BLASTN 2.15.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: ../cat.fna 70 sequences; 2,425,730,029 total letters Query= CP014225.1:2234710-2237641|23S_rRNA|Escherichia coli str. K-12 substr. MG1655 strain K-12 Length=2932 Score E Sequences producing significant alignments: (Bits) Value CM031425.1 Felis catus isolate Fca126 chromosome E1, whole genome... 96.9 5e-17 >CM031425.1 Felis catus isolate Fca126 chromosome E1, whole genome shotgun sequence Length=61876196 Score = 96.9 bits (106), Expect = 5e-17 Identities = 128/175 (73%), Gaps = 6/175 (3%) Strand=Plus/Plus Query 2442 AAAAGGTACTCCGGGGATAACAGGCTGATACCGCCCAAGAGTTCATATCGACGGCGGTGT 2501 ||||| ||| | |||||||| |||| | || ||||| ||||||| ||||| || | | Sbjct 12969636 AAAAGTTACCACAGGGATAACTGGCTTGTGGCGGCCAAGCGTTCATAGCGACGTCGCTTT 12969695 Query 2502 TTGGCACCTCGATGTCGGCTCATCACATCCTGGGGCTGAAGTAG--GTC-CCAAGGGTAT 2558 ||| | ||||||||||||| || ||| | | ||||| || || ||||| || Sbjct 12969696 TTGATCCTTCGATGTCGGCTCTTCCTATCATTG---TGAAGCAGAATTCACCAAGCGTTG 12969752 Query 2559 GGCTGTTCGCCATTTAAAGTGGTACGCGAGCTGGGTTTAGAACGTCGTGAGACAG 2613 | ||||| || ||| || ||| |||||||||||||| ||||||||||||| Sbjct 12969753 GATTGTTCACCCACTAATAGGGAACGTGAGCTGGGTTTAGACCGTCGTGAGACAG 12969807 Score = 96.9 bits (106), Expect = 5e-17 Identities = 128/175 (73%), Gaps = 6/175 (3%) Strand=Plus/Plus Query 2442 AAAAGGTACTCCGGGGATAACAGGCTGATACCGCCCAAGAGTTCATATCGACGGCGGTGT 2501 ||||| ||| | |||||||| |||| | || ||||| ||||||| ||||| || | | Sbjct 13056441 AAAAGTTACCACAGGGATAACTGGCTTGTGGCGGCCAAGCGTTCATAGCGACGTCGCTTT 13056500 Query 2502 TTGGCACCTCGATGTCGGCTCATCACATCCTGGGGCTGAAGTAG--GTC-CCAAGGGTAT 2558 ||| | ||||||||||||| || ||| | | ||||| || || ||||| || Sbjct 13056501 TTGATCCTTCGATGTCGGCTCTTCCTATCATTG---TGAAGCAGAATTCACCAAGCGTTG 13056557 Query 2559 GGCTGTTCGCCATTTAAAGTGGTACGCGAGCTGGGTTTAGAACGTCGTGAGACAG 2613 | ||||| || ||| || ||| |||||||||||||| ||||||||||||| Sbjct 13056558 GATTGTTCACCCACTAATAGGGAACGTGAGCTGGGTTTAGACCGTCGTGAGACAG 13056612 Score = 88.7 bits (97), Expect = 3e-14 Identities = 128/177 (72%), Gaps = 8/177 (5%) Strand=Plus/Minus Query 2442 AAAAGGTACTCCGGGGATAACAGGCTGATACCGCCCAAGAGTTCATATCGACGGCGGTGT 2501 ||||| ||| | |||||||| |||| | || ||||| ||||||| ||||| || | | Sbjct 13018598 AAAAGTTACCACAGGGATAACTGGCTTGTGGCGGCCAAGCGTTCATAGCGACGTCGCTTT 13018539 Query 2502 TTGGCACCTCGATGTCGGCTCATCACATCCTGGGGCTGAAGTAGG--TC-CCAAGGGTAT 2558 ||| | ||||||||||||| || ||| | | ||||| || || ||||| || Sbjct 13018538 TTGATCCTTCGATGTCGGCTCTTCCTATCATTG---TGAAGCAGAATTCACCAAGCGTTG 13018482 Query 2559 GGCTGTTCGCCATTTAAAGTGGTACGCGAGCTGGGTTTAGAACGTC--GTGAGACAG 2613 | ||||| || ||| || ||| |||||||||||||| |||| ||||||||| Sbjct 13018481 GATTGTTCACCCACTAATAGGGAACGTGAGCTGGGTTTAGACCGTCGTGTGAGACAG 13018425 Score = 66.2 bits (72), Expect = 8e-08 Identities = 71/93 (76%), Gaps = 1/93 (1%) Strand=Plus/Plus Query 198 GAACTGAAACATCTAAGTACCCCGAGGAAAAGAAATCAACCGAGATTCCCCCAGTAGCGG 257 ||| | || ||| | ||| | |||||||||||| ||| ||||||| ||||| ||| Sbjct 12965699 GAATTTAAGCATATTAGTCAGCGGAGGAAAAGAAACTAACGAGGATTCCCTCAGTAACGG 12965758 Query 258 CGAGCGAACGGGGAGCAGCCCAGAGCCTGAATC 290 |||| |||| |||| ||||||| ||| ||||| Sbjct 12965759 CGAGTGAACAGGGAAGAGCCCAGCGCC-GAATC 12965790 Score = 66.2 bits (72), Expect = 8e-08 Identities = 71/93 (76%), Gaps = 1/93 (1%) Strand=Plus/Minus Query 198 GAACTGAAACATCTAAGTACCCCGAGGAAAAGAAATCAACCGAGATTCCCCCAGTAGCGG 257 ||| | || ||| | ||| | |||||||||||| ||| ||||||| ||||| ||| Sbjct 13022558 GAATTTAAGCATATTAGTCAGCGGAGGAAAAGAAACTAACGAGGATTCCCTCAGTAACGG 13022499 Query 258 CGAGCGAACGGGGAGCAGCCCAGAGCCTGAATC 290 |||| |||| |||| ||||||| ||| ||||| Sbjct 13022498 CGAGTGAACAGGGAAGAGCCCAGCGCC-GAATC 13022467 Score = 66.2 bits (72), Expect = 8e-08 Identities = 71/93 (76%), Gaps = 1/93 (1%) Strand=Plus/Plus Query 198 GAACTGAAACATCTAAGTACCCCGAGGAAAAGAAATCAACCGAGATTCCCCCAGTAGCGG 257 ||| | || ||| | ||| | |||||||||||| ||| ||||||| ||||| ||| Sbjct 13052504 GAATTTAAGCATATTAGTCAGCGGAGGAAAAGAAACTAACGAGGATTCCCTCAGTAACGG 13052563 Query 258 CGAGCGAACGGGGAGCAGCCCAGAGCCTGAATC 290 |||| |||| |||| ||||||| ||| ||||| Sbjct 13052564 CGAGTGAACAGGGAAGAGCCCAGCGCC-GAATC 13052595 Score = 66.2 bits (72), Expect = 8e-08 Identities = 71/93 (76%), Gaps = 1/93 (1%) Strand=Plus/Plus Query 198 GAACTGAAACATCTAAGTACCCCGAGGAAAAGAAATCAACCGAGATTCCCCCAGTAGCGG 257 ||| | || ||| | ||| | |||||||||||| ||| ||||||| ||||| ||| Sbjct 13097670 GAATTTAAGCATATTAGTCAGCGGAGGAAAAGAAACTAACGAGGATTCCCTCAGTAACGG 13097729 Query 258 CGAGCGAACGGGGAGCAGCCCAGAGCCTGAATC 290 |||| |||| |||| ||||||| ||| ||||| Sbjct 13097730 CGAGTGAACAGGGAAGAGCCCAGCGCC-GAATC 13097761 Score = 61.7 bits (67), Expect = 4e-06 Identities = 65/86 (76%), Gaps = 0/86 (0%) Strand=Plus/Plus Query 1898 GAAGCCCCGGTAAACGGCGGCCGTAACTATAACGGTCCTAAGGTAGCGAAATTCCTTGTC 1957 ||||| | |||||||||||| |||||||| || || ||||||||| |||| ||| ||| Sbjct 12968999 GAAGCGCGGGTAAACGGCGGGAGTAACTATGACTCTCTTAAGGTAGCCAAATGCCTCGTC 12969058 Query 1958 GGGTAAGTTCCGACCTGCACGAATGG 1983 ||| | ||| ||| |||||| Sbjct 12969059 ATCTAATTAGTGACGCGCATGAATGG 12969084 Score = 61.7 bits (67), Expect = 4e-06 Identities = 65/86 (76%), Gaps = 0/86 (0%) Strand=Plus/Plus Query 1898 GAAGCCCCGGTAAACGGCGGCCGTAACTATAACGGTCCTAAGGTAGCGAAATTCCTTGTC 1957 ||||| | |||||||||||| |||||||| || || ||||||||| |||| ||| ||| Sbjct 13055804 GAAGCGCGGGTAAACGGCGGGAGTAACTATGACTCTCTTAAGGTAGCCAAATGCCTCGTC 13055863 Query 1958 GGGTAAGTTCCGACCTGCACGAATGG 1983 ||| | ||| ||| |||||| Sbjct 13055864 ATCTAATTAGTGACGCGCATGAATGG 13055889 Score = 59.9 bits (65), Expect = 1e-05 Identities = 49/60 (82%), Gaps = 0/60 (0%) Strand=Plus/Minus Query 1898 GAAGCCCCGGTAAACGGCGGCCGTAACTATAACGGTCCTAAGGTAGCGAAATTCCTTGTC 1957 ||||| | |||||||||||| |||||||| || || ||||||||| |||| ||| ||| Sbjct 13019236 GAAGCGCGGGTAAACGGCGGGAGTAACTATGACTCTCTTAAGGTAGCCAAATGCCTCGTC 13019177 Score = 54.5 bits (59), Expect = 5e-04 Identities = 48/59 (81%), Gaps = 1/59 (2%) Strand=Plus/Plus Query 2233 GGACAGTGTCTGGTGGGTAGTTTGACTGGGGCGGT-CTCCTCCTAAAGAGTAACGGAGG 2290 |||||||| | |||||| ||||||||||||||||| | ||| ||| |||||| ||| Sbjct 12969426 GGACAGTGCCAGGTGGGGAGTTTGACTGGGGCGGTACACCTGTCAAACGGTAACGCAGG 12969484 Score = 54.5 bits (59), Expect = 5e-04 Identities = 54/69 (78%), Gaps = 1/69 (1%) Strand=Plus/Minus Query 2233 GGACAGTGTCTGGTGGGTAGTTTGACTGGGGCGGT-CTCCTCCTAAAGAGTAACGGAGGA 2291 |||||||| | |||||| ||||||||||||||||| | ||| ||| |||||| ||| Sbjct 13018808 GGACAGTGCCAGGTGGGGAGTTTGACTGGGGCGGTACACCTGTCAAACGGTAACGCAGGT 13018749 Query 2292 GCACGAAGG 2300 | | |||| Sbjct 13018748 GTCCTAAGG 13018740 Score = 54.5 bits (59), Expect = 5e-04 Identities = 48/59 (81%), Gaps = 1/59 (2%) Strand=Plus/Plus Query 2233 GGACAGTGTCTGGTGGGTAGTTTGACTGGGGCGGT-CTCCTCCTAAAGAGTAACGGAGG 2290 |||||||| | |||||| ||||||||||||||||| | ||| ||| |||||| ||| Sbjct 13056231 GGACAGTGCCAGGTGGGGAGTTTGACTGGGGCGGTACACCTGTCAAACGGTAACGCAGG 13056289 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7029758726802 Database: ../cat.fna Posted date: Dec 25, 2023 7:49 PM Number of letters in database: 2,425,730,029 Number of sequences in database: 70 Matrix: blastn matrix 2 -3 Gap Penalties: Existence: 5, Extension: 2