RID: 2ZVKSVXX013 Job Title:poln_abpvr virus Program: BLASTP Query: POLN_ABPVR Q9DSN9 Replicase polyprotein (2.7.7.48) (3.4.22.-) ID: lcl|Query_2460509(amino acid) Length: 1906 Database: swissprot Non-redundant UniProtKB/SwissProt sequences Sequences producing significant alignments: Scientific Common Max Total Query E Per. Acc. Description Name Name Taxid Score Score cover Value Ident Len Accession RecName: Full=Replicase polyprotein [Acute bee paralysis virus... Acute bee pa... NA 1217067 3954 3954 100% 0.0 100.00 1906 Q9DSN9.1 RecName: Full=Replicase polyprotein; Contains: RecName:... Cricket para... NA 928300 395 572 75% 1e-110 32.65 1771 Q9IJX4.1 RecName: Full=Replicase polyprotein; Contains: RecName:... Drosophila C... NA 865617 386 566 82% 5e-108 33.93 1759 O36966.1 RecName: Full=Genome polyprotein; Contains: RecName:... Rice tungro ... NA 337080 240 240 33% 3e-62 28.46 3471 Q91PP5.1 RecName: Full=Genome polyprotein; Contains: RecName:... Rice tungro ... NA 337081 237 237 36% 3e-61 27.59 3473 Q83034.1 RecName: Full=RNA1 polyprotein; AltName: Full=Genome polyprote... Red clover m... NA 12262 176 176 30% 6e-43 28.36 1864 P35930.1 RecName: Full=RNA1 polyprotein; AltName: Full=Genome polyprote... Broad bean w... NA 76875 168 232 44% 2e-40 25.99 1870 Q9WNW0.1 RecName: Full=Genome polyprotein; Contains: RecName:... Parsnip yell... NA 33762 164 230 31% 4e-39 30.08 3027 Q05057.1 RecName: Full=RNA1 polyprotein; AltName: Full=Genome polyprote... Broad bean w... NA 649895 163 238 44% 9e-39 25.71 1842 Q76L40.1 RecName: Full=RNA1 polyprotein; AltName: Full=Genome polyprote... Andean potat... NA 12259 157 157 19% 5e-38 30.29 729 Q02941.1 RecName: Full=RNA1 polyprotein; AltName: Full=Genome polyprote... Cowpea sever... NA 31716 158 228 45% 2e-37 25.70 1858 P36312.1 RecName: Full=RNA1 polyprotein; AltName: Full=Genome polyprote... Cherry rasp ... NA 650137 158 158 32% 3e-37 26.01 2250 Q6EWG9.1 RecName: Full=RNA1 polyprotein; AltName: Full=P1; Contains:... Tomato rings... NA 12281 152 152 19% 2e-35 27.55 2197 P29150.2 RecName: Full=RNA1 polyprotein; AltName: Full=B RNA polyprotei... Cowpea mosai... NA 928299 151 208 26% 4e-35 29.66 1866 P03600.1 RecName: Full=RNA1 polyprotein; AltName: Full=Genome polyprote... Bean-pod mot... NA 31715 149 215 40% 2e-34 24.46 1850 Q9YJU5.1 RecName: Full=RNA1 polyprotein; AltName: Full=P1; Contains:... Blackcurrant... NA 65743 142 201 33% 1e-32 28.12 2094 Q8V5E0.1 RecName: Full=RNA1 polyprotein; AltName: Full=P1; Contains:... Cycas necrot... NA 173976 137 137 18% 7e-31 28.01 2336 Q8QVV0.1 RecName: Full=RNA1 polyprotein; AltName: Full=P1; Contains:... Grapevine fa... NA 12274 136 136 31% 1e-30 25.04 2284 P29149.1 RecName: Full=RNA1 polyprotein; AltName: Full=P1; Contains:... Satsuma dwar... NA 650481 128 179 39% 4e-28 24.75 2081 Q9WAL8.1 RecName: Full=RNA1 polyprotein; AltName: Full=P1; Contains:... Arabis mosai... NA 282063 123 123 19% 1e-26 27.62 2284 Q6W8W5.1 RecName: Full=Genome polyprotein; Contains: RecName: Full=Caps... Human hepati... NA 474341 122 193 30% 3e-26 28.31 2228 A5LGW7.1 RecName: Full=Genome polyprotein; Contains: RecName: Full=Caps... Human hepati... NA 470593 121 197 31% 5e-26 27.30 2228 Q9DWR1.4 RecName: Full=RNA1 polyprotein; AltName: Full=P1; Contains:... Beet ringspo... NA 191547 120 120 19% 9e-26 26.89 2264 P18522.1 RecName: Full=Genome polyprotein; Contains: RecName: Full=Caps... Human hepati... NA 470422 119 189 31% 2e-25 27.95 2227 Q67825.1 RecName: Full=Genome polyprotein; Contains: RecName: Full=Caps... Human hepati... NA 470592 119 190 31% 2e-25 27.69 2227 Q8V0N6.1 RecName: Full=Genome polyprotein; Contains: RecName: Full=Caps... Human hepati... NA 12100 119 189 31% 3e-25 27.58 2227 P13901.1 RecName: Full=Genome polyprotein; Contains: RecName: Full=Caps... Human hepati... NA 12098 118 189 31% 4e-25 27.95 2227 P08617.1 RecName: Full=RNA1 polyprotein; AltName: Full=P1; Contains:... Grapevine ch... NA 12273 117 117 18% 7e-25 25.91 2252 P13025.1 RecName: Full=Genome polyprotein; Contains: RecName: Full=Caps... Human hepati... NA 12099 117 189 31% 7e-25 27.69 2227 P06441.1 RecName: Full=Genome polyprotein; Contains: RecName: Full=Caps... Human hepati... NA 470424 117 117 20% 8e-25 27.69 2052 Q05794.2 RecName: Full=Genome polyprotein; Contains: RecName: Full=Caps... Human hepati... NA 470423 117 189 31% 8e-25 27.69 2227 A3FMB2.1 RecName: Full=Genome polyprotein; Contains: RecName: Full=Caps... Simian hepat... NA 12102 117 190 31% 9e-25 27.06 2230 P14553.2 RecName: Full=Genome polyprotein; Contains: RecName: Full=Caps... Human hepati... NA 470591 116 186 32% 1e-24 27.16 2225 Q5Y944.1 RecName: Full=RNA1 polyprotein; AltName: Full=P1; Contains:... Tomato black... NA 283677 114 114 18% 1e-23 26.74 2266 Q8B8X3.1 RecName: Full=RNA1 polyprotein; Contains: RecName:... Tomato torra... NA 686948 90.1 90.1 11% 2e-16 28.63 2158 A1XIP9.1 RecName: Full=Genome polyprotein; Contains: RecName: Full=Caps... Avian enceph... NA 475778 80.9 80.9 17% 1e-13 25.74 2134 Q9YLS4.1 RecName: Full=Genome polyprotein; Contains: RecName: Full=Caps... Avian enceph... NA 475780 80.5 80.5 17% 1e-13 25.74 2134 Q6WQ42.1 RecName: Full=Genome polyprotein; Contains: RecName: Full=Caps... Avian enceph... NA 475779 80.1 80.1 16% 2e-13 25.47 2134 Q6R325.1 RecName: Full=Genome polyprotein; Contains: RecName: Full=Caps... Cosavirus A ... NA 1554483 70.1 70.1 20% 2e-10 25.63 2124 B8XTP8.1 RecName: Full=Genome polyprotein; Contains: RecName: Full=Lead... Human klasse... NA 655603 68.9 129 43% 4e-10 22.81 2370 C6KEF6.1 RecName: Full=Genome polyprotein; Contains: RecName: Full=Lead... Salivirus NG-J1 NA 651733 64.7 126 33% 9e-09 24.78 2374 C5MSH2.2 RecName: Full=Genome polyprotein; Contains: RecName: Full=Lead... Mengo virus NA 12107 62.4 62.4 9% 4e-08 27.93 2293 P12296.3 RecName: Full=Genome polyprotein; Contains: RecName: Full=Lead... Encephalomyo... NA 12106 62.0 62.0 9% 6e-08 27.93 2292 P17594.2 RecName: Full=Genome polyprotein; Contains: RecName: Full=Lead... Seneca Valle... NA 686944 62.0 62.0 7% 6e-08 31.33 2181 Q155Z9.1 RecName: Full=Genome polyprotein; Contains: RecName: Full=Lead... Encephalomyo... NA 12105 61.6 61.6 9% 7e-08 27.93 2292 P17593.1 RecName: Full=Genome polyprotein; Contains: RecName: Full=Lead... cardiovirus A1 NA 2870365 60.5 60.5 9% 2e-07 27.37 2292 Q66765.1 RecName: Full=Genome polyprotein; Contains: RecName: Full=Lead... Encephalomyo... NA 12104 60.1 60.1 9% 2e-07 27.37 2290 P03304.1 RecName: Full=RNA1 polyprotein; AltName: Full=P1; Contains:... Tobacco ring... NA 282064 56.6 56.6 11% 2e-06 23.36 2304 Q88893.1 RecName: Full=Genome polyprotein; Contains: RecName:... Lordsdale virus NA 82658 51.2 51.2 7% 1e-04 28.87 1699 P54634.1 RecName: Full=Genome polyprotein; Contains: RecName: Full=P1... Lettuce mosa... NA 117132 50.4 50.4 10% 2e-04 25.39 3255 P31999.3 RecName: Full=Genome polyprotein; Contains: RecName: Full=P1... Lettuce mosa... NA 117131 49.7 49.7 9% 3e-04 24.44 3255 P89876.1 RecName: Full=Genome polyprotein; Contains: RecName:... Norovirus Hu... NA 524364 44.3 44.3 6% 0.013 27.87 1789 Q83883.1 RecName: Full=Genome polyprotein; Contains: RecName:... Southampton ... NA 37129 43.5 43.5 6% 0.026 27.87 1788 Q04544.2 Alignments: >RecName: Full=Replicase polyprotein [Acute bee paralysis virus strain Rothamsted] Sequence ID: Q9DSN9.1 Length: 1906 Range 1: 1 to 1906 Score:3954 bits(10255), Expect:0.0, Method:Compositional matrix adjust., Identities:1906/1906(100%), Positives:1906/1906(100%), Gaps:0/1906(0%) Query 1 MNFTKQPASLKYLSSMKLITSQDQDFFNFGEVSREFILEQAYVNGYDFHMLHQDMNCIGF 60 MNFTKQPASLKYLSSMKLITSQDQDFFNFGEVSREFILEQAYVNGYDFHMLHQDMNCIGF Sbjct 1 MNFTKQPASLKYLSSMKLITSQDQDFFNFGEVSREFILEQAYVNGYDFHMLHQDMNCIGF 60 Query 61 VLSIFDEDARDEYEYKDLNCEYHENLFDAVVDSEFDKIWPHLVLKYITYYPCSLNWRGMP 120 VLSIFDEDARDEYEYKDLNCEYHENLFDAVVDSEFDKIWPHLVLKYITYYPCSLNWRGMP Sbjct 61 VLSIFDEDARDEYEYKDLNCEYHENLFDAVVDSEFDKIWPHLVLKYITYYPCSLNWRGMP 120 Query 121 TIPIVYVSKHFWYELYRTGFLNKLYHCGSWTDILLLLSGDVETNPGPVETYKDLCRRKNI 180 TIPIVYVSKHFWYELYRTGFLNKLYHCGSWTDILLLLSGDVETNPGPVETYKDLCRRKNI Sbjct 121 TIPIVYVSKHFWYELYRTGFLNKLYHCGSWTDILLLLSGDVETNPGPVETYKDLCRRKNI 180 Query 181 RKRKSRIREEIKMQQHIDKIIGQENEEYKIINVNMQGIFSFNEEKEIIKSTAWKFNSTLD 240 RKRKSRIREEIKMQQHIDKIIGQENEEYKIINVNMQGIFSFNEEKEIIKSTAWKFNSTLD Sbjct 181 RKRKSRIREEIKMQQHIDKIIGQENEEYKIINVNMQGIFSFNEEKEIIKSTAWKFNSTLD 240 Query 241 KTNSIIDNLIPQLEETLAGFRKTYSKCESKIFGTISVVDVCVDLISALLQVSFAKPAMKI 300 KTNSIIDNLIPQLEETLAGFRKTYSKCESKIFGTISVVDVCVDLISALLQVSFAKPAMKI Sbjct 241 KTNSIIDNLIPQLEETLAGFRKTYSKCESKIFGTISVVDVCVDLISALLQVSFAKPAMKI 300 Query 301 ASLAVEVFRLIKKYVSNININIDKIKELLSYGKVALNNNNPIIHVTMQSNSPILEVLLQP 360 ASLAVEVFRLIKKYVSNININIDKIKELLSYGKVALNNNNPIIHVTMQSNSPILEVLLQP Sbjct 301 ASLAVEVFRLIKKYVSNININIDKIKELLSYGKVALNNNNPIIHVTMQSNSPILEVLLQP 360 Query 361 NIIVSAIFIALSVVFHKKFTYKKLGIEAMIKRLGDLGRAAKGCSDLNVVLNQAITNHMLE 420 NIIVSAIFIALSVVFHKKFTYKKLGIEAMIKRLGDLGRAAKGCSDLNVVLNQAITNHMLE Sbjct 361 NIIVSAIFIALSVVFHKKFTYKKLGIEAMIKRLGDLGRAAKGCSDLNVVLNQAITNHMLE 420 Query 421 HFGKNVLGLKQEDELKVLVEGYRNWCDEVRDLVGHKINSDGELDSKSIVENIMKDVYEIQ 480 HFGKNVLGLKQEDELKVLVEGYRNWCDEVRDLVGHKINSDGELDSKSIVENIMKDVYEIQ Sbjct 421 HFGKNVLGLKQEDELKVLVEGYRNWCDEVRDLVGHKINSDGELDSKSIVENIMKDVYEIQ 480 Query 481 RIENMYKKGLEISRNIAELKLPTKLTISFNTHMRYLTEVFKSVDTSGAFGNKPRTQPIVI 540 RIENMYKKGLEISRNIAELKLPTKLTISFNTHMRYLTEVFKSVDTSGAFGNKPRTQPIVI Sbjct 481 RIENMYKKGLEISRNIAELKLPTKLTISFNTHMRYLTEVFKSVDTSGAFGNKPRTQPIVI 540 Query 541 WLFGESGRGKSGMTWPLAIDLNNSLLDNVDEMRNFSKNIYMRNVEQEFWDNYQGQNIVCX 600 WLFGESGRGKSGMTWPLAIDLNNSLLDNVDEMRNFSKNIYMRNVEQEFWDNYQGQNIVCX Sbjct 541 WLFGESGRGKSGMTWPLAIDLNNSLLDNVDEMRNFSKNIYMRNVEQEFWDNYQGQNIVCX 600 Query 601 DDFGQMRDSSSNPNPEFMELIRTANIAPYPLHMAHLEDKRKTKFTSKVIIMTSNVFEQDV 660 DDFGQMRDSSSNPNPEFMELIRTANIAPYPLHMAHLEDKRKTKFTSKVIIMTSNVFEQDV Sbjct 601 DDFGQMRDSSSNPNPEFMELIRTANIAPYPLHMAHLEDKRKTKFTSKVIIMTSNVFEQDV 660 Query 661 NSLTFPDAFRRRVDLCAEVKNKDEFTKMCWSKSAGKMVQRLDKGKVKKITGDIHSTVPYI 720 NSLTFPDAFRRRVDLCAEVKNKDEFTKMCWSKSAGKMVQRLDKGKVKKITGDIHSTVPYI Sbjct 661 NSLTFPDAFRRRVDLCAEVKNKDEFTKMCWSKSAGKMVQRLDKGKVKKITGDIHSTVPYI 720 Query 721 VDLIDPESGEVYKTGLEYEEFLDMCLEKTSQCRDDSAKLNDFLMDYAEKRANRSREIDEV 780 VDLIDPESGEVYKTGLEYEEFLDMCLEKTSQCRDDSAKLNDFLMDYAEKRANRSREIDEV Sbjct 721 VDLIDPESGEVYKTGLEYEEFLDMCLEKTSQCRDDSAKLNDFLMDYAEKRANRSREIDEV 780 Query 781 CARTMDEAFVDAYDDVIDVNMQIETVDEMELIEPNKLREMIEQCSNKIVYTYEGIAVKIT 840 CARTMDEAFVDAYDDVIDVNMQIETVDEMELIEPNKLREMIEQCSNKIVYTYEGIAVKIT Sbjct 781 CARTMDEAFVDAYDDVIDVNMQIETVDEMELIEPNKLREMIEQCSNKIVYTYEGIAVKIT 840 Query 841 SLAFKLATLNYEEQWEQIKEMKYYVKVSSGVNYLKRVLSQGMKVCEEWMKEMINYVKEHP 900 SLAFKLATLNYEEQWEQIKEMKYYVKVSSGVNYLKRVLSQGMKVCEEWMKEMINYVKEHP Sbjct 841 SLAFKLATLNYEEQWEQIKEMKYYVKVSSGVNYLKRVLSQGMKVCEEWMKEMINYVKEHP 900 Query 901 WMTVSLILGTLIGILTVVGFWKWLCSGDKKKNPIKRHFINTGNVLILPDRELNTFWKNQE 960 WMTVSLILGTLIGILTVVGFWKWLCSGDKKKNPIKRHFINTGNVLILPDRELNTFWKNQE Sbjct 901 WMTVSLILGTLIGILTVVGFWKWLCSGDKKKNPIKRHFINTGNVLILPDRELNTFWKNQE 960 Query 961 SLDLRDMYINRVEEHIISLLKLQHKVVLVPKVTKYILTTVENHAKISDKIILITRNRYLN 1020 SLDLRDMYINRVEEHIISLLKLQHKVVLVPKVTKYILTTVENHAKISDKIILITRNRYLN Sbjct 961 SLDLRDMYINRVEEHIISLLKLQHKVVLVPKVTKYILTTVENHAKISDKIILITRNRYLN 1020 Query 1021 YQGKFVELICGEINQFFIDPETLDTNVEAFASADLKTFVQRKPIVIEGPEFVEAQTSGDQ 1080 YQGKFVELICGEINQFFIDPETLDTNVEAFASADLKTFVQRKPIVIEGPEFVEAQTSGDQ Sbjct 1021 YQGKFVELICGEINQFFIDPETLDTNVEAFASADLKTFVQRKPIVIEGPEFVEAQTSGDQ 1080 Query 1081 ITLRKQTQKVIEAFASSDAITMARKTPKFVESDDVVEVSMQMWKDQVAQKLITNRVLTNL 1140 ITLRKQTQKVIEAFASSDAITMARKTPKFVESDDVVEVSMQMWKDQVAQKLITNRVLTNL Sbjct 1081 ITLRKQTQKVIEAFASSDAITMARKTPKFVESDDVVEVSMQMWKDQVAQKLITNRVLTNL 1140 Query 1141 YKICLVKENGDMVPLLNGLFVRSNIMLAPGHLVGFLSDSDTIEIRNLFDVVFRVPWKDVK 1200 YKICLVKENGDMVPLLNGLFVRSNIMLAPGHLVGFLSDSDTIEIRNLFDVVFRVPWKDVK Sbjct 1141 YKICLVKENGDMVPLLNGLFVRSNIMLAPGHLVGFLSDSDTIEIRNLFDVVFRVPWKDVK 1200 Query 1201 KVDVVNAFGESKEAVLLCFPKFVCQHTDLVKHFQDSESMSKFKRCEVTLPVLRYSDKMNR 1260 KVDVVNAFGESKEAVLLCFPKFVCQHTDLVKHFQDSESMSKFKRCEVTLPVLRYSDKMNR Sbjct 1201 KVDVVNAFGESKEAVLLCFPKFVCQHTDLVKHFQDSESMSKFKRCEVTLPVLRYSDKMNR 1260 Query 1261 FLATLIECDKVEAYDRPYTLNDSSKGQYILRQGLEYTMPTTNGDCGAPLVINETQVIRKI 1320 FLATLIECDKVEAYDRPYTLNDSSKGQYILRQGLEYTMPTTNGDCGAPLVINETQVIRKI Sbjct 1261 FLATLIECDKVEAYDRPYTLNDSSKGQYILRQGLEYTMPTTNGDCGAPLVINETQVIRKI 1320 Query 1321 AGIHVAGDARGKAYAESISQKDLIRAFSKIDVSMQIQLDLDQTLNFNQQQXIIPPNAEFG 1380 AGIHVAGDARGKAYAESISQKDLIRAFSKIDVSMQIQLDLDQTLNFNQQQXIIPPNAEFG Sbjct 1321 AGIHVAGDARGKAYAESISQKDLIRAFSKIDVSMQIQLDLDQTLNFNQQQXIIPPNAEFG 1380 Query 1381 PEDLDFCDLPSLKMIPVGRLSEPLFEPGKTDIRPSLVYGKISEIKTKPAILRNVIVDGKI 1440 PEDLDFCDLPSLKMIPVGRLSEPLFEPGKTDIRPSLVYGKISEIKTKPAILRNVIVDGKI Sbjct 1381 PEDLDFCDLPSLKMIPVGRLSEPLFEPGKTDIRPSLVYGKISEIKTKPAILRNVIVDGKI 1440 Query 1441 VNIKHKNLKKCAMDTPYVSKEMTEEAFQLVKSVWLKGMRNELKKVLTYEEAICGNDSSEF 1500 VNIKHKNLKKCAMDTPYVSKEMTEEAFQLVKSVWLKGMRNELKKVLTYEEAICGNDSSEF Sbjct 1441 VNIKHKNLKKCAMDTPYVSKEMTEEAFQLVKSVWLKGMRNELKKVLTYEEAICGNDSSEF 1500 Query 1501 ISAINRSSSPGFPWIRDRIKGTKGKQGWFGAEGEYILDEDVFEAVKTRIQNAKNGVRTPV 1560 ISAINRSSSPGFPWIRDRIKGTKGKQGWFGAEGEYILDEDVFEAVKTRIQNAKNGVRTPV Sbjct 1501 ISAINRSSSPGFPWIRDRIKGTKGKQGWFGAEGEYILDEDVFEAVKTRIQNAKNGVRTPV 1560 Query 1561 MWVDTLKDERRPIEKVDQLKTRVFSNGPMDFSITFRMYYLGFIAHLMENRITNEVSIGTN 1620 MWVDTLKDERRPIEKVDQLKTRVFSNGPMDFSITFRMYYLGFIAHLMENRITNEVSIGTN Sbjct 1561 MWVDTLKDERRPIEKVDQLKTRVFSNGPMDFSITFRMYYLGFIAHLMENRITNEVSIGTN 1620 Query 1621 VYSQDWNKTVRKLKTMGPKVIAGDFSTFDGSLNVCIMEKFADLANEFYDDGSENALIRHV 1680 VYSQDWNKTVRKLKTMGPKVIAGDFSTFDGSLNVCIMEKFADLANEFYDDGSENALIRHV Sbjct 1621 VYSQDWNKTVRKLKTMGPKVIAGDFSTFDGSLNVCIMEKFADLANEFYDDGSENALIRHV 1680 Query 1681 LLMDVYNSTHICGDSVYMMTHSQPSGNPATTPLNCFINSMGLRMVFELCSKKYSALNGTK 1740 LLMDVYNSTHICGDSVYMMTHSQPSGNPATTPLNCFINSMGLRMVFELCSKKYSALNGTK Sbjct 1681 LLMDVYNSTHICGDSVYMMTHSQPSGNPATTPLNCFINSMGLRMVFELCSKKYSALNGTK 1740 Query 1741 CYVMKDFSKHVSIVSYGDDNVINFSDEVSEWFNMETITEAFEKLGFTYTDELKGKNGEVP 1800 CYVMKDFSKHVSIVSYGDDNVINFSDEVSEWFNMETITEAFEKLGFTYTDELKGKNGEVP Sbjct 1741 CYVMKDFSKHVSIVSYGDDNVINFSDEVSEWFNMETITEAFEKLGFTYTDELKGKNGEVP 1800 Query 1801 KWRTIEDVQYLKRKFRYDSKRKVWEAPLCMDTILEMPNWCRGSLDIQEGTKVNCENAIME 1860 KWRTIEDVQYLKRKFRYDSKRKVWEAPLCMDTILEMPNWCRGSLDIQEGTKVNCENAIME Sbjct 1801 KWRTIEDVQYLKRKFRYDSKRKVWEAPLCMDTILEMPNWCRGSLDIQEGTKVNCENAIME 1860 Query 1861 LSMHEEYVFDKWSKVISKAYQKATGDCLDISTYNGYAQERFLNYYL 1906 LSMHEEYVFDKWSKVISKAYQKATGDCLDISTYNGYAQERFLNYYL Sbjct 1861 LSMHEEYVFDKWSKVISKAYQKATGDCLDISTYNGYAQERFLNYYL 1906 >RecName: Full=Replicase polyprotein; Contains: RecName: Full=Protein 1A; AltName: Full=CrPV-1A; Contains: RecName: Full=Protein 2A; Contains: RecName: Full=Protein 2B; Contains: RecName: Full=Protein 2C; Contains: RecName: Full=Protein 3A; Contains: RecName: Full=Protein 3B; Contains: RecName: Full=3C-like protease; Contains: RecName: Full=RNA-directed RNA polymerase 3D-POL [Cricket paralysis virus Teleogryllus commodus/Australia/CrPVVIC/1968] Sequence ID: Q9IJX4.1 Length: 1771 Range 1: 883 to 1731 Score:395 bits(1014), Expect:1e-110, Method:Compositional matrix adjust., Identities:287/879(33%), Positives:438/879(49%), Gaps:84/879(9%) Query 1047 VEAFASADLKTFVQRKPIVIEGPEFVEAQTSGDQITLRKQTQKVIEAFASSDAITMARKT 1106 VE S D+KT KP VE +SGD T++ + KV E +S D+ T ++ Sbjct 883 VEVGGSGDVKT---TKP----AKTAVEVGSSGDSKTMKNKITKV-EVGSSGDSKTQKQRN 934 Query 1107 PKF-VESDDVVEVSMQMWKDQVAQKLITNRVLTNLYKICLVKEN---GDM--VPLLNGLF 1160 K V + E Q D A L+ + + N Y CL E G+M L F Sbjct 935 TKVEVGKELEKEAETQGCSDPAAHALVLDVLQKNTY--CLYYERMVKGEMKRYRLATATF 992 Query 1161 VRSNIMLAPGHLVGFLSDSDTIEIRNLF------DVVFRVP-----WKDVKKVDVVNAFG 1209 +R + + P H + L N++ D V VP + ++V++ A Sbjct 993 LRGWVCMMPYHFIETLYARKVAPSTNIYFSQPNCDDVIVVPVSHFIAPNAERVELTTACT 1052 Query 1210 E-------SKEAVLLCFPKFVCQ-HTDLVKHFQDSESMSKFKRC-EVTLPVLRYSD---- 1256 ++ VL+ + +C H D++KHF + + TL S Sbjct 1053 RIHYKDETPRDCVLVNLHRRMCHPHRDILKHFVKKSDQGNLRGVFQGTLATFHQSANELC 1112 Query 1257 KMNRFLATLIECDK-VEAYDRPYTLNDSSKGQYILRQGLEYTMPTTNGDCGAPLVINETQ 1315 + ++L + D+ + Y + D Y R EY PT G+CG+ + + + Sbjct 1113 RAYQWLQAIRPLDQEITIYHEDTDMFDYESESYTQRDCYEYNAPTQTGNCGSIVGLYNKR 1172 Query 1316 VIRKIAGIHVAGD-ARGKAYAESISQKDLIRAFSKIDVSMQIQLDLDQTLNFNQQQXIIP 1374 + RK+ G+H+ G+ + YA ++Q+ ++ ++++ LD N Q P Sbjct 1173 MERKLIGMHIPGNVSECHGYACPLTQEAIMDGLNRLE-------KLDPVNNITVQCCFEP 1225 Query 1375 PNAEFGPEDLDFCDLPSLKMIPVGRLSEPLFEPGKTDIRPSLVYGKISEIKTKPAIL-RN 1433 P+ +D + P K +G+ + + + KT + S +YG +S+ TKPA L R Sbjct 1226 PS---DIKDTMSGETPEGKFCAIGKSNIKVGQAVKTTLLKSCIYGMLSKPITKPAHLTRT 1282 Query 1434 VIVDGKIVNIKHKNLKKCAMDTPYVSKEMTEEAFQLVKSVWLKGMR-----NELKKVLTY 1488 + +G+IV+ K LKKC +DT + E+ E A VK V L N+ ++ LTY Sbjct 1283 RLPNGEIVDPLMKGLKKCGVDTAVLDAEIVESAALDVKQVVLTQYNSMLDVNKYRRFLTY 1342 Query 1489 EEAICGNDSSEFISAINRSSSPGFPWIRDRIKGTKGKQGWFGAEGEYILD----EDVFEA 1544 EEA G +F+ I R +SPG+ + + + GKQ W G+ +Y +++ Sbjct 1343 EEATQGTGDDDFMKGIARQTSPGYRYFQ-MPRKLPGKQDWMGSGEQYDFTSQRAQELRRD 1401 Query 1545 VKTRIQNAKNGVRTPVMWVDTLKDERRPIEKVDQLKTRVFSNGPMDFSITFRMYYLGFIA 1604 V+ I N G+ V++VDTLKDERRPIEKVD KTRVFS GP F + FR Y+L F A Sbjct 1402 VEELIDNCAKGIIKDVVFVDTLKDERRPIEKVDAGKTRVFSAGPQHFVVAFRKYFLPFAA 1461 Query 1605 HLMENRITNEVSIGTNVYSQDWNKTVRKLKTMGPKVIAGDFSTFDGSLNVCIMEKFA-DL 1663 +LM NRI NE+++GTNVYS DW + ++LK G KVIAGDF FDGSL + + F Sbjct 1462 YLMNNRIDNEIAVGTNVYSTDWERIAKRLKKHGNKVIAGDFGNFDGSL---VAQFFGQSC 1518 Query 1664 ANEFY-----------DDGSENALIRHVLLMDVYNSTHICGDSVYMMTHSQPSGNPATTP 1712 FY +DG N +I L + +S H GD+VYM THSQPSGNP T Sbjct 1519 GKSFYPWFKTFNDVNTEDGKRNLMICIGLWTHIVHSVHSYGDNVYMWTHSQPSGNPFTVI 1578 Query 1713 LNCFINSMGLRMVFELCSKKYSALNGTKCYVMKDFSKHVSIVSYGDDNVINFSDEVSEWF 1772 +NC NSM +R+V+ L ++K + + MK F ++VS++SYGDDN +N SD V EWF Sbjct 1579 INCLYNSMIMRIVWILLARKLAP----EMQSMKKFRENVSMISYGDDNCLNISDRVVEWF 1634 Query 1773 NMETITEAFEKLGFTYTDELKGKNGEVPKWRTIEDVQYLKRKFRYDSKRKVWEAPLCMDT 1832 N TI+E +++ YTDE GK G++ K+ ++ ++ +LK++F + + + APL D Sbjct 1635 NQITISEQMKEIKHEYTDE--GKTGDMVKFPSLSEIHFLKKRFVFSHQLQRTVAPLQKDV 1692 Query 1833 ILEMPNWCRGSLDIQEGTKVNCENAIMELSMHEEYVFDK 1871 I EM NW R ++D E +N A E+ H + + K Sbjct 1693 IYEMLNWTRNTIDPNEILMMNINTAFREIVYHGKSEYQK 1731 Range 2: 93 to 671 Score:177 bits(449), Expect:4e-43, Method:Compositional matrix adjust., Identities:179/634(28%), Positives:294/634(46%), Gaps:79/634(12%) Query 99 WPHLVLKYITYYPCSLNWRGMPTIPIVYVSKHF------WYELYRTGFLNKLYHCGSWTD 152 W LV K++ Y + ++ VS F W++ ++ N Sbjct 93 WKGLVWKFVQNYCPEHRYGSTFGNGLLIVSPRFFMDHLDWFQQWKLVSSNDECRAFLRKR 152 Query 153 ILLLLSGDVETNPGPVET---YKDLCRRKNIRKRKSRIREEIKMQQHIDKIIGQENEEYK 209 LL+SGDVE+NPGPV++ Y + IR K+ R + K+ I K+ +E K Sbjct 153 TQLLMSGDVESNPGPVQSRPVYACDNDPRAIRLEKALQRRDEKISTLIKKL----RQEIK 208 Query 210 IINVNMQGIFSFNEEKEIIKSTAWKFNSTLDKTNSIIDNLIPQLEETLAGFRKTYSKCES 269 + QG F ++ + K + N L + ++N +P L A + T Sbjct 209 NNRIYTQGFF---DDLKGAKGEVGQLNGNLTRICDFLENSLPTL---TAQIQTT------ 256 Query 270 KIFGTISVVDVCVDLISALLQVSFAKPAMKIASLAVEVFRLIKKYVSNININIDKIKELL 329 ++ D V+L LL+V+ I + V + + KKY + + + I + Sbjct 257 ----VLTTTDKYVNLKEDLLKVA-------ILLVLVRLLMVWKKYRAALIVIILFVMHFY 305 Query 330 SYGK----VALNNNNPIIHVTMQSNSPILE-VLLQP--NIIVSAIFIALSVVFHKKFTYK 382 + K + L+ + I+ T Q+ + LE V+ P + IF L+ KK K Sbjct 306 GFDKQILDIVLDLKDKILQTTTQAGTETLEEVVYHPWFDTCGKLIFAVLAFFAIKKIPGK 365 Query 383 KLGIEAMIKRLGDLGRAAKGCSDLNVVLNQAITNHMLEHFGKNVLGLKQEDELKVLV--- 439 + + I RL + +A +G ++ I ++ E+F +V DE+K +V Sbjct 366 Q-DWDNYISRLDRIPKAIEG--------SKKIVDYCSEYFNLSV------DEVKKVVLGK 410 Query 440 --EGYRNWCDEVRDLVGHKINSDGELDSKSIVENIMKDVYEIQRIENMYKKGLEISRNIA 497 +G + DE+ + +I +LD ++ I D ++E++YK+GL+ S Sbjct 411 ELKGTQGLYDEIH-VWAKEIRHYLDLDERN---KITLDTETAAKVEDLYKRGLKYS---- 462 Query 498 ELKLPTKLTISFNTHMRYLTE-VFKSVDTSGAFGNKPRTQPIVIWLFGESGRGKSGMTWP 556 E K+P + F T M + + +++ V S G P+ +PI +WL GESG GK+ M +P Sbjct 463 EEKIPDRDIARFITTMLFPAKSLYEQVLLSPVKGGGPKMRPITVWLTGESGIGKTQMIYP 522 Query 557 LAIDLNNSLLDNVDEMRNFSKNIYMRNVEQEFWDNYQGQNIVCXDDFGQMRDSSSNPNPE 616 L ID+ + + + + Y R VE E+WD Y GQ IV DD Q++D + PNPE Sbjct 523 LCIDILREM--GIVKPDAYKHQAYARQVETEYWDGYNGQKIVIYDDAFQLKDDKTKPNPE 580 Query 617 FMELIRTANIAPYPLHMAHLEDKRKTKFTSKVIIMTSNVFEQDVNSLTFPDAFRRRVDLC 676 E+IRT N P LHMA L+DK ++V++ T+N F+ + S+TFPDAF R+ Sbjct 581 IFEVIRTCNTFPQHLHMAALQDKNMYS-QAEVLLYTTNQFQVQLESITFPDAFYNRMKTH 639 Query 677 A-EVKNKDEFTKMCWSKSA-GKMVQRLDKGKVKK 708 A V+ K E K W ++A G+ LD K+ K Sbjct 640 AYRVQIKQE--KSIWVRNARGEEYNALDVTKLNK 671 >RecName: Full=Replicase polyprotein; Contains: RecName: Full=Protein 1A; Contains: RecName: Full=Protein 2A; Contains: RecName: Full=Protein 2B; Contains: RecName: Full=Protein 2C; Contains: RecName: Full=Protein 3A; Contains: RecName: Full=Protein 3B; Contains: RecName: Full=3C-like protease; Contains: RecName: Full=RNA-directed RNA polymerase 3D-POL [Drosophila C virus strain EB] Sequence ID: O36966.1 Length: 1759 Range 1: 935 to 1748 Score:386 bits(992), Expect:5e-108, Method:Compositional matrix adjust., Identities:285/840(34%), Positives:422/840(50%), Gaps:78/840(9%) Query 1112 SDDVVEVSM-QMWKDQVAQKLITNRVLTNLYKICLVKENGD-MVPLLNGLFVRSNIMLAP 1169 ++++V V++ Q D A L+ + N Y++ + GD L N FVR + P Sbjct 935 AEELVTVALTQGCSDDAAHNLMIDVFQKNTYRMSYFR--GDKRYQLGNCTFVRGWSFIMP 992 Query 1170 GHLVGF-----LSDSDTIEI-RNLFDVVFRVPWKDVKKVDVVNAF------------GES 1211 H V L + I + + + + + ++P V N + G+ Sbjct 993 YHFVQAVFARRLPPNTIISLSQQMSEDLMQIPLSHFFSAGVDNFYLTDNCVRLPFKNGDF 1052 Query 1212 KEAVLLCFPKFVCQ-HTDLVKHFQDSESMSKFKRCEVTLPVLRYSDKMNRF-----LATL 1265 ++ V++ +C H DLV+HF + K K + + M + L + Sbjct 1053 RDCVMVNLHSRMCTPHRDLVRHFILTSDQGKLKGSFSGAMATFHVNNMGLYRVYNWLNAV 1112 Query 1266 IECDKVEAYDRPYTLNDSSKGQYILRQGLEYTMPTTNGDCGAPLVINETQVIRKIAGIHV 1325 CDK P + + YI R EY PT GDCG+ + + + RKI G+H+ Sbjct 1113 RPCDKKIEIFHPEDGFEYPEESYIQRDCYEYNAPTRTGDCGSIIGLYNKYLERKIIGMHI 1172 Query 1326 AG-DARGKAYAESISQKDLIRAFS------KIDVSMQIQLDLDQTLNFNQQQXIIPPNAE 1378 AG DA YA ++Q+ L AFS K ++S Q ++ PN Sbjct 1173 AGNDAEEHGYACPLTQECLETAFSALVNKNKKNISSQFYYEI--------------PNM- 1217 Query 1379 FGPEDLDFCDLPSLKMIPVGRLSEPLFEPGKTDIRPSLVYGKISEIKTKPAILRNVIVDG 1438 + L +P K +G+ S + + + I PS +YGK+S KPA+L+ I++ Sbjct 1218 --VDPLGDSSVPEGKFYALGKSSIRVGQAVNSSIIPSRIYGKLSVPTMKPALLKPTILNN 1275 Query 1439 KIVNIKHKNLKKCAMDTPYVSKEMTEEAFQLVKSVWLKGMRNELKK-----VLTYEEAIC 1493 K+ N LKKC +DT +S + A Q V V L L K +LTYEEAI Sbjct 1276 KVHNPLLSGLKKCGVDTAVLSDDEVLSASQDVCRVMLNQYNKNLNKTKYQRILTYEEAIR 1335 Query 1494 GNDSSEFISAINRSSSPGFPWIRDRIKGTKGKQGWFGAEGEYILDEDVFEA----VKTRI 1549 G EF+ AINR++SPGFP+ + + + GKQ W G E+ + A V+ I Sbjct 1336 GTQDDEFMCAINRTTSPGFPYAQMK-RNAPGKQQWMGFGEEFDFTSNYALALRKDVEQLI 1394 Query 1550 QNAKNGVRTPVMWVDTLKDERRPIEKVDQLKTRVFSNGPMDFSITFRMYYLGFIAHLMEN 1609 ++ +G + V++VDTLKDERR I KV+ KTRVFS GP F + FR Y+L F A LM N Sbjct 1395 EDCASGKISNVIFVDTLKDERRDIAKVNVGKTRVFSAGPQHFVVAFRQYFLPFAAWLMHN 1454 Query 1610 RITNEVSIGTNVYSQDWNKTVRKLKTMGPKVIAGDFSTFDGSLNVCIM-----EKFADLA 1664 RI+NEV++GTNVYS DW + ++LKT G VIAGDF FDGSL I+ E F Sbjct 1455 RISNEVAVGTNVYSSDWERIAKRLKTKGSHVIAGDFGNFDGSLVAQILWAIFWEIFVVWL 1514 Query 1665 NEFYD-DGSENALIRHVLL---MDVYNSTHICGDSVYMMTHSQPSGNPATTPLNCFINSM 1720 +F D + SE I + L + +S HI D+VYM THSQPSGNP T +NC NS+ Sbjct 1515 KQFIDIENSEGKRILCICLGLWSHLVHSVHIYEDNVYMWTHSQPSGNPFTVIINCLYNSI 1574 Query 1721 GLRMVFELCSKKYSALNGTKCYVMKDFSKHVSIVSYGDDNVINFSDEVSEWFNMETITEA 1780 +R+ + +K+ + MK F+++V++++YGDDNV+N +V EWFN I+E Sbjct 1575 IMRLSWIRVMEKFQP----RLKSMKWFNEYVALITYGDDNVLNIDAKVVEWFNQINISEV 1630 Query 1781 FEKLGFTYTDELKGKNGEVPKWRTIEDVQYLKRKFRYDSKRKVWEAPLCMDTILEMPNWC 1840 ++ YTDE K G++ K R +ED+ +LKRKFR+ + + APL ++ I EM NW Sbjct 1631 MTEMRHEYTDE--AKTGDIVKSRKLEDIFFLKRKFRFSPELQRHVAPLKIEVIYEMLNWS 1688 Query 1841 RGSLDIQEGTKVNCENAIMELSMHEEYVFDKW-SKVISKAYQKATGDCLDISTYNGYAQE 1899 R S+D E N E A E+ H + +DK S V++ + + I TYN Y + Sbjct 1689 RRSIDPDEILMSNIETAFREVVYHGKEEYDKLRSAVLALKVPQELPENPQILTYNQYLHD 1748 Range 2: 84 to 820 Score:179 bits(455), Expect:7e-44, Method:Compositional matrix adjust., Identities:208/826(25%), Positives:354/826(42%), Gaps:125/826(15%) Query 153 ILLLLSGDVETNPGPVETYKDLCRRKNIRKRKSRIREEI-KMQQHIDKIIGQENEEYKII 211 +LLLLSGDVETNPGPV++ R + R +R+ + I + I +I + + K Sbjct 84 MLLLLSGDVETNPGPVQSRPVYYRYND--PRYTRLEKAIERRDDKIKTLIKELRRQIKNR 141 Query 212 NVNMQGIFSFNEEKEIIKSTAWKFNSTLDKTNSIIDNLIPQLEETLAGFRKTYSKCESKI 271 + QG+F K+I S K ++ N + + LE TL G + Sbjct 142 KIYSQGMFD-KLTKQI--SDGIKDGVGSEQMNGNLTRICDFLENTLPGLQANIQAT---- 194 Query 272 FGTISVVDVCVDLISALLQVSFAKPAMKI--------ASLAVEVFRLIKKYVSN---INI 320 I D V L ++++ +++ ASL V + + K Y + I++ Sbjct 195 --VIDTTDKYVSLKEDIMKIVLVILLVRLLMVWKKYRASLCVILIFIFKFYGFDQKLIDL 252 Query 321 NIDKIKELLSYGKVALNNNNPIIHVTMQSNSPILEVLLQPNIIVSAIFIALSVVFHKKFT 380 +D ++ S G + + H + I IF ++ + KK Sbjct 253 IMDLKNKIFSQGALEDTVEEVVYHPWFHTCGKI-------------IFAVMAFLTIKKIP 299 Query 381 YKKLGIEAMIKRLGDLGRAAKG-------CSDLNVVLNQAITNHMLEHFGKNVLGLKQED 433 K+ ++ I RL + ++ +G CS+ + N I +L GK L++ + Sbjct 300 GKQ-DWDSYITRLDRIPKSIEGAKKITDYCSEYFNIANDQIKMMVL---GKTKEELQRAN 355 Query 434 ELKVLVEGYRNWCDEVRDLVGHKINSDGELDSKSIVENIMKDVYEIQRIENMYKKGLEIS 493 L ++ W EVR + ELD ++ ++ D R+E ++ KGL+ Sbjct 356 GLYGEIQA---WAQEVRQYL--------ELDQRNKID---LDTETANRVEQLWIKGLKFK 401 Query 494 RNIAELKLPTKLTISFNTHMRYLTEVFKSVDTSGAFGNKPRTQPIVIWLFGESGRGKSGM 553 +E L +++ +T + ++++ V S G PR +PI +WL GESG GK+ M Sbjct 402 ---SEPLLSKEMSALVHTTLLPAKQLYEYVSCSPVKGGGPRMRPICLWLVGESGVGKTEM 458 Query 554 TWPLAIDLNNSLLDNVDEMRNFSKNIYMRNVEQEFWDNYQGQNIVCXDDFGQMRDSSSNP 613 +PL ID+ + + + +F +Y R VE EFWD Y+GQ IV DD Q +D + Sbjct 459 VYPLCIDVLREM--GMIKKDDFHHQVYGRQVETEFWDGYKGQKIVIYDDAFQKKDDKTAA 516 Query 614 NPEFMELIRTANIAPYPLHMAHLEDKRKTKFTSKVIIMTSNVFEQDVNSLTFPDAFRRRV 673 NPE E+IR+ N P LHMA L DK T +++++ T+N + + S+TFPDAF R+ Sbjct 517 NPEIFEVIRSCNTFPQHLHMAALHDK-NTFSAAELLLYTTNDYNVKLESITFPDAFFNRM 575 Query 674 -DLCAEVKNKDEFTKMCWSKSAGKMVQRLDKGKVKKITGDIHSTVPYIVDLIDPESGEV- 731 D+ +V K E+ ++GK +LDK K+ K T I +V ++ E + Sbjct 576 GDMAYKVSPKKEYGIETEKGNSGKTYLKLDKSKLDK-TKAIDLSVYEFQKIVRDEKSDAG 634 Query 732 ---YKTGLEYEEFLDMCLEKTSQCRDDSAKLNDFLMDYAEKRANRSREIDEVCARTMDEA 788 + L+YE+F + K + + S FL +YA + S E E Sbjct 635 WIDSGSPLDYEDFAKLVCSKWKEAKQSSMNKLKFLEEYAIRAQVGSEENSE--------- 685 Query 789 FVDAYDDVIDVNMQIETVDEMELIEPNKLREMIEQCSNKIVYTYEGIAVKITSLAFKLAT 848 + D D V D+ +++ + +E IE + Y T +T Sbjct 686 YGDCIDFVDDIAKRLQKGETLEEIE----------------FDYASDPEMFTQYYHFKST 729 Query 849 LNYEEQWEQIKEMKYYVKVSSGVNYLKRVLSQGMKVCEEWMKEMINYVKEHPWMTVSLIL 908 + +W++ K+ + + +S YL + + K+ + EHP +T IL Sbjct 730 IKPASRWQKYKD-RMDICLSDCKTYLAKKYEEIKKI-----------LAEHPILT---IL 774 Query 909 GTLIGILTVVGFWKWLC------------SGDKKKNPIKRHFINTG 942 G + L+ + + W SGD K + R + G Sbjct 775 GMIGVALSALAMYYWFSKSLDPVEAEVAPSGDAKTVRLPRKLVEIG 820 >RecName: Full=Genome polyprotein; Contains: RecName: Full=Putative leader protein; Contains: RecName: Full=Capsid protein 1; Short=CP-1; AltName: Full=22.5 kDa protein; AltName: Full=Coat protein 1; Contains: RecName: Full=Capsid protein 2; Short=CP-2; AltName: Full=26 kDa protein; AltName: Full=Coat protein 2; Contains: RecName: Full=Capsid protein 3; Short=CP-3; AltName: Full=31 kDa protein; AltName: Full=Coat protein 3; Contains: RecName: Full=Putative helicase; AltName: Full=Putative NTP-binding protein; Contains: RecName: Full=Probable picornain 3C-like protease; Short=3C-like protease; Contains: RecName: Full=Probable RNA-directed RNA polymerase [Rice tungro spherical virus (isolate Vt6)] Sequence ID: Q91PP5.1 Length: 3471 Range 1: 2752 to 3403 Score:240 bits(613), Expect:3e-62, Method:Compositional matrix adjust., Identities:189/664(28%), Positives:318/664(47%), Gaps:42/664(6%) Query 1258 MNRFLA-TLIEC----DKVEAYDR----PYTLNDSSKGQYILRQGLEYTMPTTNGDCGAP 1308 M+++L ++++C D +E + P + +++ G + + GL Y + G CGA Sbjct 2752 MSKYLVDSMLQCVHFLDSIELTEANVSVPTSYYEANGGIHTIISGLRYRVHCMPGFCGAA 2811 Query 1309 LVINETQVIRKIAGIHVAGDARGK--AYAESISQKDLIRAFSKIDVSMQIQLDLDQTLNF 1366 ++ + RKI G+HV+G R K YAE+++Q+ L+RA + + ++ + Sbjct 2812 IMRADATCYRKIIGMHVSG-LRNKCMGYAETLTQEHLMRAIETLKETGLLKHIPRGAIGA 2870 Query 1367 NQQQXIIPPNAEFGPEDLDFCDLPSLKMIPVGRLSEPLFEPG--KTDIRPSLVYGKISEI 1424 +++ +P +++ + L +L + VG+L L KT I S+++G I EI Sbjct 2871 GEEK--LPEHSK--KQSLSLEGKGNLGI--VGQLPAQLVPTSVTKTTICKSMIHGLIGEI 2924 Query 1425 KTKPAIL-----RNVIVDGKIVNIKHKNLKKCAMDTPYVSKEMTEEAFQLVKSVWLKGMR 1479 KT+P++L R G+ +K K + P+ ++E+ E L+K K Sbjct 2925 KTEPSVLSAWDRRLPFPPGEWDPMKDAVKKYGSYILPFPTEEIQEVENFLIKKFRRKENS 2984 Query 1480 NELKKVLTYEEAICGNDSSEFISAINRSSSPGFPWIRDRIKGTKGKQGWF--------GA 1531 + V + E I G D S+F S I +SPG+P+I R G +GK+ F G Sbjct 2985 RRTRNVNSLEVGINGIDGSDFWSPIEMKTSPGYPYILKRPSGAQGKKYLFEELEPYPSGR 3044 Query 1532 EGEYILDEDVFEAVKTRIQNAKNGVRTPVMWVDTLKDERRPIEKV-DQLKTRVFSNGPMD 1590 + D ++ E + + +GV+ +M ++ LKDERR + K+ ++ TR F+ + Sbjct 3045 PKYAMKDPELIENYERIKEEVTSGVKPSIMTMECLKDERRKLAKIYEKPATRTFTILSPE 3104 Query 1591 FSITFRMYYLGFIAHLMENRITNEVSIGTNVYSQDWNKTVRKLKTMGPKVIAGDFSTFDG 1650 +I FR Y+ F A +M R + +G N S +W+ + L + K AGD+S FDG Sbjct 3105 VNILFRQYFGDFAAMVMSTRREHFSQVGINPESMEWSDLINSLLRVNTKGFAGDYSKFDG 3164 Query 1651 SLNVCIMEKFADLANEFYDDGSENALIRHVLLMDVYNSTHICGDSVYMMTHSQPSGNPAT 1710 + I ++ N +YDDG NA RH L+ + + ICGD + + PSG T Sbjct 3165 IGSPAIYHSIVNVVNAWYDDGEVNARARHSLISSIVHRDGICGDLILRYSQGMPSGFAMT 3224 Query 1711 TPLNCFINS--MGLRMVFELCSKKYSALNGTKCYVMKDFSKHVSIVSYGDDNVINFSDEV 1768 N F+N M L + + S S KDF + IV+YGDDNV++ +E Sbjct 3225 VIFNSFVNYYFMALAWMSTVGSSLLSPQGSC-----KDFDTYCKIVAYGDDNVVSVHEEF 3279 Query 1769 SEWFNMETITEAFEKLGFTYTDELKGKNGEVPKWRTIEDVQYLKRKF-RYDSKRKVWEAP 1827 + +N++T+ G TYTD K + I + +LKR F R +S +W+AP Sbjct 3280 LDVYNLQTVAAYLSHFGVTYTDGDKNPIHMSKPYEDITKMSFLKRGFERVESSGFLWKAP 3339 Query 1828 LCMDTILEMPNWCRGSLDIQEGTKVNCENAIMELSMHEEYVFDKWSKVISKAYQKATGDC 1887 L +I E NW R E + N E+A+ E ++H FD + ++ A ++ Sbjct 3340 LDKTSIEERLNWIRDCPTPVEALEQNIESALHEAAIHGRDYFDDLVQRLNSALKRVMLPP 3399 Query 1888 LDIS 1891 DIS Sbjct 3400 TDIS 3403 >RecName: Full=Genome polyprotein; Contains: RecName: Full=Putative leader protein; Contains: RecName: Full=Capsid protein 1; Short=CP-1; AltName: Full=22.5 kDa protein; AltName: Full=Coat protein 1; Contains: RecName: Full=Capsid protein 2; Short=CP-2; AltName: Full=26 kDa protein; AltName: Full=Coat protein 2; Contains: RecName: Full=Capsid protein 3; Short=CP-3; AltName: Full=31 kDa protein; AltName: Full=Coat protein 3; Contains: RecName: Full=Putative helicase; AltName: Full=Putative NTP-binding protein; Contains: RecName: Full=Probable picornain 3C-like protease; Short=3C-like protease; Contains: RecName: Full=Probable RNA-directed RNA polymerase [Rice tungro spherical virus (isolate A)] Sequence ID: Q83034.1 Length: 3473 Range 1: 2708 to 3406 Score:237 bits(605), Expect:3e-61, Method:Compositional matrix adjust., Identities:197/714(28%), Positives:334/714(46%), Gaps:38/714(5%) Query 1201 KVDVVNAFGESKEAVLLCFPKFVCQHTDLVKHFQDSESMSKFKRCEVTLPVLRYS-DKMN 1259 +V +VN F +E V+ V + + +++ +K L + +YS D M Sbjct 2708 RVCLVNGF---QETVVWDLGPSVPPSRNYIDFIANADDWKNYKATSGALVMSKYSVDSML 2764 Query 1260 RFLATLIECDKVEA-YDRPYTLNDSSKGQYILRQGLEYTMPTTNGDCGAPLVINETQVIR 1318 + + L + EA P + +++ G + + GL Y + G CG ++ + R Sbjct 2765 QCVHFLDSIELTEANVSVPTSYYEANGGIHTIISGLRYRVHCMPGFCGRAIMRADATCFR 2824 Query 1319 KIAGIHVAGDARGK--AYAESISQKDLIRAFSKIDVSMQIQLDLDQTLNFNQQQXIIPPN 1376 KI G+HV+G R K YAE+++Q+ L++A + + ++ + +++ +P + Sbjct 2825 KIIGMHVSG-LRNKCMGYAETLTQEHLMQAIETLKETGLLKHIPKGAIGAGEEK--LPEH 2881 Query 1377 AEFGPEDLDFCDLPSLKMIPVGRLSEPLFEPG--KTDIRPSLVYGKISEIKTKPAIL--- 1431 ++ + L +L + VG+L+ L KT I S+++G I EIKT+P++L Sbjct 2882 SK--KQSLSLEGKGNLGI--VGQLTAQLVPTSVTKTTICKSMIHGLIGEIKTEPSVLSAW 2937 Query 1432 --RNVIVDGKIVNIKHKNLKKCAMDTPYVSKEMTEEAFQLVKSVWLKGMRNELKKVLTYE 1489 R G+ +K K + P+ ++E+ E L+K K + V + E Sbjct 2938 DRRLPFPPGEWDPMKDAVKKYGSYILPFPTEEIQEVENFLIKKFRRKENSRRTRNVNSLE 2997 Query 1490 EAICGNDSSEFISAINRSSSPGFPWIRDRIKGTKGKQGWF--------GAEGEYILDEDV 1541 I G D S+F S I +SPG+P+I R G +GK+ F G + D ++ Sbjct 2998 VGINGIDGSDFWSPIEMKTSPGYPYILKRPSGAQGKKYLFEELEPYPSGRPKYAMKDPEL 3057 Query 1542 FEAVKTRIQNAKNGVRTPVMWVDTLKDERRPIEKV-DQLKTRVFSNGPMDFSITFRMYYL 1600 E + + +GV+ +M ++ LKDERR + K+ ++ TR F+ + +I FR Y+ Sbjct 3058 IENYERIKEEVTSGVKPSIMTMECLKDERRKLAKIYEKPATRTFTILSPEVNILFRQYFG 3117 Query 1601 GFIAHLMENRITNEVSIGTNVYSQDWNKTVRKLKTMGPKVIAGDFSTFDGSLNVCIMEKF 1660 F A +M R + +G N S +W+ + L + K AGD+S FDG + I Sbjct 3118 DFAAMVMSTRREHFSQVGINPESMEWSDLINSLLRVNTKGFAGDYSKFDGIGSPAIYHSI 3177 Query 1661 ADLANEFYDDGSENALIRHVLLMDVYNSTHICGDSVYMMTHSQPSGNPATTPLNCFINS- 1719 ++ N +Y+DG NA RH L+ + + ICGD + + PSG T N F+N Sbjct 3178 VNVVNAWYNDGEVNARARHSLISSIVHRDGICGDLILRYSQGMPSGFAMTVIFNSFVNYY 3237 Query 1720 -MGLRMVFELCSKKYSALNGTKCYVMKDFSKHVSIVSYGDDNVINFSDEVSEWFNMETIT 1778 M L + + S S KDF + IV+YGDDNV++ +E + +N++T+ Sbjct 3238 FMALAWMSTVGSSLLSPQGSC-----KDFDTYCKIVAYGDDNVVSVHEEFLDVYNLQTVA 3292 Query 1779 EAFEKLGFTYTDELKGKNGEVPKWRTIEDVQYLKRKF-RYDSKRKVWEAPLCMDTILEMP 1837 G TYTD K + I + +LKR F R +S +W+APL +I E Sbjct 3293 AYLSHFGVTYTDGDKNPIHMSKPYEDITKMSFLKRGFERVESSGFLWKAPLDKTSIEERL 3352 Query 1838 NWCRGSLDIQEGTKVNCENAIMELSMHEEYVFDKWSKVISKAYQKATGDCLDIS 1891 NW R E + N E+A+ E ++H FD + ++ A + DIS Sbjct 3353 NWIRDCPTPVEALEQNIESALHEAAIHGRDYFDDLVRRLNSALTRVMLPPTDIS 3406 >RecName: Full=RNA1 polyprotein; AltName: Full=Genome polyprotein B; AltName: Full=P1; Contains: RecName: Full=Protease cofactor; AltName: Full=32 kDa protein; Contains: RecName: Full=Putative helicase; AltName: Full=58 kDa protein; AltName: Full=Membrane-binding protein; AltName: Full=NTP-binding protein; Short=NTB; Contains: RecName: Full=Viral genome-linked protein; AltName: Full=VPg; Contains: RecName: Full=Picornain 3C-like protease; Short=3C-like protease; AltName: Full=24 kDa protein; Contains: RecName: Full=RNA-directed RNA polymerase; AltName: Full=87 kDa protein [Red clover mottle virus] Sequence ID: P35930.1 Length: 1864 Range 1: 1088 to 1648 Score:176 bits(447), Expect:6e-43, Method:Compositional matrix adjust., Identities:171/603(28%), Positives:271/603(44%), Gaps:65/603(10%) Query 1286 GQY--ILRQGLEYTMPTTNGDCGAPLVINETQVIRKIAGIHVAGDARGKAYAESISQKDL 1343 G+Y + + Y PT DCG+ ++I KI GIHVAG Sbjct 1088 GEYRNTVSTSIRYEAPTVMSDCGS-MIITNVGGKTKIVGIHVAGR--------------- 1131 Query 1344 IRAFSKIDVSMQIQLDLDQTLNFNQQQXIIPPNAE----FGPEDLDFCDLPSLKMIPVGR 1399 D + + L L Q Q AE F P + D + + VG Sbjct 1132 -------DNKIGMASLLPPLLPCAQAQ-----GAEKYFNFYPIEYDAAE----GIARVGE 1175 Query 1400 LSEPLF--EPGKTDIRPSLVYGKISEIKTK-PAILRNVIVDGKIVNIKHKNLKKCAMDTP 1456 L L+ P KT + + + K P+IL V D ++ + H + C Sbjct 1176 LKPKLYIPLPKKTSLVKTPEEWHLGTPCDKVPSIL--VKGDPRLADTVHADYDPCLSGLT 1233 Query 1457 YVSKEMTE-------EAFQLVKSVWLKGMRN--ELKKVLTYEEAICGNDSSEFISAINRS 1507 S M+ E Q + W + EL +V T EA+ G D +++ I + Sbjct 1234 KYSTPMSPLDSVLLGETCQEILDEWFDCLPEGFELGEV-TINEALNGVDGVDYMDRIPLA 1292 Query 1508 SSPGFPWIRDRIKGTKGKQGWFGAEGE---YILDEDVFEAVKTRIQNAKNGVRTPVMWVD 1564 +S GFP + R +G KGKQ + +G I V EA +T + V T ++ ++ Sbjct 1293 TSEGFPHVMSREQGEKGKQRFVQGDGHIVSLIPGTSVHEAYETLSRTIATEVPT-LVGIE 1351 Query 1565 TLKDERRPIEKV-DQLKTRVFSNGPMDFSITFRMYYLGFIAHLMENRITNEVSIGTNVYS 1623 KDE+ P KV + KTR F+ PM+++I R Y+L F+ +M+ R +G N YS Sbjct 1352 CPKDEKLPFRKVFTKPKTRNFTILPMEYNILVRQYFLNFVRFIMKKRDVLPCQVGINPYS 1411 Query 1624 QDWNKTVRKLKTMGPKVIAGDFSTFDGSLNVCIMEKFADLANEFYDDGSENALIRHVLLM 1683 +W+ +LK+ G ++ D+S+FDG L+ IME AD+ N F G+ R LLM Sbjct 1412 MEWSIVASRLKSQGNDILCCDYSSFDGLLSKQIMEMMADMINRFCGGGTLICAKRKNLLM 1471 Query 1684 DVYNSTHICGDSVYMMTHSQPSGNPATTPLNCFINSMGLRMVFELCSKKYSALNGTKCYV 1743 + I DSV+ + PSG P T N N + +R ++L ++++A N YV Sbjct 1472 ACCSRLAISRDSVWRIECGIPSGFPLTVICNSIFNEILVRYHYKLLLQEHNAPN---MYV 1528 Query 1744 MKDFSKHVSIVSYGDDNVINFSDEVSEWFNMETITEAFEKLGFTYTDELKGKNGEVPKWR 1803 + F +S+V+YGDDN+I+ + V +F+ + +A + G TD K K ++R Sbjct 1529 -QSFKNLISMVTYGDDNLISVNAVVKPYFDGTKLKQAMARNGIIITDG-KDKTSATLEFR 1586 Query 1804 TIEDVQYLKRKFRYDSKRKVWEAPLCMDTILEMPNWCR-GSLDIQEGTKVNCENAIMELS 1862 +ED +LKR F S +W+AP ++ ++ + ++Q N N + EL Sbjct 1587 RLEDCDFLKRGFLKRSS-VLWDAPEEKASLWAQLHYVNVNNCEMQVAYMTNLVNVLRELY 1645 Query 1863 MHE 1865 MH+ Sbjct 1646 MHD 1648 >RecName: Full=RNA1 polyprotein; AltName: Full=Genome polyprotein B; Contains: RecName: Full=Protease cofactor; Contains: RecName: Full=Putative helicase; AltName: Full=Membrane-binding protein; AltName: Full=NTP-binding protein; Short=NTB; Contains: RecName: Full=Viral genome-linked protein; AltName: Full=VPg; Contains: RecName: Full=Picornain 3C-like protease; Short=3C-like protease; Contains: RecName: Full=RNA-directed RNA polymerase [Broad bean wilt virus 2] Sequence ID: Q9WNW0.1 Length: 1870 Range 1: 1096 to 1664 Score:168 bits(426), Expect:2e-40, Method:Compositional matrix adjust., Identities:157/604(26%), Positives:277/604(45%), Gaps:45/604(7%) Query 1272 EAYDRPYTLNDSSKGQYI--LRQGLEYTMPTTNGDCGAPLVINETQVIRKIAGIHVAGDA 1329 + +++ YTL + G+Y + Q L Y T GDCG+ L++ E + K+ G+HVA + Sbjct 1096 KVHNKAYTL---AHGEYRREIPQSLSYEASTVAGDCGS-LILAEIEGKFKLVGMHVAFNG 1151 Query 1330 RGKAYAESISQKDLIRAFSKIDVSMQIQLDLDQTLNFNQQQXIIPPNAEFGPEDLDFCDL 1389 R + + L + + D ++ Q + + + + P G D + Sbjct 1152 REGSASFMPYHASLDQKVGQGDFMLKYQ-------EWAEPKILGPGCRAMGLIDPEHALA 1204 Query 1390 PSLKMIPVGRLSEPLFEPGKTDIRPSLVYGKISEIKTKPAILRNVIVDGKIVNIKHKNLK 1449 S K V E D PS++ + P + V D + + Sbjct 1205 ASGKTTFV-ETPEEWHLDYPCDKLPSVL------ARGDPRLAGTVHAD---YDPFASGMS 1254 Query 1450 KCAMDT-PYVSKEMTEEAFQLVKSVWLKGMRNELKKVLTYEEAICGNDSSEFISAINRSS 1508 K A + P+ + + + +V+ +W + + + AI G ++ EF A+ + Sbjct 1255 KYAKEAGPFDAASLKQVCSGIVE-IWEDASADFPMDEVDLDTAINGLENVEFFDALVLGT 1313 Query 1509 SPGFPWIRDRIKGTKGKQGWFGAEGEY--ILDEDVFEAVKTRIQNAKNGVRTPVMW-VDT 1565 S GFP+ DR G KGK + E I DE V + + +K V P ++ ++ Sbjct 1314 SEGFPYRLDRGPGDKGKSRYVSGESGSLKITDEGVLSDIAWFEEVSKTQV--PDLYCIEC 1371 Query 1566 LKDERRPIEKV-DQLKTRVFSNGPMDFSITFRMYYLGFIAHLMENRITNEVSIGTNVYSQ 1624 +KDER PI KV + K+R+F+ PM ++I R +L F+ M+ R +G N YS+ Sbjct 1372 VKDERLPIRKVLHEPKSRLFTVLPMSYNIVIRKKFLNFVRFFMKRRDVLTAQVGINPYSR 1431 Query 1625 DWNKTVRKLKTMGPKVIAGDFSTFDGSLNVCIMEKFADL-ANEFYDDGSENALIRHVLLM 1683 +W + KL + G ++ D+S FDG L CIM + ++ A D I++ L++ Sbjct 1432 EWTRMANKLLSKGNNILCCDYSRFDGFLPKCIMNEIGNMIARLMKTDEVSRTQIKN-LML 1490 Query 1684 DVYNSTHICGDSVYMMTHSQPSGNPATTPLNCFINSMGLRMVFELCSKKYSALNGTKCYV 1743 + +C +Y + + PSG P T +N +N + ++ + C + + V Sbjct 1491 ACTSRYAMCNRVLYRVENGIPSGFPLTVIVNSILNEILVKYAYWHCFEDNPS-------V 1543 Query 1744 MKDFSKHVSIVSYGDDNVINFSDEVSEWFNMETITEAFEKLGFTYTDEL-KGKNGEVPKW 1802 +F HVS+V YGDDN+I+ SD +S F+ + E LG TD + K K G ++ Sbjct 1544 QSNFDAHVSMVVYGDDNLISVSDAISSRFDGNFLVSFMEGLGIKVTDGIDKTKVG--IEF 1601 Query 1803 RTIEDVQYLKRKFRYDSKRKVWEAPLCMDTILEMPNWCRG-SLDIQEGTKVNCENAIMEL 1861 R +E+ +LKR F+ S W +P+ +++ ++ + L++ E NC N + EL Sbjct 1602 RRLENCDFLKRSFKM-SPDGTWRSPMSKESLWPQLHFVKAKKLEMAEAYINNCNNILREL 1660 Query 1862 SMHE 1865 +H+ Sbjct 1661 WLHD 1664 Range 2: 399 to 632 Score:63.5 bits(153), Expect:2e-08, Method:Compositional matrix adjust., Identities:62/260(24%), Positives:115/260(44%), Gaps:32/260(12%) Query 419 LEHFGKNVLGLKQE---DELKVLVEGYRNWCDEVRDLVGHKINSDGELDSKSIVENIMKD 475 L VLG + + D +L E +W E +V + + E +S++ ++ Sbjct 399 LSDLAHKVLGFESQVLADLTILLGENVADWLSECDCMVSYML----EFNSRN------RE 448 Query 476 VYEIQRIENMYKKGLEISRNIAEL--KLPTKLTISFNTHMRYLTEVFKSVDTSGAFGNKP 533 +++ R+ + +KG I + + +++ + L E+ SV SG+ N Sbjct 449 IFD--RLSQLIEKGRLIRTGVLRTGHRGSSQVMALVTKALEKLIELHNSVVMSGS--NTT 504 Query 534 RTQPIVIWLFGESGRGKSGMTWPLAIDLNNSLLDNVDEMRNFSKNIYMRNVEQEFWDNYQ 593 R P +++ G SG GK+ + +AI+ + E + + IY RN + FW Y+ Sbjct 505 RKAPFMVFFTGASGTGKTSVVQRVAINW-------LQEEQLGTNEIYSRNGQDPFWSGYK 557 Query 594 GQNIVCXDDFGQMRDSSSNPNPEFMELIRTANIAPYPLHMAHLEDKRKTKFTSKVIIMTS 653 +V DDFG + ++SN E+I + PY MA L +K F S++++ + Sbjct 558 RHAVVTYDDFGAVPGTTSNE----AEIINVISRNPYATVMAGLAEK-GMYFDSRLVLASR 612 Query 654 NVFEQDVNSLTF-PDAFRRR 672 N + S +A+ RR Sbjct 613 NFLAANPESGVHDSEAYERR 632 >RecName: Full=Genome polyprotein; Contains: RecName: Full=Putative leader protein; Contains: RecName: Full=Capsid protein 1; Short=CP-1; AltName: Full=22.5 kDa protein; AltName: Full=Coat protein 1; Contains: RecName: Full=Capsid protein 2; Short=CP-2; AltName: Full=26 kDa protein; AltName: Full=Coat protein 2; Contains: RecName: Full=Capsid protein 3; Short=CP-3; AltName: Full=31 kDa protein; AltName: Full=Coat protein 3; Contains: RecName: Full=Putative helicase; AltName: Full=Putative NTP-binding protein; Contains: RecName: Full=Probable picornain 3C-like protease; Short=3C-like protease; Contains: RecName: Full=Probable RNA-directed RNA polymerase [Parsnip yellow fleck virus (isolate P-121)] Sequence ID: Q05057.1 Length: 3027 Range 1: 2366 to 2758 Score:164 bits(416), Expect:4e-39, Method:Compositional matrix adjust., Identities:120/399(30%), Positives:193/399(48%), Gaps:13/399(3%) Query 1492 ICGNDSSEFISAINRSSSPGFPWIRDRIKGTKGKQGWFGA--EGEYILDEDVFEAVKTRI 1549 I G D E+ +N S+S G+P I +R K GK+ F GE + EA Sbjct 2366 INGIDGVEYYEPLNMSTSEGYPLILNRPKDAHGKEYLFETMESGERRIKSAKLEAHYESY 2425 Query 1550 QNAKNGVRT-PVMWVDTLKDERRPIEKV-DQLKTRVFSNGPMDFSITFRMYYLGFIAHLM 1607 +A P++ ++ KDERR ++K+ ++ KTR+FS P++F++ R +L F +M Sbjct 2426 GHALQSTEPFPLICIECPKDERRALDKIYEKPKTRLFSILPVEFNMHARRLFLDFNVFVM 2485 Query 1608 ENRITNEVSIGTNVYSQDWNKTVRKLKTMGPKVIAGDFSTFDGSLNVCIMEKFADLANEF 1667 NR + + +G N +S++W+ L + P GDF+ FDG + ++LAN F Sbjct 2486 ANRHKHGIMVGINPHSREWSDLAISLASFSPYGFNGDFANFDGMFHPSSFSMVSELANIF 2545 Query 1668 YDDGSENALIRHVLLMDVYNSTHICGDSVYMMTHSQPSGNPATTPLNCFINSMGLRMVFE 1727 Y G+ + R L + N + ++ + PSG P T N FIN L+ + Sbjct 2546 Y--GNFLSTERDNLTRMLTNRFSLMKGAILRVPGGGPSGFPMTVIFNSFINLFYLQSAWI 2603 Query 1728 LCSKKYSALNGTKCYVMK-DFSKHVSIVSYGDDNVINFSDEVSEWFNMETITEA-FEKLG 1785 + ++ NG + +F K+V YGDDN++ EV W+N++T++EA F+ G Sbjct 2604 MLAR----FNGRQDISHPCNFPKYVRACVYGDDNIVAIKMEVLPWYNLQTVSEALFDYFG 2659 Query 1786 FTYTDELKGKNGEVPKWRTIEDVQYLKRKFRYDSK-RKVWEAPLCMDTILEMPNWCRGSL 1844 T TD K K E + I + +LKR F+ D ++ APL +I E W R Sbjct 2660 VTMTDGAKNKASEAKPYGKILEFDFLKRHFKADELIPSLFHAPLHKRSIEEQVYWIREGG 2719 Query 1845 DIQEGTKVNCENAIMELSMHEEYVFDKWSKVISKAYQKA 1883 + E + N ENA+ E H +++ I KA +A Sbjct 2720 NSLELLEANIENALYEAHHHGREYYEELKDQIKKAMNRA 2758 Range 2: 1403 to 1599 Score:65.5 bits(158), Expect:5e-09, Method:Compositional matrix adjust., Identities:60/211(28%), Positives:96/211(45%), Gaps:18/211(8%) Query 478 EIQRIENMYKKGLEISRNIAELKLPTKLTI---SFNTHMRYLTEVFKSVDTSGAFGNKPR 534 +I++I +Y KG+ + + + P + SF L E + S R Sbjct 1403 KIKQIRALYDKGVNVMGKLTMIDSPHLSRVCERSFRLCKELLDETHRCKGASST-----R 1457 Query 535 TQPIVIWLFGESGRGKSGMTWPLAIDLNNSLLDNVDEMRNFSKNIYMRNVEQEFWDNYQG 594 P + L+G G GKS + L D+ LD + E + + Y + +E+W Y G Sbjct 1458 VDPFHVSLYGSPGVGKSFVMGKLLDDV----LDFMSEPQ--ADRCYSKTPNEEYWSGYIG 1511 Query 595 QNIVCXDDFGQMRDSSSNPNPEFMELIRTANIAPYPLHMAHLEDKRKTKFTSKVIIMTSN 654 Q V DD GQ D S +P + ++I+ + + MA L +K +T FTSK I T+N Sbjct 1512 QTAVKCDDLGQ--DLSKGFSPTYNQIIQMKTNNCFIVPMADLANKGRT-FTSKYIFSTTN 1568 Query 655 VFEQDV-NSLTFPDAFRRRVDLCAEVKNKDE 684 V + L P AF RR ++ EV+ + + Sbjct 1569 VPGCGTKHGLADPGAFMRRRNIFVEVETEGD 1599 >RecName: Full=RNA1 polyprotein; AltName: Full=Genome polyprotein B; Contains: RecName: Full=Protease cofactor; Contains: RecName: Full=Putative helicase; AltName: Full=Membrane-binding protein; AltName: Full=NTP-binding protein; Short=NTB; Contains: RecName: Full=Viral genome-linked protein; AltName: Full=VPg; Contains: RecName: Full=Picornain 3C-like protease; Short=3C-like protease; Contains: RecName: Full=RNA-directed RNA polymerase [Broad bean wilt virus 1 ATCC PV132] Sequence ID: Q76L40.1 Length: 1842 Range 1: 1079 to 1632 Score:163 bits(412), Expect:9e-39, Method:Compositional matrix adjust., Identities:153/595(26%), Positives:270/595(45%), Gaps:60/595(10%) Query 1286 GQY--ILRQGLEYTMPTTNGDCGAPLVINETQVIRKIAGIHVAGDARGKAYAESISQKDL 1343 G+Y ++ L Y PT GDCG LV+ + K+ G+HVA D A Sbjct 1079 GEYRRVISHHLTYRNPTVAGDCGG-LVLAIIEGKCKLVGLHVASDGEEGA---------- 1127 Query 1344 IRAFSKIDVSMQIQLDLDQTLNFNQQQXIIPPNAEFGPEDLDFCDLPSLKMIPVGRLSEP 1403 + + D D + Q ++ + P+ L P K + + Sbjct 1128 ---------ASPVPWDPDFKVAQGQSDFLLSYDEWAVPKVLG----PGCKAVGIISPEHT 1174 Query 1404 LFEPGKTDIRPSLVYGKISEIKTK-PAILRNVIVDGKIVNIKHKNLKKCAMDTPYVSKEM 1462 + GKT + + +++ K P+IL V D ++ ++ + A+ +KE Sbjct 1175 VGSGGKTSFLETPIEWQLNRPCGKIPSIL--VKGDVRLAGTENADYDPFAVGMTKYAKEA 1232 Query 1463 T-------EEAFQLVKSVWLKGMRNELKKVLTYEEAICGNDSSEFISAINRSSSPGFPWI 1515 + + + W + E A+ G ++ E+ A+ S+S G+P+ Sbjct 1233 GPFEPNGLDRVCESIAETWHDASDGFEFGPVDLEAALNGIENMEYFDALVLSTSEGYPYR 1292 Query 1516 RDRIKGTKGKQGWFGAEGE----YILDEDVFEAVKTRIQNAKNGVRTPVMW-VDTLKDER 1570 DR G KGK + EGE I DE + + + +K V P ++ ++ +KDER Sbjct 1293 LDRKPGEKGKARY--VEGEPGNLEITDERILADIHWFEEISKTQV--PDLYCIECVKDER 1348 Query 1571 RPIEKV-DQLKTRVFSNGPMDFSITFRMYYLGFIAHLMENRITNEVSIGTNVYSQDWNKT 1629 P+ KV + K+R+F+ PM +++ R +L F+ +M+ R +G N YS+ W K Sbjct 1349 LPVRKVIKEPKSRLFTVLPMSYNLAIRKKFLNFVRFIMKRRDVLPCQVGINPYSRQWGKV 1408 Query 1630 VRKLKTMGPKVIAGDFSTFDGSLNVCIMEKFADL-ANEFYDDGSENALIRHVLLMDVYNS 1688 +L G ++ D+S FDG L CIM K A++ +N + G+E ++ L++ + Sbjct 1409 ADRLLEKGNSILCCDYSRFDGFLPKCIMVKIAEMFSNIVGETGAEREQTKN-LMLACCSR 1467 Query 1689 THICGDSVYMMTHSQPSGNPATTPLNCFINSMGLRMVFELCSKKYSALNGTKCYVMKDFS 1748 ICG +Y + + PSG P T +N +N + ++ + C + T+ + F Sbjct 1468 YAICGRVLYRVENGIPSGFPLTVIVNSILNEILIKYAYWKCFE-------TESLIRDHFD 1520 Query 1749 KHVSIVSYGDDNVINFSDEVSEWFNMETITEAFEKLGFTYTDEL-KGKNGEVPKWRTIED 1807 +V++V YGDDN+I+ S+ +S FN + LG TD + K K G ++RTIED Sbjct 1521 TYVAMVVYGDDNLISVSEAISSKFNGNFLVNFMCNLGIKVTDGVDKTKVG--IEFRTIED 1578 Query 1808 VQYLKRKFRYDSKRKVWEAPLCMDTILEMPNWCRG-SLDIQEGTKVNCENAIMEL 1861 +LKRKF+ ++ W + + + ++ + +++ E NC N + EL Sbjct 1579 CDFLKRKFK-ENADGTWSGVMAEEHLWPQLHFVKAKKVEMSEAYISNCNNILREL 1632 Range 2: 371 to 618 Score:75.1 bits(183), Expect:6e-12, Method:Compositional matrix adjust., Identities:71/274(26%), Positives:125/274(45%), Gaps:32/274(11%) Query 419 LEHFGKNVLGLKQE---DELKVLVEGYRNWCDEVRDLVGHKINSDGELDSKSIVENIMKD 475 L VLG + + D +L E +W DE ++ + + E +S + +D Sbjct 371 LCEMASKVLGFESQILADLSIILGENVADWLDECDCMLAYLL----EFNSNA------RD 420 Query 476 VYEIQRIENMYKKGLEISRNIAEL--KLPTKLTISFNTHMRYLTEVFKSVDTSGAFGNKP 533 +++ R+ + +KG I I + P+++ + LTE+ SV SGA N Sbjct 421 IFD--RLSQLIEKGKAIRMGILRTTHRGPSQVLSLVTKALDKLTELHNSVIMSGA--NST 476 Query 534 RTQPIVIWLFGESGRGKSGMTWPLAIDLNNSLLDNVDEMRNFSKNIYMRNVEQEFWDNYQ 593 R P +++ G+SG GK+ + +A + + + + S +Y RN FW Y+ Sbjct 477 RKTPFMLFFTGKSGVGKTSVVQRMAANW-------LQQEQLGSNEVYSRNGLDPFWSGYK 529 Query 594 GQNIVCXDDFGQMRDSSSNPNPEFMELIRTANIAPYPLHMAHLEDKRKTKFTSKVIIMTS 653 Q +V DDFG + S SN E+I + P+ + MA L++K F S++II +S Sbjct 530 RQAVVTYDDFGAVPGSVSNE----AEIINVVSSNPHSVMMADLKEK-GMYFDSRLIIASS 584 Query 654 NVFEQDVNSLTF-PDAFRRRVDLCAEVKNKDEFT 686 N + S +A+ RR + +V K++ Sbjct 585 NFLAANPESGVHDSEAYERRRHVVVQVSLKEDMA 618 >RecName: Full=RNA1 polyprotein; AltName: Full=Genome polyprotein B; AltName: Full=P1; Contains: RecName: Full=Picornain 3C-like protease; Short=3C-like protease; AltName: Full=24 kDa protein; Contains: RecName: Full=RNA-directed RNA polymerase; AltName: Full=87 kDa protein [Andean potato mottle virus] Sequence ID: Q02941.1 Length: 729 Range 1: 147 to 520 Score:157 bits(398), Expect:5e-38, Method:Compositional matrix adjust., Identities:116/383(30%), Positives:185/383(48%), Gaps:16/383(4%) Query 1489 EEAICGNDSSEFISAINRSSSPGFPWIRDRIKGTKGKQGWFGAEGE-YILDE--DVFEAV 1545 E AI G D E++ I +S+S GFP + R G KGK + +GE + L E V +A Sbjct 147 ETAINGIDMVEYMECIPKSTSEGFPHVLSRAPGEKGKMRFLEGDGEKFSLREGTSVKKAY 206 Query 1546 KTRIQNAKNGVRTPVMWVDTLKDERRPIEKV-DQLKTRVFSNGPMDFSITFRMYYLGFIA 1604 + V T V ++ KDE+ P+ K+ KTR FS PM++++ R +L F+ Sbjct 207 DLLQEEIDRSVPTLVA-IECPKDEKLPLRKIYTSPKTRCFSILPMEYNLLVRQKFLHFVR 265 Query 1605 HLMENRITNEVSIGTNVYSQDWNKTVRKLKTMGPKVIAGDFSTFDGSLNVCIMEKFADLA 1664 +M+ R +G N YS +W R+L+ +G ++ D+S+FDG ++ +M AD Sbjct 266 FMMKRRDVLPSQVGVNPYSLEWGAIARRLQEVGNSILCCDYSSFDGLMSSQVMSCIADTM 325 Query 1665 NEFYDDGSENALIRHVLLMDVYNSTHICGDSVYMMTHSQPSGNPATTPLNCFINSMGLRM 1724 N+F R LLM + + +V+ + PSG P T +N N + +R Sbjct 326 NDFMGGDVSLKRQRKNLLMACCSRFSVVKGNVWRVEGGIPSGFPLTVVMNGIFNELLVR- 384 Query 1725 VFELCSKKYSALNGTKCYVMKDFSKHVSIVSYGDDNVINFSDEVSEWFNMETITEAFEKL 1784 C KK G F ++ V YGDDN+I+ S + + FN + + E + Sbjct 385 ---YCFKKIMREGGATPLECSAFDSYIRFVVYGDDNLISVSPVIHDKFNGKLLKECMARF 441 Query 1785 GFTYTDELKGKNGEVP--KWRTIEDVQYLKRKFRYDSKRKVWEAPLCMDTILEMPNWCRG 1842 G T TD GK+ +P ++R +ED +LKR F S+ VW+AP ++ ++ Sbjct 442 GVTITD---GKDKTLPTLEFRPLEDCDFLKRGFIQRSEL-VWDAPEERSSLYTQLHYVST 497 Query 1843 SL-DIQEGTKVNCENAIMELSMH 1864 + +++ N N I EL MH Sbjct 498 KMQSLEDAYTGNLVNVIRELYMH 520 >RecName: Full=RNA1 polyprotein; AltName: Full=Genome polyprotein B; AltName: Full=P1; Contains: RecName: Full=Protease cofactor; AltName: Full=32 kDa protein; Contains: RecName: Full=Putative helicase; AltName: Full=58 kDa protein; AltName: Full=Membrane-binding protein; AltName: Full=NTP-binding protein; Short=NTB; Contains: RecName: Full=Viral genome-linked protein; AltName: Full=VPg; Contains: RecName: Full=Picornain 3C-like protease; Short=3C-like protease; AltName: Full=24 kDa protein; Contains: RecName: Full=RNA-directed RNA polymerase; AltName: Full=87 kDa protein [Cowpea severe mosaic virus (strain DG)] Sequence ID: P36312.1 Length: 1858 Range 1: 1086 to 1641 Score:158 bits(400), Expect:2e-37, Method:Compositional matrix adjust., Identities:155/603(26%), Positives:264/603(43%), Gaps:71/603(11%) Query 1287 QYILRQGLEYTMPTTNGDCGAPLVINETQVIRKIAGIHVAGDARGKAYAESISQKDLIRA 1346 Q I L+Y + T DCG+ L+I +KI GIH AG A +A + Q + Sbjct 1086 QTIFYSYLQYDVSTKAEDCGS-LIIATIDGRKKIIGIHTAGRANRSGFASYMPQVE---- 1140 Query 1347 FSKIDVSMQIQLDLDQTLNFNQQQXIIPPNAEFGPEDLDFCDLPSLKMIPVGRLSE---- 1402 IP A+ + DF + +G++ Sbjct 1141 --------------------------IPVQAQAAEKFFDFLEKEQHVTEGIGKVGNLKKG 1174 Query 1403 ---PLFEPGKTDIRPSLVYGKISEIKTK-PAILRNVIV-------DGKIVNIKHKNLKKC 1451 PL P KT++ + + KTK P+IL + + D + I+ Sbjct 1175 VWVPL--PTKTNLVETPKEWHLGTEKTKEPSILSSTDLRLGDKQYDPFVGGIQKYAEPMG 1232 Query 1452 AMDTP---YVSKEMTEEAFQLVKSVWLKGMRNELKKVLTYEEAICGNDSSEFISAINRSS 1508 +D +V+ ++ EE F V + + + + + AI G + E++ + ++ Sbjct 1233 ILDDEVLRHVATDIVEEWFDCVDP------QEDTFEEVDLQVAINGLEGMEYMERVPMAT 1286 Query 1509 SPGFPWIRDRIKGTKGKQGWFGAEGE---YILDEDVFEAVKTRIQNAKNGVRTPVMWVDT 1565 S GFP I R G KGK + +GE I V EA T + + V ++ ++ Sbjct 1287 SEGFPHILTRKSGEKGKGRFVYGDGEIFDLIPGTSVHEAYLTLEETCADTV-PALVGIEC 1345 Query 1566 LKDERRPIEKV-DQLKTRVFSNGPMDFSITFRMYYLGFIAHLMENRITNEVSIGTNVYSQ 1624 KDE+ P+ K+ ++ KTR F+ PM++++ R +L F+ +M+NR +G N Y Sbjct 1346 PKDEKLPLRKIYEKPKTRCFTVLPMEYNLVVRRKFLKFVVFIMKNRHRLSCQVGINPYGM 1405 Query 1625 DWNKTVRKLKTMGPKVIAGDFSTFDGSLNVCIMEKFADLANEFYDDGSENALIRHVLLMD 1684 +W++ L G ++ D+S+FDG L +M +++ NE S R LLM Sbjct 1406 EWSRLAMSLLEKGNNILCCDYSSFDGLLTKQVMHLMSEMINELCGGSSRLKQQRTNLLMA 1465 Query 1685 VYNSTHICGDSVYMMTHSQPSGNPATTPLNCFINSMGLRMVF-ELCSKKYSALNGTKCYV 1743 + +C V+ + PSG P T N N + +R + ++C + + + T Y Sbjct 1466 CCSRYALCKGEVWRVECGIPSGFPLTVICNSIFNELLVRYSYIKICQQ--ARVPATITY- 1522 Query 1744 MKDFSKHVSIVSYGDDNVINFSDEVSEWFNMETITEAFEKLGFTYTDELKGKNGEVPKWR 1803 FS V +V+YGDDN+++ ++ F+ + E + G T TD K K V +R Sbjct 1523 --GFSTFVKMVTYGDDNLLSVQSAITHVFDGTKLKEFLKLNGITITDG-KDKTSPVLNFR 1579 Query 1804 TIEDVQYLKRKFRYDSKRKVWEAPLCMDTILEMPNWC-RGSLDIQEGTKVNCENAIMELS 1862 +ED +LKR F+ +S VW P +++ ++ +L+ E VN N I EL Sbjct 1580 NLEDCDFLKRGFKKESD-VVWVGPEEKESLWAQLHYVTTNNLEKHEAYLVNVVNVIRELY 1638 Query 1863 MHE 1865 +H+ Sbjct 1639 LHD 1641 Range 2: 320 to 599 Score:69.3 bits(168), Expect:3e-10, Method:Compositional matrix adjust., Identities:83/309(27%), Positives:130/309(42%), Gaps:51/309(16%) Query 386 IEAMIKRL-----GDLGRAAKGCSDLNVVLNQAITN--------HMLEHFGKNVLGLKQ- 431 +E++ K L G L K C+ +N + A T ML +F +LGL+ Sbjct 320 LESLAKNLTNFCDGTLVSIGKTCNAVNSINTAAGTIKNLVGRLLSMLSNFAYKLLGLEST 379 Query 432 --EDELKVLVEGYRNWCDEV-----RDLVGHKINSDGELDSKSIVENIMKDVYEIQRIEN 484 D V E W ++ + L IN D + +S++ E+ + E Sbjct 380 FLRDASVVFSENVDGWLKQISWCQDQFLAKAYINQDELMVLRSLITR-----GEVMQRE- 433 Query 485 MYKKGLEISRNIAELKLPTKLTISFNTHMRYLTEVFKSVDTSGAFGNKPRTQPIVIWLFG 544 M G+++S + L N L ++ G G R P V++ G Sbjct 434 MIMGGMKVSPTVCGL---------INKGCTDLAKLMAGAVMHGTSGT--RKIPFVVYAHG 482 Query 545 ESGRGKSGMTWPLAIDLNNSLLDNVDEMRNFSKNIYMRNVEQEFWDNYQGQNIVCXDDFG 604 S GK+ + +N + D E+ +Y RNV ++W Y+ Q IV DDFG Sbjct 483 ASRVGKT-------MVINRLIEDFRKELELGEDCVYPRNVVDDYWSGYKRQPIVVIDDFG 535 Query 605 QMRDSSSNPNPEFMELIRTANIAPYPLHMAHLEDKRKTKFTSKVIIMTSNVFEQDVNSLT 664 + SS+P+ E +LI + APYPL+MA L +K F S +++ +SN E S Sbjct 536 AV---SSDPSAE-AQLIPLISSAPYPLNMADLSEK-GMHFDSAIVMCSSNFIECSPESKV 590 Query 665 FPD-AFRRR 672 + AFR R Sbjct 591 RDEMAFRNR 599 >RecName: Full=RNA1 polyprotein; AltName: Full=Genome polyprotein B; AltName: Full=P1; Contains: RecName: Full=Protease cofactor; Contains: RecName: Full=Putative helicase; AltName: Full=Membrane-binding protein; AltName: Full=NTP-binding protein; Short=NTB; Contains: RecName: Full=Viral genome-linked protein; AltName: Full=VPg; Contains: RecName: Full=Picornain 3C-like protease; Short=3C-like protease; Contains: RecName: Full=RNA-directed RNA polymerase [Cherry rasp leaf virus isolate potato] Sequence ID: Q6EWG9.1 Length: 2250 Range 1: 1469 to 2075 Score:158 bits(400), Expect:3e-37, Method:Compositional matrix adjust., Identities:167/642(26%), Positives:291/642(45%), Gaps:61/642(9%) Query 1279 TLNDSSKGQYILRQGLEYTMPTTNGDCGAPLVINETQVIRKIAGIHVAGDARGKAYAESI 1338 T + S G + Y T G C +PL+ E I G+HV GD YA+ + Sbjct 1469 TYSCGSLGSKQMPACYSYVFETYAGLCTSPLIAQEGGRC-IILGLHVVGDRSKMGYAQIV 1527 Query 1339 SQKDLIRAFSKIDVSMQIQLDLDQTLNFNQQQXIIPPNAE-FGPEDLDFCDLPSLKMIPV 1397 + D FS + +S D+ ++ I N+E FG S+ + Sbjct 1528 TLDD----FSDVALS-------DKVGQGPEEMYIPTKNSECFG----------SVTKLGA 1566 Query 1398 GRLSEPLFEPGKTDIRPSLVYGKIS-EIKTKPAIL--RNVIVDGKI---VNIKHKNLKKC 1451 +P F KT + PSL+ I E T+PAIL R+ + I ++ + +KK Sbjct 1567 WTGPKPYFLE-KTSLIPSLISTSIDVERTTEPAILSQRDKRLKDSINPEFDVFLEGMKKY 1625 Query 1452 AMDTPYVSKEMTEEAFQ-LVKSVWLKGMRNELKKVLTYEEAICGNDSSEFISAINRSSSP 1510 A++ + +++ E F+ + V+L+ + + LT ++ G + + I ++ Sbjct 1626 AVEAHSLDEDL--EVFEDALDRVFLEIPEHACED-LTNDQVCNGIEDDPYAEGIVMQTAE 1682 Query 1511 GFPWIRDRIKGTKGKQGWF-GAEGE-YILDEDVF--EAVKTRIQNAKNGVRTPVMWVDTL 1566 GFP+ R G GK F GA G+ +I+ + E K + ++ G+ P++ +D Sbjct 1683 GFPFCTQRPAGASGKSWLFAGAPGDWHIVPGSLLANEMHKKEVAPSR-GLFEPLIGIDFP 1741 Query 1567 KDERRPIEKVD-QLKTRVFSNGPMDFSITFRMYYLGFIAHLMENRITNEVSIGTNVYSQD 1625 KDE+ KV + KTR+F+ P+D++I R Y+L ++H+M T V +G + S + Sbjct 1742 KDEKVDSSKVYIKPKTRLFTILPVDYNILVRKYFLSSVSHIMTQHNTIPVKVGIDCLSNE 1801 Query 1626 WNKTVRKLKTMGPKVIAGDFSTFDGSLNVCIMEKFADLANEFYDDG----------SENA 1675 W+ +L++ G GD+S FDG +++ N+FY++ S N+ Sbjct 1802 WSILYHQLRSKGTNWFNGDYSRFDGITPRNVLQGIVKRINKFYNNKNSLAITDSNLSINS 1861 Query 1676 LIRHVLLMDVYNSTH-ICGDSVYMMTHSQPSGNPATTPLNCFINSMGLRMVFELCSKKYS 1734 + LL D+ ++ + + ++ +T PSG P T +N +N+ + + K+ Sbjct 1862 DLARSLLTDMASTRYGLTNGDLWYVTSGIPSGFPLTVIVNSLVNNFFIHFSYIKLMKR-E 1920 Query 1735 ALNGTKCYVMKDFSKHVSIVSYGDDNVINFSDEVSEWFNMETITEAFEKLGFTYTDELKG 1794 LN Y + F + V+ +YGDDN+++ +D ++E FN+ I + + G T + Sbjct 1921 ELNSL--YPLHSFRQMVAYATYGDDNLVSVNDVITEKFNLVKIADLLAEHGVTLKNGADK 1978 Query 1795 KNGEVPKWRTIEDVQYLKRKFRYDSKRKVWEAPLCMDTILEMPNWCRGSLDIQEGTKVNC 1854 + + +E V +LKRKF + V APL I E +W R L + T NC Sbjct 1979 NEEILSPFYPLEKVDFLKRKFVHYQGHVV--APLNPVNITERLHWIRKGLGEADATLENC 2036 Query 1855 ENAIMELSMHEEYVFDKWSKVISKAYQKATGDCLDIS--TYN 1894 +A E H +D +++K Y+ L I TYN Sbjct 2037 SSAAFEALFHGRCYYD---TLVAKIYKACAASKLSIQLPTYN 2075 >RecName: Full=RNA1 polyprotein; AltName: Full=P1; Contains: RecName: Full=Protein X1; Contains: RecName: Full=Protein X2; Contains: RecName: Full=Putative ATP-dependent helicase; AltName: Full=Membrane-binding protein; AltName: Full=NTP-binding protein; Short=NTB; Contains: RecName: Full=Viral genome-linked protein; AltName: Full=VPg; Contains: RecName: Full=Picornain 3C-like protease; Short=3C-like protease; Short=PRO; Contains: RecName: Full=RNA-directed RNA polymerase; Short=POL [Tomato ringspot virus (isolate raspberry)] Sequence ID: P29150.2 Length: 2197 Range 1: 1601 to 1978 Score:152 bits(384), Expect:2e-35, Method:Compositional matrix adjust., Identities:108/392(28%), Positives:190/392(48%), Gaps:25/392(6%) Query 1484 KVLTYEEAICGNDSSEFISAINRSSSPGFPWIRDRIKGTKGKQ----------GWFGAEG 1533 ++++ +E I G+D I A+ + +S G+P++ R G KGK G + Sbjct 1601 RIMSDDEVINGSDFGFNIEAVVKGTSEGYPFVLSRRPGEKGKARFLEELEPQPGDTKPKY 1660 Query 1534 EYILDEDVFEAVKTRIQNAKNGVRTPVMWVDTLKDER-RPIEKVDQLKTRVFSNGPMDFS 1592 + ++ +V A+ Q A+ V ++ +D KDER +P + +++ KTR F PM ++ Sbjct 1661 KLVVGTEVHSAMVAMEQQARTEVPL-LIGMDVPKDERLKPSKVLEKPKTRTFVVLPMHYN 1719 Query 1593 ITFRMYYLGFIAHLMENRITNEVSIGTNVYSQDWNKTVRKLKTMGPKVIAGDFSTFDGSL 1652 + R Y + + NR ++GTN YS+DW ++L + D+S FDG L Sbjct 1720 LLLRKYVGILCSSMQVNRHRLACAVGTNPYSRDWTDIYQRLAEKNSVALNCDYSRFDGLL 1779 Query 1653 NVCIMEKFADLANEFYDDGSENALIRHVLLMDVYNSTHICGDSVYMMTHSQPSGNPATTP 1712 N + N+ Y+D E++++R LLM +Y +CG V+ + PSG T Sbjct 1780 NYQAYVHIVNFINKLYND--EHSIVRGNLLMAMYGRWSVCGQRVFEVRAGMPSGCALTVI 1837 Query 1713 LNCFINSMGLRMVFELCSKKYSALNGTKCYVMKDFSKHVSIVSYGDDNVINFSDEVSEWF 1772 +N N M +R V+ + + ++ +F + V ++ YGDDN+I+ + ++F Sbjct 1838 INSLFNEMLIRYVYRITVPR---------PLVNNFKQEVCLIVYGDDNLISIKPDTMKYF 1888 Query 1773 NMETITEAFEKLGFTYTDELKGKNGEVPKWRTIEDVQYLKRKFRYDSKRKVWEAPLCMDT 1832 N E I K T TD KN V + + ++ + +LKR FR +S +V APL + Sbjct 1889 NGEQIKTILAKYKVTITDG-SDKNSPVLRAKPLKQLDFLKRGFRVESDGRVL-APLDLQA 1946 Query 1833 ILEMPNWCRGSLDIQEGTKVNCENAIMELSMH 1864 I + +I + +N + A+ EL +H Sbjct 1947 IYSSLYYINPQGNILKSLFLNAQVALRELYLH 1978 >RecName: Full=RNA1 polyprotein; AltName: Full=B RNA polyprotein; AltName: Full=Bottom component polyprotein; AltName: Full=Genome polyprotein B; AltName: Full=P1; Contains: RecName: Full=Protease cofactor; AltName: Full=32 kDa protein; Contains: RecName: Full=Putative helicase; AltName: Full=58 kDa protein; AltName: Full=Membrane-binding protein; AltName: Full=NTP-binding protein; Short=NTB; Contains: RecName: Full=Viral genome-linked protein; AltName: Full=VPg; Contains: RecName: Full=Picornain 3C-like protease; Short=3C-like protease; AltName: Full=24 kDa protein; Contains: RecName: Full=RNA-directed RNA polymerase; AltName: Full=87 kDa protein [Cowpea mosaic virus strain SB] Sequence ID: P03600.1 Length: 1866 Range 1: 1274 to 1612 Score:151 bits(381), Expect:4e-35, Method:Compositional matrix adjust., Identities:105/354(30%), Positives:181/354(51%), Gaps:27/354(7%) Query 1486 LTYEEAICGNDSSEFISAINRSSSPGFPWIRDRIKGTKGKQGWFGAE--------GEYIL 1537 ++ EEA+ G + E++ I ++S GFP I R KGK+ + + G + Sbjct 1274 VSLEEALNGCEGVEYMERIPLATSEGFPHILSRNGKEKGKRRFVQGDDCVVSLIPGTTVA 1333 Query 1538 DE-DVFEAVKTRIQNAKNGVRTPVMWVDTLKDERRPIEKV-DQLKTRVFSNGPMDFSITF 1595 + EA R A G+ P KDE+ P+ KV D+ KTR F+ PM++++ Sbjct 1334 KAYEELEASAHRFVPALVGIECP-------KDEKLPMRKVFDKPKTRCFTILPMEYNLVV 1386 Query 1596 RMYYLGFIAHLMENRITNEVSIGTNVYSQDWNKTVRKLKTMGPKVIAGDFSTFDGSLNVC 1655 R +L F+ +M NR +G N YS +W++ ++K G V+ D+S+FDG L+ Sbjct 1387 RRKFLNFVRFIMANRHRLSCQVGINPYSMEWSRLAARMKEKGNDVLCCDYSSFDGLLSKQ 1446 Query 1656 IMEKFADLANEFYDDGSENAL--IRHVLLMDVYNSTHICGDSVYMMTHSQPSGNPATTPL 1713 +M+ A + NE G E+ L R LLM + IC ++V+ + PSG P T + Sbjct 1447 VMDVIASMINELC--GGEDQLKNARRNLLMACCSRLAICKNTVWRVECGIPSGFPMTVIV 1504 Query 1714 NCFINSMGLRMVFELCSKKYSALNGTKCYVMKDFSKHVSIVSYGDDNVINFSDEVSEWFN 1773 N N + +R ++ ++ A +++ F K + +V+YGDDN+I+ + V+ +F+ Sbjct 1505 NSIFNEILIRYHYKKLMREQQAPE----LMVQSFDKLIGLVTYGDDNLISVNAVVTPYFD 1560 Query 1774 METITEAFEKLGFTYTDELKGKNGEVPKWRTIEDVQYLKRKFRYDSKRKVWEAP 1827 + + ++ + G T TD + E+P +R +E+ +LKR F S +W+AP Sbjct 1561 GKKLKQSLAQGGVTITDGKDKTSLELP-FRRLEECDFLKRTFVQRSS-TIWDAP 1612 Range 2: 468 to 620 Score:57.4 bits(137), Expect:1e-06, Method:Compositional matrix adjust., Identities:47/167(28%), Positives:76/167(45%), Gaps:15/167(8%) Query 516 LTEVFKSVDTSGAFGNKPRTQPIVIWLFGESGRGKSGMTWPLAIDLNNSLLDNVDEMRNF 575 L ++ +S G G R P I+ G+S GKS + + D D Sbjct 468 LEQLNRSCSVQGVRG--VRKMPFTIFFQGKSRTGKSLLMSQVTKDFQ-------DHYGLG 518 Query 576 SKNIYMRNVEQEFWDNYQGQNIVCXDDFGQMRDSSSNPNPEFMELIRTANIAPYPLHMAH 635 + +Y RN ++W Y+ Q V DDF + + P+ E ++I + APYPL+MA Sbjct 519 GETVYSRNPCDQYWSGYRRQPFVLMDDFAAV---VTEPSAE-AQMINLISSAPYPLNMAG 574 Query 636 LEDKRKTKFTSKVIIMTSNVFEQDVNSLTFPD-AFRRRVDLCAEVKN 681 LE+K F S+ + +++N E + D AF+ R + +V N Sbjct 575 LEEK-GICFDSQFVFVSTNFLEVSPEAKVRDDEAFKNRRHVIVQVSN 620 >RecName: Full=RNA1 polyprotein; AltName: Full=Genome polyprotein B; AltName: Full=P1; Contains: RecName: Full=Protease cofactor; AltName: Full=32 kDa protein; Contains: RecName: Full=Putative helicase; AltName: Full=58 kDa protein; AltName: Full=Membrane-binding protein; AltName: Full=NTP-binding protein; Short=NTB; Contains: RecName: Full=Viral genome-linked protein; AltName: Full=VPg; Contains: RecName: Full=Picornain 3C-like protease; Short=3C-like protease; AltName: Full=24 kDa protein; Contains: RecName: Full=RNA-directed RNA polymerase; AltName: Full=87 kDa protein [Bean-pod mottle virus (strain Kentucky G7)] Sequence ID: Q9YJU5.1 Length: 1850 Range 1: 1033 to 1635 Score:149 bits(375), Expect:2e-34, Method:Compositional matrix adjust., Identities:159/650(24%), Positives:282/650(43%), Gaps:78/650(12%) Query 1246 EVTLPVLRYSDKMNRFLATLIEC--DKV--EAYDRPYTLN--------DSSKGQYILRQ- 1292 E TLP N F A L+ C D V + Y R +N ++G Y+ +Q Sbjct 1033 EKTLP--------NNFSAELLSCKLDTVTGQYYPRMAPINCRVHRQPIHITEGNYVRKQD 1084 Query 1293 -GLEYTMPTTNGDCGAPLVINETQVIRKIAGIHVAGDARGKAYAESISQKDLIRAFSKID 1351 +EY T DCG+ LV+ + ++I G HVAG YA I + + + Sbjct 1085 VSIEYDACTIPNDCGS-LVVAKVGNHKQIVGFHVAGSKGRLGYASLIPYVEPVVQAQSAE 1143 Query 1352 VSMQIQLDLDQTLNFNQQQXIIPPNAEFGPEDLDFCDLPSLKMIPVGRLSEPLFEP--GK 1409 V +F P ++D + +G L ++ P K Sbjct 1144 VYF-----------------------DFFPVEVD----SQEGVAHIGELKSGVYVPLPTK 1176 Query 1410 TDIRPSLVYGKISEIKTK-PAILRNVIVDGKIVNIKHKNLKKCAMDTPYVSKEMT--EEA 1466 T++ + ++ K P++L D ++V +H+++ + Y + M EE Sbjct 1177 TNLVETPKEWQLDLPCDKIPSVL--TTTDERLVGTEHEDMTHSWWYSKYATPMMPLDEEI 1234 Query 1467 FQLVKSVWLKGMRNELKKVLTYEE-----AICGNDSSEFISAINRSSSPGFPWIRDRIKG 1521 V ++ + + + T+EE A+ G + +++ I ++S GFP + R G Sbjct 1235 LSKVAQDMVEEWFDCVDEEDTFEEVSLSAALNGVEGLDYMERIPLATSEGFPHVLSRKNG 1294 Query 1522 TKGKQGWFGAEGE---YILDEDVFEAVKTRIQNAKNGVRTPVMWVDTLKDERRPIEKV-D 1577 KGK+ + +GE I V EA + V T ++ ++ KDE+ P K+ D Sbjct 1295 EKGKRRFVTGDGEEMSLIPGTSVEEAYNKLTVELEKCVPT-LVGIECPKDEKLPRRKIFD 1353 Query 1578 QLKTRVFSNGPMDFSITFRMYYLGFIAHLMENRITNEVSIGTNVYSQDWNKTVRKLKTMG 1637 + KTR F+ PM+F++ R +L F+ +M+ R +G N YS +W +L + G Sbjct 1354 KPKTRCFTILPMEFNLVVRQKFLNFVRFIMKKRDKLSCQVGINPYSMEWTGLANRLLSKG 1413 Query 1638 PKVIAGDFSTFDGSLNVCIMEKFADLANEFYDDGSENALIRHV--LLMDVYNSTHICGDS 1695 ++ D+++F G + +M K A++ N G + L+R LL+ + IC Sbjct 1414 NDILCCDYASFSGLITKQVMSKMAEMINSLC--GGDEKLMRERTHLLLACCSRMAICKKD 1471 Query 1696 VYMMTHSQPSGNPATTPLNCFINSMGLRMVFELCSKKYSALNGTKCYVMKDFSKHVSIVS 1755 ++ + PSG P T N N M +R +E ++ A + ++ F +S+ Sbjct 1472 IWRVECGIPSGFPLTVICNSIFNEMLIRYSYEKLLRQAKAPS----MFLQSFRNFISLCV 1527 Query 1756 YGDDNVINFSDEVSEWFNMETITEAFEKLGFTYTDELKGKNGEVPKWRTIEDVQYLKRKF 1815 YGDDN+I+ + V +F+ + T TD + K ++R + + +LKR F Sbjct 1528 YGDDNLISVHEYVKPYFSGSKLKSFLASHNITITDGID-KTSATLQFRKLSECDFLKRNF 1586 Query 1816 RYDSKRKVWEAPLCMDTILEMPNWCR-GSLDIQEGTKVNCENAIMELSMH 1864 + S +W AP ++ ++ +L++QE VN N + EL +H Sbjct 1587 KQMSN-VLWVAPEDKASLWSQLHYVSCNNLEMQEAYLVNLVNVLRELYLH 1635 Range 2: 465 to 614 Score:66.2 bits(160), Expect:3e-09, Method:Compositional matrix adjust., Identities:54/162(33%), Positives:80/162(49%), Gaps:20/162(12%) Query 534 RTQPIVIWLFGESGRGKSGMTWPLAIDLNNSLLDNVDEMRNFSKNIYMRNVEQEFWDNYQ 593 R P VI+ GES GKS + ++ + D D + +Y RN FW Y+ Sbjct 465 RKIPFVIFAHGESRVGKSLL-------VDRLITDFCDHLEIGEDAVYSRNPSDPFWSGYR 517 Query 594 GQNIVCXDDFGQMRDSSSNPNPEFMELIRTANIAPYPLHMAHLEDKRKTKFTSKVIIMTS 653 Q IV DDF + S P+ E +LI + APYP++MA LE+K F S++++ +S Sbjct 518 RQPIVTIDDFAAV---VSEPSAE-AQLIPLVSSAPYPINMAGLEEK-GMHFDSQIMMCSS 572 Query 654 NVFEQDVNSLTFPD-AF--RRRVDLCAEVK-----NKDEFTK 687 N E + D AF RR V + E+K ++ +FTK Sbjct 573 NFLEPSPEAKIRDDMAFRNRRHVLITVELKPGVEYDESDFTK 614 >RecName: Full=RNA1 polyprotein; AltName: Full=P1; Contains: RecName: Full=Protein X1; Contains: RecName: Full=Protein X2; Contains: RecName: Full=Putative ATP-dependent helicase; AltName: Full=Membrane-binding protein; AltName: Full=NTP-binding protein; Short=NTB; Contains: RecName: Full=Viral genome-linked protein; AltName: Full=VPg; Contains: RecName: Full=Picornain 3C-like protease; Short=3C-like protease; Short=PRO; Contains: RecName: Full=RNA-directed RNA polymerase; Short=POL [Blackcurrant reversion virus] Sequence ID: Q8V5E0.1 Length: 2094 Range 1: 1502 to 1887 Score:142 bits(359), Expect:1e-32, Method:Compositional matrix adjust., Identities:115/409(28%), Positives:192/409(46%), Gaps:37/409(9%) Query 1489 EEAICGNDSSEFISAINRSSSPGFPWIRDRIKGTKGKQGWFGAEGEYILDEDVFEAVKTR 1548 E AI G+ ++ N SS G+P++ R G GK +F + D + +K+ Sbjct 1502 EIAINGSTEMDY-EPFNLQSSEGYPYVTQRKPGESGKIRFF--------EMDPYTGLKSL 1552 Query 1549 IQNAKNGVR-----------TPVM-WVDTLKDERRPIEKVD-QLKTRVFSNGPMDFSITF 1595 I N +R P M ++T KDE P+ K+ + KTR+FS P++F++ Sbjct 1553 IPNTLPAMRYEALQRDCFTSVPEMVCIETPKDECLPLRKICIKPKTRLFSILPLEFNLLL 1612 Query 1596 RMYYLGFIAHLMENRITNEVSIGTNVYSQDWNKTVRKLKTMGPKVIAGDFSTFDGSLNVC 1655 R +L F + L +R T +G N YS++W + +++L+ I D+++FDG L Sbjct 1613 RKKFLHFSSSLQMHRDTLPTQVGVNPYSREWGELLQRLRAQSSVAINCDYASFDGLLTGQ 1672 Query 1656 IMEKFADLANEFYDDGSENALIRHVLLMDVYNSTHICGDSVYMMTHSQPSGNPATTPLNC 1715 I+EK + N+ Y + + R LLM + N ICG VY + PSG T LN Sbjct 1673 ILEKIGTMINKMYIGSEASKIQRLNLLMSIVNRKSICGARVYEVRAGIPSGCALTVLLNS 1732 Query 1716 FINSMGLRMVFELCSKKYSALNGTKCYVMKDFSKHVSIVSYGDDNVINFSDEVSEWFNME 1775 N +R V+ + + G + FS++V+++ YGDDN+I + FN E Sbjct 1733 IFNEFLIRFVWR------TTIIGVP---RERFSQYVTLLIYGDDNLIAVHPDYLPHFNGE 1783 Query 1776 TITEAFEKLGFTYTDELKGKNGEVPKWRTIEDVQYLKRKFRYDSKRKVWEAPLCMDTIL- 1834 I + TD K E + + + + +LKR+FR + V+ APL + ++ Sbjct 1784 IIRTRLADVNVIITDG-SDKTAEKIEEKPLVQLDFLKRRFRKLNDGTVY-APLDLASVYT 1841 Query 1835 EMPNWCRGSLDIQEGTKVNCENAIMELSMHEEYVFDKWSKVISKAYQKA 1883 + N G+ I + N NA++EL +H + W + Y+K+ Sbjct 1842 SLQNVTMGAGSIHIALQNNVHNALLELYLHGN---ETWFNHLRDFYRKS 1887 Range 2: 627 to 853 Score:58.9 bits(141), Expect:5e-07, Method:Compositional matrix adjust., Identities:61/240(25%), Positives:109/240(45%), Gaps:19/240(7%) Query 473 MKDVYEIQRIENMYKKGLEISRNIAELKLPTKLTIS--FNTHMRYLTEVFKSVDTSGAFG 530 + D+ + + ++ KG + +A+ T L + +T + LT++ + +G+F Sbjct 627 VTDIVLLDTVTHLLYKGQILQLTLAKASRTTSLDYARIVSTLIGELTKIRATCARAGSFD 686 Query 531 NKPRTQPIVIWLFGESGRGKSGMTWPLAIDLNNSLLDNVDEMRNFSKNIYMRNVEQEFWD 590 + R +P +++G+S GKS D++ +LL N +IY +N FW Sbjct 687 GR-RPEPFWCYIYGKSHCGKS----LFMEDVSRALLKENGHAPN---DIYAKNARDSFWS 738 Query 591 NYQGQNIVCXDDFGQMRDSSSNPNPEFMELIRTANIAPYPLHMAHLEDKRKTKFTSKVII 650 Y V DD S + EF++L+ + Y L+MA +EDK F S +I+ Sbjct 739 GYLQHACVQVDDLSACVTRPSLES-EFLQLVGSKM---YSLNMAAVEDK-GMSFNSSIIV 793 Query 651 MTSNVFEQDVNS-LTFPDAF--RRRVDLCAEVKNKDEFTKMCWSKSA-GKMVQRLDKGKV 706 T+NV+ ++ +T DA+ RR V + EF S S ++V R D+ + Sbjct 794 TTANVYTAPTSAEITDKDAYGNRRNVVVQCRAAPDVEFDPRNPSASCEARLVHRTDESPL 853 >RecName: Full=RNA1 polyprotein; AltName: Full=P1; Contains: RecName: Full=P1A protein; Short=1A; AltName: Full=Protease cofactor; Contains: RecName: Full=Putative ATP-dependent helicase; AltName: Full=1B; AltName: Full=Membrane-binding protein; AltName: Full=NTP-binding protein; Short=NTB; Contains: RecName: Full=Viral genome-linked protein; AltName: Full=1C-VPg; Contains: RecName: Full=Picornain 3C-like protease; Short=3C-like protease; AltName: Full=1D-PRO; Contains: RecName: Full=RNA-directed RNA polymerase; AltName: Full=1E-POL [Cycas necrotic stunt virus] Sequence ID: Q8QVV0.1 Length: 2336 Range 1: 1623 to 1964 Score:137 bits(345), Expect:7e-31, Method:Compositional matrix adjust., Identities:100/357(28%), Positives:170/357(47%), Gaps:27/357(7%) Query 1495 NDSSEF---ISAINRSSSPGFPWIRDRIKGTKGKQGWF--GAEGEYILDEDVFEA--VKT 1547 +D EF + + +SPG+P++ + G KGK+ +F +G L E A + Sbjct 1623 DDDDEFEDAVECLKMRTSPGYPYVLHKEPGMKGKEAYFELAPDGTRALKEGSLAAELYEN 1682 Query 1548 RIQNAKNGVRTPVMWVDTLKDERRPIEKVDQLKTRVFSNGPMDFSITFRMYYLGFIAHLM 1607 +Q +K+ + V+ ++ KDE EKV++ R F P+ +++ R L F Sbjct 1683 IVQYSKSAIPELVV-IECPKDELLKTEKVNK-ACRPFEIMPLHYNLFLREKTLAFSLFQQ 1740 Query 1608 ENRITNEVSIGTNVYSQDWNKTVRKLKTMGPKVIAGDFSTFDGSLNVCIMEKFADLANEF 1667 NR +GT YS DW ++L + I D+S+FDG LN ++ A++ N Sbjct 1741 RNRHKLACQVGTKAYSHDWTHMYQRLVAKSDRAINCDYSSFDGLLNSQVVSCIANMINSM 1800 Query 1668 YDDGSENALI---RHVLLMDVYNSTHICGDSVYMMTHSQPSGNPATTPLNCFINSMGLRM 1724 Y E + R+ ++ ++ I G V + PSG T +N N + +R Sbjct 1801 YHSPEETVVSKRQRYNMINALFGRLAITGQEVMRVRAGLPSGFALTVVINSVFNEILMRY 1860 Query 1725 VFELCSKKYSALNGTKCYVMKDFSKHVSIVSYGDDNVINFSDEVSEWFNMETITEAFEKL 1784 F K L + FS +V+++ YGDDN+++ +D+++ +FN ETI E +K Sbjct 1861 CF-----KVLVLGPQR----NSFSTYVTLLVYGDDNLMSCTDKIAIYFNGETIKETLKKK 1911 Query 1785 GFTYTDELKGKNGEVP--KWRTIEDVQYLKRKFRYDSKRKVWEAPLCMDTILEMPNW 1839 T TD G + P KW+T+ ++ +LKR+F + V +APL + I +W Sbjct 1912 NVTITD---GSDKTAPDIKWKTLGELDFLKRRF-LKLETGVVQAPLDLTAIFSCLHW 1964 >RecName: Full=RNA1 polyprotein; AltName: Full=P1; Contains: RecName: Full=P1A protein; Short=1A; AltName: Full=Protease cofactor; Contains: RecName: Full=Putative ATP-dependent helicase; AltName: Full=1B; AltName: Full=Membrane-binding protein; AltName: Full=NTP-binding protein; Short=NTB; Contains: RecName: Full=Viral genome-linked protein; AltName: Full=1C-VPg; Contains: RecName: Full=Picornain 3C-like protease; Short=3C-like protease; AltName: Full=1D-PRO; Contains: RecName: Full=RNA-directed RNA polymerase; AltName: Full=1E-POL [Grapevine fanleaf virus] Sequence ID: P29149.1 Length: 2284 Range 1: 1390 to 1948 Score:136 bits(342), Expect:1e-30, Method:Compositional matrix adjust., Identities:153/611(25%), Positives:256/611(41%), Gaps:71/611(11%) Query 1278 YTLNDSSKG---QYILRQGLEYTMPTTNGDCGAPLVINETQVIRKIAGIHVAGDARGKAY 1334 +TL D G Q +R+ + Y DCGA L + Q I K+ + V+G+ RG Y Sbjct 1390 HTLKDEGGGNVYQNKIRRYIVYAHEAKKYDCGA-LAVAVIQGIPKVIAMLVSGN-RGVTY 1447 Query 1335 AESISQKDLIRAFSKIDVSMQIQLDLDQTLNFNQQQXIIPPNAEFGPEDLDFCDLPSLKM 1394 + I + +F + +V + D + + + + +A P F +P Sbjct 1448 SSVIP--NYSSSFIRGEVPY-VPEDGLVSRGYRKVGYLHASDAPHVPSKTSFMKVPD--- 1501 Query 1395 IPVGRLSEPLFEPGKTDIRPSLVYGKISEIKTKPAILRNVIVDGKIVNIKHKNLKKCAMD 1454 L P +P + I + + L+ I +G +KK A Sbjct 1502 ----ELCFPYPDPKQPAI-----------LSAEDERLKGTIHEG--YTPLRDGMKKFAEP 1544 Query 1455 TPYVSKEMTEEAFQLVKSVWLKGMRNELKKVLTYEEAICGNDSSEFISAINRSSSPGFPW 1514 + +++ +E + W E + ++ ++AI G+ E+ + +S G+P Sbjct 1545 MYLLEEKLLDEVAGDMVQTWYD--PGEFLEDISLDQAINGDMDEEYFDPLVMDTSEGYPD 1602 Query 1515 IRDRIKGTKGKQGWFGAE--------------GEYILDEDVFEAVKTRIQNAKNGVRTPV 1560 + DR G KGK +F E Y L+ED KT+I + + Sbjct 1603 VLDRKPGEKGKARFFVGEPGNRAFVAGCNPEKAYYQLEEDS----KTKIPS--------L 1650 Query 1561 MWVDTLKDERRPIEKVDQLKTRVFSNGPMDFSITFRMYYLGFIAHLMENRITNEVSIGTN 1620 + ++T KDER K+D TR+FS P+ +++ R+ +L F LM+ R +G N Sbjct 1651 VSIETPKDERLKRSKIDTPGTRLFSVLPLAYNLLLRVKFLSFSRLLMKKRGHLPCQVGIN 1710 Query 1621 VYSQDWNKTVRKLKTMGPKVIAGDFSTFDGSLNVCIMEKFADLANEFYDDGSENALIRHV 1680 YS++W +L + D+ FDG + I+ AD+ N Y D N R Sbjct 1711 PYSREWTDLYHRLGELSDVGYNCDYKAFDGLITEQILSTIADMINAGYRDPVGNRQ-RKN 1769 Query 1681 LLMDVYNSTHICGDSVYMMTHSQPSGNPATTPLNCFINSMGLRMVFELCSKKYSALNGTK 1740 LL+ + ICG+ VY PSG T LN + +R C KK + Sbjct 1770 LLLAICGRLSICGNQVYATEAGIPSGCALTVVLNSIFKELLMRY----CFKKIVPPVYKE 1825 Query 1741 CYVMKDFSKHVSIVSYGDDNVINFSDEVSEWFNMETITEAFEKLGFTYTDELKGKNGEVP 1800 C F + V +++YGDDNV + V ++F + + KLG T TD +P Sbjct 1826 C-----FDRCVVLITYGDDNVFTVAQSVMQYFTGDALKMQMAKLGVTITDGKDKSLSTIP 1880 Query 1801 KWRTIEDVQYLKRKFRYDSKRKVWEAPLCMDTILEMPNWCR--GSLDIQEGTKVNCENAI 1858 R + ++++LKR F S + APL +I+ + R GS D+ + N A+ Sbjct 1881 A-RPLLELEFLKRGFVRSSGGMI-NAPLEKLSIMSSLVYIRSDGS-DMLQKLLDNVNTAL 1937 Query 1859 MELSMHEEYVF 1869 +EL +H + + Sbjct 1938 VELYLHGDRTY 1948 >RecName: Full=RNA1 polyprotein; AltName: Full=P1; Contains: RecName: Full=Putative helicase; AltName: Full=Putative NTP-binding protein; Contains: RecName: Full=Probable picornain 3C-like protease; Short=3C-like protease; Contains: RecName: Full=Probable RNA-directed RNA polymerase [Satsuma dwarf virus S-58] Sequence ID: Q9WAL8.1 Length: 2081 Range 1: 1342 to 1919 Score:128 bits(322), Expect:4e-28, Method:Compositional matrix adjust., Identities:150/606(25%), Positives:244/606(40%), Gaps:49/606(8%) Query 1299 PTTNGDCGAPLVINETQVIRKIAGIHVAGDARGKAYAESISQKDLIRAFSKIDVSMQIQL 1358 P NG CG L N R I AG+ + +A D+ F + D Sbjct 1342 PALNGHCGRLLCANLAGHWRVIG--MCAGEGKNRAGVTKALYADIPHEFLRAD------- 1392 Query 1359 DLDQTLNFNQQQXIIPPNAEFGPEDLDFCDLP----SLKMIP--------VGRLSEPLFE 1406 N N Q AE LD +P ++ P VG+ L Sbjct 1393 ------NLNAVQR----GAELDAAILDRFSIPISECRKELTPMTTRLGYVVGQYPRAL-- 1440 Query 1407 PGKTDIRPSLVYGKI-SEIKTKPAILRNVIVDGKIVNIKHKNL-KKCAMDTPYVSKEMTE 1464 KT I PS+++ + + +T+P IL + + + +K + + + Sbjct 1441 -RKTSIVPSIIHDNLWRKPETEPTILGKIDDRSPFPYDPYATIGEKFVQEVGPIDLSVGS 1499 Query 1465 EAFQLVKSV---WLKGMRNELKKVLTYEEAICGNDSSEFISAINRSSSPGFPWIRDRIKG 1521 +A +V ++ W + + VLT+E AI G+ + + + S+S G+P R G Sbjct 1500 DASLVVANIGSSWKAVGKPQCPTVLTWEVAINGDAAIPYCERLPLSTSEGYPDSIQRNFG 1559 Query 1522 TKGKQGWFGAEGEYI---LDEDVFEAVKTRIQNAKNGVRTPVMWVDTLKDERRPIEKVD- 1577 KGK+ +F +GE + + E + K V + KDE+ +KV Sbjct 1560 EKGKKRFFDLKGENVRVPTPALMEELEVLERELQKEEVCLTCINTACAKDEKTAPKKVRV 1619 Query 1578 QLKTRVFSNGPMDFSITFRMYYLGFIAHLMENRITNEVSIGTNVYSQDWNKTVRKLKTMG 1637 Q KTR+F P +I R Y + ++ LM +G NVYS+ W++ + + + Sbjct 1620 QPKTRIFEILPFQINIIIRRYLMFWMQLLMVAHDELPSKVGINVYSESWDRLLGRHTRLA 1679 Query 1638 PKVIAGDFSTFDGSLNVCIMEKFADLANEFYDDGSENALIRHVLLMDVYNSTHICGDSVY 1697 GD+S FD S ++ D NE DDG N R ++ V N I +Y Sbjct 1680 NH-FTGDYSGFDTSTPRVLVYAIIDKINELADDGEVNQRTRRNIIRFVLNRYLISDGVLY 1738 Query 1698 MMTHSQPSGNPATTPLNCFINSMGLRMVFELCSKKYSALNGTKCYVMKDFSKHVSIVSYG 1757 + PSG T +N +N L+ + K+ N Y F + I YG Sbjct 1739 EIHGGTPSGFAPTVMINSVVNEFYLKWSWIGLLKEAGYANQATLYA---FHEATEISLYG 1795 Query 1758 DDNVINFSDEVSEWFNMETITEAFEKLGFTYTDELKGKNGEVPKWRTIEDVQYLKRKFRY 1817 DDN ++ + V+ +N+ TI+ ++G D K G + + +E+V +LKR+F Sbjct 1796 DDNFVSVATPVASVYNLTTISNFLGRIGVKLGD--GAKTGTIKPFIPLEEVDFLKRQFVA 1853 Query 1818 DSKRKVWEAPLCMDTILEMPNWCRGSLDIQEGTKVNCENAIMELSMHEEYVFDKWSKVIS 1877 DS PL +I E + RG D ++N A+ E H + F I Sbjct 1854 DSGSTAILCPLKKISIEERLFYVRGGQDEIAALELNIATALCEAFFHGKEYFSFLEGKII 1913 Query 1878 KAYQKA 1883 +A +K+ Sbjct 1914 EAMRKS 1919 Range 2: 734 to 907 Score:50.8 bits(120), Expect:2e-04, Method:Compositional matrix adjust., Identities:54/183(30%), Positives:78/183(42%), Gaps:23/183(12%) Query 537 PIVIWLFGESGRGKSGMTWPLAIDLNNSLLDNVDEMRNFSKNIYMRNVEQEFWDNYQGQN 596 P V++ G+SG GKS +LD + + + Y RN ++FW Y Sbjct 734 PFVLFFAGDSGVGKSTAM----KKFREEVLDKLGYPK--TARFYPRNPGEKFWSGYLRHT 787 Query 597 IVCXDDFGQMRDSSSNPNPEFMELIRTANIAPYPLHMAHLEDKRKTKFTSKVIIMTSNVF 656 V DDF Q+ + + ELIR A + MA E+K +T F SK + +N + Sbjct 788 AVIYDDFAQI--PQGDMTYDEAELIRIVTNAVVTVPMAIAEEKGRT-FRSKFVFACTNRY 844 Query 657 -EQDVNSLTFPDAFRRRVDLCAEVKNKD------------EFTKMCWSKSAGKMVQRL-D 702 E + L AFRRR L V K EF++M S G+ +L D Sbjct 845 CESEDAPLADEMAFRRRRHLYIHVARKPGVEPGPRGVDNLEFSEMDNRDSNGEPAYQLND 904 Query 703 KGK 705 +GK Sbjct 905 QGK 907 >RecName: Full=RNA1 polyprotein; AltName: Full=P1; Contains: RecName: Full=P1A protein; Short=1A; AltName: Full=Protease cofactor; Contains: RecName: Full=Putative ATP-dependent helicase; AltName: Full=1B; AltName: Full=Membrane-binding protein; AltName: Full=NTP-binding protein; Short=NTB; Contains: RecName: Full=Viral genome-linked protein; AltName: Full=1C-VPg; Contains: RecName: Full=Picornain 3C-like protease; Short=3C-like protease; AltName: Full=1D-PRO; Contains: RecName: Full=RNA-directed RNA polymerase; AltName: Full=1E-POL [Arabis mosaic virus strain NW] Sequence ID: Q6W8W5.1 Length: 2284 Range 1: 1578 to 1944 Score:123 bits(309), Expect:1e-26, Method:Compositional matrix adjust., Identities:108/391(28%), Positives:172/391(43%), Gaps:39/391(9%) Query 1491 AICGNDSSEFISAINRSSSPGFPWIRDRIKGTKGKQGWF-------------GAEGEYIL 1537 AI G+ E+ I +S G+P + R G KGK +F G E Y+ Sbjct 1578 AINGDVEEEYFDPIAMDTSEGYPEVLQRKNGEKGKARFFVGEPGAREFVPGCGPERAYLS 1637 Query 1538 DEDVFEAVKTRIQNAKNGVRTPVMWVDTLKDERRPIEKVDQLKTRVFSNGPMDFSITFRM 1597 E E KTRI + ++ ++T KDER K++ TR+FS P+ +++ R+ Sbjct 1638 LE---EECKTRIPS--------LVSIETPKDERLKRSKIETPGTRLFSVLPLAYNLLLRV 1686 Query 1598 YYLGFIAHLMENRITNEVSIGTNVYSQDWNKTVRKLKTMGPKVIAGDFSTFDGSLNVCIM 1657 +L F LM+ R +G N YS++W +L D+ FDG + I+ Sbjct 1687 KFLSFSRLLMKKRSHLPCQVGINPYSREWTDLYHRLAEKSDVGYNCDYKGFDGLITEQIL 1746 Query 1658 EKFADLANEFYDDGSENALIRHVLLMDVYNSTHICGDSVYMMTHSQPSGNPATTPLNCFI 1717 A + N + + N R LLM + ICG VY PSG T +N Sbjct 1747 AVVATMINAGFRNPVSNQQ-RSNLLMAISGRLSICGSQVYETEAGIPSGCALTVVINSIF 1805 Query 1718 NSMGLRMVFELCSKKYSALNGTKCYVMKDFSKHVSIVSYGDDNVINFSDEVSEWFNMETI 1777 N + +R C KK +C F + V +++YGDDNV S + F + + Sbjct 1806 NELLMRY----CYKKIVPPIYREC-----FDRCVVLITYGDDNVFTVSQSIMTSFTGDAL 1856 Query 1778 TEAFEKLGFTYTDELKGKNGEVPKWRTIEDVQYLKRKFRYDSKRKVWEAPLCMDTILEMP 1837 LG T TD +P R + ++++LKR F+ + ++ APL +I+ Sbjct 1857 KAEMANLGVTITDGKDKSLATIPA-RPLLELEFLKRGFKKGNGGLIY-APLEKLSIMSSL 1914 Query 1838 NWCR--GSLDIQEGTKVNCENAIMELSMHEE 1866 + R GS D+ + N A++EL +H++ Sbjct 1915 VYIRSDGS-DMLQKLVDNVNTALVELYLHQD 1944 >RecName: Full=Genome polyprotein; Contains: RecName: Full=Capsid protein VP0; AltName: Full=VP4-VP2; Contains: RecName: Full=Capsid protein VP4; AltName: Full=P1A; AltName: Full=Virion protein 4; Contains: RecName: Full=Capsid protein VP2; AltName: Full=P1B; AltName: Full=Virion protein 2; Contains: RecName: Full=Capsid protein VP3; AltName: Full=P1C; AltName: Full=Virion protein 3; Contains: RecName: Full=Protein VP1-2A; AltName: Full=VPX; Contains: RecName: Full=Capsid protein VP1; AltName: Full=P1D; AltName: Full=Virion protein 1; Contains: RecName: Full=Assembly signal 2A; AltName: Full=pX; Contains: RecName: Full=Protein 2BC; Contains: RecName: Full=Protein 2B; Short=P2B; Contains: RecName: Full=Protein 2C; Short=P2C; Contains: RecName: Full=Protein 3ABCD; Short=P3; Contains: RecName: Full=Protein 3ABC; Contains: RecName: Full=Protein 3AB; Contains: RecName: Full=Protein 3A; Short=P3A; Contains: RecName: Full=Viral protein genome-linked; Short=VPg; AltName: Full=Protein 3B; Short=P3B; Contains: RecName: Full=Protein 3CD; Contains: RecName: Full=Protease 3C; Short=P3C; AltName: Full=Picornain 3C; Contains: RecName: Full=RNA-directed RNA polymerase 3D-POL; Short=P3D-POL [Human hepatitis A virus Hu/Japan/HAJ85-1/1985] Sequence ID: A5LGW7.1 Length: 2228 Range 1: 1829 to 2183 Score:122 bits(305), Expect:3e-26, Method:Compositional matrix adjust., Identities:109/385(28%), Positives:180/385(46%), Gaps:36/385(9%) Query 1486 LTYEEAICGNDSSEFISAINRSSSPGFPWIRDRIKGTKGKQGWFGAEGEYI-LDEDVFEA 1544 L E AI G + I AIN SSPG+P++++++ TK W G ++ + + + Sbjct 1829 LDIEMAITG---APGIDAINMDSSPGYPYVQEKL--TKRDLIWLDDNGMFLGVHPRLAQR 1883 Query 1545 VKTRIQNAKNGVRTPVMWVDTLKDERRPIEKVDQLKTRVFSNGPMDFSITFRMYYLGFIA 1604 + +N V++ KDE RP++KV + KTR + P+D++I RMY+ I+ Sbjct 1884 ILFNTTMMENCSDLDVVFTTCPKDELRPLDKVLESKTRAIDSCPLDYTILCRMYWGPAIS 1943 Query 1605 HLMENR-ITNEVSIGTNVYSQDWNKTVRKLKTMGPKVIAGDFSTFDGSLNVCIMEKFADL 1663 + N V+IG + Q W++ + + G + DFS FD SL+ ++ + + Sbjct 1944 YFHLNPGFHTGVAIGIDPDRQ-WDQLFKTMIRFGDVGLDLDFSAFDASLSPFMIREAGRI 2002 Query 1664 ANEFYDDGSENALIRHVLLMDVYNSTHICGDSVYMMTHSQPSGNPATTPLNCFINSMGLR 1723 E G+ N ++ +Y S H+ + Y + S PSG+P T LN IN++ L Sbjct 2003 LTEM--SGAPNHFGEALINTIIY-SKHLLYNCCYHVYGSMPSGSPCTALLNSIINNVNLY 2059 Query 1724 MVFELCSKKYSALNGTKCYVMKDFSKHVSIVSYGDDNVINFSDEVSEWFNMET----ITE 1779 VF KK F + I+ YGDD +I FS +V ++ N+++ I + Sbjct 2060 YVFSKIFKKSPVF----------FCDAIRILCYGDDVLIVFSRQV-QFDNLDSIGQRIVD 2108 Query 1780 AFEKLGFTYTDELKGKNGEVPKWRTIEDVQYLKRKFRYDSKRKVWEAPLCMDTILEMPNW 1839 F KLG T T K VP+ + + ++ +LKR F R + TI + W Sbjct 2109 EFRKLGMTATSADK----SVPQLKPVSELTFLKRSFNLVDDRI--RPAIAEKTIWSLVAW 2162 Query 1840 CRGSLDIQEGTKVNCENAIMELSMH 1864 R + + ++ N ENA MH Sbjct 2163 QRSNAEFEQ----NLENAQWFAFMH 2183 Range 2: 1154 to 1359 Score:71.6 bits(174), Expect:6e-11, Method:Compositional matrix adjust., Identities:60/218(28%), Positives:101/218(46%), Gaps:20/218(9%) Query 476 VYEIQRIENM--YKKGLEISRNIAELKLPTKLTISFNTHMRYL----TEVFKSVDTSGAF 529 V +IQ +E Y+KG+++ + + + ++ H+ L V + + G+ Sbjct 1154 VLQIQDVEKFEQYQKGVDLIQKLRTVHSMAQVDPGLTVHLAPLRDCIARVHQKLKNLGSI 1213 Query 530 GNK--PRTQPIVIWLFGESGRGKSGMTWPLAIDLNNSLLDNVDEMRNFSKNIYMRNVEQE 587 R +P+V +L+G+ G GKS + LA + V+ KNIY + V + Sbjct 1214 NQAMVTRCEPVVCYLYGKRGGGKSLTSIALATKICKHY--GVEP----EKNIYTKPVASD 1267 Query 588 FWDNYQGQNIVCXDDFGQMRDSSSNPNPEFMELIRTANIAPYPLHMAHLEDKRKTKFTSK 647 +WD Y GQ + DD GQ +++ +F +L+ P L+MA LE+K + F+S Sbjct 1268 YWDGYSGQLVCIIDDIGQ--NTTDEDWSDFCQLVSG---CPMRLNMASLEEKGR-HFSSP 1321 Query 648 VIIMTSNVFEQDVNSLTFPDAFRRRVDLCAEVKNKDEF 685 II TSN ++ +A RR+ EVK F Sbjct 1322 FIIATSNWSNPSPKTVYVKEAIDRRLHFKVEVKPASFF 1359 >RecName: Full=Genome polyprotein; Contains: RecName: Full=Capsid protein VP0; AltName: Full=VP4-VP2; Contains: RecName: Full=Capsid protein VP4; AltName: Full=P1A; AltName: Full=Virion protein 4; Contains: RecName: Full=Capsid protein VP2; AltName: Full=P1B; AltName: Full=Virion protein 2; Contains: RecName: Full=Capsid protein VP3; AltName: Full=P1C; AltName: Full=Virion protein 3; Contains: RecName: Full=Protein VP1-2A; AltName: Full=VPX; Contains: RecName: Full=Capsid protein VP1; AltName: Full=P1D; AltName: Full=Virion protein 1; Contains: RecName: Full=Assembly signal 2A; AltName: Full=pX; Contains: RecName: Full=Protein 2BC; Contains: RecName: Full=Protein 2B; Short=P2B; Contains: RecName: Full=Protein 2C; Short=P2C; Contains: RecName: Full=Protein 3ABCD; Short=P3; Contains: RecName: Full=Protein 3ABC; Contains: RecName: Full=Protein 3AB; Contains: RecName: Full=Protein 3A; Short=P3A; Contains: RecName: Full=Viral protein genome-linked; Short=VPg; AltName: Full=Protein 3B; Short=P3B; Contains: RecName: Full=Protein 3CD; Contains: RecName: Full=Protease 3C; Short=P3C; AltName: Full=Picornain 3C; Contains: RecName: Full=RNA-directed RNA polymerase 3D-POL; Short=P3D-POL [Human hepatitis A virus Hu/Norway/NOR-21/1998] Sequence ID: Q9DWR1.4 Length: 2228 Range 1: 1829 to 2201 Score:121 bits(304), Expect:5e-26, Method:Compositional matrix adjust., Identities:110/403(27%), Positives:182/403(45%), Gaps:36/403(8%) Query 1486 LTYEEAICGNDSSEFISAINRSSSPGFPWIRDRIKGTKGKQGWFGAEGEYI-LDEDVFEA 1544 L E AI G + I AIN SSPG+P++++++ TK W G ++ L + + Sbjct 1829 LDIEMAITG---APGIDAINMDSSPGYPYVQEKL--TKRDLIWLDDNGMFLGLHPRLAQR 1883 Query 1545 VKTRIQNAKNGVRTPVMWVDTLKDERRPIEKVDQLKTRVFSNGPMDFSITFRMYYLGFIA 1604 + +N V++ KDE RP++KV + KTR + P+D++I RMY+ I+ Sbjct 1884 ILFNTTMMENCSDLDVVFTTCPKDELRPLDKVLESKTRAIDSCPLDYTILCRMYWGPAIS 1943 Query 1605 HLMENR-ITNEVSIGTNVYSQDWNKTVRKLKTMGPKVIAGDFSTFDGSLNVCIMEKFADL 1663 + N V+IG + Q W++ + + G + DFS FD SL+ ++ + + Sbjct 1944 YFHLNPGFHTGVAIGIDPDRQ-WDQLFKTMIRFGDVGLDLDFSAFDASLSPFMIREAGRI 2002 Query 1664 ANEFYDDGSENALIRHVLLMDVYNSTHICGDSVYMMTHSQPSGNPATTPLNCFINSMGLR 1723 E L+ + S H+ + Y + S PSG+P T LN IN++ L Sbjct 2003 LTEM---SGAPVHFGEALINTIIYSKHLLYNCCYHVCGSMPSGSPCTALLNSIINNVNLY 2059 Query 1724 MVFELCSKKYSALNGTKCYVMKDFSKHVSIVSYGDDNVINFSDEVSEWFNMET----ITE 1779 VF KK F V I+ YGDD +I FS +V + N+++ I + Sbjct 2060 YVFSKIFKKSPVF----------FCDAVRILCYGDDVLIVFSRQV-QIDNLDSIGQRIVD 2108 Query 1780 AFEKLGFTYTDELKGKNGEVPKWRTIEDVQYLKRKFRYDSKRKVWEAPLCMDTILEMPNW 1839 F+KLG T T K VP+ + + ++ +LKR F R + TI + W Sbjct 2109 EFKKLGMTATSADK----SVPQLKPVSELTFLKRSFNLVEDRI--RPAIAEKTIWSLVAW 2162 Query 1840 CRGSLDIQEGTKVNCENAIMELSMHEEYVFDKWSKVISKAYQK 1882 R + + ++ N ENA MH + ++ + +K Sbjct 2163 QRNNAEFEQ----NLENAQWFAFMHGYEFYQQFYHFVQSCLEK 2201 Range 2: 1154 to 1359 Score:75.5 bits(184), Expect:5e-12, Method:Compositional matrix adjust., Identities:61/218(28%), Positives:102/218(46%), Gaps:20/218(9%) Query 476 VYEIQRIENM--YKKGLEISRNIAELKLPTKLTISFNTHMRYL----TEVFKSVDTSGAF 529 V +IQ +E Y+KG+++ + + + ++ H+ L V + + G+ Sbjct 1154 VLQIQDVEKFEQYQKGVDLIQKLRTVHSMAQVDPGLTVHLAPLRDCIARVHQKLKNLGSI 1213 Query 530 GNK--PRTQPIVIWLFGESGRGKSGMTWPLAIDLNNSLLDNVDEMRNFSKNIYMRNVEQE 587 PR +P+V +L+G+ G GKS + LA + V+ KNIY + V + Sbjct 1214 NQAMVPRCEPVVCYLYGKRGGGKSLTSIALATKICKHY--GVEP----EKNIYTKPVASD 1267 Query 588 FWDNYQGQNIVCXDDFGQMRDSSSNPNPEFMELIRTANIAPYPLHMAHLEDKRKTKFTSK 647 +WD Y GQ + DD GQ +++ +F +L+ P L+MA LE+K + F+S Sbjct 1268 YWDGYSGQLVCIIDDIGQ--NTTDEDWSDFCQLVSG---CPMRLNMASLEEKGR-HFSSP 1321 Query 648 VIIMTSNVFEQDVNSLTFPDAFRRRVDLCAEVKNKDEF 685 II TSN ++ +A RR+ EVK F Sbjct 1322 FIIATSNWSNPSPKTVYVKEAIDRRLHFKVEVKPASFF 1359 >RecName: Full=RNA1 polyprotein; AltName: Full=P1; Contains: RecName: Full=P1A protein; Short=1A; AltName: Full=Protease cofactor; Contains: RecName: Full=Putative ATP-dependent helicase; AltName: Full=1B; AltName: Full=Membrane-binding protein; AltName: Full=NTP-binding protein; Short=NTB; Contains: RecName: Full=Viral genome-linked protein; AltName: Full=1C-VPg; Contains: RecName: Full=Picornain 3C-like protease; Short=3C-like protease; AltName: Full=1D-PRO; Contains: RecName: Full=RNA-directed RNA polymerase; AltName: Full=1E-POL [Beet ringspot virus] Sequence ID: P18522.1 Length: 2264 Range 1: 1578 to 1969 Score:120 bits(301), Expect:9e-26, Method:Compositional matrix adjust., Identities:110/409(27%), Positives:181/409(44%), Gaps:48/409(11%) Query 1508 SSPGFPWIRD-RIKGTKGKQGWF--GAEGEYILDEDVFEAV--KTRIQNAKNGVRTPVMW 1562 +SPG+P+ ++ R + KGK +F +G L E A + ++ KN V V+ Sbjct 1578 TSPGYPYFKNNRAEKLKGKSAYFEEAEDGTLKLKEGGMAAKLHENLVEFTKNEVPELVV- 1636 Query 1563 VDTLKDERRPIEKVDQLKTRVFSNGPMDFSITFRMYYLGFIAHLMENRITNEVSIGTNVY 1622 ++ KDE P K+ R+F P+ +++ R F L NR +GTN Y Sbjct 1637 IECTKDELLPERKIKVGACRLFEIMPLHYNLFLRQKTCAFTQFLQHNRHVLPCQVGTNPY 1696 Query 1623 SQDWNKTVRKLKTMGPK---VIAGDFSTFDGSLNVCIMEKFADLANEFYDDGSENALI-- 1677 S++W + +L M PK I D+S FDG LN ++E A + N Y E+ + Sbjct 1697 SREWGHMLNRL--MRPKTNEAINCDYSGFDGLLNAQVIECIAKMINRLYALSGESEVQQA 1754 Query 1678 -RHVLLMDVYNSTHICGDSVYMMTHSQPSGNPATTPLNCFINSMGLRMVFELCSKKYSAL 1736 R+ +LM + G VY + PSG T +N N + +R ++ + K Sbjct 1755 QRYNMLMALVGRYAFVGPEVYKVNCGLPSGFALTVVVNSVFNEILIRYAYKKLAPKPE-- 1812 Query 1737 NGTKCYVMKDFSKHVSIVSYGDDNVINFSDEVSEWFNMETITEAFEKLGFTYTDELKGKN 1796 F++ V ++ YGDDN+I+ S ++ WF E I + TD G + Sbjct 1813 -------RNRFNQVVCLLVYGDDNLISVSPSIASWFTGEAIRITLAEKKVKITD---GSD 1862 Query 1797 GEVP--KWRTIEDVQYLKRKF-RYDSKRKVWEAPLCMDTILEMPNWC------------- 1840 + P + ++ ++ +LKRKF + D+ + +APL I W Sbjct 1863 KDAPTIEAKSFWELDFLKRKFLKLDN--GIVQAPLDRSAIFSSLYWLTPDKSKFHASQRA 1920 Query 1841 ---RGSLDIQEGTKVNCENAIMELSMHEE-YVFDKWSKVISKAYQKATG 1885 +G++D+ E +N A+MEL +H + F + KA ATG Sbjct 1921 SDFQGTVDVVEELILNVNVALMELYLHNDPREFSRVRDFYIKALPLATG 1969 >RecName: Full=Genome polyprotein; Contains: RecName: Full=Capsid protein VP0; AltName: Full=VP4-VP2; Contains: RecName: Full=Capsid protein VP4; AltName: Full=P1A; AltName: Full=Virion protein 4; Contains: RecName: Full=Capsid protein VP2; AltName: Full=P1B; AltName: Full=Virion protein 2; Contains: RecName: Full=Capsid protein VP3; AltName: Full=P1C; AltName: Full=Virion protein 3; Contains: RecName: Full=Protein VP1-2A; AltName: Full=VPX; Contains: RecName: Full=Capsid protein VP1; AltName: Full=P1D; AltName: Full=Virion protein 1; Contains: RecName: Full=Assembly signal 2A; AltName: Full=pX; Contains: RecName: Full=Protein 2BC; Contains: RecName: Full=Protein 2B; Short=P2B; Contains: RecName: Full=Protein 2C; Short=P2C; Contains: RecName: Full=Protein 3ABCD; Short=P3; Contains: RecName: Full=Protein 3ABC; Contains: RecName: Full=Protein 3AB; Contains: RecName: Full=Protein 3A; Short=P3A; Contains: RecName: Full=Viral protein genome-linked; Short=VPg; AltName: Full=Protein 3B; Short=P3B; Contains: RecName: Full=Protein 3CD; Contains: RecName: Full=Protease 3C; Short=P3C; AltName: Full=Picornain 3C; Contains: RecName: Full=RNA-directed RNA polymerase 3D-POL; Short=P3D-POL [Human hepatitis A virus Hu/Germany/GBM/1976] Sequence ID: Q67825.1 Length: 2227 Range 1: 1840 to 2200 Score:119 bits(298), Expect:2e-25, Method:Compositional matrix adjust., Identities:109/390(28%), Positives:177/390(45%), Gaps:37/390(9%) Query 1501 ISAINRSSSPGFPWIRDRIKGTKGKQGWFGAEGEYI-LDEDVFEAVKTRIQNAKNGVRTP 1559 I AIN SSPGFP++++++ TK W G + + + + + +N Sbjct 1840 IDAINMDSSPGFPYVQEKL--TKRDLIWLDENGLLLGVHPRLAQRILFNTVMMENCSDLD 1897 Query 1560 VMWVDTLKDERRPIEKVDQLKTRVFSNGPMDFSITFRMYYLGFIAHLMENR-ITNEVSIG 1618 V++ KDE RP+EKV + KTR P+D++I RMY+ I++ N V+IG Sbjct 1898 VVFTTCPKDELRPLEKVLESKTRAIDACPLDYTILCRMYWGPAISYFHLNPGFHTGVAIG 1957 Query 1619 TNVYSQDWNKTVRKLKTMGPKVIAGDFSTFDGSLNVCIMEKFADLANEFYDDGSE--NAL 1676 + Q W++ + + G + DFS FD SL+ ++ + + +E S AL Sbjct 1958 IDPDRQ-WDELFKTMIRFGDVGLDLDFSAFDASLSPFMIREAGRIMSELSGTPSHFGTAL 2016 Query 1677 IRHVLLMDVYNSTHICGDSVYMMTHSQPSGNPATTPLNCFINSMGLRMVFELCSKKYSAL 1736 I ++ S H+ + Y + S PSG+P T LN IN++ L VF K Sbjct 2017 INTIIY-----SKHLLYNCCYHVYGSMPSGSPCTALLNSIINNINLYYVFSKIFGKSPVF 2071 Query 1737 NGTKCYVMKDFSKHVSIVSYGDDNVINFSDEVSEWFNM----ETITEAFEKLGFTYTDEL 1792 F + + I+ YGDD +I FS +V + N+ + I + F KLG T T Sbjct 2072 ----------FCQALRILCYGDDVLIVFSRDV-QIDNLDLIGQKIVDEFRKLGMTATSAD 2120 Query 1793 KGKNGEVPKWRTIEDVQYLKRKFRYDSKRKVWEAPLCMDTILEMPNWCRGSLDIQEGTKV 1852 K VP+ + + ++ +LKR F R + TI + W RG+ + ++ Sbjct 2121 K----NVPQLKPVSELTFLKRSFNLVEDRI--RPAISEKTIWSLIAWQRGNAEFEQ---- 2170 Query 1853 NCENAIMELSMHEEYVFDKWSKVISKAYQK 1882 N ENA MH + K+ + +K Sbjct 2171 NLENAQWFAFMHGYEFYQKFYYFVQSCLEK 2200 Range 2: 1154 to 1359 Score:70.5 bits(171), Expect:1e-10, Method:Compositional matrix adjust., Identities:59/218(27%), Positives:102/218(46%), Gaps:20/218(9%) Query 476 VYEIQRIE--NMYKKGLEISRNIAELKLPTKLTISFNTHMRYL----TEVFKSVDTSGAF 529 + +IQ +E + Y+KG+++ + + + ++ + H+ L V + + G+ Sbjct 1154 ILQIQDVEKFDQYQKGVDLIQKLRTVHSMAQVDPNLGVHLSPLRDCIARVHQKLKNLGSI 1213 Query 530 GNK--PRTQPIVIWLFGESGRGKSGMTWPLAIDLNNSLLDNVDEMRNFSKNIYMRNVEQE 587 R +P+V +L G+ G GKS + LA + V+ KNIY + V + Sbjct 1214 NQAMVTRCEPVVCYLIGKRGGGKSLTSIALATKICKHY--GVEP----EKNIYTKPVASD 1267 Query 588 FWDNYQGQNIVCXDDFGQMRDSSSNPNPEFMELIRTANIAPYPLHMAHLEDKRKTKFTSK 647 +WD Y GQ + DD GQ +++ +F +L+ P L+MA LE+K + F+S Sbjct 1268 YWDGYSGQLVCIIDDIGQ--NTTDEDWSDFCQLVSG---CPMRLNMASLEEKGR-HFSSP 1321 Query 648 VIIMTSNVFEQDVNSLTFPDAFRRRVDLCAEVKNKDEF 685 II TSN ++ +A RR+ EVK F Sbjct 1322 FIIATSNWSNPSPKTVYVKEAIDRRLHFKVEVKPASFF 1359 >RecName: Full=Genome polyprotein; Contains: RecName: Full=Capsid protein VP0; AltName: Full=VP4-VP2; Contains: RecName: Full=Capsid protein VP4; AltName: Full=P1A; AltName: Full=Virion protein 4; Contains: RecName: Full=Capsid protein VP2; AltName: Full=P1B; AltName: Full=Virion protein 2; Contains: RecName: Full=Capsid protein VP3; AltName: Full=P1C; AltName: Full=Virion protein 3; Contains: RecName: Full=Protein VP1-2A; AltName: Full=VPX; Contains: RecName: Full=Capsid protein VP1; AltName: Full=P1D; AltName: Full=Virion protein 1; Contains: RecName: Full=Assembly signal 2A; AltName: Full=pX; Contains: RecName: Full=Protein 2BC; Contains: RecName: Full=Protein 2B; Short=P2B; Contains: RecName: Full=Protein 2C; Short=P2C; Contains: RecName: Full=Protein 3ABCD; Short=P3; Contains: RecName: Full=Protein 3ABC; Contains: RecName: Full=Protein 3AB; Contains: RecName: Full=Protein 3A; Short=P3A; Contains: RecName: Full=Viral protein genome-linked; Short=VPg; AltName: Full=Protein 3B; Short=P3B; Contains: RecName: Full=Protein 3CD; Contains: RecName: Full=Protease 3C; Short=P3C; AltName: Full=Picornain 3C; Contains: RecName: Full=RNA-directed RNA polymerase 3D-POL; Short=P3D-POL [Human hepatitis A virus Hu/Sierra Leone/SLF88/1988] Sequence ID: Q8V0N6.1 Length: 2227 Range 1: 1840 to 2200 Score:119 bits(298), Expect:2e-25, Method:Compositional matrix adjust., Identities:108/390(28%), Positives:179/390(45%), Gaps:37/390(9%) Query 1501 ISAINRSSSPGFPWIRDRIKGTKGKQGWFGAEGEYI-LDEDVFEAVKTRIQNAKNGVRTP 1559 I AIN SSPGFP++++R+ TK W G + + + + + +N Sbjct 1840 IDAINMDSSPGFPYVQERL--TKRDLIWLDENGLLLGIHPRLAQRILFNTVMMENCSDLD 1897 Query 1560 VMWVDTLKDERRPIEKVDQLKTRVFSNGPMDFSITFRMYYLGFIAHLMENR-ITNEVSIG 1618 V++ KDE RP++KV + KTR P+D++I RMY+ I++ N V+IG Sbjct 1898 VIFTTCPKDELRPLDKVLESKTRAIDACPLDYTILCRMYWGPAISYFHLNPGFHTGVAIG 1957 Query 1619 TNVYSQDWNKTVRKLKTMGPKVIAGDFSTFDGSLNVCIMEKFADLANEFYDDGSE--NAL 1676 + Q W++ + + G + DFS FD SL+ ++ + + +E S AL Sbjct 1958 IDPDRQ-WDELFKTMIRFGDVGLDLDFSAFDASLSPFMIREAGRIMSEISGTPSHFGTAL 2016 Query 1677 IRHVLLMDVYNSTHICGDSVYMMTHSQPSGNPATTPLNCFINSMGLRMVFELCSKKYSAL 1736 I ++ S H+ + Y + S PSG+P T LN IN++ L VF +K Sbjct 2017 INTIIY-----SKHLLYNCCYHVYGSMPSGSPCTALLNSIINNINLYYVFSKIFRKSPVF 2071 Query 1737 NGTKCYVMKDFSKHVSIVSYGDDNVINFSDEVSEWFNMETITEA----FEKLGFTYTDEL 1792 FS+ V I+ YGDD +I FS ++ + N++ I + F++LG T T Sbjct 2072 ----------FSQAVRILCYGDDVLIVFSRDI-QIDNLDQIGQKIVHEFKQLGMTATSAD 2120 Query 1793 KGKNGEVPKWRTIEDVQYLKRKFRYDSKRKVWEAPLCMDTILEMPNWCRGSLDIQEGTKV 1852 K VP+ + + ++ +LKR F R + TI + W R + + ++ Sbjct 2121 K----TVPQLKPVSELTFLKRSFNLVEDRV--RPAISEKTIWSLVAWQRSNAEFEQ---- 2170 Query 1853 NCENAIMELSMHEEYVFDKWSKVISKAYQK 1882 N ENA MH + K+ + +K Sbjct 2171 NLENAQWFAFMHGFEFYQKFYYFVQSCLEK 2200 Range 2: 1154 to 1359 Score:71.2 bits(173), Expect:1e-10, Method:Compositional matrix adjust., Identities:60/218(28%), Positives:102/218(46%), Gaps:20/218(9%) Query 476 VYEIQRIENM--YKKGLEISRNIAELKLPTKLTISFNTHMRYL----TEVFKSVDTSGAF 529 + +IQ +E Y+KG+++ + + + ++ S H+ L V + + G+ Sbjct 1154 ILQIQDVEKFEQYQKGVDLIQKLRTVHSMAQVDPSLMIHLSPLRDCIARVHQKLKNLGSI 1213 Query 530 GNK--PRTQPIVIWLFGESGRGKSGMTWPLAIDLNNSLLDNVDEMRNFSKNIYMRNVEQE 587 R +P+V +L+G+ G GKS + LA + V+ KNIY + V + Sbjct 1214 NQAMVTRCEPVVCYLYGKRGGGKSLTSIALATKICKHY--GVEP----EKNIYTKPVASD 1267 Query 588 FWDNYQGQNIVCXDDFGQMRDSSSNPNPEFMELIRTANIAPYPLHMAHLEDKRKTKFTSK 647 +WD Y GQ + DD GQ +++ +F +L+ P L+MA LE+K + F+S Sbjct 1268 YWDGYSGQLVCIIDDIGQ--NTTDEDWSDFCQLVSG---CPMRLNMASLEEKGR-HFSSP 1321 Query 648 VIIMTSNVFEQDVNSLTFPDAFRRRVDLCAEVKNKDEF 685 II TSN ++ +A RR+ EVK F Sbjct 1322 FIIATSNWSNPSPKTVYVKEAIDRRLHFKIEVKPASFF 1359 >RecName: Full=Genome polyprotein; Contains: RecName: Full=Capsid protein VP0; AltName: Full=VP4-VP2; Contains: RecName: Full=Capsid protein VP4; AltName: Full=P1A; AltName: Full=Virion protein 4; Contains: RecName: Full=Capsid protein VP2; AltName: Full=P1B; AltName: Full=Virion protein 2; Contains: RecName: Full=Capsid protein VP3; AltName: Full=P1C; AltName: Full=Virion protein 3; Contains: RecName: Full=Protein VP1-2A; AltName: Full=VPX; Contains: RecName: Full=Capsid protein VP1; AltName: Full=P1D; AltName: Full=Virion protein 1; Contains: RecName: Full=Assembly signal 2A; AltName: Full=pX; Contains: RecName: Full=Protein 2BC; Contains: RecName: Full=Protein 2B; Short=P2B; Contains: RecName: Full=Protein 2C; Short=P2C; Contains: RecName: Full=Protein 3ABCD; Short=P3; Contains: RecName: Full=Protein 3ABC; Contains: RecName: Full=Protein 3AB; Contains: RecName: Full=Protein 3A; Short=P3A; Contains: RecName: Full=Viral protein genome-linked; Short=VPg; AltName: Full=Protein 3B; Short=P3B; Contains: RecName: Full=Protein 3CD; Contains: RecName: Full=Protease 3C; Short=P3C; AltName: Full=Picornain 3C; Contains: RecName: Full=RNA-directed RNA polymerase 3D-POL; Short=P3D-POL [Human hepatitis A virus Hu/Northern Africa/MBB/1978] Sequence ID: P13901.1 Length: 2227 Range 1: 1840 to 2200 Score:119 bits(297), Expect:3e-25, Method:Compositional matrix adjust., Identities:107/388(28%), Positives:175/388(45%), Gaps:33/388(8%) Query 1501 ISAINRSSSPGFPWIRDRIKGTKGKQGWFGAEGEYI-LDEDVFEAVKTRIQNAKNGVRTP 1559 I AIN SSPGFP++++R+ TK W G + + + + + +N Sbjct 1840 IDAINMDSSPGFPYVQERL--TKRDLIWLDENGLLLGVHPRLAQRILFNTVMMENCSDLD 1897 Query 1560 VMWVDTLKDERRPIEKVDQLKTRVFSNGPMDFSITFRMYYLGFIAHLMENR-ITNEVSIG 1618 V++ KDE RP+EKV + KTR P+D++I RMY+ I++ N V+IG Sbjct 1898 VVFTTCPKDELRPLEKVLESKTRAIDACPLDYTILCRMYWGPAISYFHLNPGFHTGVAIG 1957 Query 1619 TNVYSQDWNKTVRKLKTMGPKVIAGDFSTFDGSLNVCIMEKFADLANEFYDDGSENALIR 1678 + Q W++ + + G + DFS FD SL+ ++ + + +E S Sbjct 1958 IDPDCQ-WDELFKTMIRFGDVGLDLDFSAFDASLSPFMIREAGRIMSELSGTPSH---FG 2013 Query 1679 HVLLMDVYNSTHICGDSVYMMTHSQPSGNPATTPLNCFINSMGLRMVFELCSKKYSALNG 1738 L+ + S H+ + Y + S PSG+P T LN IN++ L VF K Sbjct 2014 TALMNTIIYSKHLLYNCCYHVCGSMPSGSPCTALLNSIINNVNLYYVFSKIFGKSPVF-- 2071 Query 1739 TKCYVMKDFSKHVSIVSYGDDNVINFSDEVSEWFNM----ETITEAFEKLGFTYTDELKG 1794 F + + I+ YGDD +I FS +V + N+ + I + F+KLG T T K Sbjct 2072 --------FCQALKILCYGDDVLIVFSRDV-QIDNLDLIGQKIVDEFKKLGMTATSADK- 2121 Query 1795 KNGEVPKWRTIEDVQYLKRKFRYDSKRKVWEAPLCMDTILEMPNWCRGSLDIQEGTKVNC 1854 VP+ + + ++ +LKR F R + TI + W R + + ++ N Sbjct 2122 ---NVPQLKPVSELTFLKRSFNLVEDRI--RPAISEKTIWSLIAWQRSNAEFEQ----NL 2172 Query 1855 ENAIMELSMHEEYVFDKWSKVISKAYQK 1882 ENA MH + K+ + +K Sbjct 2173 ENAQWFAFMHGYEFYQKFYYFVQSCLEK 2200 Range 2: 1144 to 1360 Score:70.9 bits(172), Expect:1e-10, Method:Compositional matrix adjust., Identities:63/230(27%), Positives:108/230(46%), Gaps:21/230(9%) Query 466 KSIVENIMKDVYEIQRIENM--YKKGLEISRNIAELKLPTKLTISFNTHMRYL----TEV 519 K+I E + +IQ +E Y+KG+++ + + + ++ + H+ L V Sbjct 1144 KAIEEADKFSILQIQDVEKFEQYQKGVDLIQKLRTVHSMAQVDPNLMVHLSPLRDCIARV 1203 Query 520 FKSVDTSGAFGNK--PRTQPIVIWLFGESGRGKSGMTWPLAIDLNNSLLDNVDEMRNFSK 577 + + G+ R +P+V +L+G+ G GKS + LA + V+ K Sbjct 1204 HQKLKNLGSINQAMVTRCEPVVCYLYGKRGGGKSLTSIALATKICKHY--GVEP----EK 1257 Query 578 NIYMRNVEQEFWDNYQGQNIVCXDDFGQMRDSSSNPNPEFMELIRTANIAPYPLHMAHLE 637 NIY + V ++WD Y GQ + DD GQ +++ +F +L+ P L+MA LE Sbjct 1258 NIYTKPVASDYWDGYSGQLVCIIDDIGQ--NTTDEDWSDFCQLVSG---CPLRLNMASLE 1312 Query 638 DKRKTKFTSKVIIMTSNVFEQDVNSLTFPDAFRRRVDLCAEVKNKDEFTK 687 +K + F+S II TSN ++ +A RR+ EV N F+K Sbjct 1313 EKGR-HFSSPFIIATSNWSNPSPKTVYVKEAIDRRLHFKVEV-NPASFSK 1360 >RecName: Full=Genome polyprotein; Contains: RecName: Full=Capsid protein VP0; AltName: Full=VP4-VP2; Contains: RecName: Full=Capsid protein VP4; AltName: Full=P1A; AltName: Full=Virion protein 4; Contains: RecName: Full=Capsid protein VP2; AltName: Full=P1B; AltName: Full=Virion protein 2; Contains: RecName: Full=Capsid protein VP3; AltName: Full=P1C; AltName: Full=Virion protein 3; Contains: RecName: Full=Protein VP1-2A; AltName: Full=VP1-pX; Contains: RecName: Full=Capsid protein VP1; AltName: Full=P1D; AltName: Full=Virion protein 1; Contains: RecName: Full=Assembly signal 2A; AltName: Full=pX; Contains: RecName: Full=Protein 2BC; Contains: RecName: Full=Protein 2B; Short=P2B; Contains: RecName: Full=Protein 2C; Short=P2C; Contains: RecName: Full=Protein 3ABCD; Short=P3; Contains: RecName: Full=Protein 3ABC; Contains: RecName: Full=Protein 3AB; Contains: RecName: Full=Protein 3A; Short=P3A; Contains: RecName: Full=Viral protein genome-linked; Short=VPg; AltName: Full=Protein 3B; Short=P3B; Contains: RecName: Full=Protein 3CD; Contains: RecName: Full=Protease 3C; Short=P3C; AltName: Full=Picornain 3C; Contains: RecName: Full=RNA-directed RNA polymerase 3D-POL; Short=P3D-POL [Human hepatitis A virus Hu/Australia/HM175/1976] Sequence ID: P08617.1 Length: 2227 Range 1: 1840 to 2200 Score:118 bits(296), Expect:4e-25, Method:Compositional matrix adjust., Identities:109/390(28%), Positives:177/390(45%), Gaps:37/390(9%) Query 1501 ISAINRSSSPGFPWIRDRIKGTKGKQGWFGAEGEYI-LDEDVFEAVKTRIQNAKNGVRTP 1559 I AIN SSPGFP++++++ TK W G + + + + + +N Sbjct 1840 IDAINMDSSPGFPYVQEKL--TKRDLIWLDENGLLLGVHPRLAQRILFNTVMMENCSDLD 1897 Query 1560 VMWVDTLKDERRPIEKVDQLKTRVFSNGPMDFSITFRMYYLGFIAHLMENR-ITNEVSIG 1618 V++ KDE RP+EKV + KTR P+D+SI RMY+ I++ N V+IG Sbjct 1898 VVFTTCPKDELRPLEKVLESKTRAIDACPLDYSILCRMYWGPAISYFHLNPGFHTGVAIG 1957 Query 1619 TNVYSQDWNKTVRKLKTMGPKVIAGDFSTFDGSLNVCIMEKFADLANEFYDDGSE--NAL 1676 + Q W++ + + G + DFS FD SL+ ++ + + +E S AL Sbjct 1958 IDPDRQ-WDELFKTMIRFGDVGLDLDFSAFDASLSPFMIREAGRIMSELSGTPSHFGTAL 2016 Query 1677 IRHVLLMDVYNSTHICGDSVYMMTHSQPSGNPATTPLNCFINSMGLRMVFELCSKKYSAL 1736 I ++ S H+ + Y + S PSG+P T LN IN++ L VF K Sbjct 2017 INTIIY-----SKHLLYNCCYHVCGSMPSGSPCTALLNSIINNVNLYYVFSKIFGKSPVF 2071 Query 1737 NGTKCYVMKDFSKHVSIVSYGDDNVINFSDEVSEWFNM----ETITEAFEKLGFTYTDEL 1792 F + + I+ YGDD +I FS +V + N+ + I + F+KLG T T Sbjct 2072 ----------FCQALKILCYGDDVLIVFSRDV-QIDNLDLIGQKIVDEFKKLGMTATSAD 2120 Query 1793 KGKNGEVPKWRTIEDVQYLKRKFRYDSKRKVWEAPLCMDTILEMPNWCRGSLDIQEGTKV 1852 K VP+ + + ++ +LKR F R + TI + W R + + ++ Sbjct 2121 K----NVPQLKPVSELTFLKRSFNLVEDRI--RPAISEKTIWSLIAWQRSNAEFEQ---- 2170 Query 1853 NCENAIMELSMHEEYVFDKWSKVISKAYQK 1882 N ENA MH + K+ + +K Sbjct 2171 NLENAQWFAFMHGYEFYQKFYYFVQSCLEK 2200 Range 2: 1154 to 1359 Score:70.9 bits(172), Expect:1e-10, Method:Compositional matrix adjust., Identities:59/218(27%), Positives:102/218(46%), Gaps:20/218(9%) Query 476 VYEIQRIENM--YKKGLEISRNIAELKLPTKLTISFNTHMRYL----TEVFKSVDTSGAF 529 + +IQ +E Y+KG+++ + + + ++ + H+ L V + + G+ Sbjct 1154 ILQIQDVEKFEQYQKGVDLIQKLRTVHSMAQVDPNLMVHLSPLRDCIARVHQKLKNLGSI 1213 Query 530 GNK--PRTQPIVIWLFGESGRGKSGMTWPLAIDLNNSLLDNVDEMRNFSKNIYMRNVEQE 587 R +P+V +L+G+ G GKS + LA + V+ KNIY + V + Sbjct 1214 NQAMVTRCEPVVCYLYGKRGGGKSLTSIALATKICKHY--GVEP----EKNIYTKPVASD 1267 Query 588 FWDNYQGQNIVCXDDFGQMRDSSSNPNPEFMELIRTANIAPYPLHMAHLEDKRKTKFTSK 647 +WD Y GQ + DD GQ +++ +F +L+ P L+MA LE+K + F+S Sbjct 1268 YWDGYSGQLVCIIDDIGQ--NTTDEDWSDFCQLVSG---CPMRLNMASLEEKGR-HFSSP 1321 Query 648 VIIMTSNVFEQDVNSLTFPDAFRRRVDLCAEVKNKDEF 685 II TSN ++ +A RR+ EVK F Sbjct 1322 FIIATSNWSNPSPKTVYVKEAIDRRLHFKVEVKPASFF 1359 >RecName: Full=RNA1 polyprotein; AltName: Full=P1; Contains: RecName: Full=P1A protein; Short=1A; AltName: Full=Protease cofactor; Contains: RecName: Full=Putative ATP-dependent helicase; AltName: Full=1B; AltName: Full=Membrane-binding protein; AltName: Full=NTP-binding protein; Short=NTB; Contains: RecName: Full=Viral genome-linked protein; AltName: Full=1C-VPg; Contains: RecName: Full=Picornain 3C-like protease; Short=3C-like protease; AltName: Full=1D-PRO; Contains: RecName: Full=RNA-directed RNA polymerase; AltName: Full=1E-POL [Grapevine chrome mosaic virus] Sequence ID: P13025.1 Length: 2252 Range 1: 1564 to 1934 Score:117 bits(294), Expect:7e-25, Method:Compositional matrix adjust., Identities:100/386(26%), Positives:170/386(44%), Gaps:42/386(10%) Query 1508 SSPGFPWIRDRIKGTKGKQGWF--GAEGEYILDE--DVFEAVKTRIQNAKNGVRTPVMWV 1563 +SPG+P+ +++ G KGK +F +G L E E + Q AK V V+ + Sbjct 1564 TSPGYPYFKNKGLG-KGKHPYFEECEDGSLKLKEGSQAAELYENMAQFAKEEVPELVV-I 1621 Query 1564 DTLKDERRPIEKVDQLKTRVFSNGPMDFSITFRMYYLGFIAHLMENRITNEVSIGTNVYS 1623 + KDE P K+ R+F P+ +++ R+ F A L NR +GTN YS Sbjct 1622 ECPKDELLPARKIKVGPCRLFEIMPLHYNLLLRVKTCAFTAFLQHNRHRLPCQVGTNPYS 1681 Query 1624 QDWNKTVRKLKTMGP-KVIAGDFSTFDGSLNVCIMEKFADLANEFYDDGSENALI---RH 1679 ++W + +L+ + + I D+S FDG L ++E A + N Y E+ ++ R Sbjct 1682 REWGHLLNRLRRVKTNEAINCDYSGFDGLLTPQLVEMMAKMINRLYLRSGESEVMQAQRL 1741 Query 1680 VLLMDVYNSTHICGDSVYMMTHSQPSGNPATTPLNCFINSMGLRMVFELCSKKYSALNGT 1739 ++M + + G VY + PSG T +N N + +R ++ + Sbjct 1742 NMIMALCGRYALVGTQVYKVNCGLPSGFALTVVMNSIFNEILIRYAYKTLAPTPEK---- 1797 Query 1740 KCYVMKDFSKHVSIVSYGDDNVINFSDEVSEWFNMETITEAFEKLGFTYTDELKGKNGEV 1799 F +V ++ YGDDN+I+ S V+ WF E I + TD G + + Sbjct 1798 -----NSFGINVCLLVYGDDNLISVSPAVASWFTGEAIRVTLAEKRIKITD---GSDKDA 1849 Query 1800 P--KWRTIEDVQYLKRKFR-YDSKRKVWEAPLCMDTILEMPNWCR--------------- 1841 P + + ++ +LKRKF + +VW APL I +W Sbjct 1850 PTIEAKPFSELDFLKRKFYVHPEHGQVW-APLDKSAIFSCLHWLTPQKSKFALQEKACDY 1908 Query 1842 -GSLDIQEGTKVNCENAIMELSMHEE 1866 G +D+ E +N +++EL +H + Sbjct 1909 LGEVDVVEELIINVNVSLVELYLHND 1934 >RecName: Full=Genome polyprotein; Contains: RecName: Full=Capsid protein VP0; AltName: Full=VP4-VP2; Contains: RecName: Full=Capsid protein VP4; AltName: Full=P1A; AltName: Full=Virion protein 4; Contains: RecName: Full=Capsid protein VP2; AltName: Full=P1B; AltName: Full=Virion protein 2; Contains: RecName: Full=Capsid protein VP3; AltName: Full=P1C; AltName: Full=Virion protein 3; Contains: RecName: Full=Protein VP1-2A; AltName: Full=VPX; Contains: RecName: Full=Capsid protein VP1; AltName: Full=P1D; AltName: Full=Virion protein 1; Contains: RecName: Full=Assembly signal 2A; AltName: Full=pX; Contains: RecName: Full=Protein 2BC; Contains: RecName: Full=Protein 2B; Short=P2B; Contains: RecName: Full=Protein 2C; Short=P2C; Contains: RecName: Full=Protein 3ABCD; Short=P3; Contains: RecName: Full=Protein 3ABC; Contains: RecName: Full=Protein 3AB; Contains: RecName: Full=Protein 3A; Short=P3A; Contains: RecName: Full=Viral protein genome-linked; Short=VPg; AltName: Full=Protein 3B; Short=P3B; Contains: RecName: Full=Protein 3CD; Contains: RecName: Full=Protease 3C; Short=P3C; AltName: Full=Picornain 3C; Contains: RecName: Full=RNA-directed RNA polymerase 3D-POL; Short=P3D-POL [Human hepatitis A virus Hu/Los Angelos/LA/1975] Sequence ID: P06441.1 Length: 2227 Range 1: 1840 to 2200 Score:117 bits(293), Expect:7e-25, Method:Compositional matrix adjust., Identities:108/390(28%), Positives:177/390(45%), Gaps:37/390(9%) Query 1501 ISAINRSSSPGFPWIRDRIKGTKGKQGWFGAEGEYI-LDEDVFEAVKTRIQNAKNGVRTP 1559 I AIN SSPGFP++++++ TK W G + + + + + +N Sbjct 1840 IDAINMDSSPGFPYVQEKL--TKRDLIWLDENGLLLGVHPRLAQRILFNTVMMENCSDLD 1897 Query 1560 VMWVDTLKDERRPIEKVDQLKTRVFSNGPMDFSITFRMYYLGFIAHLMENR-ITNEVSIG 1618 V++ KDE RP+EKV + KTR P+D++I RMY+ I++ N V+IG Sbjct 1898 VVFTTCPKDELRPLEKVLESKTRAIDACPLDYTILCRMYWGPAISYFHLNPGFHTGVAIG 1957 Query 1619 TNVYSQDWNKTVRKLKTMGPKVIAGDFSTFDGSLNVCIMEKFADLANEFYDDGSE--NAL 1676 + Q W++ + + G + DFS FD SL+ ++ + + +E S AL Sbjct 1958 IDPDRQ-WDELFKTMIRFGDVGLDLDFSAFDASLSPFMIREAGRIMSELSGTPSHFGTAL 2016 Query 1677 IRHVLLMDVYNSTHICGDSVYMMTHSQPSGNPATTPLNCFINSMGLRMVFELCSKKYSAL 1736 I ++ S H+ + Y + S PSG+P T LN IN++ L VF K Sbjct 2017 INTIIY-----SKHLLYNCCYHVCGSMPSGSPCTALLNSIINNINLYYVFSKIFGKSPVF 2071 Query 1737 NGTKCYVMKDFSKHVSIVSYGDDNVINFSDEVSEWFNM----ETITEAFEKLGFTYTDEL 1792 F + + I+ YGDD +I FS +V + N+ + I + F+KLG T T Sbjct 2072 ----------FCQALRILCYGDDVLIVFSRDV-QIDNLDLIGQKIVDEFKKLGMTATSAD 2120 Query 1793 KGKNGEVPKWRTIEDVQYLKRKFRYDSKRKVWEAPLCMDTILEMPNWCRGSLDIQEGTKV 1852 K VP+ + + ++ +LKR F R + TI + W R + + ++ Sbjct 2121 K----NVPQLKPVSELTFLKRSFNLVEDRI--RPAISEKTIWSLMAWQRSNAEFEQ---- 2170 Query 1853 NCENAIMELSMHEEYVFDKWSKVISKAYQK 1882 N ENA MH + K+ + +K Sbjct 2171 NLENAQWFAFMHGYEFYQKFYYFVQSCLEK 2200 Range 2: 1154 to 1359 Score:72.0 bits(175), Expect:5e-11, Method:Compositional matrix adjust., Identities:59/218(27%), Positives:103/218(47%), Gaps:20/218(9%) Query 476 VYEIQRIE--NMYKKGLEISRNIAELKLPTKLTISFNTHMRYL----TEVFKSVDTSGAF 529 + +IQ +E + Y+KG+++ + + + ++ + H+ L V + + G+ Sbjct 1154 ILQIQDVEKFDQYQKGVDLIQKLRTVHSMAQVDPNLGVHLSPLRDCIARVHQKLKNLGSI 1213 Query 530 GNK--PRTQPIVIWLFGESGRGKSGMTWPLAIDLNNSLLDNVDEMRNFSKNIYMRNVEQE 587 R +P+V +L+G+ G GKS + LA + V+ KNIY + V + Sbjct 1214 NQAMVTRCEPVVCYLYGKRGGGKSLTSIALATKICKHY--GVEP----EKNIYTKPVASD 1267 Query 588 FWDNYQGQNIVCXDDFGQMRDSSSNPNPEFMELIRTANIAPYPLHMAHLEDKRKTKFTSK 647 +WD Y GQ + DD GQ +++ +F +L+ P L+MA LE+K + F+S Sbjct 1268 YWDGYSGQLVCIIDDIGQ--NTTDEDWSDFCQLVSG---CPMRLNMASLEEKGR-HFSSP 1321 Query 648 VIIMTSNVFEQDVNSLTFPDAFRRRVDLCAEVKNKDEF 685 II TSN ++ +A RR+ EVK F Sbjct 1322 FIIATSNWSNPSPKTVYVKEAIDRRLHFKVEVKPASFF 1359 >RecName: Full=Genome polyprotein; Contains: RecName: Full=Capsid protein VP0; AltName: Full=VP4-VP2; Contains: RecName: Full=Capsid protein VP4; AltName: Full=P1A; AltName: Full=Virion protein 4; Contains: RecName: Full=Capsid protein VP2; AltName: Full=P1B; AltName: Full=Virion protein 2; Contains: RecName: Full=Capsid protein VP3; AltName: Full=P1C; AltName: Full=Virion protein 3; Contains: RecName: Full=Protein VP1-2A; AltName: Full=VPX; Contains: RecName: Full=Capsid protein VP1; AltName: Full=P1D; AltName: Full=Virion protein 1; Contains: RecName: Full=Assembly signal 2A; AltName: Full=pX; Contains: RecName: Full=Protein 2BC; Contains: RecName: Full=Protein 2B; Short=P2B; Contains: RecName: Full=Protein 2C; Short=P2C; Contains: RecName: Full=Protein 3ABCD; Short=P3; Contains: RecName: Full=Protein 3ABC; Contains: RecName: Full=Protein 3AB; Contains: RecName: Full=Protein 3A; Short=P3A; Contains: RecName: Full=Viral protein genome-linked; Short=VPg; AltName: Full=Protein 3B; Short=P3B; Contains: RecName: Full=Protein 3CD; Contains: RecName: Full=Protease 3C; Short=P3C; AltName: Full=Picornain 3C; Contains: RecName: Full=RNA-directed RNA polymerase 3D-POL; Short=P3D-POL [Human hepatitis A virus Hu/Arizona/HAS-15/1979] Sequence ID: Q05794.2 Length: 2052 Range 1: 1674 to 2034 Score:117 bits(293), Expect:8e-25, Method:Compositional matrix adjust., Identities:108/390(28%), Positives:177/390(45%), Gaps:37/390(9%) Query 1501 ISAINRSSSPGFPWIRDRIKGTKGKQGWFGAEGEYI-LDEDVFEAVKTRIQNAKNGVRTP 1559 I AIN SSPGFP++++++ TK W G + + + + + +N Sbjct 1674 IDAINMDSSPGFPYVQEKL--TKRDLIWLDENGLLLGVHPRLAQRILFNTVMMENCSDLD 1731 Query 1560 VMWVDTLKDERRPIEKVDQLKTRVFSNGPMDFSITFRMYYLGFIAHLMENR-ITNEVSIG 1618 V++ KDE RP+EKV + KTR P+D++I RMY+ I++ N V+IG Sbjct 1732 VVFTTCPKDELRPLEKVLESKTRAIDACPLDYTILCRMYWGPAISYFHLNPGFHTGVAIG 1791 Query 1619 TNVYSQDWNKTVRKLKTMGPKVIAGDFSTFDGSLNVCIMEKFADLANEFYDDGSE--NAL 1676 + Q W++ + + G + DFS FD SL+ ++ + + +E S AL Sbjct 1792 IDPDRQ-WDELFKTMIRFGDVGLDLDFSAFDASLSPFMIREAGRIMSELSGTPSHFGTAL 1850 Query 1677 IRHVLLMDVYNSTHICGDSVYMMTHSQPSGNPATTPLNCFINSMGLRMVFELCSKKYSAL 1736 I ++ S H+ + Y + S PSG+P T LN IN++ L VF K Sbjct 1851 INTIIY-----SKHLLYNCCYHVCGSMPSGSPCTALLNSIINNINLYYVFSKIFGKSPVF 1905 Query 1737 NGTKCYVMKDFSKHVSIVSYGDDNVINFSDEVSEWFNM----ETITEAFEKLGFTYTDEL 1792 F + + I+ YGDD +I FS +V + N+ + I + F+KLG T T Sbjct 1906 ----------FCQALRILCYGDDVLIVFSRDV-QIDNLDLIGQKIVDEFKKLGMTATSAD 1954 Query 1793 KGKNGEVPKWRTIEDVQYLKRKFRYDSKRKVWEAPLCMDTILEMPNWCRGSLDIQEGTKV 1852 K VP+ + + ++ +LKR F R + TI + W R + + ++ Sbjct 1955 K----NVPQLKPVSELTFLKRSFNLVEDRI--RPAISEKTIWSLIAWQRSNAEFEQ---- 2004 Query 1853 NCENAIMELSMHEEYVFDKWSKVISKAYQK 1882 N ENA MH + K+ + +K Sbjct 2005 NLENAQWFAFMHGYEFYQKFYYFVQSCLEK 2034 >RecName: Full=Genome polyprotein; Contains: RecName: Full=Capsid protein VP0; AltName: Full=VP4-VP2; Contains: RecName: Full=Capsid protein VP4; AltName: Full=P1A; AltName: Full=Virion protein 4; Contains: RecName: Full=Capsid protein VP2; AltName: Full=P1B; AltName: Full=Virion protein 2; Contains: RecName: Full=Capsid protein VP3; AltName: Full=P1C; AltName: Full=Virion protein 3; Contains: RecName: Full=Protein VP1-2A; AltName: Full=VPX; Contains: RecName: Full=Capsid protein VP1; AltName: Full=P1D; AltName: Full=Virion protein 1; Contains: RecName: Full=Assembly signal 2A; AltName: Full=pX; Contains: RecName: Full=Protein 2BC; Contains: RecName: Full=Protein 2B; Short=P2B; Contains: RecName: Full=Protein 2C; Short=P2C; Contains: RecName: Full=Protein 3ABCD; Short=P3; Contains: RecName: Full=Protein 3ABC; Contains: RecName: Full=Protein 3AB; Contains: RecName: Full=Protein 3A; Short=P3A; Contains: RecName: Full=Viral protein genome-linked; Short=VPg; AltName: Full=Protein 3B; Short=P3B; Contains: RecName: Full=Protein 3CD; Contains: RecName: Full=Protease 3C; Short=P3C; AltName: Full=Picornain 3C; Contains: RecName: Full=RNA-directed RNA polymerase 3D-POL; Short=P3D-POL [Human hepatitis A virus Hu/China/H2/1982] Sequence ID: A3FMB2.1 Length: 2227 Range 1: 1840 to 2200 Score:117 bits(293), Expect:8e-25, Method:Compositional matrix adjust., Identities:108/390(28%), Positives:177/390(45%), Gaps:37/390(9%) Query 1501 ISAINRSSSPGFPWIRDRIKGTKGKQGWFGAEGEYI-LDEDVFEAVKTRIQNAKNGVRTP 1559 I AIN SSPGFP++++++ TK W G + + + + + +N Sbjct 1840 IDAINMDSSPGFPYVQEKL--TKRDLIWLDENGLLLGVHPRLAQRILFNTVMMENCSDLD 1897 Query 1560 VMWVDTLKDERRPIEKVDQLKTRVFSNGPMDFSITFRMYYLGFIAHLMENR-ITNEVSIG 1618 V++ KDE RP+EKV + KTR P+D++I RMY+ I++ N V+IG Sbjct 1898 VVFTTCPKDELRPLEKVLESKTRAIDACPLDYTILCRMYWGPAISYFHLNPGFHTGVAIG 1957 Query 1619 TNVYSQDWNKTVRKLKTMGPKVIAGDFSTFDGSLNVCIMEKFADLANEFYDDGSE--NAL 1676 + Q W++ + + G + DFS FD SL+ ++ + + +E S AL Sbjct 1958 IDPDRQ-WDELFKTMIRFGDVGLDLDFSAFDASLSPFMIREAGRIMSELSGTPSHFGTAL 2016 Query 1677 IRHVLLMDVYNSTHICGDSVYMMTHSQPSGNPATTPLNCFINSMGLRMVFELCSKKYSAL 1736 I ++ S H+ + Y + S PSG+P T LN IN++ L VF K Sbjct 2017 INTIIY-----SKHLLYNCCYHVCGSMPSGSPCTALLNSIINNINLYYVFSKIFGKSPVF 2071 Query 1737 NGTKCYVMKDFSKHVSIVSYGDDNVINFSDEVSEWFNM----ETITEAFEKLGFTYTDEL 1792 F + + I+ YGDD +I FS +V + N+ + I + F+KLG T T Sbjct 2072 ----------FCQALRILCYGDDVLIVFSRDV-QIDNLDLIGQKIVDEFKKLGMTATSAD 2120 Query 1793 KGKNGEVPKWRTIEDVQYLKRKFRYDSKRKVWEAPLCMDTILEMPNWCRGSLDIQEGTKV 1852 K VP+ + + ++ +LKR F R + TI + W R + + ++ Sbjct 2121 K----NVPQLKPVSELTFLKRSFNLVEDRI--RPAISEKTIWSLIAWQRSNAEFEQ---- 2170 Query 1853 NCENAIMELSMHEEYVFDKWSKVISKAYQK 1882 N ENA MH + K+ + +K Sbjct 2171 NLENAQWFAFMHGYEFYQKFYYFVQSCLEK 2200 Range 2: 1154 to 1359 Score:72.0 bits(175), Expect:5e-11, Method:Compositional matrix adjust., Identities:59/218(27%), Positives:103/218(47%), Gaps:20/218(9%) Query 476 VYEIQRIE--NMYKKGLEISRNIAELKLPTKLTISFNTHMRYL----TEVFKSVDTSGAF 529 + +IQ +E + Y+KG+++ + + + ++ + H+ L V + + G+ Sbjct 1154 ILQIQDVEKFDQYQKGVDLIQKLRTVHSMAQVDPNLGVHLSPLRDCIARVHQKLKNLGSI 1213 Query 530 GNK--PRTQPIVIWLFGESGRGKSGMTWPLAIDLNNSLLDNVDEMRNFSKNIYMRNVEQE 587 R +P+V +L+G+ G GKS + LA + V+ KNIY + V + Sbjct 1214 NQAMVTRCEPVVCYLYGKRGGGKSLTSIALATKICKHY--GVEP----EKNIYTKPVASD 1267 Query 588 FWDNYQGQNIVCXDDFGQMRDSSSNPNPEFMELIRTANIAPYPLHMAHLEDKRKTKFTSK 647 +WD Y GQ + DD GQ +++ +F +L+ P L+MA LE+K + F+S Sbjct 1268 YWDGYSGQLVCIIDDIGQ--NTTDEDWSDFCQLVSG---CPMRLNMASLEEKGR-HFSSP 1321 Query 648 VIIMTSNVFEQDVNSLTFPDAFRRRVDLCAEVKNKDEF 685 II TSN ++ +A RR+ EVK F Sbjct 1322 FIIATSNWSNPSPKTVYVKEAIDRRLHFKVEVKPASFF 1359 >RecName: Full=Genome polyprotein; Contains: RecName: Full=Capsid protein VP0; AltName: Full=VP4-VP2; Contains: RecName: Full=Capsid protein VP4; AltName: Full=P1A; AltName: Full=Virion protein 4; Contains: RecName: Full=Capsid protein VP2; AltName: Full=P1B; AltName: Full=Virion protein 2; Contains: RecName: Full=Capsid protein VP3; AltName: Full=P1C; AltName: Full=Virion protein 3; Contains: RecName: Full=Protein VP1-2A; AltName: Full=VPX; Contains: RecName: Full=Capsid protein VP1; AltName: Full=P1D; AltName: Full=Virion protein 1; Contains: RecName: Full=Assembly signal 2A; AltName: Full=pX; Contains: RecName: Full=Protein 2BC; Contains: RecName: Full=Protein 2B; Short=P2B; Contains: RecName: Full=Protein 2C; Short=P2C; Contains: RecName: Full=Protein 3ABCD; Short=P3; Contains: RecName: Full=Protein 3ABC; Contains: RecName: Full=Protein 3AB; Contains: RecName: Full=Protein 3A; Short=P3A; Contains: RecName: Full=Viral protein genome-linked; Short=VPg; AltName: Full=Protein 3B; Short=P3B; Contains: RecName: Full=Protein 3CD; Contains: RecName: Full=Protease 3C; Short=P3C; AltName: Full=Picornain 3C; Contains: RecName: Full=RNA-directed RNA polymerase 3D-POL; Short=P3D-POL [Simian hepatitis A virus Cercopithecus/Kenya/AGM-27/1985] Sequence ID: P14553.2 Length: 2230 Range 1: 1843 to 2203 Score:117 bits(293), Expect:9e-25, Method:Compositional matrix adjust., Identities:105/388(27%), Positives:175/388(45%), Gaps:33/388(8%) Query 1501 ISAINRSSSPGFPWIRDRIKGTKGKQGWFGAEGEYI-LDEDVFEAVKTRIQNAKNGVRTP 1559 I AIN SSPGFP++++++ TK W G + + + + + +N Sbjct 1843 IDAINMDSSPGFPYVQEKL--TKKDLIWLDENGLLLGVHPRLAQRILYNTVMMENCSDLD 1900 Query 1560 VMWVDTLKDERRPIEKVDQLKTRVFSNGPMDFSITFRMYYLGFIAHLMEN-RITNEVSIG 1618 V++ KDE RP++KV + KTR P+D++I R+Y+ I++ N V+IG Sbjct 1901 VVFTTCPKDELRPLDKVLESKTRAIDACPLDYTILCRIYWGPAISYFQLNPGFHTGVAIG 1960 Query 1619 TNVYSQDWNKTVRKLKTMGPKVIAGDFSTFDGSLNVCIMEKFADLANEFYDDGSENALIR 1678 + + W++ + + G + DFS+FD SL+ ++ + + +E S Sbjct 1961 IDP-DRHWDELFKTMVRFGDVGLDLDFSSFDASLSPFMIREAGRILSEMSGTPSH---FG 2016 Query 1679 HVLLMDVYNSTHICGDSVYMMTHSQPSGNPATTPLNCFINSMGLRMVFELCSKKYSALNG 1738 L+ + S H+ + Y + S PSG+P T LN +N++ L VF +K Sbjct 2017 EALINTIIYSKHLLYNCCYHVYGSMPSGSPCTALLNSIVNNVNLYYVFSKIFRKSPVF-- 2074 Query 1739 TKCYVMKDFSKHVSIVSYGDDNVINFSDEVSEWFNMET----ITEAFEKLGFTYTDELKG 1794 F + I+ YGDD +I FS V + N+E+ I + F KLG T T K Sbjct 2075 --------FGDALKILCYGDDVLIVFSRNV-QIDNLESIGQKIVDEFGKLGMTATSADK- 2124 Query 1795 KNGEVPKWRTIEDVQYLKRKFRYDSKRKVWEAPLCMDTILEMPNWCRGSLDIQEGTKVNC 1854 VPK + I ++ +LKR F R + TI + W R + + ++ N Sbjct 2125 ---SVPKLKPISELTFLKRSFNLVEDRI--RPAISEKTIWSLVAWQRSNAEFEQ----NL 2175 Query 1855 ENAIMELSMHEEYVFDKWSKVISKAYQK 1882 ENA MH + K+ + +K Sbjct 2176 ENAQWFAFMHGFEFYQKFYHFVQSCLEK 2203 Range 2: 1148 to 1358 Score:72.8 bits(177), Expect:3e-11, Method:Compositional matrix adjust., Identities:64/223(29%), Positives:106/223(47%), Gaps:20/223(8%) Query 466 KSIVENIMKDVYEIQRIEN--MYKKGLEISRNIAELKLPTKLTISFNTHMRYL----TEV 519 K+I E V +IQ +E Y+KG+E+ + + + ++ S +H+ L V Sbjct 1148 KAIEEADQFCVLQIQDVEKSEQYQKGVELIQKLRTVHSLAQVDSSLMSHLSPLRDCIARV 1207 Query 520 FKSVDTSGAFGNK--PRTQPIVIWLFGESGRGKSGMTWPLAIDLNNSLLDNVDEMRNFSK 577 + + G+ R +P+V +L+G+ G GKS + LA + V+ K Sbjct 1208 HQKLKNLGSINQAMVTRCEPVVCYLYGKRGGGKSLTSIALATKICKHY--GVEP----EK 1261 Query 578 NIYMRNVEQEFWDNYQGQNIVCXDDFGQMRDSSSNPNPEFMELIRTANIAPYPLHMAHLE 637 NIY + V ++WD Y GQ + DD GQ +++ +F +L+ P L+MA LE Sbjct 1262 NIYTKPVASDYWDGYSGQLVCIIDDIGQ--NTTDEDWSDFCQLVSG---CPMRLNMASLE 1316 Query 638 DKRKTKFTSKVIIMTSNVFEQDVNSLTFPDAFRRRVDLCAEVK 680 +K + F+S II TSN ++ +A RR+ EVK Sbjct 1317 EKGR-HFSSPFIIATSNWSNPSPKTVYVKEAIDRRLHYKIEVK 1358 >RecName: Full=Genome polyprotein; Contains: RecName: Full=Capsid protein VP0; AltName: Full=VP4-VP2; Contains: RecName: Full=Capsid protein VP4; AltName: Full=P1A; AltName: Full=Virion protein 4; Contains: RecName: Full=Capsid protein VP2; AltName: Full=P1B; AltName: Full=Virion protein 2; Contains: RecName: Full=Capsid protein VP3; AltName: Full=P1C; AltName: Full=Virion protein 3; Contains: RecName: Full=Protein VP1-2A; AltName: Full=VPX; Contains: RecName: Full=Capsid protein VP1; AltName: Full=P1D; AltName: Full=Virion protein 1; Contains: RecName: Full=Assembly signal 2A; AltName: Full=pX; Contains: RecName: Full=Protein 2BC; Contains: RecName: Full=Protein 2B; Short=P2B; Contains: RecName: Full=Protein 2C; Short=P2C; Contains: RecName: Full=Protein 3ABCD; Short=P3; Contains: RecName: Full=Protein 3ABC; Contains: RecName: Full=Protein 3AB; Contains: RecName: Full=Protein 3A; Short=P3A; Contains: RecName: Full=Viral protein genome-linked; Short=VPg; AltName: Full=Protein 3B; Short=P3B; Contains: RecName: Full=Protein 3CD; Contains: RecName: Full=Protease 3C; Short=P3C; AltName: Full=Picornain 3C; Contains: RecName: Full=RNA-directed RNA polymerase 3D-POL; Short=P3D-POL [Human hepatitis A virus Hu/France/CF-53/1979] Sequence ID: Q5Y944.1 Length: 2225 Range 1: 1826 to 2198 Score:116 bits(291), Expect:1e-24, Method:Compositional matrix adjust., Identities:110/405(27%), Positives:184/405(45%), Gaps:40/405(9%) Query 1486 LTYEEAICGNDSSEFISAINRSSSPGFPWIRDRIKGTKGKQGWFGAEGEYI-LDEDVFEA 1544 L + AI G I AIN SSPGFP++++++ TK W G + + + + Sbjct 1826 LDLDMAITGTPG---IDAINMDSSPGFPYVQEKL--TKRDLIWLHENGLLLGIHPRLAQR 1880 Query 1545 VKTRIQNAKNGVRTPVMWVDTLKDERRPIEKVDQLKTRVFSNGPMDFSITFRMYYLGFIA 1604 + +N V++ KDE RP++KV + KTR P+D++I RMY+ I+ Sbjct 1881 ILFNTVMMENCSDLDVVFTTCPKDELRPLDKVLESKTRAIDACPLDYTILCRMYWGPAIS 1940 Query 1605 HLMEN-RITNEVSIGTNVYSQDWNKTVRKLKTMGPKVIAGDFSTFDGSLNVCIMEKFADL 1663 + N V+IG + Q W++ + + G + DFS FD SL+ ++ + + Sbjct 1941 YFHLNPGFHTGVAIGIDPDKQ-WDELFKTMIRFGDVGLDLDFSAFDASLSPFMIREAGRI 1999 Query 1664 ANEFYDDGSE--NALIRHVLLMDVYNSTHICGDSVYMMTHSQPSGNPATTPLNCFINSMG 1721 +E S ALI ++ S H+ + Y + S PSG+P T LN IN++ Sbjct 2000 MSEISGTPSHFGTALINTIIY-----SKHLLYNCCYHVYGSMPSGSPCTALLNSIINNIN 2054 Query 1722 LRMVFELCSKKYSALNGTKCYVMKDFSKHVSIVSYGDDNVINFSDEVSEWFNMETITEA- 1780 L VF +K FS+ V I+ YGDD ++ FS ++ + N++ I + Sbjct 2055 LYYVFAKIFRKSPVF----------FSQAVRILCYGDDVLVVFSRDI-QIDNLDQIGQKI 2103 Query 1781 ---FEKLGFTYTDELKGKNGEVPKWRTIEDVQYLKRKFRYDSKRKVWEAPLCMDTILEMP 1837 F++LG T T K VP+ + + ++ +LKR F R + TI + Sbjct 2104 VHEFKELGMTATSADK----TVPQLKPVSELTFLKRSFNLVEDRI--RPAISEKTIWSLV 2157 Query 1838 NWCRGSLDIQEGTKVNCENAIMELSMHEEYVFDKWSKVISKAYQK 1882 W R + + ++ N ENA MH + K+ + +K Sbjct 2158 AWQRSNAEFEQ----NLENAQWFAFMHGFEFYQKFYYFVQSCLEK 2198 Range 2: 1154 to 1359 Score:69.3 bits(168), Expect:4e-10, Method:Compositional matrix adjust., Identities:58/219(26%), Positives:103/219(47%), Gaps:19/219(8%) Query 473 MKDVYEIQRIENMYKKGLEISRNIAELKLPTKLTISFNTHMRYL----TEVFKSVDTSGA 528 M + ++++ E ++KG+++ + + + ++ S H+ L V + + G+ Sbjct 1154 MLQIQDVEKFEQ-FQKGVDLIQKLRTVHSMAQVDSSLMIHLSPLRDCIARVHQKLKNLGS 1212 Query 529 FGNK--PRTQPIVIWLFGESGRGKSGMTWPLAIDLNNSLLDNVDEMRNFSKNIYMRNVEQ 586 R +P+V +L+G+ G GKS + LA + V+ KNIY + V Sbjct 1213 INQAMVTRCEPVVCYLYGKRGGGKSLTSIALATKICKHY--GVEP----EKNIYTKPVAS 1266 Query 587 EFWDNYQGQNIVCXDDFGQMRDSSSNPNPEFMELIRTANIAPYPLHMAHLEDKRKTKFTS 646 ++WD Y GQ + DD GQ +++ +F +L+ P L+MA LE+K + F+S Sbjct 1267 DYWDGYSGQLVCIIDDIGQ--NTTDEDWSDFCQLVSG---CPMRLNMASLEEKGR-HFSS 1320 Query 647 KVIIMTSNVFEQDVNSLTFPDAFRRRVDLCAEVKNKDEF 685 II TSN ++ +A RR+ EVK F Sbjct 1321 PFIIATSNWSNPSPKTVYVKEAIDRRLHFKIEVKPASFF 1359 >RecName: Full=RNA1 polyprotein; AltName: Full=P1; Contains: RecName: Full=P1A protein; Short=1A; AltName: Full=protease cofactor; Contains: RecName: Full=Putative ATP-dependent helicase; AltName: Full=1B; AltName: Full=NTP-binding protein; Short=NTB; AltName: Full=membrane-binding protein; Contains: RecName: Full=Viral genome-linked protein; AltName: Full=1C-VPg; Contains: RecName: Full=Picornain 3C-like protease; Short=3C-like protease; AltName: Full=1D-PRO; Contains: RecName: Full=RNA-directed RNA polymerase; AltName: Full=1E-POL [Tomato black ring virus (strain MJ)] Sequence ID: Q8B8X3.1 Length: 2266 Range 1: 1580 to 1951 Score:114 bits(284), Expect:1e-23, Method:Compositional matrix adjust., Identities:104/389(27%), Positives:172/389(44%), Gaps:47/389(12%) Query 1508 SSPGFPWIRD-RIKGTKGKQGWF--GAEGEYILDED--VFEAVKTRIQNAKNGVRTPVMW 1562 +SPG+P+ ++ R + KGK +F +G L + E + ++ KN V V+ Sbjct 1580 TSPGYPYFKNNRAEKLKGKHAYFEEAEDGSLQLKKGGMAAELHENLVEFTKNEVPELVV- 1638 Query 1563 VDTLKDERRPIEKVDQLKTRVFSNGPMDFSITFRMYYLGFIAHLMENRITNEVSIGTNVY 1622 ++ KDE P K+ R+F P+ +++ R F L NR +GTN Y Sbjct 1639 IECTKDELLPERKIKVGACRLFEIMPLHYNLFLRQKTCAFTQFLQHNRHRLPCQVGTNPY 1698 Query 1623 SQDWNKTVRKLKTMGPK---VIAGDFSTFDGSLNVCIMEKFADLANEFYDDGSENALI-- 1677 S++W + +L M PK I D+S FDG LN ++E A + N Y E+ + Sbjct 1699 SREWGHMLNRL--MRPKTNEAINCDYSGFDGLLNPQLIECIARMINRLYALSGESDVQQA 1756 Query 1678 -RHVLLMDVYNSTHICGDSVYMMTHSQPSGNPATTPLNCFINSMGLRMVFELCSKKYSAL 1736 R+ +LM + G VY + PSG T +N N + +R ++ K A Sbjct 1757 QRYNMLMALVGRYAFVGQQVYKVNCGLPSGFALTVVVNSVFNEILIRYAYK---KLAPAP 1813 Query 1737 NGTKCYVMKDFSKHVSIVSYGDDNVINFSDEVSEWFNMETITEAFEKLGFTYTDELKGKN 1796 + F V ++ YGDDN+I+ S ++ WF E I + TD G + Sbjct 1814 ERNR------FGSTVCLLVYGDDNLISVSPSIASWFTGEAIRITLAEKKVKITD---GSD 1864 Query 1797 GEVP--KWRTIEDVQYLKRKF-RYDSKRKVWEAPLCMDTILEMPNWC------------- 1840 + P + ++ ++ +LKRKF + D+ + +APL I W Sbjct 1865 KDAPTIEAKSFWELDFLKRKFLKLDN--GIVQAPLDRSAIFSSLYWLTPDKSKFHESQKP 1922 Query 1841 ---RGSLDIQEGTKVNCENAIMELSMHEE 1866 +G +D+ E +N A+MEL +H + Sbjct 1923 SDFQGEVDVIEELLLNVNVALMELYLHND 1951 >RecName: Full=RNA1 polyprotein; Contains: RecName: Full=Protease-cofactor; Contains: RecName: Full=Putative helicase; Contains: RecName: Full=Picornain 3C-like protease; Short=3C-like protease; Contains: RecName: Full=RNA-directed RNA polymerase [Tomato torrado virus ESP/PRIToTV0301] Sequence ID: A1XIP9.1 Length: 2158 Range 1: 311 to 527 Score:90.1 bits(222), Expect:2e-16, Method:Compositional matrix adjust., Identities:65/227(29%), Positives:108/227(47%), Gaps:11/227(4%) Query 460 DGELDSKSIVENIMKDVYEIQRIENMYKKGLEISRNIAELKLPTKLTISFNTHMRYLTEV 519 D D +EN + I +++++ ++ L+IS IA + ++ + +L ++ Sbjct 311 DAVCDPAHRLENFANPAFTI-KLQHLREQALKISAYIATHPVAAFMSHRVTAAIXHLDKI 369 Query 520 FKSVDTSGAFGNKPRTQPIVIWLFGESGRGKSGMTWPLAIDLNNSLLDNVDEMRNFSKNI 579 + G R +P ++ +G SG GKS + L I N +LD ++E + + Sbjct 370 YGENCQHTGVGQY-RAEPFMVQWYGASGCGKS-TSMRLFI---NDVLDRMEEPK--LNRL 422 Query 580 YMRNVEQEFWDNYQGQNIVCXDDFGQMRDSSSNPNPEFMELIRTANIAPYPLHMAHLEDK 639 Y + +W NY Q + DD G +RD + + +LI + P PL MA +EDK Sbjct 423 YAVSKRDAYWSNYAHQTAILMDDMGALRDGAGQCQ-DIKDLIDIKSTQPAPLPMAAVEDK 481 Query 640 RKTKFTSKVIIMTSNVFEQDVN-SLTFPDAFRRRVDLCAEVKNKDEF 685 + FTS+ I TSN+ LT+PDAF RR D+ E + EF Sbjct 482 GR-HFTSRYIFATSNLISAPAQCGLTYPDAFERRRDVLVECRKVGEF 527 >RecName: Full=Genome polyprotein; Contains: RecName: Full=Capsid protein VP0; AltName: Full=VP4-VP2; Contains: RecName: Full=Capsid protein VP4; AltName: Full=P1A; AltName: Full=Virion protein 4; Contains: RecName: Full=Capsid protein VP2; AltName: Full=P1B; AltName: Full=Virion protein 2; Contains: RecName: Full=Capsid protein VP3; AltName: Full=P1C; AltName: Full=Virion protein 3; Contains: RecName: Full=Capsid protein VP1; AltName: Full=P1D; AltName: Full=Virion protein 1; Contains: RecName: Full=Protein 2A; Short=P2A; Contains: RecName: Full=Protein 2B; Short=P2B; Contains: RecName: Full=Protein 2C; Short=P2C; Contains: RecName: Full=Protein 3A; Short=P3A; Contains: RecName: Full=Protein 3B; Short=P3B; AltName: Full=VPg; Contains: RecName: Full=Protease 3C; Short=P3C; AltName: Full=Picornain 3C; Contains: RecName: Full=RNA-directed RNA polymerase 3D-POL; Short=P3D-POL [Avian encephalomyelitis virus strain Calnek] Sequence ID: Q9YLS4.1 Length: 2134 Range 1: 1020 to 1324 Score:80.9 bits(198), Expect:1e-13, Method:Compositional matrix adjust., Identities:87/338(26%), Positives:153/338(45%), Gaps:46/338(13%) Query 400 AKGCSDLNVVLNQAITNHMLEHFGKNVLGLKQEDELKVLVEGYRNWCDEVRDLVG-HKIN 458 A+G S++N VL+ A KN +D +K+L+E + C + + G H Sbjct 1020 AQGLSEINQVLSIA----------KNA-----KDVIKMLIEIF---CKVIERITGEHGKK 1061 Query 459 SDGELDSKSIVENIMKDVYEIQRIENMYKKGLEISRNIAELKLPTKLTISFNTHMRYLTE 518 D K + N+++ + + + +G+E + + ++ + S L Sbjct 1062 IQWAQDKKEEIMNVLERAEKWITTSDDHSEGIECLKLVRSIQSVIRGEESLKELAGELRA 1121 Query 519 VFKSVDTSGAFGNKP------RTQPIVIWLFGESGRGKSGMTWPLAIDLNNSL-LDNVDE 571 V V +KP R +P V++L+G G GKS + +A+ L L + +V+ Sbjct 1122 VGTHVLNKLGRLDKPNAPILVRAEPTVLYLYGNRGGGKSLASMAIAVKLCKELGISHVE- 1180 Query 572 MRNFSKNIYMRNVEQEFWDNYQGQNIVCXDDFGQMRDSSSNPNPEFMELIRTANIAPYPL 631 IY + + +FWD Y GQ +V DD GQ S + ++ + + P L Sbjct 1181 ------GIYTKPIMSDFWDGYAGQPVVIMDDLGQ-----STSDEDWTNFCQLVSSCPLRL 1229 Query 632 HMAHLEDKRKTKFTSKVIIMTSNVFEQDVNSLTFPDAFRRRVDLCAEVKNKDEFTK---- 687 +MA+LE K+ T+F S II +SN+ ++ DA RR+ + +V K+EF+ Sbjct 1230 NMANLE-KKGTQFNSPFIIASSNLSHPCPKTVYCTDAIARRLHIKVKVSPKEEFSTHAML 1288 Query 688 -MCWSKSAGKMVQRLDKGKVKKITGDIHSTVPYIVDLI 724 + +K AG LD +KI+ D+ ST + D++ Sbjct 1289 DVAKAKKAGAYCN-LDCLDFQKIS-DLASTPVSVQDIV 1324 >RecName: Full=Genome polyprotein; Contains: RecName: Full=Capsid protein VP0; AltName: Full=VP4-VP2; Contains: RecName: Full=Capsid protein VP4; AltName: Full=P1A; AltName: Full=Virion protein 4; Contains: RecName: Full=Capsid protein VP2; AltName: Full=P1B; AltName: Full=Virion protein 2; Contains: RecName: Full=Capsid protein VP3; AltName: Full=P1C; AltName: Full=Virion protein 3; Contains: RecName: Full=Capsid protein VP1; AltName: Full=P1D; AltName: Full=Virion protein 1; Contains: RecName: Full=Protein 2A; Short=P2A; Contains: RecName: Full=Protein 2B; Short=P2B; Contains: RecName: Full=Protein 2C; Short=P2C; Contains: RecName: Full=Protein 3A; Short=P3A; Contains: RecName: Full=Protein 3B; Short=P3B; AltName: Full=VPg; Contains: RecName: Full=Protease 3C; Short=P3C; AltName: Full=Picornain 3C; Contains: RecName: Full=RNA-directed RNA polymerase 3D-POL; Short=P3D-POL [Avian encephalomyelitis virus strain L2Z] Sequence ID: Q6WQ42.1 Length: 2134 Range 1: 1020 to 1324 Score:80.5 bits(197), Expect:1e-13, Method:Compositional matrix adjust., Identities:87/338(26%), Positives:153/338(45%), Gaps:46/338(13%) Query 400 AKGCSDLNVVLNQAITNHMLEHFGKNVLGLKQEDELKVLVEGYRNWCDEVRDLVG-HKIN 458 A+G S++N VL+ A KN +D +K+L+E + C + + G H Sbjct 1020 AQGLSEINQVLSIA----------KNA-----KDVIKMLIEIF---CKVIERITGEHGKK 1061 Query 459 SDGELDSKSIVENIMKDVYEIQRIENMYKKGLEISRNIAELKLPTKLTISFNTHMRYLTE 518 D K + N+++ + + + +G+E + + ++ + S L Sbjct 1062 IQWAQDKKEEIMNVLERAEKWITTSDDHSEGIECLKLVRSIQSVIRGEESLKELAGELRA 1121 Query 519 VFKSVDTSGAFGNKP------RTQPIVIWLFGESGRGKSGMTWPLAIDLNNSL-LDNVDE 571 V V +KP R +P V++L+G G GKS + +A+ L L + +V+ Sbjct 1122 VGTHVLNKLGRLDKPNAPILVRAEPTVLYLYGNRGGGKSLASMAIAVKLCKELGISHVE- 1180 Query 572 MRNFSKNIYMRNVEQEFWDNYQGQNIVCXDDFGQMRDSSSNPNPEFMELIRTANIAPYPL 631 IY + + +FWD Y GQ +V DD GQ S + ++ + + P L Sbjct 1181 ------GIYTKPIMSDFWDGYAGQPVVIMDDLGQ-----STSDEDWTNFCQLVSSCPLRL 1229 Query 632 HMAHLEDKRKTKFTSKVIIMTSNVFEQDVNSLTFPDAFRRRVDLCAEVKNKDEFTK---- 687 +MA+LE K+ T+F S II +SN+ ++ DA RR+ + +V K+EF+ Sbjct 1230 NMANLE-KKGTQFNSPFIIASSNLSHPCPKTVYCTDAIARRLHIKVKVSPKEEFSTHAML 1288 Query 688 -MCWSKSAGKMVQRLDKGKVKKITGDIHSTVPYIVDLI 724 + +K AG LD +KI+ D+ ST + D++ Sbjct 1289 DVAKAKKAGAYCN-LDCLDFQKIS-DLASTPVSVQDIV 1324 >RecName: Full=Genome polyprotein; Contains: RecName: Full=Capsid protein VP0; AltName: Full=VP4-VP2; Contains: RecName: Full=Capsid protein VP4; AltName: Full=P1A; AltName: Full=Virion protein 4; Contains: RecName: Full=Capsid protein VP2; AltName: Full=P1B; AltName: Full=Virion protein 2; Contains: RecName: Full=Capsid protein VP3; AltName: Full=P1C; AltName: Full=Virion protein 3; Contains: RecName: Full=Capsid protein VP1; AltName: Full=P1D; AltName: Full=Virion protein 1; Contains: RecName: Full=Protein 2A; Short=P2A; Contains: RecName: Full=Protein 2B; Short=P2B; Contains: RecName: Full=Protein 2C; Short=P2C; Contains: RecName: Full=Protein 3A; Short=P3A; Contains: RecName: Full=Protein 3B; Short=P3B; AltName: Full=VPg; Contains: RecName: Full=Protease 3C; Short=P3C; AltName: Full=Picornain 3C; Contains: RecName: Full=RNA-directed RNA polymerase 3D-POL; Short=P3D-POL [Avian encephalomyelitis virus strain Van Reokel] Sequence ID: Q6R325.1 Length: 2134 Range 1: 1020 to 1296 Score:80.1 bits(196), Expect:2e-13, Method:Compositional matrix adjust., Identities:81/318(25%), Positives:140/318(44%), Gaps:49/318(15%) Query 400 AKGCSDLNVVLNQAITNHMLEHFGKNVLGLKQEDELKVLVEGYRNWCDEVRDLVG-HKIN 458 A+G S++N VL+ A KN +D +K+L+E + C + + G H Sbjct 1020 AQGLSEINQVLSIA----------KNA-----KDVIKMLIEIF---CKVIERITGEHGKK 1061 Query 459 SDGELDSKSIVENIMKDVYEIQRIENMYKKGLEISRNIAELKLPTKLTISFNTHMRYLTE 518 D K + N+++ + + + +G+E + + ++ + S L Sbjct 1062 IQWAQDKKEEIMNVLERAEKWITTSDDHSEGIECLKLVRSIQSVIRGEESLKELAGELRA 1121 Query 519 VFKSVDTSGAFGNKP------RTQPIVIWLFGESGRGKSGMTWPLAIDLNNSL-LDNVDE 571 V V +KP R +P V++L+G G GKS + +A+ L L + +V+ Sbjct 1122 VGTHVLNKLGRLDKPNAPILVRAEPTVLYLYGNRGGGKSLASMAIAVKLCKELGISHVE- 1180 Query 572 MRNFSKNIYMRNVEQEFWDNYQGQNIVCXDDFGQMRDSSSNPNPEFMELIRTANIAPYPL 631 IY + + +FWD Y GQ +V DD GQ S + ++ + + P L Sbjct 1181 ------GIYTKPIMSDFWDGYAGQPVVIMDDLGQ-----STSDEDWTNFCQLVSSCPLRL 1229 Query 632 HMAHLEDKRKTKFTSKVIIMTSNVFEQDVNSLTFPDAFRRRVDLCAEVKNKDEFTKMCWS 691 +MA+LE K+ T+F S II +SN+ ++ DA RR+ + +V K+EF+ Sbjct 1230 NMANLE-KKGTQFNSPFIIASSNLSHPCPKTVYCTDAIARRLHIKVKVSPKEEFSTHA-- 1286 Query 692 KSAGKMVQRLDKGKVKKI 709 LD K KK+ Sbjct 1287 --------MLDVAKAKKV 1296 >RecName: Full=Genome polyprotein; Contains: RecName: Full=Capsid protein VP0; AltName: Full=VP4-VP2; Contains: RecName: Full=Capsid protein VP4; AltName: Full=P1A; AltName: Full=Rho; AltName: Full=Virion protein 4; Contains: RecName: Full=Capsid protein VP2; AltName: Full=Beta; AltName: Full=P1B; AltName: Full=Virion protein 2; Contains: RecName: Full=Capsid protein VP3; AltName: Full=Gamma; AltName: Full=P1C; AltName: Full=Virion protein 3; Contains: RecName: Full=Capsid protein VP1; AltName: Full=Alpha; AltName: Full=P1D; AltName: Full=Virion protein 1; Contains: RecName: Full=Protein 2A; Short=P2A; AltName: Full=G; Contains: RecName: Full=Protein 2B; Short=I; Short=P2B; Contains: RecName: Full=Protein 2C; Short=C; Short=P2C; Contains: RecName: Full=Protein 3A; Short=P3A; Contains: RecName: Full=VPg; Short=P3B; AltName: Full=H; AltName: Full=Protein 3B; Contains: RecName: Full=Protease 3C; Short=P3C; AltName: Full=Picornain 3C; AltName: Full=p22; Contains: RecName: Full=RNA-directed RNA polymerase; Short=RdRp; AltName: Full=3D polymerase; Short=3Dpol; AltName: Full=Protein 3D; Short=3D [Cosavirus A isolate Human/Pakistan/0553/-] Sequence ID: B8XTP8.1 Length: 2124 Range 1: 1733 to 2076 Score:70.1 bits(170), Expect:2e-10, Method:Compositional matrix adjust., Identities:101/394(26%), Positives:165/394(41%), Gaps:62/394(15%) Query 1464 EEAFQLVKSVWLKGMRNELKKVLTYEEAICGNDSSEFISAINR---SSSPGFPWIRDRIK 1520 A + ++ + R L+ E+AI G I ++R +++ G P+ + R + Sbjct 1733 RSALDMAAEIYGEKFRGNDFSPLSVEDAILG------IPGLDRLDPNTASGLPYTKTRRQ 1786 Query 1521 GTKGKQGWFGAEGEYILDEDVFEAVKTRIQNAKNGVRTP--VMWVDTLKDERRPIEKVDQ 1578 G ILD+ +K R+ G R P V + LKDE RPIEKV Sbjct 1787 MIDFNTGQ-------ILDD----TLKCRLGQWLAG-RPPQEVHYQTFLKDEIRPIEKVKA 1834 Query 1579 LKTRVFSNGPMDFSITFRMYYLGFIAHLMEN-RITNEVSIGTNVYSQDWNKTVRKLKTMG 1637 KTR+ P+D I FRM + FIAH N +IG + W +L Sbjct 1835 GKTRIIDVPPLDHVIAFRMLFGRFIAHYHLNFGFKTGSAIGCDP-DVAWASFGFELSGF- 1892 Query 1638 PKVIAGDFSTFDGSLNVCIMEKFADLANEFYDDGSENALIRHVLLMDVYNSTHICGDSVY 1697 P + D+S FD S + I E L +F+ +LL + STH + Sbjct 1893 PYLYDFDYSNFDASHSTSIFEI---LEQKFFSPELGFDPRCSLLLKSLAVSTHCYENKRL 1949 Query 1698 MMTHSQPSGNPATTPLNCFINSMGLRMVFELCSKKYSALNGTKCYVMKDFSKHVSIVSYG 1757 + PSG T+ LN IN+ ++F + AL T +D +S+++YG Sbjct 1950 QIAGGLPSGTAGTSVLNTVINN----IIF------HGALYHTYTNFERD---DISMLAYG 1996 Query 1758 DDNVINFSDEVSEWFNMETITEAFEKLGFTYT-----DELKGKNGEVPKWRTIEDVQYLK 1812 DD V+ E+ ++ + ++G+ T DE + K ++D+ +LK Sbjct 1997 DDIVVASKFEL----DLVMVKAFMNRIGYKITPADKSDEFRPK--------CMDDICFLK 2044 Query 1813 RKFRYDSKRKVWEAPLCMDTILEMPNWCR-GSLD 1845 R+F VW + + + M +W + G+L+ Sbjct 2045 RRFV--KVAGVWAPVMETENLEAMLSWYKPGTLN 2076 >RecName: Full=Genome polyprotein; Contains: RecName: Full=Leader protein; Short=L; Contains: RecName: Full=Capsid protein VP0; Contains: RecName: Full=Capsid protein VP3; AltName: Full=P1C; AltName: Full=Virion protein 3; Contains: RecName: Full=Capsid protein VP1; AltName: Full=P1D; AltName: Full=Virion protein 1; Contains: RecName: Full=Protein 2A; Short=P2A; Contains: RecName: Full=Protein 2B; Short=P2B; Contains: RecName: Full=Protein 2C; Short=P2C; Contains: RecName: Full=Protein 3A; Short=P3A; Contains: RecName: Full=VPg; Short=P3B; AltName: Full=Protein 3B; Contains: RecName: Full=Protein 3CD; Contains: RecName: Full=Protease 3C; AltName: Full=Picornain 3C; Short=P3C; Contains: RecName: Full=RNA-directed RNA polymerase; Short=RdRp; AltName: Full=3D polymerase; Short=3Dpol; AltName: Full=Protein 3D; Short=3D [Human klassevirus 1] Sequence ID: C6KEF6.1 Length: 2370 Range 1: 1847 to 2280 Score:68.9 bits(167), Expect:4e-10, Method:Compositional matrix adjust., Identities:120/526(23%), Positives:191/526(36%), Gaps:102/526(19%) Query 1303 GDCGAPLVINETQVIRKIAGIHVAGDARGKAYAESISQKDLIRAFSKIDVSMQIQLDLDQ 1362 G CG+P++ + + I GIHVAG A ++ ++ + ++AF Sbjct 1847 GLCGSPMIATDPGGL-GILGIHVAGVAGYNGFSARLT-PERVQAFLS------------- 1891 Query 1363 TLNFNQQQXIIPPNAEFGPEDLDFCDLPSLKMIPVGRLSEPLFEPGKTDIRPSLVYGKIS 1422 N Q ++ F P M P +S ++ + PS +G Sbjct 1892 --NLATPQSVL----HFHP-----------PMGPPAHVSR------RSRLHPSPAFGAFP 1928 Query 1423 EIKTKPAILRN--VIVDG----KIVNIKHKNLKKCAMDTPYVSKEMTEEAFQLVKSVWLK 1476 K A+ R + +G I KH K + TP+ E + W Sbjct 1929 ITKEPAALSRKDPRLPEGTDLDAITLAKHD---KGDIATPWPCMEEAAD--------WYF 1977 Query 1477 GMRNELKKVLTYEEAICGNDSSEFISAINRSSSPGFPWIRDRIKGTKGKQGWFGAEGEYI 1536 + VL+ E+AI G D + AI+ S SPG+PW T+G+ + Sbjct 1978 SQLPDSLPVLSQEDAIRGLD---HMDAIDLSQSPGYPWT------TQGR------SRRSL 2022 Query 1537 LDED--VFEAVKTRIQNAKNGVRTPVMWVDTLKDERRPIEKVDQLKTRVFSNGPMDFSIT 1594 DED ++ I + +G ++ LKDE RP K KTR+ P+ + Sbjct 2023 FDEDGNPVPELQKAIDSVWDGGS--YIYQSFLKDELRPTAKARAGKTRIVEAAPIQAIVV 2080 Query 1595 FRMYYLGFIAHLMENRITNEVSIGTNVYSQDWNKTVRKLKTMGPKVIAGDFSTFDGSLNV 1654 R I HL N + ++G N W + L V + D+S FD ++ Sbjct 2081 GRRLLGSLINHLQGNPLQYGSAVGCNP-DIHWTQIFHSLTPFS-NVWSIDYSCFDATIPS 2138 Query 1655 CIMEKFADLANEFYDDGSENALIRHVLLMDVYNST--HICGDSVYMMTHSQPSGNPATTP 1712 ++ A D VL Y +T H+ Y M PSG T+ Sbjct 2139 VLLSAIASRIASRSDQPGR------VLDYLSYTTTSYHVYDSLWYTMVGGNPSGCVGTSI 2192 Query 1713 LNCFINSMGLRMVFELCSKKYSALNGTKCYVMKDFSKHVSIVSYGDDNVINFSDEVSEWF 1772 LN N++ + C+K D + YGDD +I S++ Sbjct 2193 LNTIANNIAIISAMMYCNK-------------FDPRDPPVLYCYGDD-LIWGSNQDFHPR 2238 Query 1773 NMETITEAFEKLGFTYTDELKGKNGEVPKWRTIEDVQYLKRKFRYD 1818 ++ + F T D K + P +I D+ +LKR F D Sbjct 2239 ELQAFYQKFTNFVVTPAD----KASDFPDSSSIYDITFLKRYFVPD 2280 Range 2: 1222 to 1511 Score:60.5 bits(145), Expect:2e-07, Method:Compositional matrix adjust., Identities:75/326(23%), Positives:145/326(44%), Gaps:49/326(15%) Query 371 LSVVFHKKFTYKKLGIEAMIKRLGDLGRAAKGCSDLNVVLNQAITN------HMLEHFGK 424 L+ VF++ + LG+ + +G D N +++ A+ N ++ H K Sbjct 1222 LAAVFYR--CARALGLSPTPQSAAQAAGGRQGVRDYNDIMS-ALRNTDWFFEKIMSHI-K 1277 Query 425 NVLG----LKQEDELKVLVEGYRNWCDEVRDLVGHKINSDGELDSKSIVENIMKDVYEIQ 480 N+L L ++D L + + D V EL + +I N+ Sbjct 1278 NLLEWLGVLVKDDPRTKLNSQHEKILELYTDSVTASSTPPSELSADAIRSNL-------- 1329 Query 481 RIENMYKKGLEISR---NIAELKLPTKLTISFNTHMRYLTEVFKSVDTSGAFGNKPRTQP 537 ++ K+ L +S ++ ++L T+ +++T + ++ V G G +P +P Sbjct 1330 ---DLAKQLLTLSHAANSVTHIQLCTRAITNYSTALSAISLV-------GTPGTRP--EP 1377 Query 538 IVIWLFGESGRGKSGMTWPLAIDLNNSLLDNVDEMRNFSKNIYMRNVEQEFWDNYQGQNI 597 +V++L+G G GKS + LA L +L + + + S + + +F+D Y GQ + Sbjct 1378 LVVYLYGPPGTGKSLLASLLASTLAQALSGDPNNYYSPS------SPDCKFYDGYSGQPV 1431 Query 598 VCXDDFGQMRDSSSNPNPEFMELIRTANIAPYPLHMAHLEDKRKTKFTSKVIIMTSNVFE 657 DD GQ D + ++ + + + AP+ + MA + DK + +TS+V+I+TSN Sbjct 1432 HYIDDIGQDPDGA-----DWADFVNIVSSAPFIVPMADVNDKGRF-YTSRVVIVTSNFPG 1485 Query 658 QDVNSLTFPDAFRRRVDLCAEVKNKD 683 + S A RR+ + V +D Sbjct 1486 PNPRSARCVAALERRLHIRLNVTARD 1511 >RecName: Full=Genome polyprotein; Contains: RecName: Full=Leader protein; Short=L; Contains: RecName: Full=Capsid protein VP0; Contains: RecName: Full=Capsid protein VP3; AltName: Full=P1C; AltName: Full=Virion protein 3; Contains: RecName: Full=Capsid protein VP1; AltName: Full=P1D; AltName: Full=Virion protein 1; Contains: RecName: Full=Protein 2A; Short=P2A; Contains: RecName: Full=Protein 2B; Short=P2B; Contains: RecName: Full=Protein 2C; Short=P2C; Contains: RecName: Full=Protein 3A; Short=P3A; Contains: RecName: Full=VPg; Short=P3B; AltName: Full=Protein 3B; Contains: RecName: Full=Protein 3CD; Contains: RecName: Full=Protease 3C; AltName: Full=Picornain 3C; Short=P3C; Contains: RecName: Full=RNA-directed RNA polymerase; Short=RdRp; AltName: Full=3D polymerase; Short=3Dpol; AltName: Full=Protein 3D; Short=3D [Salivirus NG-J1] Sequence ID: C5MSH2.2 Length: 2374 Range 1: 1989 to 2284 Score:64.7 bits(156), Expect:9e-09, Method:Compositional matrix adjust., Identities:84/339(25%), Positives:131/339(38%), Gaps:47/339(13%) Query 1484 KVLTYEEAICGNDSSEFISAINRSSSPGFPWIRDRIKGTKGKQGWFGAEGEYILDED--V 1541 VL+ E+AI G D + AI+ S SPG+PW T+G+ + DED Sbjct 1989 PVLSQEDAIRGLD---HMDAIDLSQSPGYPWT------TQGR------SRRSLFDEDGNP 2033 Query 1542 FEAVKTRIQNAKNGVRTPVMWVDTLKDERRPIEKVDQLKTRVFSNGPMDFSITFRMYYLG 1601 ++ I + +G ++ LKDE RP K KTR+ P+ + R Sbjct 2034 LPELQEAIDSVWDGGS--YIYQSFLKDELRPTAKARAGKTRIVEAAPIQAIVVGRRLLGS 2091 Query 1602 FIAHLMENRITNEVSIGTNVYSQDWNKTVRKLKTMGPKVIAGDFSTFDGSLNVCIMEKFA 1661 I HL N + + ++G N W + L + V + D+S FD ++ ++ A Sbjct 2092 LINHLQGNPLQHGSAVGCNP-DIHWTQIFHSLTSFS-NVWSIDYSCFDATIPSVLLSAIA 2149 Query 1662 DLANEFYDDGSENALIRHVLLMDVYNST--HICGDSVYMMTHSQPSGNPATTPLNCFINS 1719 D VL Y +T H+ Y M PSG T+ LN N+ Sbjct 2150 SRIAARSDQPGR------VLDYLSYTTTSYHVYDSLWYTMIGGNPSGCVGTSILNTIANN 2203 Query 1720 MGLRMVFELCSKKYSALNGTKCYVMKDFSKHVSIVSYGDDNVINFSDEVSEWFNMETITE 1779 + + C+K D + YGDD +I S++ ++ + Sbjct 2204 IAVISAMMYCNK-------------FDPRDPPVLYCYGDD-LIWGSNQDFHPRELQAFYQ 2249 Query 1780 AFEKLGFTYTDELKGKNGEVPKWRTIEDVQYLKRKFRYD 1818 F T D K + P +I D+ +LKR F D Sbjct 2250 KFTNFVVTPAD----KASDFPDSSSIFDITFLKRYFVPD 2284 Range 2: 1225 to 1514 Score:61.6 bits(148), Expect:8e-08, Method:Compositional matrix adjust., Identities:76/326(23%), Positives:148/326(45%), Gaps:49/326(15%) Query 371 LSVVFHKKFTYKKLGIEAMIKRLGDLGRAAKGCSDLNVVLNQAITN------HMLEHFGK 424 L+ VF++ + LG+ + +G D N +++ A+ N ++ H K Sbjct 1225 LAAVFYR--CARALGLSPTPQSAAQAAGGRQGVRDYNDIMS-ALRNTDWFFEKIMTHI-K 1280 Query 425 NVL---GLKQEDELKVLVEGYRNWCDEV-RDLVGHKINSDGELDSKSIVENIMKDVYEIQ 480 N+L G+ +D+ + + G E+ D V EL + +I N+ Sbjct 1281 NLLEWLGVLVKDDPRTKLNGQHEKILELYTDSVTASSTPPSELSADAIRSNL-------- 1332 Query 481 RIENMYKKGLEISR---NIAELKLPTKLTISFNTHMRYLTEVFKSVDTSGAFGNKPRTQP 537 ++ K+ L +S ++ ++L T+ +++T + ++ V G G +P +P Sbjct 1333 ---DLAKQLLTLSHAANSVTHIQLCTRAITNYSTALSAISLV-------GTPGTRP--EP 1380 Query 538 IVIWLFGESGRGKSGMTWPLAIDLNNSLLDNVDEMRNFSKNIYMRNVEQEFWDNYQGQNI 597 +V++L+G G GKS + LA L +L + + + S + + +F+D Y GQ + Sbjct 1381 LVVYLYGPPGTGKSLLASLLASTLAQALSGDPNNYYSPS------SPDCKFYDGYSGQPV 1434 Query 598 VCXDDFGQMRDSSSNPNPEFMELIRTANIAPYPLHMAHLEDKRKTKFTSKVIIMTSNVFE 657 DD GQ D + ++ + + + AP+ + MA + DK + +TS+V+I+TSN Sbjct 1435 HYIDDIGQDPDGA-----DWADFVNIVSSAPFIVPMADVNDKGRF-YTSRVVIVTSNFPG 1488 Query 658 QDVNSLTFPDAFRRRVDLCAEVKNKD 683 + S A RR+ + V +D Sbjct 1489 PNPRSARCVAALERRLHIRLNVTARD 1514 >RecName: Full=Genome polyprotein; Contains: RecName: Full=Leader protein; Short=L; Contains: RecName: Full=Capsid protein VP0; AltName: Full=VP4-VP2; Contains: RecName: Full=Capsid protein VP4; AltName: Full=P1A; AltName: Full=Rho; AltName: Full=Virion protein 4; Contains: RecName: Full=Capsid protein VP2; AltName: Full=Beta; AltName: Full=P1B; AltName: Full=Virion protein 2; Contains: RecName: Full=Capsid protein VP3; AltName: Full=Gamma; AltName: Full=P1C; AltName: Full=Virion protein 3; Contains: RecName: Full=Capsid protein VP1; AltName: Full=Alpha; AltName: Full=P1D; AltName: Full=Virion protein 1; Contains: RecName: Full=Protein 2A; Short=P2A; AltName: Full=G; Contains: RecName: Full=Protein 2B; Short=I; Short=P2B; Contains: RecName: Full=Protein 2C; Short=C; Short=P2C; Contains: RecName: Full=Protein 3A; Short=P3A; Contains: RecName: Full=VPg; Short=P3B; AltName: Full=H; AltName: Full=Protein 3B; Contains: RecName: Full=Protease 3C; Short=P3C; AltName: Full=Picornain 3C; AltName: Full=p22; Contains: RecName: Full=RNA-directed RNA polymerase; Short=RdRp; AltName: Full=3D polymerase; Short=3Dpol; AltName: Full=E; AltName: Full=Protein 3D; Short=3D; Flags: Precursor [Mengo virus] Sequence ID: P12296.3 Length: 2293 Range 1: 1304 to 1462 Score:62.4 bits(150), Expect:4e-08, Method:Compositional matrix adjust., Identities:50/179(28%), Positives:87/179(48%), Gaps:20/179(11%) Query 534 RTQPIVIWLFGESGRGKSGMTWPLAIDLNNSLLDNVDEMRNFSKNIYMRNVEQEFWDNYQ 593 R +P+VI L G++G+GKS + +A ++ ++ +++Y + +F+D Y+ Sbjct 1304 RCEPVVIVLRGDAGQGKSLSSQIIAQAVSKTIFGR--------QSVYSLPPDSDFFDGYE 1355 Query 594 GQNIVCXDDFGQMRDSSSNPNPEFMELIRTANIAPYPLHMAHLEDKRKTKFTSKVIIMTS 653 Q DD GQ D S F +++ T N+ P +MA LE ++ T FTS++++ T+ Sbjct 1356 NQFAAIMDDLGQNPDGSDFTT--FCQMVSTTNLLP---NMASLE-RKGTPFTSQLVVATT 1409 Query 654 NVFEQDVNSLTFPDAFRRRVDLCAEVKNKDEFTKMCWSKSAGKMVQRLDKGKVKKITGD 712 N+ E ++ A RR+ V +C AG V LD + + TGD Sbjct 1410 NLPEFRPVTIAHYPAVERRITFDYSVSAG----PVCSKTEAGCKV--LDVERAFRPTGD 1462 >RecName: Full=Genome polyprotein; Contains: RecName: Full=Leader protein; Short=L; Contains: RecName: Full=Capsid protein VP0; AltName: Full=VP4-VP2; Contains: RecName: Full=Capsid protein VP4; AltName: Full=P1A; AltName: Full=Rho; AltName: Full=Virion protein 4; Contains: RecName: Full=Capsid protein VP2; AltName: Full=Beta; AltName: Full=P1B; AltName: Full=Virion protein 2; Contains: RecName: Full=Capsid protein VP3; AltName: Full=Gamma; AltName: Full=P1C; AltName: Full=Virion protein 3; Contains: RecName: Full=Capsid protein VP1; AltName: Full=Alpha; AltName: Full=P1D; AltName: Full=Virion protein 1; Contains: RecName: Full=Protein 2A; Short=P2A; AltName: Full=G; Contains: RecName: Full=Protein 2B; Short=I; Short=P2B; Contains: RecName: Full=Protein 2C; Short=C; Short=P2C; Contains: RecName: Full=Protein 3A; Short=P3A; Contains: RecName: Full=VPg; Short=P3B; AltName: Full=H; AltName: Full=Protein 3B; Contains: RecName: Full=Protease 3C; Short=P3C; AltName: Full=Picornain 3C; AltName: Full=p22; Contains: RecName: Full=RNA-directed RNA polymerase; Short=RdRp; AltName: Full=3D polymerase; Short=3Dpol; AltName: Full=E; AltName: Full=Protein 3D; Short=3D; Flags: Precursor [Encephalomyocarditis virus strain emc-d diabetogenic] Sequence ID: P17594.2 Length: 2292 Range 1: 1303 to 1461 Score:62.0 bits(149), Expect:6e-08, Method:Compositional matrix adjust., Identities:50/179(28%), Positives:85/179(47%), Gaps:20/179(11%) Query 534 RTQPIVIWLFGESGRGKSGMTWPLAIDLNNSLLDNVDEMRNFSKNIYMRNVEQEFWDNYQ 593 R +P+VI L G++G+GKS + +A ++ ++ +++Y + +F+D Y+ Sbjct 1303 RCEPVVIVLRGDAGQGKSLSSQVIAQAVSKTIFGR--------QSVYSLPPDSDFFDGYE 1354 Query 594 GQNIVCXDDFGQMRDSSSNPNPEFMELIRTANIAPYPLHMAHLEDKRKTKFTSKVIIMTS 653 Q DD GQ D S F +++ T N P +MA LE + T FTS++++ T+ Sbjct 1355 NQFAAIMDDLGQNPDGSDFTT--FCQMVSTTNFLP---NMASLE-RNGTPFTSQIVVATT 1408 Query 654 NVFEQDVNSLTFPDAFRRRVDLCAEVKNKDEFTKMCWSKSAGKMVQRLDKGKVKKITGD 712 N+ E ++ A RR+ V +C AG V LD + + TGD Sbjct 1409 NLPEFRPVTIAHYPAVERRITFDYSVSAG----PVCSKTEAGYKV--LDVERAFRPTGD 1461 >RecName: Full=Genome polyprotein; Contains: RecName: Full=Leader protein; Contains: RecName: Full=Capsid protein VP0; AltName: Full=VP4-VP2; Contains: RecName: Full=Capsid protein VP4; AltName: Full=P1A; AltName: Full=Rho; AltName: Full=Virion protein 4; Contains: RecName: Full=Capsid protein VP2; AltName: Full=Beta; AltName: Full=P1B; AltName: Full=Virion protein 2; Contains: RecName: Full=Capsid protein VP3; AltName: Full=Gamma; AltName: Full=P1C; AltName: Full=Virion protein 3; Contains: RecName: Full=Capsid protein VP1; AltName: Full=Alpha; AltName: Full=P1D; AltName: Full=Virion protein 1; Contains: RecName: Full=Protein 2A; Short=P2A; Contains: RecName: Full=Protein 2B; Short=P2B; Contains: RecName: Full=Protein 2C; Short=P2C; Contains: RecName: Full=Protein 3A; Short=P3A; Contains: RecName: Full=VPg; AltName: Full=Protein 3B; Short=P3B; AltName: Full=Viral protein genome-linked; Contains: RecName: Full=Protease 3C; Short=P3C; AltName: Full=Picornain 3C; AltName: Full=p22; Contains: RecName: Full=RNA-directed RNA polymerase; Short=RdRp; AltName: Full=3D polymerase; Short=3Dpol; AltName: Full=Protein 3D; Short=3D [Seneca Valley virus USA/SSV-001] Sequence ID: Q155Z9.1 Length: 2181 Range 1: 1187 to 1321 Score:62.0 bits(149), Expect:6e-08, Method:Compositional matrix adjust., Identities:47/150(31%), Positives:75/150(50%), Gaps:18/150(12%) Query 534 RTQPIVIWLFGESGRGKSGMTWPLAIDLNNSLLDNVDEMRNF-SKNIYMRNVEQEFWDNY 592 R +P+V+ L G+ G GKS L ++L+ R + S+++Y + +F+D Y Sbjct 1187 RVEPVVVVLRGKPGCGKS---------LASTLIAQAVSKRLYGSQSVYSLPPDPDFFDGY 1237 Query 593 QGQNIVCXDDFGQMRDSSSNPNPEFMELIRTANIAPYPLHMAHLEDKRKTKFTSKVIIMT 652 +GQ + DD GQ D F +++ TA P +MA L +K + FTS +II T Sbjct 1238 KGQFVTLMDDLGQNPDGQDFST--FCQMVSTAQFLP---NMADLAEKGR-PFTSNLIIAT 1291 Query 653 SNVFEQDVNSLTFPDAFRRRV--DLCAEVK 680 +N+ ++ P A RR+ DL EV Sbjct 1292 TNLPHFSPVTIADPSAVSRRINYDLTLEVS 1321 >RecName: Full=Genome polyprotein; Contains: RecName: Full=Leader protein; Short=L; Contains: RecName: Full=Capsid protein VP0; AltName: Full=VP4-VP2; Contains: RecName: Full=Capsid protein VP4; AltName: Full=P1A; AltName: Full=Rho; AltName: Full=Virion protein 4; Contains: RecName: Full=Capsid protein VP2; AltName: Full=Beta; AltName: Full=P1B; AltName: Full=Virion protein 2; Contains: RecName: Full=Capsid protein VP3; AltName: Full=Gamma; AltName: Full=P1C; AltName: Full=Virion protein 3; Contains: RecName: Full=Capsid protein VP1; AltName: Full=Alpha; AltName: Full=P1D; AltName: Full=Virion protein 1; Contains: RecName: Full=Protein 2A; Short=P2A; AltName: Full=G; Contains: RecName: Full=Protein 2B; Short=I; Short=P2B; Contains: RecName: Full=Protein 2C; Short=C; Short=P2C; Contains: RecName: Full=Protein 3A; Short=P3A; Contains: RecName: Full=VPg; Short=P3B; AltName: Full=H; AltName: Full=Protein 3B; Contains: RecName: Full=Protease 3C; Short=P3C; AltName: Full=Picornain 3C; AltName: Full=p22; Contains: RecName: Full=RNA-directed RNA polymerase; Short=RdRp; AltName: Full=3D polymerase; Short=3Dpol; AltName: Full=E; AltName: Full=Protein 3D; Short=3D; Flags: Precursor [Encephalomyocarditis virus strain emc-b nondiabetogenic] Sequence ID: P17593.1 Length: 2292 Range 1: 1303 to 1461 Score:61.6 bits(148), Expect:7e-08, Method:Compositional matrix adjust., Identities:50/179(28%), Positives:85/179(47%), Gaps:20/179(11%) Query 534 RTQPIVIWLFGESGRGKSGMTWPLAIDLNNSLLDNVDEMRNFSKNIYMRNVEQEFWDNYQ 593 R +P+VI L G++G+GKS + +A ++ ++ +++Y + +F+D Y+ Sbjct 1303 RCEPVVIVLRGDAGQGKSLSSQVIAQAVSKTIFGR--------QSVYSLPPDSDFFDGYE 1354 Query 594 GQNIVCXDDFGQMRDSSSNPNPEFMELIRTANIAPYPLHMAHLEDKRKTKFTSKVIIMTS 653 Q DD GQ D S F +++ T N P +MA LE + T FTS++++ T+ Sbjct 1355 NQFAAIMDDLGQNPDGSDFTT--FCQMVSTTNFLP---NMASLE-RNGTPFTSQIVVATT 1408 Query 654 NVFEQDVNSLTFPDAFRRRVDLCAEVKNKDEFTKMCWSKSAGKMVQRLDKGKVKKITGD 712 N+ E ++ A RR+ V +C AG V LD + + TGD Sbjct 1409 NLPEFRPVTIAHYPAVERRITFDYSVSAG----PVCSKTEAGYKV--LDVERAFRPTGD 1461 >RecName: Full=Genome polyprotein; Contains: RecName: Full=Leader protein; Short=L; Contains: RecName: Full=Capsid protein VP0; AltName: Full=VP4-VP2; Contains: RecName: Full=Capsid protein VP4; AltName: Full=P1A; AltName: Full=Rho; AltName: Full=Virion protein 4; Contains: RecName: Full=Capsid protein VP2; AltName: Full=Beta; AltName: Full=P1B; AltName: Full=Virion protein 2; Contains: RecName: Full=Capsid protein VP3; AltName: Full=Gamma; AltName: Full=P1C; AltName: Full=Virion protein 3; Contains: RecName: Full=Capsid protein VP1; AltName: Full=Alpha; AltName: Full=P1D; AltName: Full=Virion protein 1; Contains: RecName: Full=Protein 2A; Short=P2A; AltName: Full=G; Contains: RecName: Full=Protein 2B; Short=I; Short=P2B; Contains: RecName: Full=Protein 2C; Short=C; Short=P2C; Contains: RecName: Full=Protein 3A; Short=P3A; Contains: RecName: Full=VPg; Short=P3B; AltName: Full=H; AltName: Full=Protein 3B; Contains: RecName: Full=Protease 3C; Short=P3C; AltName: Full=Picornain 3C; AltName: Full=p22; Contains: RecName: Full=RNA-directed RNA polymerase; Short=RdRp; AltName: Full=3D polymerase; Short=3Dpol; AltName: Full=E; AltName: Full=Protein 3D; Short=3D; Flags: Precursor [cardiovirus A1] Sequence ID: Q66765.1 Length: 2292 Range 1: 1303 to 1461 Score:60.5 bits(145), Expect:2e-07, Method:Compositional matrix adjust., Identities:49/179(27%), Positives:86/179(48%), Gaps:20/179(11%) Query 534 RTQPIVIWLFGESGRGKSGMTWPLAIDLNNSLLDNVDEMRNFSKNIYMRNVEQEFWDNYQ 593 R +P+VI L G++G+GKS + +A ++ ++ +++Y + +F+D Y+ Sbjct 1303 RCEPVVIVLRGDAGQGKSLSSQVIAQAVSKTIFGR--------QSVYSLPPDSDFFDGYE 1354 Query 594 GQNIVCXDDFGQMRDSSSNPNPEFMELIRTANIAPYPLHMAHLEDKRKTKFTSKVIIMTS 653 Q DD GQ D S F +++ T N P +MA LE ++ T FTS++++ T+ Sbjct 1355 NQFAAIMDDLGQNPDGSDFTT--FCQMVSTTNFLP---NMASLE-RKGTPFTSQLVVATT 1408 Query 654 NVFEQDVNSLTFPDAFRRRVDLCAEVKNKDEFTKMCWSKSAGKMVQRLDKGKVKKITGD 712 N+ E ++ A RR+ V +C AG V LD + + TG+ Sbjct 1409 NLPEFRPVTIAHYPAVERRITFDYSVSAG----PVCSKTEAGYKV--LDVERAFRPTGE 1461 >RecName: Full=Genome polyprotein; Contains: RecName: Full=Leader protein; Short=L; Contains: RecName: Full=Capsid protein VP0; AltName: Full=VP4-VP2; Contains: RecName: Full=Capsid protein VP4; AltName: Full=P1A; AltName: Full=Rho; AltName: Full=Virion protein 4; Contains: RecName: Full=Capsid protein VP2; AltName: Full=Beta; AltName: Full=P1B; AltName: Full=Virion protein 2; Contains: RecName: Full=Capsid protein VP3; AltName: Full=Gamma; AltName: Full=P1C; AltName: Full=Virion protein 3; Contains: RecName: Full=Capsid protein VP1; AltName: Full=Alpha; AltName: Full=P1D; AltName: Full=Virion protein 1; Contains: RecName: Full=Protein 2A; Short=P2A; AltName: Full=G; Contains: RecName: Full=Protein 2B; Short=I; Short=P2B; Contains: RecName: Full=Protein 2C; Short=C; Short=P2C; Contains: RecName: Full=Protein 3A; Short=P3A; Contains: RecName: Full=VPg; Short=P3B; AltName: Full=H; AltName: Full=Protein 3B; Contains: RecName: Full=Protease 3C; Short=P3C; AltName: Full=Picornain 3C; AltName: Full=p22; Contains: RecName: Full=RNA-directed RNA polymerase; Short=RdRp; AltName: Full=3D polymerase; Short=3Dpol; AltName: Full=E; AltName: Full=Protein 3D; Short=3D; Flags: Precursor [Encephalomyocarditis virus] Sequence ID: P03304.1 Length: 2290 Range 1: 1301 to 1459 Score:60.1 bits(144), Expect:2e-07, Method:Compositional matrix adjust., Identities:49/179(27%), Positives:86/179(48%), Gaps:20/179(11%) Query 534 RTQPIVIWLFGESGRGKSGMTWPLAIDLNNSLLDNVDEMRNFSKNIYMRNVEQEFWDNYQ 593 R +P+VI L G++G+GKS + +A ++ ++ +++Y + +F+D Y+ Sbjct 1301 RCEPVVIVLRGDAGQGKSLSSQVIAQAVSKTIFGR--------QSVYSLPPDSDFFDGYE 1352 Query 594 GQNIVCXDDFGQMRDSSSNPNPEFMELIRTANIAPYPLHMAHLEDKRKTKFTSKVIIMTS 653 Q DD GQ D S F +++ T N P +MA LE ++ T FTS++++ T+ Sbjct 1353 NQFAAIMDDLGQNPDGSDFTT--FCQMVSTTNFLP---NMASLE-RKGTPFTSQLVVATT 1406 Query 654 NVFEQDVNSLTFPDAFRRRVDLCAEVKNKDEFTKMCWSKSAGKMVQRLDKGKVKKITGD 712 N+ E ++ A RR+ V +C AG V LD + + TG+ Sbjct 1407 NLPEFRPVTIAHYPAVERRITFDYSVSAG----PVCSKTEAGYKV--LDVERAFRPTGE 1459 >RecName: Full=RNA1 polyprotein; AltName: Full=P1; Contains: RecName: Full=P1A protein; Short=1A; AltName: Full=Protease cofactor; Contains: RecName: Full=Putative ATP-dependent helicase; AltName: Full=1B; AltName: Full=Membrane-binding protein; AltName: Full=NTP-binding protein; Short=NTB; Contains: RecName: Full=Viral genome-linked protein; AltName: Full=1C-VPg; Contains: RecName: Full=Picornain 3C-like protease; Short=3C-like protease; AltName: Full=1D-PRO; Contains: RecName: Full=RNA-directed RNA polymerase; AltName: Full=1E-POL [Tobacco ringspot virus strain Bud Blight] Sequence ID: Q88893.1 Length: 2304 Range 1: 747 to 946 Score:56.6 bits(135), Expect:2e-06, Method:Compositional matrix adjust., Identities:50/214(23%), Positives:102/214(47%), Gaps:18/214(8%) Query 479 IQRIENMYKKGLEISRNI--AELKLPTKLTISFNTHMRYLTEVFKSVDTSGAFGNKPRTQ 536 +++ E + G ++ R + A+ KL + + + L ++ +G F + R + Sbjct 747 LEQCERLIADGHKLLRGMGDADRKLSSSFLSTVQRKVSDLEKIHTQSVRAGYFEGR-RME 805 Query 537 PIVIWLFGESGRGKSGMTWPLAIDLNNSLLDNVDEMRNFSKN-IYMRNVEQEFWDNYQGQ 595 P +++ G S GKS + P++ +L + FS++ IY +N ++W Y+ Q Sbjct 806 PFWVYIHGPSHCGKSLLMEPMSRELLRA--------GGFSESSIYTKNSCDKYWSRYRRQ 857 Query 596 NIVCXDDFGQMRDSSSNPNPEFMELIRTANIAPYPLHMAHLEDKRKTKFTSKVIIMTSNV 655 V DD + ++P+ E +LI PL MA +EDK F S +++ +SN Sbjct 858 ACVQIDD---LSAGKTDPSLE-SQLINLVASKEVPLDMAEVEDK-GILFDSAILVTSSNT 912 Query 656 FEQDVNS-LTFPDAFRRRVDLCAEVKNKDEFTKM 688 N+ + +A++ R+++ + + K E++ M Sbjct 913 AHVPTNANVNHAEAYKNRMNVVIQCRRKPEYSPM 946 >RecName: Full=Genome polyprotein; Contains: RecName: Full=Protein p37; Contains: RecName: Full=NTPase; AltName: Full=p40; Contains: RecName: Full=Protein p20; Contains: RecName: Full=Viral genome-linked protein; AltName: Full=VPG; Contains: RecName: Full=3C-like protease; Short=3CLpro; AltName: Full=Calicivirin; Contains: RecName: Full=RNA-directed RNA polymerase; Short=RdRp [Lordsdale virus] Sequence ID: P54634.1 Length: 1699 Range 1: 485 to 613 Score:51.2 bits(121), Expect:1e-04, Method:Compositional matrix adjust., Identities:41/142(29%), Positives:67/142(47%), Gaps:13/142(9%) Query 534 RTQPIVIWLFGESGRGKSGMTWPLAIDLNNSLLDNVDEMRNFSKNIYMRNVEQEFWDNYQ 593 R +P+V+ + G+ G GK+ + LA + SL + + RN + WD Y+ Sbjct 485 RLRPVVVMISGKPGIGKTHLARELAKRIAASLTGDQ------RVGLIPRN-GVDHWDAYK 537 Query 594 GQNIVCXDDFGQMRDSSSNPNPEFMELIRTANIAPYPLHMAHLEDKRKTKFTSKVIIMTS 653 G+ +V DD+G SNP + + L A+ P L+ +E+K K F S II+T+ Sbjct 538 GERVVLWDDYGM-----SNPIHDALRLQELADTCPLTLNCDRIENKGKV-FDSDAIIITT 591 Query 654 NVFEQDVNSLTFPDAFRRRVDL 675 N+ +A RR+D Sbjct 592 NLANPAPLDYVNFEACSRRIDF 613 >RecName: Full=Genome polyprotein; Contains: RecName: Full=P1 proteinase; AltName: Full=N-terminal protein; Contains: RecName: Full=Helper component proteinase; Short=HC-pro; Contains: RecName: Full=Protein P3; Contains: RecName: Full=6 kDa protein 1; Short=6K1; Contains: RecName: Full=Cytoplasmic inclusion protein; Short=CI; Contains: RecName: Full=6 kDa protein 2; Short=6K2; Contains: RecName: Full=Viral genome-linked protein; AltName: Full=VPg; Contains: RecName: Full=Nuclear inclusion protein A; Short=NI-a; Short=NIa; AltName: Full=49 kDa proteinase; Short=49 kDa-Pro; AltName: Full=NIa-pro; Contains: RecName: Full=Nuclear inclusion protein B; Short=NI-b; Short=NIb; AltName: Full=RNA-directed RNA polymerase; Contains: RecName: Full=Capsid protein; Short=CP; AltName: Full=Coat protein [Lettuce mosaic virus (strain 0 / French isolate)] Sequence ID: P31999.3 Length: 3255 Range 1: 2598 to 2779 Score:50.4 bits(119), Expect:2e-04, Method:Compositional matrix adjust., Identities:49/193(25%), Positives:81/193(41%), Gaps:12/193(6%) Query 1526 QGWFGAEGEYILDEDVFEAVKTRIQNAKNGVRTPVMWVDTLKDERRPIEKVDQLKTRVFS 1585 +G+ E E IL E R+ K GV W +LK E RP+EKV KTRVF+ Sbjct 2598 EGYGPEEKENILRESC-----KRLYTGKFGV-----WNGSLKSELRPMEKVMANKTRVFT 2647 Query 1586 NGPMDFSITFRMYYLGFIAHLMENRITNEVSIGTNVYSQDWNKTVRKLKTMGPKVIAGDF 1645 P+D + ++ F + I ++G + WN+ + KL G D Sbjct 2648 AAPLDTLLAGKVCVDDFNNYFYSKNIEAPWTVGMTKFYGGWNELLTKLPD-GWVYCDADG 2706 Query 1646 STFDGSLNVCIMEKFADLANEFYDDGS-ENALIRHVLLMDVYNSTHICGDSVYMMTHSQP 1704 S FD SL+ ++ + +F +D +++++ VY + ++ Sbjct 2707 SQFDSSLSPFLINSVLRIRLKFMEDWDLGEQMLKNLYTEIVYTAILTPDSTIVKKFKGNN 2766 Query 1705 SGNPATTPLNCFI 1717 SG P+T N + Sbjct 2767 SGQPSTVVDNTLM 2779 >RecName: Full=Genome polyprotein; Contains: RecName: Full=P1 proteinase; AltName: Full=N-terminal protein; Contains: RecName: Full=Helper component proteinase; Short=HC-pro; Contains: RecName: Full=Protein P3; Contains: RecName: Full=6 kDa protein 1; Short=6K1; Contains: RecName: Full=Cytoplasmic inclusion protein; Short=CI; Contains: RecName: Full=6 kDa protein 2; Short=6K2; Contains: RecName: Full=Viral genome-linked protein; AltName: Full=VPg; Contains: RecName: Full=Nuclear inclusion protein A; Short=NI-a; Short=NIa; AltName: Full=49 kDa proteinase; Short=49 kDa-Pro; AltName: Full=NIa-pro; Contains: RecName: Full=Nuclear inclusion protein B; Short=NI-b; Short=NIb; AltName: Full=RNA-directed RNA polymerase; Contains: RecName: Full=Capsid protein; Short=CP; AltName: Full=Coat protein [Lettuce mosaic virus (strain E)] Sequence ID: P89876.1 Length: 3255 Range 1: 2606 to 2779 Score:49.7 bits(117), Expect:3e-04, Method:Compositional matrix adjust., Identities:44/180(24%), Positives:76/180(42%), Gaps:7/180(3%) Query 1539 EDVFEAVKTRIQNAKNGVRTPVMWVDTLKDERRPIEKVDQLKTRVFSNGPMDFSITFRMY 1598 E++ R+ K GV W +LK E RP+EKV KTRVF+ P+D + ++ Sbjct 2606 ENILRESCKRLYTGKFGV-----WNGSLKSELRPMEKVMANKTRVFTAAPLDTLLAGKVC 2660 Query 1599 YLGFIAHLMENRITNEVSIGTNVYSQDWNKTVRKLKTMGPKVIAGDFSTFDGSLNVCIME 1658 F + I ++G + WN+ + KL G D S FD SL+ ++ Sbjct 2661 VDDFNNYFYSKNIEAPWTVGMTKFYGGWNELLTKLPD-GWVYCDADGSQFDSSLSPFLIN 2719 Query 1659 KFADLANEFYDDGS-ENALIRHVLLMDVYNSTHICGDSVYMMTHSQPSGNPATTPLNCFI 1717 + +F +D +++++ VY + ++ SG P+T N + Sbjct 2720 SVLRIRLKFMEDWDLGEQMLKNLYTEIVYTAILTPDSTIVKKFKGNNSGQPSTVVDNTLM 2779 >RecName: Full=Genome polyprotein; Contains: RecName: Full=Protein p48; Contains: RecName: Full=NTPase; AltName: Full=p41; Contains: RecName: Full=Protein p22; Contains: RecName: Full=Viral genome-linked protein; AltName: Full=VPG; Contains: RecName: Full=3C-like protease; Short=3CLpro; AltName: Full=Calicivirin; Contains: RecName: Full=RNA-directed RNA polymerase; Short=RdRp [Norovirus Hu/1968/US] Sequence ID: Q83883.1 Length: 1789 Range 1: 550 to 658 Score:44.3 bits(103), Expect:0.013, Method:Compositional matrix adjust., Identities:34/122(28%), Positives:56/122(45%), Gaps:13/122(10%) Query 534 RTQPIVIWLFGESGRGKSGMTWPLAIDLNNSLLDNVDEMRNFSKNIYMRNVEQEFWDNYQ 593 R +P+VI + G G GK+ LA L N E+R K + + WD Y Sbjct 550 RMRPVVIMMCGPPGIGKTKAAEHLAKRLAN-------EIRPGGKVGLVPREAVDHWDGYH 602 Query 594 GQNIVCXDDFGQMRDSSSNPNPEFMELIRTANIAPYPLHMAHLEDKRKTKFTSKVIIMTS 653 G+ ++ DD+G + + +L A+ AP L+ +E+K +F S I++T+ Sbjct 603 GEEVMLWDDYGMTKIQE-----DCNKLQAIADSAPLTLNCDRIENK-GMQFVSDAIVITT 656 Query 654 NV 655 N Sbjct 657 NA 658 >RecName: Full=Genome polyprotein; Contains: RecName: Full=Protein p48; Contains: RecName: Full=NTPase; AltName: Full=p41; Contains: RecName: Full=Protein p22; Contains: RecName: Full=Viral genome-linked protein; AltName: Full=VPG; Contains: RecName: Full=3C-like protease; Short=3CLpro; AltName: Full=Calicivirin; Contains: RecName: Full=RNA-directed RNA polymerase; Short=RdRp [Southampton virus (serotype 3)] Sequence ID: Q04544.2 Length: 1788 Range 1: 551 to 659 Score:43.5 bits(101), Expect:0.026, Method:Compositional matrix adjust., Identities:34/122(28%), Positives:56/122(45%), Gaps:13/122(10%) Query 534 RTQPIVIWLFGESGRGKSGMTWPLAIDLNNSLLDNVDEMRNFSKNIYMRNVEQEFWDNYQ 593 R +P+VI + G G GK+ LA L N E+R K + + WD Y Sbjct 551 RMRPVVIMMCGPPGIGKTKAAEHLAKRLAN-------EIRPGGKVGLVPREAVDHWDGYH 603 Query 594 GQNIVCXDDFGQMRDSSSNPNPEFMELIRTANIAPYPLHMAHLEDKRKTKFTSKVIIMTS 653 G+ ++ DD+G + + +L A+ AP L+ +E+K +F S I++T+ Sbjct 604 GEEVMLWDDYGMTKILD-----DCNKLQAIADSAPLTLNCDRIENK-GMQFVSDAIVITT 657 Query 654 NV 655 N Sbjct 658 NA 659