevel CACCCAGATGGCATTGACAGGGAAAAGTGA consensus G TG T T A C CG A C TG T sequence G -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAYCCWGWTGRCATBGMSAGGGAAAAGKGA MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- ------------------------------ 1069694:1069794 7 3.79e-17 ACTGTT CACCCAGATGGCATTGACAGGAAAAAGTGA GACGATCATC 274964:275064 7 3.79e-17 ACTGTT CACCCAGATGGCATTGACAGGAAAAAGTGA GACGATCATC 3822959:3823059 40 5.01e-11 TTTTACCATT GACCCTGAGGAAATCGCCATGGAAAATGGT GAACAGCTGT 2018407:2018507 31 7.44e-11 ATCAAACTGT CATCCCGCTGACATGTCGCGGGAACAGTGT CACATCATGC 939110:939210 36 8.44e-11 CCACAACCGG GATGCTGGTGACATCGTGAGTGAAAGGGGA GCTATCCATA 3200117:3200217 68 8.44e-11 CATTCAATCA CACGCAGTTCGCATTAACAGGGCAAATCCA TCC 1021202:1021302 64 4.78e-10 AGCCCTTGCT CTGCCTTTTGGCAGGGATAAGGACCAGTGA GGATGAT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAYCCWGWTGRCATBGMSAGGGAAAAGKGA MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- 1069694:1069794 3.8e-17 6_[+4]_64 274964:275064 3.8e-17 6_[+4]_64 3822959:3823059 5e-11 39_[+4]_31 2018407:2018507 7.4e-11 30_[+4]_40 939110:939210 8.4e-11 35_[+4]_35 3200117:3200217 8.4e-11 67_[+4]_3 1021202:1021302 4.8e-10 63_[+4]_7 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAYCCWGWTGRCATBGMSAGGGAAAAGKGA MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CAYCCWGWTGRCATBGMSAGGGAAAAGKGA width=30 seqs=7 1069694:1069794 ( 7) CACCCAGATGGCATTGACAGGAAAAAGTGA 1 274964:275064 ( 7) CACCCAGATGGCATTGACAGGAAAAAGTGA 1 3822959:3823059 ( 40) GACCCTGAGGAAATCGCCATGGAAAATGGT 1 2018407:2018507 ( 31) CATCCCGCTGACATGTCGCGGGAACAGTGT 1 939110:939210 ( 36) GATGCTGGTGACATCGTGAGTGAAAGGGGA 1 3200117:3200217 ( 68) CACGCAGTTCGCATTAACAGGGCAAATCCA 1 1021202:1021302 ( 64) CTGCCTTTTGGCAGGGATAAGGACCAGTGA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAYCCWGWTGRCATBGMSAGGGAAAAGKGA MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 30 n= 35500 bayes= 12.9137 E= 3.2e+000 -945 142 13 -945 183 -945 -945 -69 -945 110 -87 31 -945 142 13 -945 -945 191 -945 -945 83 -90 -945 90 -945 -945 171 -69 83 -90 -87 31 -945 -945 -87 190 -945 -90 171 -945 83 -945 112 -945 -76 168 -945 -945 205 -945 -945 -945 -945 -945 -87 190 -945 10 13 90 -76 -945 145 -69 124 10 -945 -69 -945 110 13 -69 183 -90 -945 -945 -76 -945 145 -69 -945 -945 171 -69 24 -945 145 -945 183 -90 -945 -945 183 -90 -945 -945 156 10 -945 -945 183 -945 -87 -945 -945 -945 145 31 -945 -90 13 131 -945 -90 171 -945 156 -945 -945 31 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAYCCWGWTGRCATBGMSAGGGAAAAGKGA MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 30 nsites= 7 E= 3.2e+000 0.000000 0.714286 0.285714 0.000000 0.857143 0.000000 0.000000 0.142857 0.000000 0.571429 0.142857 0.285714 0.000000 0.714286 0.285714 0.000000 0.000000 1.000000 0.000000 0.000000 0.428571 0.142857 0.000000 0.428571 0.000000 0.000000 0.857143 0.142857 0.428571 0.142857 0.142857 0.285714 0.000000 0.000000 0.142857 0.857143 0.000000 0.142857 0.857143 0.000000 0.428571 0.000000 0.571429 0.000000 0.142857 0.857143 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.142857 0.857143 0.000000 0.285714 0.285714 0.428571 0.142857 0.000000 0.714286 0.142857 0.571429 0.285714 0.000000 0.142857 0.000000 0.571429 0.285714 0.142857 0.857143 0.142857 0.000000 0.000000 0.142857 0.000000 0.714286 0.142857 0.000000 0.000000 0.857143 0.142857 0.285714 0.000000 0.714286 0.000000 0.857143 0.142857 0.000000 0.000000 0.857143 0.142857 0.000000 0.000000 0.714286 0.285714 0.000000 0.000000 0.857143 0.000000 0.142857 0.000000 0.000000 0.000000 0.714286 0.285714 0.000000 0.142857 0.285714 0.571429 0.000000 0.142857 0.857143 0.000000 0.714286 0.000000 0.000000 0.285714 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAYCCWGWTGRCATBGMSAGGGAAAAGKGA MEME-4 regular expression -------------------------------------------------------------------------------- [CG]A[CT][CG]C[AT]G[AT]TG[GA]CAT[TCG]G[AC][CG]AGG[GA]AA[AC]A[GT][TG]G[AT] -------------------------------------------------------------------------------- Time 345.47 secs. ******************************************************************************** ******************************************************************************** MOTIF MTAAAWAAANCAAWAAVWT MEME-5 width = 19 sites = 10 llr = 164 E-value = 2.1e-001 ******************************************************************************** -------------------------------------------------------------------------------- Motif MTAAAWAAANCAAWAAVWT MEME-5 Description -------------------------------------------------------------------------------- Simplified A 6:79a6a994:7758934: pos.-specific C 333::1:1:2a3::1:41: probability G 1::::::::2::2:1:3:: matrix T :7:1:3::12::15:1:5a bits 2.1 * * * 1.9 * * * * 1.7 * * * * 1.5 ** *** * * * Relative 1.3 * ** *** * * * Entropy 1.1 **** *** ** *** * (23.6 bits) 0.8 ******** ****** * 0.6 ********* ****** ** 0.4 ********* ********* 0.2 ********* ********* 0.0 ------------------- Multilevel ATAAAAAAAACAAAAACTT consensus CCC T C CGT AA sequence G G T -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MTAAAWAAANCAAWAAVWT MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- ------------------- 2794997:2795097 65 2.33e-10 ATGAACCAGC ATAAATAAACCAATAACTT TACTTAATGG 3609137:3609237 41 9.39e-10 TCGGATCGTG ATAAAAAAAGCAGTAACTT GGGGCAATTT 520261:520361 56 5.87e-09 CGTTTTATGA CCCAATAAAACAATAAGTT AGATCAGGAC 1403874:1403974 67 1.54e-08 TCTCGGCAAC ACAAAAACAACCATAAATT AACCGAGAGA 3267754:3267854 22 1.66e-08 TGCCATAAAT CTAAATAAATCATAAAGAT ATGGTTTGCC 432101:432201 50 1.66e-08 GGGGCCCAAT ATAAAAAAAGCCAAGAAAT TCCAACCTTT 1528420:1528520 2 2.31e-08 C ATAAAAAATTCAAAAAACT TCTTTACCAG 543033:543133 39 4.62e-08 GAAACCGCAG ATCAACAAAACAAACAGAT AAATACGCAC 1294141:1294241 17 4.95e-08 AAGGGGATTT CCCAAAAAACCAATATCTT GCAACGTCCT 1532115:1532215 60 1.02e-07 TCCTCCTGAT GTATAAAAAACCGAAACAT GTTGATTAGT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MTAAAWAAANCAAWAAVWT MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- 2794997:2795097 2.3e-10 64_[+5]_17 3609137:3609237 9.4e-10 40_[+5]_41 520261:520361 5.9e-09 55_[+5]_26 1403874:1403974 1.5e-08 66_[+5]_15 3267754:3267854 1.7e-08 21_[+5]_60 432101:432201 1.7e-08 49_[+5]_32 1528420:1528520 2.3e-08 1_[+5]_80 543033:543133 4.6e-08 38_[+5]_43 1294141:1294241 4.9e-08 16_[+5]_65 1532115:1532215 1e-07 59_[+5]_22 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MTAAAWAAANCAAWAAVWT MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF MTAAAWAAANCAAWAAVWT width=19 seqs=10 2794997:2795097 ( 65) ATAAATAAACCAATAACTT 1 3609137:3609237 ( 41) ATAAAAAAAGCAGTAACTT 1 520261:520361 ( 56) CCCAATAAAACAATAAGTT 1 1403874:1403974 ( 67) ACAAAAACAACCATAAATT 1 3267754:3267854 ( 22) CTAAATAAATCATAAAGAT 1 432101:432201 ( 50) ATAAAAAAAGCCAAGAAAT 1 1528420:1528520 ( 2) ATAAAAAATTCAAAAAACT 1 543033:543133 ( 39) ATCAACAAAACAAACAGAT 1 1294141:1294241 ( 17) CCCAAAAAACCAATATCTT 1 1532115:1532215 ( 60) GTATAAAAAACCGAAACAT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MTAAAWAAANCAAWAAVWT MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 19 n= 41000 bayes= 12.2527 E= 2.1e-001 131 17 -139 -997 -997 17 -997 160 153 17 -997 -997 190 -997 -997 -120 205 -997 -997 -997 131 -141 -997 38 205 -997 -997 -997 190 -141 -997 -997 190 -997 -997 -120 73 -41 -39 -20 -997 191 -997 -997 153 17 -997 -997 153 -997 -39 -120 105 -997 -997 112 173 -141 -139 -997 190 -997 -997 -120 31 59 20 -997 73 -141 -997 112 -997 -997 -997 212 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MTAAAWAAANCAAWAAVWT MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 19 nsites= 10 E= 2.1e-001 0.600000 0.300000 0.100000 0.000000 0.000000 0.300000 0.000000 0.700000 0.700000 0.300000 0.000000 0.000000 0.900000 0.000000 0.000000 0.100000 1.000000 0.000000 0.000000 0.000000 0.600000 0.100000 0.000000 0.300000 1.000000 0.000000 0.000000 0.000000 0.900000 0.100000 0.000000 0.000000 0.900000 0.000000 0.000000 0.100000 0.400000 0.200000 0.200000 0.200000 0.000000 1.000000 0.000000 0.000000 0.700000 0.300000 0.000000 0.000000 0.700000 0.000000 0.200000 0.100000 0.500000 0.000000 0.000000 0.500000 0.800000 0.100000 0.100000 0.000000 0.900000 0.000000 0.000000 0.100000 0.300000 0.400000 0.300000 0.000000 0.400000 0.100000 0.000000 0.500000 0.000000 0.000000 0.000000 1.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MTAAAWAAANCAAWAAVWT MEME-5 regular expression -------------------------------------------------------------------------------- [AC][TC][AC]AA[AT]AAA[ACGT]C[AC][AG][AT]AA[CAG][TA]T -------------------------------------------------------------------------------- Time 427.09 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- 3929526:3929626 5.04e-02 61_[+2(1.52e-05)]_24 830632:830732 9.78e-02 64_[+5(1.12e-05)]_17 3686104:3686204 5.26e-01 100 3349726:3349826 3.56e-01 100 529063:529163 3.05e-02 100 4208487:4208587 8.54e-02 86_[+3(7.89e-05)]_6 1493831:1493931 1.05e-01 88_[+3(7.89e-05)]_4 4002709:4002809 4.55e-01 100 1141073:1141173 4.81e-03 7_[+1(1.64e-06)]_65 2083296:2083396 2.71e-01 100 2304092:2304192 5.89e-02 100 3454400:3454500 3.92e-03 68_[+1(1.66e-07)]_4 4401977:4402077 3.76e-01 100 1907902:1908002 9.79e-01 100 3474422:3474522 7.06e-02 100 2163866:2163966 8.98e-02 100 4123482:4123582 2.68e-01 100 1683320:1683420 3.91e-01 100 358782:358882 1.52e-01 100 4390696:4390796 5.11e-01 100 1252014:1252114 4.99e-01 100 4145962:4146062 6.00e-02 4_[+1(1.24e-05)]_68 3848807:3848907 2.95e-01 100 1895059:1895159 8.94e-01 100 248375:248475 2.64e-01 100 4220058:4220158 2.07e-01 100 2045264:2045364 8.10e-01 100 1601095:1601195 2.18e-01 100 934147:934247 2.63e-01 100 2411179:2411279 7.98e-02 100 1445099:1445199 7.19e-03 84_[+3(7.89e-05)]_8 2726767:2726867 4.36e-01 100 790447:790547 5.80e-01 100 8510:8610 3.28e-01 100 2955942:2956042 4.32e-01 100 179942:180042 1.99e-01 100 2443225:2443325 9.21e-01 100 2760290:2760390 8.89e-02 100 1029095:1029195 2.94e-01 100 1837497:1837597 2.33e-02 70_[+1(4.50e-06)]_2 2762492:2762592 7.21e-01 100 3597155:3597255 4.70e-01 100 3010306:3010406 6.45e-01 100 2165181:2165281 7.01e-02 100 2181959:2182059 6.43e-01 100 3402047:3402147 6.56e-01 100 4382957:4383057 3.82e-01 100 1035131:1035231 2.38e-01 100 2780095:2780195 6.50e-04 17_[+1(1.33e-06)]_55 3532372:3532472 6.37e-01 100 4580569:4580669 1.59e-01 100 3473417:3473517 5.90e-02 86_[+3(9.50e-05)]_6 4380238:4380338 4.67e-01 100 2672801:2672901 7.59e-01 100 4237122:4237222 2.61e-01 100 1484303:1484403 8.68e-01 100 4266530:4266630 6.74e-02 16_[+2(3.58e-05)]_69 4422795:4422895 2.21e-01 100 4286422:4286522 2.86e-03 2_[+1(3.87e-07)]_38_[+1(4.50e-06)]_\ 4 56547:56647 1.28e-02 100 274964:275064 6.41e-12 6_[+4(3.79e-17)]_64 611033:611133 2.92e-01 100 2120212:2120312 5.22e-01 100 3071859:3071959 9.42e-01 100 3383970:3384070 6.09e-01 100 348685:348785 2.21e-02 17_[+1(1.83e-06)]_55 972202:972302 3.91e-01 100 1294141:1294241 1.16e-03 16_[+5(4.95e-08)]_65 3797075:3797175 6.26e-01 100 3720824:3720924 4.12e-01 100 116949:117049 3.49e-01 100 4110598:4110698 1.10e-02 100 3932004:3932104 1.95e-01 100 1715516:1715616 4.42e-01 100 534321:534421 7.28e-01 100 880893:880993 1.90e-03 33_[+2(8.07e-06)]_52 4501457:4501557 6.43e-01 100 4021198:4021298 1.35e-03 5_[+1(1.33e-06)]_67 590486:590586 2.27e-01 100 2979433:2979533 2.60e-01 100 3523677:3523777 2.25e-02 43_[+1(4.50e-06)]_29 2410416:2410516 7.15e-01 100 3931100:3931200 1.21e-01 86_[+3(1.64e-05)]_6 1489901:1490001 6.39e-01 100 4090717:4090817 7.06e-01 100 1584433:1584533 6.52e-01 100 1528420:1528520 2.06e-03 1_[+5(2.31e-08)]_80 4480428:4480528 3.54e-01 100 3569316:3569416 2.79e-01 100 3608147:3608247 8.15e-05 6_[+1(1.07e-06)]_42_[+2(1.52e-05)]_\ 9 3308645:3308745 3.71e-01 100 2292711:2292811 2.91e-01 100 3256830:3256930 8.16e-01 100 842740:842840 5.11e-01 100 4089379:4089479 1.80e-04 13_[+1(3.04e-06)]_59 3986545:3986645 7.53e-01 100 1887725:1887825 2.31e-01 100 3544189:3544289 4.60e-01 100 347491:347591 2.60e-01 100 3969374:3969474 2.18e-01 100 961766:961866 5.30e-01 100 4194282:4194382 4.77e-02 61_[+5(9.60e-05)]_20 3822959:3823059 1.09e-06 39_[+4(5.01e-11)]_31 1046119:1046219 3.70e-01 100 1338569:1338669 1.50e-01 100 4062768:4062868 8.47e-02 100 1336233:1336333 8.11e-01 100 3609137:3609237 3.71e-06 40_[+5(9.39e-10)]_41 4178146:4178246 5.46e-01 100 1929656:1929756 5.50e-01 100 3748705:3748805 1.84e-01 100 1455407:1455507 3.10e-01 100 31385:31485 5.68e-01 100 2674626:2674726 1.19e-01 100 4430822:4430922 3.85e-02 87_[+3(3.20e-05)]_5 2794997:2795097 2.93e-05 64_[+5(2.33e-10)]_17 3350095:3350195 2.49e-01 100 707810:707910 6.75e-01 100 432101:432201 7.46e-05 49_[+5(1.66e-08)]_32 2324526:2324626 4.28e-02 88_[+3(3.20e-05)]_4 1911981:1912081 4.67e-06 1_[+1(1.27e-09)]_71 4502530:4502630 1.23e-03 7_[+1(5.49e-07)]_65 2916829:2916929 1.51e-05 46_[+1(3.54e-10)]_26 2195447:2195547 3.02e-01 100 1777467:1777567 2.67e-01 100 1868130:1868230 1.69e-01 87_[+3(4.69e-05)]_5 2457399:2457499 5.62e-01 100 4131490:4131590 8.34e-03 80_[+3(7.89e-05)]_12 115622:115722 4.74e-01 100 1331038:1331138 1.23e-01 100 4224793:4224893 1.94e-01 100 4073851:4073951 5.56e-03 29_[+1(1.36e-05)]_43 257557:257657 5.54e-02 100 240271:240371 1.40e-03 8_[+2(1.39e-05)]_65_[+3(7.89e-05)]_\ 4 3934295:3934395 2.03e-02 29_[+1(1.19e-06)]_43 845081:845181 9.37e-04 77_[+2(2.64e-07)]_8 841845:841945 6.46e-03 52_[+2(4.94e-06)]_33 463138:463238 8.23e-02 100 1572856:1572956 1.99e-01 100 838076:838176 7.01e-01 100 4030145:4030245 6.79e-01 100 600216:600316 4.15e-03 14_[+1(4.35e-07)]_58 430500:430600 4.97e-02 100 348441:348541 3.95e-03 100 570751:570851 6.49e-01 100 2591254:2591354 5.44e-06 20_[+1(2.66e-05)]_8_[+4(4.22e-05)]_\ 2_[+3(3.20e-05)]_4 1166054:1166154 9.28e-01 100 897222:897322 5.07e-02 100 2654620:2654720 3.21e-01 100 1548914:1549014 1.56e-01 100 459205:459305 5.77e-02 100 3449864:3449964 3.87e-04 32_[+1(1.88e-07)]_40 899846:899946 9.65e-02 100 2976234:2976334 4.08e-01 100 268235:268335 2.46e-01 100 680837:680937 8.03e-01 100 663479:663579 9.63e-01 100 3610733:3610833 7.94e-01 100 3519874:3519974 5.24e-01 100 4149302:4149402 5.87e-01 100 4579310:4579410 2.27e-01 100 4518669:4518769 4.91e-01 100 3924618:3924718 6.89e-02 49_[+1(7.22e-06)]_23 712806:712906 9.23e-05 5_[+2(2.16e-07)]_80 364096:364196 4.39e-02 100 2333845:2333945 1.45e-01 100 1234413:1234513 3.25e-01 100 3416778:3416878 3.98e-01 100 960064:960164 3.25e-01 100 932521:932621 1.98e-01 100 1187486:1187586 1.58e-02 57_[+2(9.36e-05)]_28 2890412:2890512 9.59e-01 100 64708:64808 2.91e-01 100 2927398:2927498 5.11e-01 100 78608:78708 5.00e-01 100 1028605:1028705 7.70e-01 100 3528417:3528517 1.09e-01 100 613569:613669 1.62e-01 100 3599150:3599250 8.11e-01 100 3627614:3627714 3.26e-02 100 2889558:2889658 3.85e-02 70_[+1(1.48e-05)]_2 2498859:2498959 2.16e-01 100 2465291:2465391 2.94e-02 86_[+3(1.64e-05)]_6 2057990:2058090 1.08e-01 100 1008011:1008111 8.73e-01 100 2291680:2291780 8.36e-01 100 710445:710545 8.19e-01 100 3674508:3674608 1.46e-02 8_[+1(9.66e-05)]_64 1154101:1154201 4.40e-02 41_[+2(1.65e-05)]_44 3862556:3862656 4.01e-05 7_[+1(1.83e-06)]_53_[+3(3.20e-05)]_\ 4 2455356:2455456 6.52e-01 100 1909391:1909491 3.48e-01 100 3342916:3343016 1.59e-01 25_[+1(1.91e-05)]_47 3634836:3634936 7.02e-03 5_[+2(1.65e-05)]_80 14615:14715 1.40e-01 85_[+3(4.69e-05)]_7 3073512:3073612 2.87e-02 100 4007009:4007109 5.18e-02 85_[+3(9.50e-05)]_7 3894392:3894492 4.70e-01 100 164119:164219 5.25e-03 100 2166884:2166984 4.47e-03 43_[+1(2.25e-06)]_29 3522473:3522573 7.27e-01 100 2874367:2874467 4.94e-01 100 306331:306431 1.93e-04 25_[+1(2.12e-07)]_47 4056544:4056644 9.08e-02 100 4576499:4576599 5.81e-02 88_[+3(3.20e-05)]_4 3177338:3177438 4.24e-01 100 4550127:4550227 2.66e-01 100 329604:329704 2.66e-01 100 3332992:3333092 8.37e-02 100 2316423:2316523 9.23e-01 100 1227615:1227715 5.95e-03 20_[+2(3.62e-06)]_65 3415990:3416090 4.05e-01 100 3005393:3005493 6.68e-02 87_[+3(3.20e-05)]_5 937741:937841 9.47e-01 100 101206:101306 8.73e-02 88_[+3(7.89e-05)]_4 1951759:1951859 5.13e-02 100 470754:470854 2.67e-03 32_[+1(1.33e-06)]_40 3958116:3958216 6.27e-01 100 4293536:4293636 5.09e-01 100 3722621:3722721 9.48e-01 100 1292558:1292658 5.42e-01 100 924955:925055 5.60e-04 8_[+5(1.68e-05)]_37_[+2(8.87e-06)]_\ 21 1487583:1487683 7.68e-01 100 3808965:3809065 2.75e-01 100 995299:995399 3.03e-01 100 1535482:1535582 3.36e-01 100 953307:953407 5.21e-01 100 44427:44527 3.10e-01 100 954716:954816 6.21e-01 100 3607406:3607506 4.56e-01 100 4551910:4552010 6.42e-02 88_[+3(7.89e-05)]_4 3681124:3681224 4.01e-01 100 3498142:3498242 3.18e-01 100 2870457:2870557 9.75e-01 100 598088:598188 2.53e-01 100 218607:218707 1.61e-01 100 2579970:2580070 3.88e-01 100 2398572:2398672 1.93e-03 47_[+1(4.89e-07)]_25 2275794:2275894 8.45e-04 11_[+1(4.96e-06)]_61 631331:631431 4.46e-01 100 4001795:4001895 2.24e-02 7_[+1(4.63e-05)]_65 3045070:3045170 3.56e-01 100 4236118:4236218 2.88e-02 42_[+2(4.02e-06)]_43 656510:656610 2.96e-01 100 3442419:3442519 1.39e-04 12_[+2(6.58e-08)]_73 3361355:3361455 4.80e-01 100 3289418:3289518 2.15e-01 100 1782153:1782253 2.01e-01 100 3607158:3607258 3.95e-01 100 1969269:1969369 2.95e-01 100 821010:821110 1.40e-03 55_[+1(5.99e-06)]_17 2848482:2848582 9.52e-01 100 2852832:2852932 1.01e-01 100 3921095:3921195 1.32e-01 34_[+3(1.64e-05)]_58 1021202:1021302 1.34e-06 63_[+4(4.78e-10)]_7 1565550:1565650 2.55e-01 100 478004:478104 1.56e-03 36_[+1(2.75e-06)]_36 1107822:1107922 6.61e-03 43_[+2(1.84e-06)]_42 1408600:1408700 5.75e-01 100 4572434:4572534 3.81e-01 100 1447644:1447744 4.75e-01 100 3619713:3619813 3.17e-02 86_[+3(1.64e-05)]_6 2322240:2322340 8.19e-01 100 2018407:2018507 5.20e-06 30_[+4(7.44e-11)]_40 2914930:2915030 2.97e-02 11_[+3(1.64e-05)]_81 925813:925913 6.07e-02 100 783181:783281 2.11e-01 100 603235:603335 1.12e-01 100 1276160:1276260 4.82e-01 100 3489108:3489208 4.87e-02 31_[+1(1.36e-05)]_41 3033861:3033961 5.24e-01 100 1964333:1964433 3.63e-01 100 1250663:1250763 5.12e-02 100 527164:527264 2.67e-03 45_[+2(2.91e-06)]_40 3607667:3607767 2.00e-03 45_[+2(3.18e-07)]_40 1143615:1143715 2.97e-02 56_[+1(4.09e-06)]_16 3815131:3815231 5.78e-02 28_[+2(8.83e-05)]_57 542197:542297 4.38e-03 12_[+1(1.61e-05)]_60 4491602:4491702 5.08e-01 100 2947446:2947546 1.74e-01 100 1904701:1904801 3.28e-01 100 715659:715759 1.97e-02 3_[+2(1.65e-05)]_82 2289778:2289878 5.52e-01 100 965772:965872 1.26e-01 100 1152101:1152201 5.61e-01 100 3828029:3828129 9.77e-01 100 3930138:3930238 8.85e-01 100 4599122:4599222 8.20e-01 100 2502284:2502384 7.25e-02 66_[+5(8.80e-05)]_15 349812:349912 2.82e-03 72_[+2(2.61e-06)]_13 1578507:1578607 2.36e-02 66_[+2(2.47e-05)]_19 3490561:3490661 7.45e-01 100 2568376:2568476 2.85e-02 59_[+2(9.74e-06)]_26 3760393:3760493 7.93e-01 100 2468741:2468841 3.87e-01 100 3923538:3923638 1.28e-01 100 395401:395501 1.96e-06 23_[+1(3.38e-08)]_49 4406325:4406425 5.11e-01 100 723567:723667 1.30e-02 69_[+2(3.09e-05)]_16 617250:617350 1.03e-01 100 3509754:3509854 4.06e-01 100 2293818:2293918 4.88e-01 100 4570411:4570511 3.35e-01 100 3330675:3330775 1.34e-03 25_[+1(1.66e-07)]_47 2419072:2419172 6.56e-01 100 3272886:3272986 2.78e-02 17_[+1(3.67e-05)]_55 3344682:3344782 3.21e-02 100 4034884:4034984 1.83e-01 100 3267754:3267854 2.84e-05 21_[+5(1.66e-08)]_60 656793:656893 2.34e-01 100 4611699:4611799 3.86e-01 100 3846290:3846390 2.09e-02 43_[+2(8.07e-06)]_42 817375:817475 1.02e-03 14_[+2(1.27e-06)]_71 3756547:3756647 4.58e-01 100 527941:528041 5.55e-01 100 4192161:4192261 3.70e-01 100 1956514:1956614 3.69e-01 100 4096698:4096798 2.80e-01 100 50296:50396 4.88e-01 100 3854961:3855061 3.22e-01 100 1403874:1403974 1.11e-04 66_[+5(1.54e-08)]_15 3345795:3345895 9.59e-04 36_[+1(8.72e-08)]_36 3200117:3200217 4.21e-06 67_[+4(8.44e-11)]_3 351629:351729 2.09e-01 100 377208:377308 2.97e-01 100 4587971:4588071 3.69e-02 100 3125972:3126072 5.06e-01 100 3737032:3737132 3.82e-01 100 2450757:2450857 4.96e-02 52_[+1(3.96e-05)]_20 2546557:2546657 4.80e-01 100 4130451:4130551 1.94e-02 29_[+5(4.69e-05)]_52 2172689:2172789 9.75e-01 100 1743806:1743906 7.41e-01 100 1806225:1806325 8.28e-01 100 3660863:3660963 4.98e-01 100 2597835:2597935 2.92e-01 100 3141975:3142075 5.99e-02 100 2460079:2460179 3.00e-01 100 1921066:1921166 5.06e-01 100 2176099:2176199 5.89e-01 100 3310402:3310502 1.00e-01 70_[+2(1.65e-05)]_15 12157:12257 5.67e-01 100 3495835:3495935 8.06e-04 8_[+1(1.46e-07)]_64 4057777:4057877 3.24e-03 3_[+2(8.87e-06)]_82 2097125:2097225 9.42e-03 60_[+2(2.28e-05)]_25 3810198:3810298 1.40e-01 100 1247965:1248065 2.81e-02 56_[+3(7.89e-05)]_36 2114502:2114602 4.23e-01 100 1254532:1254632 4.86e-01 100 807075:807175 4.43e-01 100 1059459:1059559 5.05e-01 100 3526684:3526784 3.16e-01 100 311304:311404 1.32e-03 34_[+1(2.12e-07)]_38 3384510:3384610 2.31e-01 100 2749058:2749158 2.98e-01 100 3753497:3753597 3.80e-04 24_[+3(7.89e-05)]_6_[+2(7.29e-07)]_\ 47 3027808:3027908 2.77e-01 100 3796413:3796513 1.01e-02 6_[+1(3.71e-06)]_66 4553276:4553376 2.16e-01 100 297447:297547 4.80e-01 100 4204761:4204861 4.65e-03 100 3584044:3584144 2.76e-01 100 4060409:4060509 2.29e-02 87_[+3(1.64e-05)]_5 157964:158064 4.75e-01 100 171923:172023 4.20e-01 100 4530201:4530301 5.48e-02 100 1012703:1012803 8.18e-03 34_[+2(1.44e-06)]_51 2173954:2174054 1.10e-02 33_[+3(1.64e-05)]_59 3061473:3061573 7.45e-01 100 2402893:2402993 9.16e-01 100 939110:939210 2.37e-06 35_[+4(8.44e-11)]_35 2393248:2393348 5.24e-01 100 1300883:1300983 7.19e-01 100 4254225:4254325 2.99e-02 36_[+2(3.84e-05)]_49 3978264:3978364 7.02e-01 100 1044292:1044392 2.70e-01 100 4038340:4038440 1.17e-01 100 2999690:2999790 1.50e-02 100 2354373:2354473 3.50e-01 100 2997013:2997113 1.71e-01 100 4569577:4569677 1.00e-03 [+3(4.69e-05)]_65_[+2(2.47e-05)]_12 2944507:2944607 3.82e-01 100 1627346:1627446 3.43e-02 100 1069694:1069794 6.41e-12 6_[+4(3.79e-17)]_64 4605232:4605332 6.36e-01 100 2998610:2998710 4.95e-04 24_[+2(1.52e-05)]_48_[+3(3.20e-05)]_\ 5 267316:267416 3.52e-01 100 892517:892617 3.93e-01 100 855904:856004 5.44e-01 100 1970104:1970204 2.46e-01 100 4581198:4581298 3.06e-04 34_[+1(1.75e-05)]_38 1932678:1932778 1.16e-02 72_[+2(3.33e-05)]_13 4310672:4310772 4.70e-01 100 1413491:1413591 6.39e-01 100 3104927:3105027 9.82e-03 36_[+1(7.22e-06)]_36 1198248:1198348 9.42e-04 50_[+2(8.87e-06)]_35 944576:944676 4.03e-01 100 4424023:4424123 8.96e-03 6_[+1(7.92e-06)]_66 1593863:1593963 6.13e-01 100 520261:520361 1.33e-04 55_[+5(5.87e-09)]_26 2567127:2567227 5.06e-01 100 4111046:4111146 4.31e-01 100 2024761:2024861 3.93e-01 100 4008426:4008526 1.68e-02 88_[+3(7.89e-05)]_4 2576:2676 3.51e-03 10_[+4(2.69e-06)]_60 2346557:2346657 9.83e-01 100 4102805:4102905 7.25e-01 100 1659812:1659912 1.97e-02 100 2981787:2981887 2.43e-02 36_[+2(2.87e-05)]_49 502529:502629 1.45e-06 30_[+5(2.94e-05)]_9_[+1(4.35e-07)]_\ [+3(4.69e-05)]_6 4167489:4167589 7.73e-01 100 3946573:3946673 2.10e-01 100 818233:818333 2.89e-01 100 3856365:3856465 4.59e-01 100 722308:722408 4.48e-02 72_[+1(3.96e-05)] 3222719:3222819 9.88e-01 100 1110629:1110729 7.23e-01 100 386328:386428 1.14e-02 4_[+1(3.13e-05)]_68 51636:51736 6.80e-02 19_[+1(2.26e-05)]_53 2091173:2091273 2.96e-01 100 1509310:1509410 7.39e-01 100 2329849:2329949 4.21e-01 100 3492079:3492179 7.80e-01 100 4179853:4179953 6.02e-07 9_[+2(5.46e-06)]_21_[+1(3.87e-07)]_\ 27 4568947:4569047 5.42e-01 100 2330397:2330497 3.34e-01 100 277892:277992 2.44e-01 100 681638:681738 9.13e-01 100 3144692:3144792 8.98e-01 100 1798054:1798154 2.31e-01 100 1937689:1937789 1.72e-01 100 943098:943198 1.07e-01 100 792062:792162 7.74e-02 100 2451791:2451891 3.24e-01 100 2544044:2544144 2.19e-03 49_[+2(2.91e-06)]_36 3403344:3403444 8.33e-03 47_[+2(2.07e-06)]_38 3149681:3149781 3.18e-01 100 550615:550715 6.86e-01 100 505224:505324 1.67e-01 100 3415106:3415206 9.20e-01 100 3233084:3233184 3.58e-01 100 3017972:3018072 4.65e-01 100 1704797:1704897 7.19e-01 100 3775379:3775479 3.79e-01 100 4547207:4547307 2.92e-01 100 4118992:4119092 2.10e-01 100 405084:405184 1.45e-01 100 2730475:2730575 1.58e-02 48_[+1(1.14e-05)]_24 4005043:4005143 6.56e-01 100 1727169:1727269 8.62e-02 100 1520500:1520600 3.55e-01 100 4213459:4213559 9.69e-01 100 237667:237767 3.97e-01 100 3585366:3585466 1.43e-01 100 3646971:3647071 2.98e-01 100 2619349:2619449 4.09e-01 100 2029605:2029705 6.30e-01 100 4516273:4516373 2.04e-01 100 4348887:4348987 1.83e-01 100 2164258:2164358 5.72e-01 100 2177502:2177602 4.96e-01 100 3650042:3650142 6.95e-01 100 2408849:2408949 6.04e-02 100 2833190:2833290 4.19e-02 1_[+1(2.45e-05)]_71 1575172:1575272 1.08e-03 75_[+2(3.25e-06)]_10 2695843:2695943 7.99e-02 100 3444463:3444563 3.02e-01 100 3438072:3438172 8.47e-01 100 201146:201246 9.69e-01 100 1778569:1778669 1.92e-02 36_[+2(1.17e-05)]_49 586848:586948 4.59e-01 100 264590:264690 6.47e-03 59_[+2(3.09e-05)]_26 2941290:2941390 2.32e-02 86_[+3(1.64e-05)]_6 543033:543133 2.88e-04 38_[+5(4.62e-08)]_43 1409372:1409472 1.01e-01 100 3885827:3885927 2.75e-01 100 648479:648579 4.44e-01 100 182476:182576 5.30e-01 100 2731254:2731354 1.46e-02 40_[+1(1.33e-06)]_32 1609068:1609168 3.47e-05 28_[+1(8.61e-07)]_31_[+3(1.64e-05)]_\ 5 1787950:1788050 4.74e-01 100 1624392:1624492 5.06e-01 100 4076697:4076797 7.81e-01 100 4181771:4181871 4.52e-03 65_[+1(2.66e-05)]_7 3421977:3422077 5.86e-01 100 2718216:2718316 5.53e-01 100 1072353:1072453 1.08e-01 100 3907282:3907382 7.33e-03 6_[+2(3.62e-06)]_79 4429074:4429174 2.31e-01 100 2949123:2949223 6.82e-01 100 3849484:3849584 9.54e-01 100 4259305:4259405 6.56e-01 100 2290763:2290863 3.65e-02 41_[+1(2.08e-05)]_31 4196355:4196455 1.00e-03 42_[+2(2.07e-06)]_43 281619:281719 8.06e-03 16_[+4(6.03e-05)]_54 1532115:1532215 3.98e-04 59_[+5(1.02e-07)]_22 784944:785044 3.93e-05 39_[+2(7.29e-07)]_46 709898:709998 3.29e-01 100 950166:950266 2.54e-02 87_[+3(1.64e-05)]_5 1281076:1281176 4.93e-01 100 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: kodomo ********************************************************************************