# fasta34 FASTA searches a protein or DNA sequence data bank version 3.4t25 Nov 12, 2004 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 U00096, 74 nt vs bs_genome.fasta library 22602 residues in 1 sequences Altschul/Gish params: n0: 74 Lambda: 0.192 K: 0.177 H: 0.360 FASTA (3.47 Mar 2004) function [optimized, +5/-4 matrix (5:-4)] ktup: 6 join: 45, opt: 30, open/ext: -12/-4, width: 16 The best scores are: opt bits E(1) AL009126_GR|AL009126_GR Bacillus subtilis (str (4214630) [f] 76 24.4 0.074 AL009126_GR|AL009126_GR Bacillus subtilis (str (4214630) [r] 70 22.7 0.22 AL009126_GR|AL009126_GR Bacillus subtilis (str (4214630) [f] 60 20.0 1.1 AL009126_GR|AL009126_GR Bacillus subtilis (str (4214630) [r] 51 17.5 2 >>AL009126_GR|AL009126_GR Bacillus subtilis (strain 168) (4214630 nt) initn: 55 init1: 55 opt: 76 Z-score: 71.1 bits: 24.4 E(): 0.074 banded Smith-Waterman score: 76; 68.293% identity (68.293% similar) in 41 nt overlap (2-40:7100-7140) 10 20 U00096 TGGAGGCGCGTTCCGGAGTCGAACCGG--AC ::: : ::: ::: : :::::: AL0091 AATGAGCGTTATCGTGTCCCGTGCTCTTCCGGATGTTCGTGACGGTTTAAAACCGGTTCA 7070 7080 7090 7100 7110 7120 30 40 50 60 70 U00096 TAGACGGATTTGCAATCCGCTACATAACCGCTTTGTTAACGCGCC ::::::::::: AL0091 TAGACGGATTTTGTATGCAATGAATGATTTAGGCATGACAAGTGACAAGCCTTATAAAAA 7130 7140 7150 7160 7170 7180 >>AL009126_GR|AL009126_GR Bacillus subtilis (strain 168) (4214630 nt) rev-comp initn: 50 init1: 50 opt: 70 Z-score: 62.1 bits: 22.7 E(): 0.22 banded Smith-Waterman score: 70; 68.182% identity (68.182% similar) in 44 nt overlap (72-31:13215-13255) 70 60 50 U0009- GGCGCGTTAACAAAGCGGTTATGTAGCGGATT ::::: : :::: :::: : : : : : AL0091 GAGGATAGGGTAAGCGCGGTATTGGATATCCGCGT---CCAAGCAGTTAGGCTGGGAAAT 13190 13200 13210 13220 13230 13240 40 30 20 10 U0009- --GCAAATCCGTCTAGTCCGGTTCGACTCCGGAACGCGCCTCCA :::::::::: : AL0091 AGGCAAATCCGTTTCCCATAAGGCTGAGCTGTGATGGCGAGCGAAATATAGTAGCGAAGT 13250 13260 13270 13280 13290 13300 >>AL009126_GR|AL009126_GR Bacillus subtilis (strain 168) (4214630 nt) initn: 55 init1: 55 opt: 60 Z-score: 47.1 bits: 20.0 E(): 1.1 banded Smith-Waterman score: 60; 76.190% identity (76.190% similar) in 21 nt overlap (51-71:18023-18043) 30 40 50 60 70 U00096 GAACCGGACTAGACGGATTTGCAATCCGCTACATAACCGCTTTGTTAACGCGCC : :: :: ::::::::::: AL0091 GAATGCAAAAGCAAAAGAACTAGGCTTAACAGATTACAAATTTGTTAACGCAACAGGTCT 18000 18010 18020 18030 18040 18050 AL0091 TGAAAACAAAGATCTTCACGGGCATCAGCCTGAGGGGACAAGCGTAAATGAAGAAAGTGA 18060 18070 18080 18090 18100 18110 >>AL009126_GR|AL009126_GR Bacillus subtilis (strain 168) (4214630 nt) rev-comp initn: 70 init1: 45 opt: 51 Z-score: 33.6 bits: 17.5 E(): 2 banded Smith-Waterman score: 51; 91.667% identity (91.667% similar) in 12 nt overlap (45-34:3206-3217) 70 60 50 40 30 20 U0009- GGCGCGTTAACAAAGCGGTTATGTAGCGGATTGCAAATCCGTCTAGTCCGGTTCGACTC :: ::::::::: AL0091 TATTAGTGATATTTGAAAGAGGTCGATATAATGGCAAATCCGATTTCAATTGATACAGAG 3180 3190 3200 3210 3220 3230 10 U0009- CGGAACGCGCCTCCA AL0091 ATGATTACACTCGGACAATTCTTAAAATTAGCCGATGTGATTCAGTCTGGCGGTATGGCG 3240 3250 3260 3270 3280 3290 74 residues in 1 query sequences 22602 residues in 1 library sequences Scomplib [34t25] start: Mon Oct 2 20:23:36 2006 done: Mon Oct 2 20:24:52 2006 Total Scan time: 0.030 Total Display time: 0.000 Function used was FASTA [version 3.4t25 Nov 12, 2004]