########################################
# Program: needle
# Rundate: Sat Apr 14 2007 12:39:08
# Commandline: needle
#    [-asequence] 1OKC.fasta
#    [-bsequence] Q8JHI0.fasta
#    [-outfile] compare2.aln
#    -auto
# Align_format: srspair
# Report_file: compare2.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: 1OKC
# 2: Q8JHI0
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 298
# Identity:     262/298 (87.9%)
# Similarity:   284/298 (95.3%)
# Gaps:           1/298 ( 0.3%)
# Score: 1408.0
# 
#
#=======================================

1OKC               1 -SDQALSFLKDFLAGGVAAAISKTAVAPIERVKLLLQVQHASKQISAEKQ     49
                      |:.|:||.|||||||:||||||||||||||||||||||||||||:|:||
Q8JHI0             1 MSETAISFAKDFLAGGIAAAISKTAVAPIERVKLLLQVQHASKQITADKQ     50

1OKC              50 YKGIIDCVVRIPKEQGFLSFWRGNLANVIRYFPTQALNFAFKDKYKQIFL     99
                     ||||:|||||||||||||||||||||||||||||||||||||||||::||
Q8JHI0            51 YKGIMDCVVRIPKEQGFLSFWRGNLANVIRYFPTQALNFAFKDKYKKVFL    100

1OKC             100 GGVDRHKQFWRYFAGNLASGGAAGATSLCFVYPLDFARTRLAADVGKGAA    149
                     .|||:..||||||||||||||||||||||||||||||||||||||||..|
Q8JHI0           101 DGVDKRTQFWRYFAGNLASGGAAGATSLCFVYPLDFARTRLAADVGKAGA    150

1OKC             150 QREFTGLGNCITKIFKSDGLRGLYQGFNVSVQGIIIYRAAYFGVYDTAKG    199
                     :|||:|||||:.||.||||::||||||||||||||||||||||:||||||
Q8JHI0           151 EREFSGLGNCLVKISKSDGIKGLYQGFNVSVQGIIIYRAAYFGIYDTAKG    200

1OKC             200 MLPDPKNVHIIVSWMIAQTVTAVAGLVSYPFDTVRRRMMMQSGRKGADIM    249
                     |||||||.||:|||||||:|||||||.|||||||||||||||||||||||
Q8JHI0           201 MLPDPKNTHIVVSWMIAQSVTAVAGLASYPFDTVRRRMMMQSGRKGADIM    250

1OKC             250 YTGTVDCWRKIAKDEGPKAFFKGAWSNVLRGMGGAFVLVLYDEIKKFV    297
                     |:||:|||||||:|||.||||||||||||||||||||||||||:||.:
Q8JHI0           251 YSGTIDCWRKIARDEGGKAFFKGAWSNVLRGMGGAFVLVLYDELKKVI    298


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