BLASTN 2.2.10 [Oct-19-2004]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= U00096 U00096.2 Escherichia coli K12 MG1655, complete genome.
         (74 letters)

Database: bs 
           1 sequences; 4,214,630 total letters

Searching.done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL009126_GR|AL009126_GR Bacillus subtilis (strain 168) chromosom...    30   0.20 

>AL009126_GR|AL009126_GR Bacillus subtilis (strain 168) chromosome, complete
               sequence.
          Length = 4214630

 Score = 30.2 bits (15), Expect = 0.20
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 59      gctttgttaacgcgc 73
               |||||||||||||||
Sbjct: 3695038 gctttgttaacgcgc 3695024



 Score = 28.2 bits (14), Expect = 0.79
 Identities = 14/14 (100%)
 Strand = Plus / Plus

                             
Query: 51      acataaccgctttg 64
               ||||||||||||||
Sbjct: 3010634 acataaccgctttg 3010647



 Score = 28.2 bits (14), Expect = 0.79
 Identities = 14/14 (100%)
 Strand = Plus / Plus

                             
Query: 61      tttgttaacgcgcc 74
               ||||||||||||||
Sbjct: 2989366 tttgttaacgcgcc 2989379



 Score = 26.3 bits (13), Expect = 3.1
 Identities = 16/17 (94%)
 Strand = Plus / Plus

                                
Query: 50      tacataaccgctttgtt 66
               |||| ||||||||||||
Sbjct: 4136009 tacacaaccgctttgtt 4136025



 Score = 26.3 bits (13), Expect = 3.1
 Identities = 13/13 (100%)
 Strand = Plus / Minus

                            
Query: 31      agacggatttgca 43
               |||||||||||||
Sbjct: 2322993 agacggatttgca 2322981



 Score = 26.3 bits (13), Expect = 3.1
 Identities = 13/13 (100%)
 Strand = Plus / Minus

                            
Query: 38      tttgcaatccgct 50
               |||||||||||||
Sbjct: 1672684 tttgcaatccgct 1672672



 Score = 26.3 bits (13), Expect = 3.1
 Identities = 13/13 (100%)
 Strand = Plus / Minus

                            
Query: 35      ggatttgcaatcc 47
               |||||||||||||
Sbjct: 1171500 ggatttgcaatcc 1171488


  Database: bs
    Posted date:  Oct 2, 2006  7:30 PM
  Number of letters in database: 4,214,630
  Number of sequences in database:  1
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 99
Number of Sequences: 1
Number of extensions: 99
Number of successful extensions: 7
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of query: 74
length of database: 4,214,630
effective HSP length: 14
effective length of query: 60
effective length of database: 4,214,616
effective search space: 252876960
effective search space used: 252876960
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 13 (26.3 bits)