TBLASTN 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= dcd_ecoli descripsion (193 letters) Database: 3g 1077 sequences; 12,619,654 total letters Searching...done Score E Sequences producing significant alignments: (bits) Value embl|AE006134|AE006134 Pasteurella multocida subsp. multocida st... 293 2e-80 embl|AE004769|AE004769 Pseudomonas aeruginosa PAO1, section 330 ... 56 6e-09 embl|AE004749|AE004749 Pseudomonas aeruginosa PAO1, section 310 ... 28 1.3 embl|AE004473|AE004473 Pseudomonas aeruginosa PAO1, section 34 o... 28 1.3 embl|AE004459|AE004459 Pseudomonas aeruginosa PAO1, section 20 o... 28 1.7 embl|AE004446|AE004446 Pseudomonas aeruginosa PAO1, section 7 of... 27 2.8 embl|AE004742|AE004742 Pseudomonas aeruginosa PAO1, section 303 ... 27 4.8 embl|AE004875|AE004875 Pseudomonas aeruginosa PAO1, section 436 ... 26 6.3 embl|AE004672|AE004672 Pseudomonas aeruginosa PAO1, section 233 ... 26 6.3 embl|AE004802|AE004802 Pseudomonas aeruginosa PAO1, section 363 ... 26 8.2 embl|AE004753|AE004753 Pseudomonas aeruginosa PAO1, section 314 ... 26 8.2 embl|AE004678|AE004678 Pseudomonas aeruginosa PAO1, section 239 ... 26 8.2 embl|AE004665|AE004665 Pseudomonas aeruginosa PAO1, section 226 ... 26 8.2 embl|AE004649|AE004649 Pseudomonas aeruginosa PAO1, section 210 ... 26 8.2 embl|AE004470|AE004470 Pseudomonas aeruginosa PAO1, section 31 o... 26 8.2 >embl|AE006134|AE006134 Pasteurella multocida subsp. multocida str. Pm70 section 101 of 204 of the complete genome. Length = 11667 Score = 293 bits (751), Expect = 2e-80 Identities = 141/193 (73%), Positives = 169/193 (87%) Frame = -3 Query: 1 MRLCDRDIEAWLDEGRLSINPRPPVERINGATVDVRLGNKFRTFRGHTAAFIDLSGPKDE 60 MRLCD DIE +LD+G +++ PRP ++INGAT+DVRLGN FR FR H+A +IDLSGPK++ Sbjct: 10843 MRLCDTDIERYLDDGIIALTPRPSNDKINGATIDVRLGNSFRVFREHSAPYIDLSGPKEQ 10664 Query: 61 VSAALDRVMSDEIVLDEGEAFYLHPGELALAVTLESVTLPADLVGWLDGRSSLARLGLMV 120 VSA L+ VMS+EI++ E +AF+LHPGELALA TLESV LPA+++GWLDGRSSLARLGLMV Sbjct: 10663 VSAQLESVMSEEILIGENDAFFLHPGELALATTLESVKLPANIIGWLDGRSSLARLGLMV 10484 Query: 121 HVTAHRIDPGWSGCIVLEFYNSGKLPLALRPGMLIGALSFEPLSGPAVRPYNRREDAKYR 180 HVTAHRIDPGW G IVLEF+NSGKLPLALRP M+IGALSFE LSG A RPY+ R++AKY+ Sbjct: 10483 HVTAHRIDPGWEGRIVLEFFNSGKLPLALRPNMVIGALSFEILSGYAARPYSSRKNAKYK 10304 Query: 181 NQQGAVASRIDKD 193 NQQ AVASRID+D Sbjct: 10303 NQQSAVASRIDED 10265 >embl|AE004769|AE004769 Pseudomonas aeruginosa PAO1, section 330 of 529 of the complete genome. Length = 13017 Score = 56.2 bits (134), Expect = 6e-09 Identities = 43/151 (28%), Positives = 71/151 (47%) Frame = -2 Query: 34 DVRLGNKFRTFRGHTAAFIDLSGPKDEVSAALDRVMSDEIVLDEGEAFYLHPGELALAVT 93 DVR +F+ F +A +D PK+ + + SD ++ P ALA T Sbjct: 674 DVRCAAEFKVFTNIHSAVVD---PKNFDEKSFVDINSDVCIIP--------PNSFALART 528 Query: 94 LESVTLPADLVGWLDGRSSLARLGLMVHVTAHRIDPGWSGCIVLEFYNSGKLPLALRPGM 153 +E +P D++ G+S+ AR G++V+VT ++P W G + LEF N+ LP + Sbjct: 527 VEYFRIPRDVLTICLGKSTYARCGIIVNVTP--LEPEWEGHVTLEFSNTTNLPAKIYANE 354 Query: 154 LIGALSFEPLSGPAVRPYNRREDAKYRNQQG 184 + + F S A + KY+ Q+G Sbjct: 353 GVAQMLFLQ-SDEACEVSYKDRGGKYQGQRG 264 Score = 27.3 bits (59), Expect = 2.8 Identities = 24/63 (38%), Positives = 30/63 (47%), Gaps = 4/63 (6%) Frame = -2 Query: 63 AALDRVMSDEIVLDEGEAFYLHPGEL----ALAVTLESVTLPADLVGWLDGRSSLARLGL 118 A L + +E+VLD E L PG LAV L+S ADL G + R+ A L L Sbjct: 11387 AFLAELALEELVLDIDEL--LRPGNRQEHGVLAVALDSFGGDADLQGQVHSRAEAAGLLL 11214 Query: 119 MVH 121 H Sbjct: 11213 FEH 11205 >embl|AE004749|AE004749 Pseudomonas aeruginosa PAO1, section 310 of 529 of the complete genome. Length = 16841 Score = 28.5 bits (62), Expect = 1.3 Identities = 25/72 (34%), Positives = 32/72 (44%), Gaps = 10/72 (13%) Frame = -3 Query: 131 WSGCIVLEFYN--SGKLP-----LALRPGMLIGALSFEPLSGPAVRPYNRREDAKYRNQQ 183 W GC V + +G+LP L R G +PL+GPAV R A R QQ Sbjct: 12558 WPGCGVPGYGGRAAGRLPGRGGRLGKRTAGSAGGRLRQPLAGPAVPFRTHRLGAPGRTQQ 12379 Query: 184 G---AVASRIDK 192 G + A R D+ Sbjct: 12378 GRRRSAAQRADR 12343 >embl|AE004473|AE004473 Pseudomonas aeruginosa PAO1, section 34 of 529 of the complete genome. Length = 9953 Score = 28.5 bits (62), Expect = 1.3 Identities = 17/46 (36%), Positives = 26/46 (56%) Frame = -3 Query: 143 GKLPLALRPGMLIGALSFEPLSGPAVRPYNRREDAKYRNQQGAVAS 188 G P ALRPG+L+ A+ + P P + R ++R+QQG A+ Sbjct: 1848 GTDPAALRPGLLLAAVHPDAGDLPGHLPGSHRR--RHRHQQGVEAT 1717 >embl|AE004459|AE004459 Pseudomonas aeruginosa PAO1, section 20 of 529 of the complete genome. Length = 9932 Score = 28.1 bits (61), Expect = 1.7 Identities = 15/36 (41%), Positives = 19/36 (52%) Frame = +3 Query: 3 LCDRDIEAWLDEGRLSINPRPPVERINGATVDVRLG 38 L D ++A +DE LS P R NGA D+ LG Sbjct: 1809 LADLAVDALIDEAELSPKPALVDRRGNGAHADLHLG 1916 >embl|AE004446|AE004446 Pseudomonas aeruginosa PAO1, section 7 of 529 of the complete genome. Length = 19762 Score = 27.3 bits (59), Expect = 2.8 Identities = 20/69 (28%), Positives = 30/69 (43%) Frame = -1 Query: 60 EVSAALDRVMSDEIVLDEGEAFYLHPGELALAVTLESVTLPADLVGWLDGRSSLARLGLM 119 E++ LD V + D G L G+ + E V +DLV R ++ R G + Sbjct: 5017 ELAGQLDGVPGHPV--DPGGGGMLDAGQQVVQAMAELVEQGSDLVVGQQRRLAVHRRGEV 4844 Query: 120 VHVTAHRID 128 H HR+D Sbjct: 4843 AH*VGHRVD 4817 >embl|AE004742|AE004742 Pseudomonas aeruginosa PAO1, section 303 of 529 of the complete genome. Length = 12902 Score = 26.6 bits (57), Expect = 4.8 Identities = 8/15 (53%), Positives = 13/15 (86%) Frame = -3 Query: 6 RDIEAWLDEGRLSIN 20 RD+E W+ EGR+++N Sbjct: 2721 RDVEVWIAEGRVNVN 2677 >embl|AE004875|AE004875 Pseudomonas aeruginosa PAO1, section 436 of 529 of the complete genome. Length = 10429 Score = 26.2 bits (56), Expect = 6.3 Identities = 25/89 (28%), Positives = 35/89 (39%), Gaps = 10/89 (11%) Frame = -2 Query: 106 WLDGRSSLARLGLMVHVTA----------HRIDPGWSGCIVLEFYNSGKLPLALRPGMLI 155 W GRS++ RL L T R+ P +GC L + G+LP R G I Sbjct: 4065 WGRGRSAVTRLLLRCRPTR*PGHAEGVRRGRLRPRCAGCQGLYRADPGRLPRPWRSGGTI 3886 Query: 156 GALSFEPLSGPAVRPYNRREDAKYRNQQG 184 PL R + R D ++ +G Sbjct: 3885 AGGRCRPLRPGCARQH--RPDGRHLQGRG 3805 >embl|AE004672|AE004672 Pseudomonas aeruginosa PAO1, section 233 of 529 of the complete genome. Length = 10855 Score = 26.2 bits (56), Expect = 6.3 Identities = 13/25 (52%), Positives = 15/25 (60%) Frame = +1 Query: 105 GWLDGRSSLARLGLMVHVTAHRIDP 129 G L G +LARL + V A RIDP Sbjct: 8743 GLLGGEGALARLRAAIVVQARRIDP 8817 >embl|AE004802|AE004802 Pseudomonas aeruginosa PAO1, section 363 of 529 of the complete genome. Length = 10623 Score = 25.8 bits (55), Expect = 8.2 Identities = 12/29 (41%), Positives = 16/29 (55%) Frame = -3 Query: 27 RINGATVDVRLGNKFRTFRGHTAAFIDLS 55 R+ G VD RLG F GH AF +++ Sbjct: 4324 RLGGGVVDQRLGLLAGLFLGHVLAFHEIA 4238 >embl|AE004753|AE004753 Pseudomonas aeruginosa PAO1, section 314 of 529 of the complete genome. Length = 16268 Score = 25.8 bits (55), Expect = 8.2 Identities = 24/84 (28%), Positives = 34/84 (40%), Gaps = 11/84 (13%) Frame = +2 Query: 98 TLPADLVGWLDGRSSLARLGLMVHVTAHRI--------DPGWSGCIVLEF---YNSGKLP 146 TL A L+G L + R G+ A + + W +VL N+G L Sbjct: 15632 TLLAALLGLLFALPAAGRFGVPAQSLARLLLNALRAVPELVWGALMVLAAGLGQNAGTLA 15811 Query: 147 LALRPGMLIGALSFEPLSGPAVRP 170 LAL G ++G L E L +P Sbjct: 15812 LALHTGGVLGRLFAEALENTPAQP 15883 >embl|AE004678|AE004678 Pseudomonas aeruginosa PAO1, section 239 of 529 of the complete genome. Length = 11593 Score = 25.8 bits (55), Expect = 8.2 Identities = 19/72 (26%), Positives = 30/72 (41%) Frame = +3 Query: 71 DEIVLDEGEAFYLHPGELALAVTLESVTLPADLVGWLDGRSSLARLGLMVHVTAHRIDPG 130 D D GE P +L LA ++ + + G LDG + + + AHR+ Sbjct: 4245 DHPAADVGEQAQPAPAQLLLAAEWQAQAVGVERRGILDGDGDVGTVADVAEGGAHRLQ-- 4418 Query: 131 WSGCIVLEFYNS 142 +VLE + S Sbjct: 4419 -HVAVVLELHQS 4451 >embl|AE004665|AE004665 Pseudomonas aeruginosa PAO1, section 226 of 529 of the complete genome. Length = 14439 Score = 25.8 bits (55), Expect = 8.2 Identities = 14/38 (36%), Positives = 18/38 (47%) Frame = -2 Query: 143 GKLPLALRPGMLIGALSFEPLSGPAVRPYNRREDAKYR 180 G P RPG LIGA P+ P P + R ++R Sbjct: 128 GPRPARARPGQLIGATPLRPVL-PVSPPGDARHAGRFR 18 >embl|AE004649|AE004649 Pseudomonas aeruginosa PAO1, section 210 of 529 of the complete genome. Length = 23425 Score = 25.8 bits (55), Expect = 8.2 Identities = 15/55 (27%), Positives = 24/55 (43%) Frame = -2 Query: 130 GWSGCIVLEFYNSGKLPLALRPGMLIGALSFEPLSGPAVRPYNRREDAKYRNQQG 184 GW+GC G+ + +RPG L G L P ++ E+ + R +G Sbjct: 8682 GWAGCACGSMTQVGRSSVPVRPGGLGGRL-----------PSSKAEEVRARGVRG 8551 >embl|AE004470|AE004470 Pseudomonas aeruginosa PAO1, section 31 of 529 of the complete genome. Length = 12495 Score = 25.8 bits (55), Expect = 8.2 Identities = 11/22 (50%), Positives = 13/22 (59%) Frame = +3 Query: 148 ALRPGMLIGALSFEPLSGPAVR 169 A RPG + G L+ EPL P R Sbjct: 2292 AFRPGEVAGGLTGEPLRNPVAR 2357 Database: 3g Posted date: Oct 1, 2006 10:39 PM Number of letters in database: 12,619,654 Number of sequences in database: 1077 Lambda K H 0.320 0.139 0.422 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 3,492,195 Number of Sequences: 1077 Number of extensions: 59426 Number of successful extensions: 282 Number of sequences better than 10.0: 15 Number of HSP's better than 10.0 without gapping: 125 Number of HSP's successfully gapped in prelim test: 25 Number of HSP's that attempted gapping in prelim test: 154 Number of HSP's gapped (non-prelim): 164 length of query: 193 length of database: 4,206,551 effective HSP length: 88 effective length of query: 105 effective length of database: 4,111,775 effective search space: 431736375 effective search space used: 431736375 frameshift window, decay const: 40, 0.1 T: 13 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 54 (25.4 bits)