hmmsearch - search a sequence database with a profile HMM HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: term4v2-pr11.hmm [term4v2-pr11-3] Sequence database: term4v2-pr11-4.fasta per-sequence score cutoff: >= 50.0 per-domain score cutoff: [none] per-sequence Eval cutoff: <= 10 per-domain Eval cutoff: [none] - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query HMM: term4v2-pr11-3 Accession: [none] Description: [none] [HMM has been calibrated; E-values are empirical estimates] Scores for complete sequences (score includes all domains): Sequence Description Score E-value N -------- ----------- ----- ------- --- Q8WZ42|reviewed|Titin|taxID:9606 76.5 4.1e-21 22 Q23551|reviewed|Twitchin|taxID:6239 60.6 1.4e-16 12 A2ASS6|reviewed|Titin|taxID:10090 60.0 2e-16 18 Parsed for domains: Sequence Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- Q8WZ42|reviewed|Titin|taxID:9606 2/22 15478 15493 .. 1 17 [] 12.2 0.0077 A2ASS6|reviewed|Titin|taxID:10090 2/18 16340 16355 .. 1 17 [] 12.1 0.0079 Q23551|reviewed|Twitchin|taxID:6239 2/12 2061 2077 .. 1 17 [] 10.3 0.026 Q23551|reviewed|Twitchin|taxID:6239 7/12 3827 3843 .. 1 17 [] 10.3 0.026 Q8WZ42|reviewed|Titin|taxID:9606 19/22 28167 28182 .. 1 17 [] 9.3 0.051 A2ASS6|reviewed|Titin|taxID:10090 6/18 21348 21364 .. 1 17 [] 9.0 0.06 Q8WZ42|reviewed|Titin|taxID:9606 7/22 20486 20502 .. 1 17 [] 9.0 0.06 Q23551|reviewed|Twitchin|taxID:6239 8/12 4415 4431 .. 1 17 [] 6.6 0.29 A2ASS6|reviewed|Titin|taxID:10090 3/18 18577 18593 .. 1 17 [] 6.6 0.3 Q8WZ42|reviewed|Titin|taxID:9606 3/22 17715 17731 .. 1 17 [] 6.6 0.3 Q23551|reviewed|Twitchin|taxID:6239 11/12 5103 5119 .. 1 17 [] 6.2 0.38 Q23551|reviewed|Twitchin|taxID:6239 9/12 4707 4723 .. 1 17 [] 6.2 0.38 Q8WZ42|reviewed|Titin|taxID:9606 18/22 28064 28080 .. 1 17 [] 6.0 0.44 A2ASS6|reviewed|Titin|taxID:10090 9/18 22333 22348 .. 1 17 [] 5.5 0.59 Q8WZ42|reviewed|Titin|taxID:9606 10/22 21471 21486 .. 1 17 [] 5.5 0.59 A2ASS6|reviewed|Titin|taxID:10090 1/18 15843 15859 .. 1 17 [] 5.2 0.72 Q8WZ42|reviewed|Titin|taxID:9606 1/22 14981 14997 .. 1 17 [] 5.2 0.72 Q23551|reviewed|Twitchin|taxID:6239 3/12 2357 2373 .. 1 17 [] 5.1 0.8 Q23551|reviewed|Twitchin|taxID:6239 10/12 4808 4824 .. 1 17 [] 3.7 1.9 Q8WZ42|reviewed|Titin|taxID:9606 16/22 27082 27097 .. 1 17 [] 3.7 2 Q8WZ42|reviewed|Titin|taxID:9606 20/22 29050 29066 .. 1 17 [] 3.5 2.2 Q23551|reviewed|Twitchin|taxID:6239 1/12 1766 1781 .. 1 17 [] 3.3 2.6 A2ASS6|reviewed|Titin|taxID:10090 16/18 29912 29928 .. 1 17 [] 3.2 2.8 A2ASS6|reviewed|Titin|taxID:10090 7/18 21450 21466 .. 1 17 [] 2.8 3.5 Q8WZ42|reviewed|Titin|taxID:9606 8/22 20588 20604 .. 1 17 [] 2.8 3.5 A2ASS6|reviewed|Titin|taxID:10090 11/18 24699 24715 .. 1 17 [] 2.7 3.7 Q8WZ42|reviewed|Titin|taxID:9606 13/22 23837 23853 .. 1 17 [] 2.7 3.7 Q23551|reviewed|Twitchin|taxID:6239 4/12 2649 2665 .. 1 17 [] 2.7 3.8 A2ASS6|reviewed|Titin|taxID:10090 17/18 31000 31016 .. 1 17 [] 2.7 3.8 A2ASS6|reviewed|Titin|taxID:10090 15/18 29029 29044 .. 1 17 [] 2.6 4.1 Q23551|reviewed|Twitchin|taxID:6239 6/12 3533 3549 .. 1 17 [] 2.4 4.6 A2ASS6|reviewed|Titin|taxID:10090 8/18 22036 22052 .. 1 17 [] 2.2 5.1 Q8WZ42|reviewed|Titin|taxID:9606 9/22 21174 21190 .. 1 17 [] 2.2 5.1 Q23551|reviewed|Twitchin|taxID:6239 12/12 5502 5518 .. 1 17 [] 2.0 5.9 Q8WZ42|reviewed|Titin|taxID:9606 21/22 30139 30154 .. 1 17 [] 2.0 6 Q23551|reviewed|Twitchin|taxID:6239 5/12 3240 3256 .. 1 17 [] 1.7 7.2 A2ASS6|reviewed|Titin|taxID:10090 12/18 27744 27759 .. 1 17 [] 1.2 10 Q8WZ42|reviewed|Titin|taxID:9606 15/22 26882 26897 .. 1 17 [] 1.2 10 A2ASS6|reviewed|Titin|taxID:10090 13/18 28827 28842 .. 1 17 [] 1.2 10 Q8WZ42|reviewed|Titin|taxID:9606 17/22 27965 27980 .. 1 17 [] 1.2 10 A2ASS6|reviewed|Titin|taxID:10090 5/18 20952 20968 .. 1 17 [] 0.7 14 Q8WZ42|reviewed|Titin|taxID:9606 6/22 20090 20106 .. 1 17 [] 0.7 14 A2ASS6|reviewed|Titin|taxID:10090 4/18 20157 20172 .. 1 17 [] 0.7 14 Q8WZ42|reviewed|Titin|taxID:9606 5/22 19295 19310 .. 1 17 [] 0.7 14 A2ASS6|reviewed|Titin|taxID:10090 10/18 23416 23431 .. 1 17 [] 0.5 16 Q8WZ42|reviewed|Titin|taxID:9606 11/22 22554 22569 .. 1 17 [] 0.5 16 A2ASS6|reviewed|Titin|taxID:10090 14/18 28926 28942 .. 1 17 [] 0.5 16 A2ASS6|reviewed|Titin|taxID:10090 18/18 31101 31117 .. 1 17 [] 0.4 17 Q8WZ42|reviewed|Titin|taxID:9606 22/22 30239 30255 .. 1 17 [] 0.4 17 Q8WZ42|reviewed|Titin|taxID:9606 12/22 23635 23651 .. 1 17 [] 0.3 18 Q8WZ42|reviewed|Titin|taxID:9606 14/22 25801 25816 .. 1 17 [] 0.3 18 Q8WZ42|reviewed|Titin|taxID:9606 4/22 18603 18618 .. 1 17 [] 0.2 19 Alignments of top-scoring domains: Q8WZ42|reviewed|Titin|taxID:9606: domain 2 of 22, from 15478 to 15493: score 12.2, E = 0.0077 *->rfrVacvnkagqgpYse<-* frV+ vnk+g g+Y+e Q8WZ42|rev 15478 -FRVKAVNKVGGGEYIE 15493 A2ASS6|reviewed|Titin|taxID:10090: domain 2 of 18, from 16340 to 16355: score 12.1, E = 0.0079 *->rfrVacvnkagqgpYse<-* frV+ vnk+g g+Y+e A2ASS6|rev 16340 -FRVKAVNKIGGGEYIE 16355 Q23551|reviewed|Twitchin|taxID:6239: domain 2 of 12, from 2061 to 2077: score 10.3, E = 0.026 *->rfrVacvnkagqgpYse<-* +frV+ vnkag g++se Q23551|rev 2061 QFRVRAVNKAGPGQPSE 2077 Q23551|reviewed|Twitchin|taxID:6239: domain 7 of 12, from 3827 to 3843: score 10.3, E = 0.026 *->rfrVacvnkagqgpYse<-* +frV+ vnkag g++s+ Q23551|rev 3827 QFRVKAVNKAGPGKPSD 3843 Q8WZ42|reviewed|Titin|taxID:9606: domain 19 of 22, from 28167 to 28182: score 9.3, E = 0.051 *->rfrVacvnkagqgpYse<-* frV+ vn agqg+++e Q8WZ42|rev 28167 -FRVSAVNCAGQGEPIE 28182 A2ASS6|reviewed|Titin|taxID:10090: domain 6 of 18, from 21348 to 21364: score 9.0, E = 0.06 *->rfrVacvnkagqgpYse<-* +frV+ +nkag g++s+ A2ASS6|rev 21348 EFRVTAINKAGPGKPSD 21364 Q8WZ42|reviewed|Titin|taxID:9606: domain 7 of 22, from 20486 to 20502: score 9.0, E = 0.06 *->rfrVacvnkagqgpYse<-* +frV+ +nkag g++s+ Q8WZ42|rev 20486 EFRVTAINKAGPGKPSD 20502 Q23551|reviewed|Twitchin|taxID:6239: domain 8 of 12, from 4415 to 4431: score 6.6, E = 0.29 *->rfrVacvnkagqgpYse<-* + rV vnkag g++s+ Q23551|rev 4415 EYRVVAVNKAGPGQPSD 4431 A2ASS6|reviewed|Titin|taxID:10090: domain 3 of 18, from 18577 to 18593: score 6.6, E = 0.3 *->rfrVacvnkagqgpYse<-* + rV+ vn +gqg++s A2ASS6|rev 18577 EYRVSAVNIVGQGKPSF 18593 Q8WZ42|reviewed|Titin|taxID:9606: domain 3 of 22, from 17715 to 17731: score 6.6, E = 0.3 *->rfrVacvnkagqgpYse<-* + rV+ vn +gqg++s Q8WZ42|rev 17715 EYRVSAVNIVGQGKPSF 17731 Q23551|reviewed|Twitchin|taxID:6239: domain 11 of 12, from 5103 to 5119: score 6.2, E = 0.38 *->rfrVacvnkagqgpYse<-* +frVa n agqg+Ys Q23551|rev 5103 EFRVAAYNAAGQGEYSV 5119 Q23551|reviewed|Twitchin|taxID:6239: domain 9 of 12, from 4707 to 4723: score 6.2, E = 0.38 *->rfrVacvnkagqgpYse<-* +frV+ vn ag+g++s+ Q23551|rev 4707 QFRVRAVNAAGHGEPSN 4723 Q8WZ42|reviewed|Titin|taxID:9606: domain 18 of 22, from 28064 to 28080: score 6.0, E = 0.44 *->rfrVacvnkagqgpYse<-* + rV vn agqgp+se Q8WZ42|rev 28064 QYRVCAVNAAGQGPFSE 28080 A2ASS6|reviewed|Titin|taxID:10090: domain 9 of 18, from 22333 to 22348: score 5.5, E = 0.59 *->rfrVacvnkagqgpYse<-* frV+ vn+ g+g++++ A2ASS6|rev 22333 -FRVSAVNHYGKGEPVQ 22348 Q8WZ42|reviewed|Titin|taxID:9606: domain 10 of 22, from 21471 to 21486: score 5.5, E = 0.59 *->rfrVacvnkagqgpYse<-* frV+ vn+ g+g++++ Q8WZ42|rev 21471 -FRVSAVNHYGKGEPVQ 21486 A2ASS6|reviewed|Titin|taxID:10090: domain 1 of 18, from 15843 to 15859: score 5.2, E = 0.72 *->rfrVacvnkagqgpYse<-* +frV+ vnkag ++se A2ASS6|rev 15843 SFRVRAVNKAGESEPSE 15859 Q8WZ42|reviewed|Titin|taxID:9606: domain 1 of 22, from 14981 to 14997: score 5.2, E = 0.72 *->rfrVacvnkagqgpYse<-* +frV+ vnkag ++se Q8WZ42|rev 14981 SFRVRAVNKAGESEPSE 14997 Q23551|reviewed|Twitchin|taxID:6239: domain 3 of 12, from 2357 to 2373: score 5.1, E = 0.8 *->rfrVacvnkagqgpYse<-* +frV+ vnkag g+ s+ Q23551|rev 2357 QFRVKAVNKAGPGEASD 2373 Q23551|reviewed|Twitchin|taxID:6239: domain 10 of 12, from 4808 to 4824: score 3.7, E = 1.9 *->rfrVacvnkagqgpYse<-* +frV vn ag g++s+ Q23551|rev 4808 EFRVIAVNSAGEGEPSK 4824 Q8WZ42|reviewed|Titin|taxID:9606: domain 16 of 22, from 27082 to 27097: score 3.7, E = 2 *->rfrVacvnkagqgpYse<-* frV+ vnk+g ++s+ Q8WZ42|rev 27082 -FRVKSVNKVGASDPSD 27097 Q8WZ42|reviewed|Titin|taxID:9606: domain 20 of 22, from 29050 to 29066: score 3.5, E = 2.2 *->rfrVacvnkagqgpYse<-* +frV+ vnk g g++ + Q8WZ42|rev 29050 QFRVSAVNKFGVGRPLD 29066 Q23551|reviewed|Twitchin|taxID:6239: domain 1 of 12, from 1766 to 1781: score 3.3, E = 2.6 *->rfrVacvnkagqgpYse<-* rV+ vnkag g++ + Q23551|rev 1766 -YRVKAVNKAGPGDPCD 1781 A2ASS6|reviewed|Titin|taxID:10090: domain 16 of 18, from 29912 to 29928: score 3.2, E = 2.8 *->rfrVacvnkagqgpYse<-* +fr++ vnk g g++ e A2ASS6|rev 29912 QFRISAVNKFGVGRPLE 29928 A2ASS6|reviewed|Titin|taxID:10090: domain 7 of 18, from 21450 to 21466: score 2.8, E = 3.5 *->rfrVacvnkagqgpYse<-* +frV vnk+g ++s+ A2ASS6|rev 21450 QFRVYAVNKIGYSDPSD 21466 Q8WZ42|reviewed|Titin|taxID:9606: domain 8 of 22, from 20588 to 20604: score 2.8, E = 3.5 *->rfrVacvnkagqgpYse<-* +frV vnk+g ++s+ Q8WZ42|rev 20588 QFRVYAVNKIGYSDPSD 20604 A2ASS6|reviewed|Titin|taxID:10090: domain 11 of 18, from 24699 to 24715: score 2.7, E = 3.7 *->rfrVacvnkagqgpYse<-* +fr+ +nkag g++ + A2ASS6|rev 24699 NFRICAINKAGVGEHAD 24715 Q8WZ42|reviewed|Titin|taxID:9606: domain 13 of 22, from 23837 to 23853: score 2.7, E = 3.7 *->rfrVacvnkagqgpYse<-* +fr+ +nkag g++ + Q8WZ42|rev 23837 NFRICAINKAGVGEHAD 23853 Q23551|reviewed|Twitchin|taxID:6239: domain 4 of 12, from 2649 to 2665: score 2.7, E = 3.8 *->rfrVacvnkagqgpYse<-* +fr++ nkag g++s+ Q23551|rev 2649 QFRISARNKAGTGDPSD 2665 A2ASS6|reviewed|Titin|taxID:10090: domain 17 of 18, from 31000 to 31016: score 2.7, E = 3.8 *->rfrVacvnkagqgpYse<-* +frV+ vnk g g ++e A2ASS6|rev 31000 TFRVRAVNKYGLGVPVE 31016 A2ASS6|reviewed|Titin|taxID:10090: domain 15 of 18, from 29029 to 29044: score 2.6, E = 4.1 *->rfrVacvnkagqgpYse<-* f V+ vn agqg++++ A2ASS6|rev 29029 -FQVSAVNCAGQGEPIT 29044 Q23551|reviewed|Twitchin|taxID:6239: domain 6 of 12, from 3533 to 3549: score 2.4, E = 4.6 *->rfrVacvnkagqgpYse<-* +frV+ nkag ++s+ Q23551|rev 3533 QFRVKALNKAGESTPSD 3549 A2ASS6|reviewed|Titin|taxID:10090: domain 8 of 18, from 22036 to 22052: score 2.2, E = 5.1 *->rfrVacvnkagqgpYse<-* +frV +n ag g++s A2ASS6|rev 22036 EFRVMAINLAGVGKPSL 22052 Q8WZ42|reviewed|Titin|taxID:9606: domain 9 of 22, from 21174 to 21190: score 2.2, E = 5.1 *->rfrVacvnkagqgpYse<-* +frV +n ag g++s Q8WZ42|rev 21174 EFRVMAINLAGVGKPSL 21190 Q23551|reviewed|Twitchin|taxID:6239: domain 12 of 12, from 5502 to 5518: score 2.0, E = 5.9 *->rfrVacvnkagqgpYse<-* +frV +n ag+g +s Q23551|rev 5502 EFRVVAINAAGKGIPSL 5518 Q8WZ42|reviewed|Titin|taxID:9606: domain 21 of 22, from 30139 to 30154: score 2.0, E = 6 *->rfrVacvnkagqgpYse<-* frV+ vnk g g ++e Q8WZ42|rev 30139 -FRVRAVNKYGPGVPVE 30154 Q23551|reviewed|Twitchin|taxID:6239: domain 5 of 12, from 3240 to 3256: score 1.7, E = 7.2 *->rfrVacvnkagqgpYse<-* +fr++ nkag g++s+ Q23551|rev 3240 EFRIRAKNKAGLGDPSD 3256 A2ASS6|reviewed|Titin|taxID:10090: domain 12 of 18, from 27744 to 27759: score 1.2, E = 10 *->rfrVacvnkagqgpYse<-* frV+ vnk g g++ e A2ASS6|rev 27744 -FRVTGVNKYGVGEPLE 27759 Q8WZ42|reviewed|Titin|taxID:9606: domain 15 of 22, from 26882 to 26897: score 1.2, E = 10 *->rfrVacvnkagqgpYse<-* frV+ vnk g g++ e Q8WZ42|rev 26882 -FRVTGVNKYGVGEPLE 26897 A2ASS6|reviewed|Titin|taxID:10090: domain 13 of 18, from 28827 to 28842: score 1.2, E = 10 *->rfrVacvnkagqgpYse<-* frV+ vnk g g++ e A2ASS6|rev 28827 -FRVRAVNKYGIGEPLE 28842 Q8WZ42|reviewed|Titin|taxID:9606: domain 17 of 22, from 27965 to 27980: score 1.2, E = 10 *->rfrVacvnkagqgpYse<-* frV+ vnk g g++ e Q8WZ42|rev 27965 -FRVRAVNKYGIGEPLE 27980 A2ASS6|reviewed|Titin|taxID:10090: domain 5 of 18, from 20952 to 20968: score 0.7, E = 14 *->rfrVacvnkagqgpYse<-* +fr+ nkag p+s+ A2ASS6|rev 20952 SFRIYALNKAGSSPPSK 20968 Q8WZ42|reviewed|Titin|taxID:9606: domain 6 of 22, from 20090 to 20106: score 0.7, E = 14 *->rfrVacvnkagqgpYse<-* +fr+ nkag p+s+ Q8WZ42|rev 20090 SFRIYALNKAGSSPPSK 20106 A2ASS6|reviewed|Titin|taxID:10090: domain 4 of 18, from 20157 to 20172: score 0.7, E = 14 *->rfrVacvnkagqgpYse<-* frV+ nk+g gp+ e A2ASS6|rev 20157 -FRVRAENKIGTGPPTE 20172 Q8WZ42|reviewed|Titin|taxID:9606: domain 5 of 22, from 19295 to 19310: score 0.7, E = 14 *->rfrVacvnkagqgpYse<-* frV+ nk+g gp+ e Q8WZ42|rev 19295 -FRVRAENKIGTGPPTE 19310 A2ASS6|reviewed|Titin|taxID:10090: domain 10 of 18, from 23416 to 23431: score 0.5, E = 16 *->rfrVacvnkagqgpYse<-* frV vnk g g++ e A2ASS6|rev 23416 -FRVMAVNKYGVGEPLE 23431 Q8WZ42|reviewed|Titin|taxID:9606: domain 11 of 22, from 22554 to 22569: score 0.5, E = 16 *->rfrVacvnkagqgpYse<-* frV vnk g g++ e Q8WZ42|rev 22554 -FRVMAVNKYGVGEPLE 22569 A2ASS6|reviewed|Titin|taxID:10090: domain 14 of 18, from 28926 to 28942: score 0.5, E = 16 *->rfrVacvnkagqgpYse<-* + rV vn ag gp+se A2ASS6|rev 28926 QYRVCAVNAAGVGPFSE 28942 A2ASS6|reviewed|Titin|taxID:10090: domain 18 of 18, from 31101 to 31117: score 0.4, E = 17 *->rfrVacvnkagqgpYse<-* +frV+ vn ag ++se A2ASS6|rev 31101 QFRVTAVNAAGNSEPSE 31117 Q8WZ42|reviewed|Titin|taxID:9606: domain 22 of 22, from 30239 to 30255: score 0.4, E = 17 *->rfrVacvnkagqgpYse<-* +frV+ vn ag ++se Q8WZ42|rev 30239 QFRVTAVNAAGNSEPSE 30255 Q8WZ42|reviewed|Titin|taxID:9606: domain 12 of 22, from 23635 to 23651: score 0.3, E = 18 *->rfrVacvnkagqgpYse<-* +fr+ vnk g g++ e Q8WZ42|rev 23635 TFRIMAVNKYGVGEPLE 23651 Q8WZ42|reviewed|Titin|taxID:9606: domain 14 of 22, from 25801 to 25816: score 0.3, E = 18 *->rfrVacvnkagqgpYse<-* frV vnk g g++ e Q8WZ42|rev 25801 -FRVMAVNKYGIGEPLE 25816 Q8WZ42|reviewed|Titin|taxID:9606: domain 4 of 22, from 18603 to 18618: score 0.2, E = 19 *->rfrVacvnkagqgpYse<-* frV+ nk+g gp+ + Q8WZ42|rev 18603 -FRVRAENKIGVGPPLD 18618 Histogram of all scores: score obs exp (one = represents 12 sequences) ----- --- --- -10 9 245|= * -9 161 621|============== * -8 558 763|=============================================== * -7 644 627|====================================================*= -6 665 415|==================================*===================== -5 501 244|====================*===================== -4 299 135|===========*============= -3 209 73|======*=========== -2 80 38|===*=== -1 26 20|=*= 0 25 10|*== 1 4 5|* 2 10 2|* 3 1 1|* 4 19 0|== 5 1 0|= 6 12 0|= > 7 12 -|= % Statistical details of theoretical EVD fit: mu = -7.6161 lambda = 0.6540 chi-sq statistic = 1557.2522 P(chi-square) = 0 Total sequences searched: 3236 Whole sequence top hits: tophits_s report: Total hits: 3 Satisfying E cutoff: 3 Total memory: 20K Domain top hits: tophits_s report: Total hits: 52 Satisfying E cutoff: 52 Total memory: 32K