RID: 3XP8F56101R Job Title:Protein Sequence Program: BLASTP Query: unnamed protein product ID: lcl|Query_813215(amino acid) Length: 95 Database: swissprot Non-redundant UniProtKB/SwissProt sequences Sequences producing significant alignments: Scientific Common Max Total Query E Per. Acc. Description Name Name Taxid Score Score cover Value Ident Len Accession RecName: Full=Gag polyprotein; AltName: Full=Core polyprotein;... Simian retro... NA 39068 204 204 100% 5e-63 100.00 654 P51516.3 RecName: Full=Gag-Pro-Pol polyprotein; Contains: RecName:... Simian retro... NA 39068 179 179 86% 1e-52 100.00 1768 P51517.2 RecName: Full=Gag-Pro polyprotein; Contains: RecName:... Simian retro... NA 39068 177 177 96% 3e-52 91.30 908 P51518.2 RecName: Full=Gag polyprotein; AltName: Full=Core polyprotein;... Simian retro... NA 11942 174 174 100% 9e-52 84.38 658 P04022.3 RecName: Full=Gag polyprotein; AltName: Full=Core polyprotein;... Mason-Pfizer... NA 11855 172 172 100% 3e-51 84.38 657 P07567.3 RecName: Full=Gag-Pro-Pol polyprotein; AltName: Full=Pr180;... Mason-Pfizer... NA 11855 152 152 98% 2e-43 74.74 1771 P07572.2 RecName: Full=Gag-Pro-Pol polyprotein; Contains: RecName:... Simian retro... NA 11942 152 152 98% 4e-43 74.74 1772 P04025.2 RecName: Full=Gag-Pro polyprotein; AltName: Full=Pr95; Contain... Mason-Pfizer... NA 11855 151 151 100% 5e-43 73.96 911 P07570.2 RecName: Full=Gag-Pro polyprotein; Contains: RecName:... Simian retro... NA 11942 150 150 98% 1e-42 74.74 912 P04024.2 RecName: Full=Gag polyprotein; AltName: Full=Core polyprotein;... Jaagsiekte s... NA 11746 98.2 98.2 100% 3e-24 50.00 612 P31622.1 RecName: Full=Gag-Pro-Pol polyprotein; Contains: RecName:... Mouse mammar... NA 11758 88.6 88.6 74% 7e-21 51.95 1755 P03365.3 RecName: Full=Gag-Pro-Pol polyprotein; Contains: RecName:... Jaagsiekte s... NA 11746 87.8 87.8 96% 1e-20 44.55 1726 P31623.2 RecName: Full=Gag-Pro polyprotein; Contains: RecName:... Mouse mammar... NA 11758 86.7 86.7 74% 3e-20 51.95 860 P10271.2 RecName: Full=Gag-Pro-Pol polyprotein; Contains: RecName:... Mouse mammar... NA 11759 85.9 85.9 74% 5e-20 49.35 1755 P11283.2 RecName: Full=Gag-Pro polyprotein; Contains: RecName:... Mouse mammar... NA 11759 84.0 84.0 74% 3e-19 49.35 860 Q9IZT2.1 RecName: Full=Gag polyprotein; Contains: RecName: Full=Matrix... Mouse mammar... NA 11758 83.2 83.2 64% 5e-19 59.02 591 P10258.3 RecName: Full=Gag-Pro polyprotein; Contains: RecName:... Jaagsiekte s... NA 11746 80.5 80.5 86% 5e-18 47.25 866 P31625.3 RecName: Full=Gag polyprotein; Contains: RecName: Full=Matrix... Mouse mammar... NA 11759 78.2 78.2 64% 3e-17 55.56 591 P11284.3 RecName: Full=Endogenous retrovirus group K member 9 Pol... Homo sapiens human 9606 74.7 74.7 77% 5e-16 46.91 1117 P63128.3 RecName: Full=Endogenous retrovirus group K member 19 Gag... Homo sapiens human 9606 74.7 74.7 77% 5e-16 46.91 666 Q9YNA8.3 RecName: Full=Endogenous retrovirus group K member 10 Gag... Homo sapiens human 9606 74.7 74.7 77% 5e-16 46.91 666 P87889.4 RecName: Full=Endogenous retrovirus group K member 24 Gag... Homo sapiens human 9606 74.3 74.3 77% 6e-16 46.91 666 P63145.2 RecName: Full=Endogenous retrovirus group K member 9 Gag... Homo sapiens human 9606 74.3 74.3 77% 6e-16 46.91 666 P63126.2 RecName: Full=Endogenous retrovirus group K member 7 Gag... Homo sapiens human 9606 74.3 74.3 77% 6e-16 46.91 666 P63130.2 RecName: Full=Endogenous retrovirus group K member 113 Gag... Homo sapiens human 9606 74.3 74.3 77% 6e-16 46.91 666 P62684.2 RecName: Full=Endogenous retrovirus group K member 21 Gag... Homo sapiens human 9606 74.3 74.3 77% 6e-16 46.91 666 P62683.2 RecName: Full=Endogenous retrovirus group K member 8 Gag... Homo sapiens human 9606 74.3 74.3 77% 7e-16 46.91 647 P62685.2 RecName: Full=Endogenous retrovirus group K member 6 Gag... Homo sapiens human 9606 73.2 73.2 75% 2e-15 46.84 666 Q7LDI9.3 RecName: Full=Endogenous retrovirus group K member 5 Gag... Homo sapiens human 9606 66.6 66.6 75% 3e-13 45.00 667 Q9HDB9.3 RecName: Full=Gag polyprotein; AltName: Full=Core polyprotein;... Squirrel mon... NA 11856 52.8 52.8 42% 2e-08 60.00 740 P21411.3 RecName: Full=Intracisternal A-particle Gag-related polyprotei... Mouse intrac... NA 11753 52.4 52.4 70% 4e-08 38.89 827 P11365.2 RecName: Full=Gag-Pro-Pol polyprotein; Contains: RecName:... Squirrel mon... NA 11856 46.2 46.2 53% 6e-06 45.10 1880 P03364.3 RecName: Full=Gag-Pro polyprotein; Contains: RecName:... Squirrel mon... NA 11856 44.7 44.7 42% 2e-05 50.00 998 P21407.2 RecName: Full=ATP-dependent RNA helicase glh-4; AltName:... Caenorhabdit... NA 6239 43.9 43.9 63% 3e-05 42.62 1156 O76743.2 RecName: Full=Intracisternal A-particle Gag-related polyprotei... Golden hamst... NA 11752 43.5 43.5 68% 4e-05 41.54 572 P04023.1 RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;... HIV-1 M:B_AR... NA 11685 39.7 39.7 56% 0.001 40.74 1437 P03369.3 RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;... Human immuno... NA 11697 39.3 39.3 66% 0.002 34.92 1440 P04588.3 RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;... SIVcpz TAN1 NA 388910 38.5 38.5 53% 0.003 35.29 1462 Q8AII1.4 RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;... HIV-1 O_MVP5180 NA 388816 38.1 73.5 93% 0.003 32.31 1446 Q79666.3 RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;... Human immuno... NA 11699 38.1 38.1 56% 0.004 38.89 1434 P20892.3 RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;... HIV-1 M:F1_9... NA 388814 37.7 37.7 71% 0.005 31.51 1430 O89290.3 RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;... Human immuno... NA 11689 37.7 37.7 56% 0.005 38.89 1435 P04589.3 RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;... Human immuno... NA 11703 37.7 37.7 66% 0.005 34.92 1428 P24740.3 RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;... Human immuno... NA 11695 37.4 37.4 56% 0.006 38.89 1432 P18802.3 RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;... Human immuno... NA 11688 37.4 37.4 56% 0.006 37.04 1439 P20875.3 RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;... HIV-1 M:G_92... NA 388825 37.0 37.0 56% 0.008 37.04 1435 O41798.3 RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;... HIV-1 N_YBF30 NA 388818 37.0 72.0 57% 0.009 48.28 1449 O91080.3 RecName: Full=Gag polyprotein; Contains: RecName: Full=Matrix... Caprine arth... NA 11661 37.0 37.0 72% 0.009 34.78 441 P33458.1 RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;... HIV-1 M:F1_V... NA 388813 37.0 37.0 54% 0.009 36.54 1430 Q9QSR3.3 RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;... HIV-1 M:J_SE... NA 388904 37.0 37.0 54% 0.010 36.54 1432 Q9WC63.3 RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;... HIV-1 M:J_SE... NA 388905 37.0 37.0 54% 0.010 36.54 1432 Q9WC54.3 RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;... Human immuno... NA 362651 37.0 37.0 56% 0.010 37.04 1435 P35963.3 RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;... Human immuno... NA 11698 36.6 36.6 56% 0.011 37.04 1435 P12497.4 RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;... HIV-1 M:H_90... NA 388826 36.6 36.6 48% 0.011 34.78 1435 O93215.4 RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;... HIV-1 M:F2_M... NA 388815 36.6 36.6 77% 0.011 30.38 1430 Q9QBZ5.3 RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;... Human immuno... NA 11683 36.6 36.6 56% 0.013 37.04 1436 P12499.3 RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;... HIV-1 M:B_89.6 NA 401671 36.6 36.6 54% 0.013 36.54 1435 Q73368.3 RecName: Full=Gag polyprotein; AltName: Full=Pr55Gag; Contains... Human immuno... NA 11697 36.2 36.2 80% 0.015 32.53 505 P04594.3 RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;... Simian immun... NA 31684 36.2 36.2 72% 0.018 33.33 1472 Q02836.2 RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;... HIV-1 M:C_92... NA 388812 36.2 36.2 54% 0.018 34.62 1431 O12158.2 RecName: Full=Replication protein A 70 kDa DNA-binding subunit... Oryza sativa... Japanese rice 39947 36.2 36.2 45% 0.019 39.53 951 Q65XV7.1 RecName: Full=Gag-Pro polyprotein; AltName: Full=Pr76Gag-Pro;... HTLV-3 strai... NA 402036 36.2 36.2 52% 0.019 31.37 584 Q0R5R3.3 RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;... HIV-1 M:G_SE... NA 388824 35.8 35.8 54% 0.020 34.62 1433 O89940.3 RecName: Full=Gag polyprotein; AltName: Full=Pr55Gag; Contains... Human immuno... NA 11689 35.8 35.8 70% 0.021 35.14 500 P04592.3 RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;... Human immuno... NA 11686 35.8 35.8 56% 0.021 35.19 1447 P03367.3 RecName: Full=Gag polyprotein; AltName: Full=Pr55Gag; Contains... HIV-1 M:B_AR... NA 11685 35.8 35.8 56% 0.023 40.74 502 P03349.3 RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;... HIV-1 M:K_97... NA 388907 35.8 35.8 48% 0.024 32.61 1429 Q9QBZ9.2 RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;... HIV-1 M:K_96... NA 388906 35.8 35.8 54% 0.024 34.62 1430 Q9QBY3.3 RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;... HIV-1 M:C_ET... NA 388796 35.8 35.8 54% 0.024 34.62 1439 Q75002.3 RecName: Full=Gag-Pro-Pol polyprotein; AltName:... Human T-cell... NA 406769 35.8 35.8 54% 0.026 28.30 1440 Q4U0X6.4 RecName: Full=Gag polyprotein; Contains: RecName: Full=Matrix... Equine infec... NA 11670 35.8 35.8 76% 0.026 30.14 486 P69730.1 RecName: Full=Gag polyprotein; AltName: Full=Pr53Gag; Contains... HTLV-3 strai... NA 402036 35.4 35.4 52% 0.026 31.37 422 Q0R5R4.3 RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;... HIV-1 M:B_MN NA 11696 35.8 35.8 56% 0.027 35.19 1441 P05961.3 RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;... Human immuno... NA 82834 35.4 35.4 54% 0.028 34.62 1435 P0C6F2.1 RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;... SIVcpz EK505 NA 388912 35.4 35.4 47% 0.029 33.33 1448 Q1A249.3 RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;... Simian immun... NA 11731 35.4 35.4 61% 0.029 38.33 1467 P05895.2 RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;... HIV-1 O_ANT70 NA 327105 35.4 35.4 65% 0.029 30.77 1435 Q77373.3 RecName: Full=Gag polyprotein; AltName: Full=Pr55Gag; Contains... Human immuno... NA 11699 35.4 35.4 70% 0.029 35.14 499 P20889.3 RecName: Full=Cellular nucleic acid-binding protein homolog... Schizosaccha... NA 284812 35.0 35.0 38% 0.034 42.11 179 P36627.1 RecName: Full=Gag-Pro polyprotein; AltName: Full=Pr76Gag-Pro;... Human T-cell... NA 406769 35.4 35.4 54% 0.036 28.30 584 Q09SZ9.3 RecName: Full=Gag-Pro-Pol polyprotein; AltName:... HTLV-3 strai... NA 402036 35.0 35.0 52% 0.039 31.37 1440 Q0R5R2.3 RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;... HIV-1 M:B_HXB2R NA 11706 35.0 35.0 56% 0.041 35.19 1435 P04585.4 RecName: Full=Gag polyprotein; AltName: Full=Pr55Gag; Contains... HIV-1 M:F1_9... NA 388814 35.0 35.0 80% 0.043 33.33 492 O89291.3 RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;... Human immuno... NA 11678 35.0 35.0 56% 0.043 35.19 1447 P03366.3 RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr170Gag-Pol;... Jembrana dis... NA 36370 35.0 35.0 48% 0.045 32.61 1432 Q82851.1 RecName: Full=Glycine-rich protein 2 [Nicotiana sylvestris] Nicotiana sy... wood tobacco 4096 34.7 34.7 47% 0.045 35.85 214 P27484.1 RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;... HIV-1 M:F2_M... NA 388823 35.0 35.0 77% 0.049 29.11 1434 Q9QBZ1.3 Alignments: >RecName: Full=Gag polyprotein; AltName: Full=Core polyprotein; Contains: RecName: Full=Matrix protein p10; Contains: RecName: Full=Phosphorylated protein pp24; Contains: RecName: Full=Phosphorylated protein pp18; Contains: RecName: Full=p12; Contains: RecName: Full=Capsid protein p27; Contains: RecName: Full=Nucleocapsid protein p14; Contains: RecName: Full=p4 [Simian retrovirus 2] Sequence ID: P51516.3 Length: 654 Range 1: 524 to 618 Score:204 bits(519), Expect:5e-63, Method:Compositional matrix adjust., Identities:95/95(100%), Positives:95/95(100%), Gaps:0/95(0%) Query 1 AAAFSGQTVKDLLNNKNKDRGGCFKCGKKGHFAKDCRDHSNKNPESKVPGLCPRCKRGKH 60 AAAFSGQTVKDLLNNKNKDRGGCFKCGKKGHFAKDCRDHSNKNPESKVPGLCPRCKRGKH Sbjct 524 AAAFSGQTVKDLLNNKNKDRGGCFKCGKKGHFAKDCRDHSNKNPESKVPGLCPRCKRGKH 583 Query 61 WANECKSKTDSQGNPLPPHQGNGMRGQPQAPKQAY 95 WANECKSKTDSQGNPLPPHQGNGMRGQPQAPKQAY Sbjct 584 WANECKSKTDSQGNPLPPHQGNGMRGQPQAPKQAY 618 >RecName: Full=Gag-Pro-Pol polyprotein; Contains: RecName: Full=Matrix protein p10; Contains: RecName: Full=Phosphorylated protein pp24; Contains: RecName: Full=Phosphorylated protein pp18; Contains: RecName: Full=p12; Contains: RecName: Full=Capsid protein p27; Contains: RecName: Full=Nucleocapsid protein-dUTPase; Short=NC-dUTPase; Contains: RecName: Full=Protease 17 kDa; Contains: RecName: Full=Protease 13 kDa; Contains: RecName: Full=G-patch peptide; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; Short=RT; Contains: RecName: Full=Integrase; Short=IN [Simian retrovirus 2] Sequence ID: P51517.2 Length: 1768 Range 1: 524 to 605 Score:179 bits(454), Expect:1e-52, Method:Compositional matrix adjust., Identities:82/82(100%), Positives:82/82(100%), Gaps:0/82(0%) Query 1 AAAFSGQTVKDLLNNKNKDRGGCFKCGKKGHFAKDCRDHSNKNPESKVPGLCPRCKRGKH 60 AAAFSGQTVKDLLNNKNKDRGGCFKCGKKGHFAKDCRDHSNKNPESKVPGLCPRCKRGKH Sbjct 524 AAAFSGQTVKDLLNNKNKDRGGCFKCGKKGHFAKDCRDHSNKNPESKVPGLCPRCKRGKH 583 Query 61 WANECKSKTDSQGNPLPPHQGN 82 WANECKSKTDSQGNPLPPHQGN Sbjct 584 WANECKSKTDSQGNPLPPHQGN 605 >RecName: Full=Gag-Pro polyprotein; Contains: RecName: Full=Matrix protein p10; Contains: RecName: Full=Phosphorylated protein pp24; Contains: RecName: Full=Phosphorylated protein pp18; Contains: RecName: Full=p12; Contains: RecName: Full=Capsid protein p27; Contains: RecName: Full=Nucleocapsid protein-dUTPase; Short=NC-dUTPase; Contains: RecName: Full=Protease 17 kDa; Contains: RecName: Full=Protease 13 kDa; Contains: RecName: Full=G-patch peptide [Simian retrovirus 2] Sequence ID: P51518.2 Length: 908 Range 1: 524 to 615 Score:177 bits(449), Expect:3e-52, Method:Compositional matrix adjust., Identities:84/92(91%), Positives:85/92(92%), Gaps:0/92(0%) Query 1 AAAFSGQTVKDLLNNKNKDRGGCFKCGKKGHFAKDCRDHSNKNPESKVPGLCPRCKRGKH 60 AAAFSGQTVKDLLNNKNKDRGGCFKCGKKGHFAKDCRDHSNKNPESKVPGLCPRCKRGKH Sbjct 524 AAAFSGQTVKDLLNNKNKDRGGCFKCGKKGHFAKDCRDHSNKNPESKVPGLCPRCKRGKH 583 Query 61 WANECKSKTDSQGNPLPPHQGNGMRGQPQAPK 92 WANECKSKTDSQGNPLPPHQGN G P+ Sbjct 584 WANECKSKTDSQGNPLPPHQGNRDEGPAPGPE 615 >RecName: Full=Gag polyprotein; AltName: Full=Core polyprotein; Contains: RecName: Full=Matrix protein p10; Contains: RecName: Full=Phosphorylated protein pp24; Contains: RecName: Full=Phosphorylated protein pp18; Contains: RecName: Full=p12; Contains: RecName: Full=Capsid protein p27; Contains: RecName: Full=Nucleocapsid protein p14; Contains: RecName: Full=p4 [Simian retrovirus 1] Sequence ID: P04022.3 Length: 658 Range 1: 527 to 622 Score:174 bits(441), Expect:9e-52, Method:Compositional matrix adjust., Identities:81/96(84%), Positives:89/96(92%), Gaps:1/96(1%) Query 1 AAAFSGQTVKDLLNNKNKDRGGC-FKCGKKGHFAKDCRDHSNKNPESKVPGLCPRCKRGK 59 AAAFSGQTVKD LNNKNK++GGC FKCG+KGHFAK+C +H + N E+K PGLCPRCKRGK Sbjct 527 AAAFSGQTVKDFLNNKNKEKGGCCFKCGRKGHFAKNCHEHIHNNSETKAPGLCPRCKRGK 586 Query 60 HWANECKSKTDSQGNPLPPHQGNGMRGQPQAPKQAY 95 HWANECKSKTDSQGNPLPPHQGNG+RGQPQAPKQAY Sbjct 587 HWANECKSKTDSQGNPLPPHQGNGLRGQPQAPKQAY 622 >RecName: Full=Gag polyprotein; AltName: Full=Core polyprotein; AltName: Full=Pr78; Contains: RecName: Full=Matrix protein p10; Contains: RecName: Full=Phosphorylated protein pp24; Contains: RecName: Full=Phosphorylated protein pp18; Contains: RecName: Full=p12; Contains: RecName: Full=Capsid protein p27; Contains: RecName: Full=Nucleocapsid protein p14; Contains: RecName: Full=p4 [Mason-Pfizer monkey virus] Sequence ID: P07567.3 Length: 657 Range 1: 526 to 621 Score:172 bits(437), Expect:3e-51, Method:Compositional matrix adjust., Identities:81/96(84%), Positives:89/96(92%), Gaps:1/96(1%) Query 1 AAAFSGQTVKDLLNNKNKDRGGC-FKCGKKGHFAKDCRDHSNKNPESKVPGLCPRCKRGK 59 AAAFSGQTVKD LNNKNK++GGC FKCGKKGHFAK+C +H++ N E KVPGLCPRCKRGK Sbjct 526 AAAFSGQTVKDFLNNKNKEKGGCCFKCGKKGHFAKNCHEHAHNNAEPKVPGLCPRCKRGK 585 Query 60 HWANECKSKTDSQGNPLPPHQGNGMRGQPQAPKQAY 95 HWANECKSKTD+QGNP+PPHQGNG RGQPQAPKQAY Sbjct 586 HWANECKSKTDNQGNPIPPHQGNGWRGQPQAPKQAY 621 >RecName: Full=Gag-Pro-Pol polyprotein; AltName: Full=Pr180; Contains: RecName: Full=Matrix protein p10; Contains: RecName: Full=Phosphorylated protein pp24; Contains: RecName: Full=Phosphorylated protein pp18; Contains: RecName: Full=p12; Contains: RecName: Full=Capsid protein p27; Contains: RecName: Full=Nucleocapsid protein-dUTPase; Short=NC-dUTPase; Contains: RecName: Full=Protease 17 kDa; Contains: RecName: Full=Protease 13 kDa; Contains: RecName: Full=G-patch peptide; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; Short=RT; Contains: RecName: Full=Integrase; Short=IN [Mason-Pfizer monkey virus] Sequence ID: P07572.2 Length: 1771 Range 1: 526 to 620 Score:152 bits(385), Expect:2e-43, Method:Compositional matrix adjust., Identities:71/95(75%), Positives:82/95(86%), Gaps:1/95(1%) Query 1 AAAFSGQTVKDLLNNKNKDRGGC-FKCGKKGHFAKDCRDHSNKNPESKVPGLCPRCKRGK 59 AAAFSGQTVKD LNNKNK++GGC FKCGKKGHFAK+C +H++ N E KVPGLCPRCKRGK Sbjct 526 AAAFSGQTVKDFLNNKNKEKGGCCFKCGKKGHFAKNCHEHAHNNAEPKVPGLCPRCKRGK 585 Query 60 HWANECKSKTDSQGNPLPPHQGNGMRGQPQAPKQA 94 HWANECKSKTD+QGNP+PPHQGN + G P+ + Sbjct 586 HWANECKSKTDNQGNPIPPHQGNRVEGPAPGPETS 620 >RecName: Full=Gag-Pro-Pol polyprotein; Contains: RecName: Full=Matrix protein p10; Contains: RecName: Full=Phosphorylated protein pp24; Contains: RecName: Full=Phosphorylated protein pp18; Contains: RecName: Full=p12; Contains: RecName: Full=Capsid protein p27; Contains: RecName: Full=Nucleocapsid protein-dUTPase; Short=NC-dUTPase; Contains: RecName: Full=Protease 17 kDa; Contains: RecName: Full=Protease 13 kDa; Contains: RecName: Full=G-patch peptide; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; Short=RT; Contains: RecName: Full=Integrase; Short=IN [Simian retrovirus 1] Sequence ID: P04025.2 Length: 1772 Range 1: 527 to 621 Score:152 bits(383), Expect:4e-43, Method:Compositional matrix adjust., Identities:71/95(75%), Positives:80/95(84%), Gaps:1/95(1%) Query 1 AAAFSGQTVKDLLNNKNKDRGGC-FKCGKKGHFAKDCRDHSNKNPESKVPGLCPRCKRGK 59 AAAFSGQTVKD LNNKNK++GGC FKCG+KGHFAK+C +H + N E+K PGLCPRCKRGK Sbjct 527 AAAFSGQTVKDFLNNKNKEKGGCCFKCGRKGHFAKNCHEHIHNNSETKAPGLCPRCKRGK 586 Query 60 HWANECKSKTDSQGNPLPPHQGNGMRGQPQAPKQA 94 HWANECKSKTDSQGNPLPPHQGN G P+ + Sbjct 587 HWANECKSKTDSQGNPLPPHQGNRTEGPAPGPETS 621 >RecName: Full=Gag-Pro polyprotein; AltName: Full=Pr95; Contains: RecName: Full=Matrix protein p10; Contains: RecName: Full=Phosphorylated protein pp24; Contains: RecName: Full=Phosphorylated protein pp18; Contains: RecName: Full=p12; Contains: RecName: Full=Capsid protein p27; Contains: RecName: Full=Nucleocapsid protein-dUTPase; Short=NC-dUTPase; Contains: RecName: Full=Protease 17 kDa; Contains: RecName: Full=Protease 13 kDa; Contains: RecName: Full=G-patch peptide [Mason-Pfizer monkey virus] Sequence ID: P07570.2 Length: 911 Range 1: 526 to 621 Score:151 bits(382), Expect:5e-43, Method:Compositional matrix adjust., Identities:71/96(74%), Positives:82/96(85%), Gaps:1/96(1%) Query 1 AAAFSGQTVKDLLNNKNKDRGGC-FKCGKKGHFAKDCRDHSNKNPESKVPGLCPRCKRGK 59 AAAFSGQTVKD LNNKNK++GGC FKCGKKGHFAK+C +H++ N E KVPGLCPRCKRGK Sbjct 526 AAAFSGQTVKDFLNNKNKEKGGCCFKCGKKGHFAKNCHEHAHNNAEPKVPGLCPRCKRGK 585 Query 60 HWANECKSKTDSQGNPLPPHQGNGMRGQPQAPKQAY 95 HWANECKSKTD+QGNP+PPHQGN + G P+ + Sbjct 586 HWANECKSKTDNQGNPIPPHQGNRVEGPAPGPETSL 621 >RecName: Full=Gag-Pro polyprotein; Contains: RecName: Full=Matrix protein p10; Contains: RecName: Full=Phosphorylated protein pp24; Contains: RecName: Full=Phosphorylated protein pp18; Contains: RecName: Full=p12; Contains: RecName: Full=Capsid protein p27; Contains: RecName: Full=Nucleocapsid protein-dUTPase; Short=NC-dUTPase; Contains: RecName: Full=Protease 17 kDa; Contains: RecName: Full=Protease 13 kDa; Contains: RecName: Full=G-patch peptide [Simian retrovirus 1] Sequence ID: P04024.2 Length: 912 Range 1: 527 to 621 Score:150 bits(379), Expect:1e-42, Method:Compositional matrix adjust., Identities:71/95(75%), Positives:80/95(84%), Gaps:1/95(1%) Query 1 AAAFSGQTVKDLLNNKNKDRGGC-FKCGKKGHFAKDCRDHSNKNPESKVPGLCPRCKRGK 59 AAAFSGQTVKD LNNKNK++GGC FKCG+KGHFAK+C +H + N E+K PGLCPRCKRGK Sbjct 527 AAAFSGQTVKDFLNNKNKEKGGCCFKCGRKGHFAKNCHEHIHNNSETKAPGLCPRCKRGK 586 Query 60 HWANECKSKTDSQGNPLPPHQGNGMRGQPQAPKQA 94 HWANECKSKTDSQGNPLPPHQGN G P+ + Sbjct 587 HWANECKSKTDSQGNPLPPHQGNRTEGPAPGPETS 621 >RecName: Full=Gag polyprotein; AltName: Full=Core polyprotein; Contains: RecName: Full=Matrix protein p10; Contains: RecName: Full=Phosphorylated protein pp24; Contains: RecName: Full=p12; Contains: RecName: Full=Capsid protein p27; Contains: RecName: Full=Nucleocapsid protein p14; Contains: RecName: Full=p4 [Jaagsiekte sheep retrovirus] Sequence ID: P31622.1 Length: 612 Range 1: 478 to 579 Score:98.2 bits(243), Expect:3e-24, Method:Compositional matrix adjust., Identities:52/104(50%), Positives:65/104(62%), Gaps:11/104(10%) Query 1 AAAFSGQTVKDLL---NNKNKD------RGGCFKCGKKGHFAKDCRDHSNKNPESKVPGL 51 AAA G+++K++L +NK GCF CG+ GH A C + + P L Sbjct 478 AAALQGKSIKEVLFQQQARNKKGLQKSGNSGCFVCGQPGHRAAVCPQKHQTSVNT--PNL 535 Query 52 CPRCKRGKHWANECKSKTDSQGNPLPPHQGNGMRGQPQAPKQAY 95 CPRCK+GKHWA +C+SKTD QGNPLPP GN +RGQP APKQ Y Sbjct 536 CPRCKKGKHWARDCRSKTDVQGNPLPPVSGNWVRGQPLAPKQCY 579 >RecName: Full=Gag-Pro-Pol polyprotein; Contains: RecName: Full=Matrix protein p10; Contains: RecName: Full=Phosphorylated protein pp21; Contains: RecName: Full=Protein p3; Contains: RecName: Full=Protein p8; Contains: RecName: Full=Protein n; Contains: RecName: Full=Capsid protein p27; Contains: RecName: Full=Nucleocapsid protein-dUTPase; Short=NC-dUTPase; Contains: RecName: Full=Protease; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; Short=RT; Contains: RecName: Full=Integrase; Short=IN [Mouse mammary tumor virus (STRAIN BR6)] Sequence ID: P03365.3 Length: 1755 Range 1: 527 to 601 Score:88.6 bits(218), Expect:7e-21, Method:Composition-based stats., Identities:40/77(52%), Positives:48/77(62%), Gaps:8/77(10%) Query 23 CFKCGKKGHFAKDCRDHSNKNPESKVPGLCPRCKRGKHWANECKSKTDSQGNPLPPHQGN 82 CF CGK GH KDC+D K + PGLCPRCK+G HW +ECKSK D GNPLPP + N Sbjct 527 CFSCGKTGHIRKDCKDE--KGSKRAPPGLCPRCKKGYHWKSECKSKFDKDGNPLPPLETN 584 Query 83 G------MRGQPQAPKQ 93 ++GQ +P Q Sbjct 585 AENSKNLVKGQSPSPAQ 601 >RecName: Full=Gag-Pro-Pol polyprotein; Contains: RecName: Full=Matrix protein p10; Contains: RecName: Full=Phosphorylated protein; Contains: RecName: Full=p12; Contains: RecName: Full=Capsid protein p27; Contains: RecName: Full=Nucleocapsid protein-dUTPase; Short=NC-dUTPase; Contains: RecName: Full=Protease 17 kDa; Contains: RecName: Full=Protease 13 kDa; Contains: RecName: Full=G-patch peptide; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; Short=RT; Contains: RecName: Full=Integrase; Short=IN [Jaagsiekte sheep retrovirus] Sequence ID: P31623.2 Length: 1726 Range 1: 478 to 576 Score:87.8 bits(216), Expect:1e-20, Method:Composition-based stats., Identities:45/101(45%), Positives:58/101(57%), Gaps:11/101(10%) Query 1 AAAFSGQTVKDLL---NNKNKD------RGGCFKCGKKGHFAKDCRDHSNKNPESKVPGL 51 AAA G+++K++L +NK GCF CG+ GH A C + + P L Sbjct 478 AAALQGKSIKEVLFQQQARNKKGLQKSGNSGCFVCGQPGHRAAVCPQKHQTSVNT--PNL 535 Query 52 CPRCKRGKHWANECKSKTDSQGNPLPPHQGNGMRGQPQAPK 92 CPRCK+GKHWA +C+SKTD QGNPLPP GN G P+ Sbjct 536 CPRCKKGKHWARDCRSKTDVQGNPLPPVSGNLGEGPAPGPE 576 >RecName: Full=Gag-Pro polyprotein; Contains: RecName: Full=Matrix protein p10; Contains: RecName: Full=Phosphorylated protein pp21; Contains: RecName: Full=Protein p3; Contains: RecName: Full=Protein p8; Contains: RecName: Full=Protein n; Contains: RecName: Full=Capsid protein p27; Contains: RecName: Full=Nucleocapsid protein-dUTPase; Short=NC-dUTPase; Contains: RecName: Full=Protease [Mouse mammary tumor virus (STRAIN BR6)] Sequence ID: P10271.2 Length: 860 Range 1: 527 to 601 Score:86.7 bits(213), Expect:3e-20, Method:Composition-based stats., Identities:40/77(52%), Positives:48/77(62%), Gaps:8/77(10%) Query 23 CFKCGKKGHFAKDCRDHSNKNPESKVPGLCPRCKRGKHWANECKSKTDSQGNPLPPHQGN 82 CF CGK GH KDC+D K + PGLCPRCK+G HW +ECKSK D GNPLPP + N Sbjct 527 CFSCGKTGHIRKDCKDE--KGSKRAPPGLCPRCKKGYHWKSECKSKFDKDGNPLPPLETN 584 Query 83 G------MRGQPQAPKQ 93 ++GQ +P Q Sbjct 585 AENSKNLVKGQSPSPAQ 601 >RecName: Full=Gag-Pro-Pol polyprotein; Contains: RecName: Full=Matrix protein p10; Contains: RecName: Full=Phosphorylated protein pp21; Contains: RecName: Full=Protein p3; Contains: RecName: Full=Protein p8; Contains: RecName: Full=Protein n; Contains: RecName: Full=Capsid protein p27; Contains: RecName: Full=Nucleocapsid protein-dUTPase; Short=NC-dUTPase; Contains: RecName: Full=Protease; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; Short=RT; Contains: RecName: Full=Integrase; Short=IN [Mouse mammary tumor virus (STRAIN C3H)] Sequence ID: P11283.2 Length: 1755 Range 1: 527 to 601 Score:85.9 bits(211), Expect:5e-20, Method:Composition-based stats., Identities:38/77(49%), Positives:48/77(62%), Gaps:8/77(10%) Query 23 CFKCGKKGHFAKDCRDHSNKNPESKVPGLCPRCKRGKHWANECKSKTDSQGNPLPPHQGN 82 CF CGK GH +DC++ K + PGLCPRCK+G HW +ECKSK D GNPLPP + N Sbjct 527 CFSCGKTGHIKRDCKEE--KGSKRAPPGLCPRCKKGYHWKSECKSKFDKDGNPLPPLETN 584 Query 83 G------MRGQPQAPKQ 93 ++GQ +P Q Sbjct 585 AENSKNLVKGQSPSPTQ 601 >RecName: Full=Gag-Pro polyprotein; Contains: RecName: Full=Matrix protein p10; Contains: RecName: Full=Phosphorylated protein pp21; Contains: RecName: Full=Protein p3; Contains: RecName: Full=Protein p8; Contains: RecName: Full=Protein n; Contains: RecName: Full=Capsid protein p27; Contains: RecName: Full=Nucleocapsid protein-dUTPase; Short=NC-dUTPase; Contains: RecName: Full=Protease [Mouse mammary tumor virus (STRAIN C3H)] Sequence ID: Q9IZT2.1 Length: 860 Range 1: 527 to 601 Score:84.0 bits(206), Expect:3e-19, Method:Composition-based stats., Identities:38/77(49%), Positives:48/77(62%), Gaps:8/77(10%) Query 23 CFKCGKKGHFAKDCRDHSNKNPESKVPGLCPRCKRGKHWANECKSKTDSQGNPLPPHQGN 82 CF CGK GH +DC++ K + PGLCPRCK+G HW +ECKSK D GNPLPP + N Sbjct 527 CFSCGKTGHIKRDCKEE--KGSKRAPPGLCPRCKKGYHWKSECKSKFDKDGNPLPPLETN 584 Query 83 G------MRGQPQAPKQ 93 ++GQ +P Q Sbjct 585 AENSKNLVKGQSPSPTQ 601 >RecName: Full=Gag polyprotein; Contains: RecName: Full=Matrix protein p10; Contains: RecName: Full=Phosphorylated protein pp21; Contains: RecName: Full=Protein p3; Contains: RecName: Full=Protein p8; Contains: RecName: Full=Protein n; Contains: RecName: Full=Capsid protein p27; Contains: RecName: Full=Nucleocapsid protein p14 [Mouse mammary tumor virus (STRAIN BR6)] Sequence ID: P10258.3 Length: 591 Range 1: 527 to 585 Score:83.2 bits(204), Expect:5e-19, Method:Composition-based stats., Identities:36/61(59%), Positives:41/61(67%), Gaps:2/61(3%) Query 23 CFKCGKKGHFAKDCRDHSNKNPESKVPGLCPRCKRGKHWANECKSKTDSQGNPLPPHQGN 82 CF CGK GH KDC+D K + PGLCPRCK+G HW +ECKSK D GNPLPP + N Sbjct 527 CFSCGKTGHIRKDCKDE--KGSKRAPPGLCPRCKKGYHWKSECKSKFDKDGNPLPPLETN 584 Query 83 G 83 Sbjct 585 A 585 >RecName: Full=Gag-Pro polyprotein; Contains: RecName: Full=Matrix protein p10; Contains: RecName: Full=Phosphorylated protein; Contains: RecName: Full=p12; Contains: RecName: Full=Capsid protein p27; Contains: RecName: Full=Nucleocapsid protein-dUTPase; Short=NC-dUTPase; Contains: RecName: Full=Protease 17 kDa; Contains: RecName: Full=Protease 13 kDa; Contains: RecName: Full=G-patch peptide [Jaagsiekte sheep retrovirus] Sequence ID: P31625.3 Length: 866 Range 1: 478 to 566 Score:80.5 bits(197), Expect:5e-18, Method:Compositional matrix adjust., Identities:43/91(47%), Positives:55/91(60%), Gaps:11/91(12%) Query 1 AAAFSGQTVKDLL------NNKNKDRGG---CFKCGKKGHFAKDCRDHSNKNPESKVPGL 51 AAA G+++K++L N K + G CF CG+ GH A C + + P L Sbjct 478 AAALQGKSIKEVLFQQQARNKKGLQKSGNSGCFVCGQPGHRAAVCPQKHQTSVNT--PNL 535 Query 52 CPRCKRGKHWANECKSKTDSQGNPLPPHQGN 82 CPRCK+GKHWA +C+SKTD QGNPLPP GN Sbjct 536 CPRCKKGKHWARDCRSKTDVQGNPLPPVSGN 566 >RecName: Full=Gag polyprotein; Contains: RecName: Full=Matrix protein p10; Contains: RecName: Full=Phosphorylated protein pp21; Contains: RecName: Full=Protein p3; Contains: RecName: Full=Protein p8; Contains: RecName: Full=Protein n; Contains: RecName: Full=Capsid protein p27; Contains: RecName: Full=Nucleocapsid protein p14 [Mouse mammary tumor virus (STRAIN C3H)] Sequence ID: P11284.3 Length: 591 Range 1: 527 to 585 Score:78.2 bits(191), Expect:3e-17, Method:Compositional matrix adjust., Identities:35/63(56%), Positives:42/63(66%), Gaps:6/63(9%) Query 23 CFKCGKKGHFAKDCRDH--SNKNPESKVPGLCPRCKRGKHWANECKSKTDSQGNPLPPHQ 80 CF CGK GH +DC++ S + P PGLCPRCK+G HW +ECKSK D GNPLPP + Sbjct 527 CFSCGKTGHIKRDCKEEKGSKRAP----PGLCPRCKKGYHWKSECKSKFDKDGNPLPPLE 582 Query 81 GNG 83 N Sbjct 583 TNA 585 >RecName: Full=Endogenous retrovirus group K member 9 Pol protein; AltName: Full=HERV-K(C6) Gag-Pol protein; AltName: Full=HERV-K109 Gag-Pol protein; AltName: Full=HERV-K_6q14.1 provirus ancestral Gag-Pol polyprotein; Includes: RecName: Full=Protease; AltName: Full=PR; AltName: Full=Retropepsin; Includes: RecName: Full=Reverse transcriptase/ribonuclease H; AltName: Full=p66 RT [Homo sapiens] Sequence ID: P63128.3 Length: 1117 Range 1: 544 to 621 Score:74.7 bits(182), Expect:5e-16, Method:Compositional matrix adjust., Identities:38/81(47%), Positives:49/81(60%), Gaps:10/81(12%) Query 21 GGCFKCGKKGHFAKDCRDHSNKNPESKV-------PGLCPRCKRGKHWANECKSKTDSQG 73 G C+ CG+ GH K+C + +N + P LCPRCK+GKHWA++C+SK D G Sbjct 544 GKCYNCGQIGHLKKNCPVLNKQNITIQATTTGREPPDLCPRCKKGKHWASQCRSKFDKNG 603 Query 74 NPLPPHQGNGMRGQPQAPKQA 94 PL GN RGQPQAP+Q Sbjct 604 QPL---SGNEQRGQPQAPQQT 621 >RecName: Full=Endogenous retrovirus group K member 19 Gag polyprotein; AltName: Full=HERV-K(C19) Gag protein; AltName: Full=HERV-K_19q11 provirus ancestral Gag polyprotein; Short=Gag polyprotein [Homo sapiens] Sequence ID: Q9YNA8.3 Length: 666 Range 1: 544 to 621 Score:74.7 bits(182), Expect:5e-16, Method:Compositional matrix adjust., Identities:38/81(47%), Positives:49/81(60%), Gaps:10/81(12%) Query 21 GGCFKCGKKGHFAKDCRDHSNKNPESKV-------PGLCPRCKRGKHWANECKSKTDSQG 73 G C+ CG+ GH K+C + +N + P LCPRCK+GKHWA++C+SK D G Sbjct 544 GKCYNCGQIGHLKKNCPVLNKQNITIQATTTGREPPDLCPRCKKGKHWASQCRSKFDKNG 603 Query 74 NPLPPHQGNGMRGQPQAPKQA 94 PL GN RGQPQAP+Q Sbjct 604 QPL---SGNEQRGQPQAPQQT 621 >RecName: Full=Endogenous retrovirus group K member 10 Gag polyprotein; AltName: Full=HERV-K10 Gag protein; AltName: Full=HERV-K107 Gag protein; AltName: Full=HERV-K_5q33.3 provirus ancestral Gag polyprotein; Short=Gag polyprotein [Homo sapiens] Sequence ID: P87889.4 Length: 666 Range 1: 544 to 621 Score:74.7 bits(182), Expect:5e-16, Method:Compositional matrix adjust., Identities:38/81(47%), Positives:49/81(60%), Gaps:10/81(12%) Query 21 GGCFKCGKKGHFAKDCRDHSNKNPESKV-------PGLCPRCKRGKHWANECKSKTDSQG 73 G C+ CG+ GH K+C + +N + P LCPRCK+GKHWA++C+SK D G Sbjct 544 GKCYNCGQIGHLKKNCPVLNKQNITIQATTTGREPPDLCPRCKKGKHWASQCRSKFDKNG 603 Query 74 NPLPPHQGNGMRGQPQAPKQA 94 PL GN RGQPQAP+Q Sbjct 604 QPL---SGNEQRGQPQAPQQT 621 >RecName: Full=Endogenous retrovirus group K member 24 Gag polyprotein; AltName: Full=HERV-K101 Gag protein; AltName: Full=HERV-K_22q11.21 provirus ancestral Gag polyprotein; Short=Gag polyprotein [Homo sapiens] Sequence ID: P63145.2 Length: 666 Range 1: 544 to 621 Score:74.3 bits(181), Expect:6e-16, Method:Compositional matrix adjust., Identities:38/81(47%), Positives:49/81(60%), Gaps:10/81(12%) Query 21 GGCFKCGKKGHFAKDCRDHSNKNPESKV-------PGLCPRCKRGKHWANECKSKTDSQG 73 G C+ CG+ GH K+C + +N + P LCPRCK+GKHWA++C+SK D G Sbjct 544 GKCYNCGQIGHLKKNCPVLNKQNITIQATTTGREPPDLCPRCKKGKHWASQCRSKFDKNG 603 Query 74 NPLPPHQGNGMRGQPQAPKQA 94 PL GN RGQPQAP+Q Sbjct 604 QPL---SGNEQRGQPQAPQQT 621 >RecName: Full=Endogenous retrovirus group K member 9 Gag polyprotein; AltName: Full=HERV-K(C6) Gag protein; AltName: Full=HERV-K109 Gag protein; AltName: Full=HERV-K_6q14.1 provirus ancestral Gag polyprotein; Short=Gag polyprotein [Homo sapiens] Sequence ID: P63126.2 Length: 666 Range 1: 544 to 621 Score:74.3 bits(181), Expect:6e-16, Method:Compositional matrix adjust., Identities:38/81(47%), Positives:49/81(60%), Gaps:10/81(12%) Query 21 GGCFKCGKKGHFAKDCRDHSNKNPESKV-------PGLCPRCKRGKHWANECKSKTDSQG 73 G C+ CG+ GH K+C + +N + P LCPRCK+GKHWA++C+SK D G Sbjct 544 GKCYNCGQIGHLKKNCPVLNKQNITIQATTTGREPPDLCPRCKKGKHWASQCRSKFDKNG 603 Query 74 NPLPPHQGNGMRGQPQAPKQA 94 PL GN RGQPQAP+Q Sbjct 604 QPL---SGNEQRGQPQAPQQT 621 >RecName: Full=Endogenous retrovirus group K member 7 Gag polyprotein; AltName: Full=HERV-K(III) Gag protein; AltName: Full=HERV-K102 Gag protein; AltName: Full=HERV-K_1q22 provirus ancestral Gag polyprotein; Short=Gag polyprotein [Homo sapiens] Sequence ID: P63130.2 Length: 666 Range 1: 544 to 621 Score:74.3 bits(181), Expect:6e-16, Method:Compositional matrix adjust., Identities:38/81(47%), Positives:49/81(60%), Gaps:10/81(12%) Query 21 GGCFKCGKKGHFAKDCRDHSNKNPESKV-------PGLCPRCKRGKHWANECKSKTDSQG 73 G C+ CG+ GH K+C + +N + P LCPRCK+GKHWA++C+SK D G Sbjct 544 GKCYNCGQIGHLKKNCPVLNKQNITIQATTTGREPPDLCPRCKKGKHWASQCRSKFDKNG 603 Query 74 NPLPPHQGNGMRGQPQAPKQA 94 PL GN RGQPQAP+Q Sbjct 604 QPL---SGNEQRGQPQAPQQT 621 >RecName: Full=Endogenous retrovirus group K member 113 Gag polyprotein; AltName: Full=HERV-K113 Gag protein; AltName: Full=HERV-K_19p13.11 provirus ancestral Gag polyprotein; Short=Gag polyprotein [Homo sapiens] Sequence ID: P62684.2 Length: 666 Range 1: 544 to 621 Score:74.3 bits(181), Expect:6e-16, Method:Compositional matrix adjust., Identities:38/81(47%), Positives:49/81(60%), Gaps:10/81(12%) Query 21 GGCFKCGKKGHFAKDCRDHSNKNPESKV-------PGLCPRCKRGKHWANECKSKTDSQG 73 G C+ CG+ GH K+C + +N + P LCPRCK+GKHWA++C+SK D G Sbjct 544 GKCYNCGQIGHLKKNCPVLNKQNITIQATTTGREPPDLCPRCKKGKHWASQCRSKFDKNG 603 Query 74 NPLPPHQGNGMRGQPQAPKQA 94 PL GN RGQPQAP+Q Sbjct 604 QPL---SGNEQRGQPQAPQQT 621 >RecName: Full=Endogenous retrovirus group K member 21 Gag polyprotein; AltName: Full=HERV-K_12q14.1 provirus ancestral Gag polyprotein; Short=Gag polyprotein [Homo sapiens] Sequence ID: P62683.2 Length: 666 Range 1: 544 to 621 Score:74.3 bits(181), Expect:6e-16, Method:Compositional matrix adjust., Identities:38/81(47%), Positives:49/81(60%), Gaps:10/81(12%) Query 21 GGCFKCGKKGHFAKDCRDHSNKNPESKV-------PGLCPRCKRGKHWANECKSKTDSQG 73 G C+ CG+ GH K+C + +N + P LCPRCK+GKHWA++C+SK D G Sbjct 544 GKCYNCGQIGHLKKNCPVLNKQNITIQATTTGREPPDLCPRCKKGKHWASQCRSKFDKNG 603 Query 74 NPLPPHQGNGMRGQPQAPKQA 94 PL GN RGQPQAP+Q Sbjct 604 QPL---SGNEQRGQPQAPQQT 621 >RecName: Full=Endogenous retrovirus group K member 8 Gag polyprotein; AltName: Full=HERV-K115 Gag protein; AltName: Full=HERV-K_8p23.1 provirus ancestral Gag polyprotein; Short=Gag polyprotein [Homo sapiens] Sequence ID: P62685.2 Length: 647 Range 1: 544 to 621 Score:74.3 bits(181), Expect:7e-16, Method:Compositional matrix adjust., Identities:38/81(47%), Positives:49/81(60%), Gaps:10/81(12%) Query 21 GGCFKCGKKGHFAKDCRDHSNKNPESKV-------PGLCPRCKRGKHWANECKSKTDSQG 73 G C+ CG+ GH K+C + +N + P LCPRCK+GKHWA++C+SK D G Sbjct 544 GKCYNCGQIGHLKKNCPVLNKQNITIQATTTGREPPDLCPRCKKGKHWASQCRSKFDKNG 603 Query 74 NPLPPHQGNGMRGQPQAPKQA 94 PL GN RGQPQAP+Q Sbjct 604 QPL---SGNEQRGQPQAPQQT 621 >RecName: Full=Endogenous retrovirus group K member 6 Gag polyprotein; AltName: Full=HERV-K(C7) Gag protein; AltName: Full=HERV-K(HML-2.HOM) Gag protein; AltName: Full=HERV-K108 Gag protein; AltName: Full=HERV-K_7p22.1 provirus ancestral Gag polyprotein; Short=Gag polyprotein [Homo sapiens] Sequence ID: Q7LDI9.3 Length: 666 Range 1: 546 to 621 Score:73.2 bits(178), Expect:2e-15, Method:Compositional matrix adjust., Identities:37/79(47%), Positives:48/79(60%), Gaps:10/79(12%) Query 23 CFKCGKKGHFAKDCRDHSNKNPESKV-------PGLCPRCKRGKHWANECKSKTDSQGNP 75 C+ CG+ GH K+C + +N + P LCPRCK+GKHWA++C+SK D G P Sbjct 546 CYNCGQIGHLKKNCPVLNKQNITIQATTTGREPPDLCPRCKKGKHWASQCRSKFDKNGQP 605 Query 76 LPPHQGNGMRGQPQAPKQA 94 L GN RGQPQAP+Q Sbjct 606 L---SGNEQRGQPQAPQQT 621 >RecName: Full=Endogenous retrovirus group K member 5 Gag polyprotein; AltName: Full=HERV-K(II) Gag protein; AltName: Full=HERV-K_3q12.3 provirus ancestral Gag polyprotein; Short=Gag polyprotein [Homo sapiens] Sequence ID: Q9HDB9.3 Length: 667 Range 1: 545 to 621 Score:66.6 bits(161), Expect:3e-13, Method:Compositional matrix adjust., Identities:36/80(45%), Positives:46/80(57%), Gaps:11/80(13%) Query 23 CFKCGKKGHFAKDCRDHSNKNPES--------KVPGLCPRCKRGKHWANECKSKTDSQGN 74 C+ CG+ GH + C + +N + K GLCP+C +GKHWAN+C SK D G Sbjct 545 CYNCGQIGHLKRSCPVLNKQNIINQAITAKNKKPSGLCPKCGKGKHWANQCHSKFDKDGQ 604 Query 75 PLPPHQGNGMRGQPQAPKQA 94 PL GN RGQPQAP+Q Sbjct 605 PL---SGNRKRGQPQAPQQT 621 >RecName: Full=Gag polyprotein; AltName: Full=Core polyprotein; AltName: Full=Pr72; Contains: RecName: Full=Matrix protein p19; Contains: RecName: Full=Core protein p16; Contains: RecName: Full=Capsid protein p35; AltName: Full=Capsid protein p34; Contains: RecName: Full=Probable nucleocapsid protein p10 [Squirrel monkey retrovirus] Sequence ID: P21411.3 Length: 740 Range 1: 649 to 687 Score:52.8 bits(125), Expect:2e-08, Method:Compositional matrix adjust., Identities:24/40(60%), Positives:29/40(72%), Gaps:1/40(2%) Query 52 CPRCKRGKHWANECKSKTDSQGNPLPPHQGNGMRGQPQAP 91 CPRCK+G HWA+EC+S+ D G P+ QGN RGQPQ P Sbjct 649 CPRCKKGFHWASECRSRLDINGQPI-IKQGNLNRGQPQGP 687 >RecName: Full=Intracisternal A-particle Gag-related polyprotein; Contains: RecName: Full=Phosphorylated protein; Contains: RecName: Full=Capsid protein; Contains: RecName: Full=Nucleocapsid protein; Contains: RecName: Full=Protease; Flags: Precursor [Mouse intracisternal A-particle MIA14] Sequence ID: P11365.2 Length: 827 Range 1: 444 to 512 Score:52.4 bits(124), Expect:4e-08, Method:Compositional matrix adjust., Identities:28/72(39%), Positives:41/72(56%), Gaps:8/72(11%) Query 12 LLNNKNK-----DRGGCFKCGKKGHFAKDCRDHSNKNPESKVPGLCPRCKRGKHWANECK 66 +L ++N+ D+ CF CGK GHF KDCR + + LC +C +G H A++C+ Sbjct 444 ILQSQNRSMSRNDQRTCFNCGKPGHFKKDCR---APDKQGGTLTLCSKCGKGYHRADQCR 500 Query 67 SKTDSQGNPLPP 78 S D +G LPP Sbjct 501 SVRDIKGRVLPP 512 >RecName: Full=Gag-Pro-Pol polyprotein; Contains: RecName: Full=Matrix protein p19; Contains: RecName: Full=Core protein p16; Contains: RecName: Full=Capsid protein p35; AltName: Full=Capsid protein p34; Contains: RecName: Full=Probable nucleocapsid protein-dUTPase; Short=NC-dUTPase; Contains: RecName: Full=Protease 17 kDa; Contains: RecName: Full=Protease 13 kDa; Contains: RecName: Full=G-patch peptide; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; Short=RT; Contains: RecName: Full=Integrase; Short=IN [Squirrel monkey retrovirus] Sequence ID: P03364.3 Length: 1880 Range 1: 642 to 687 Score:46.2 bits(108), Expect:6e-06, Method:Composition-based stats., Identities:23/51(45%), Positives:30/51(58%), Gaps:5/51(9%) Query 41 NKNPESKVPGLCPRCKRGKHWANECKSKTDSQGNPLPPHQGNGMRGQPQAP 91 N P +K CPRCK+G HWA+EC+S+ D G P+ QGN +G P Sbjct 642 NLGPTTK----CPRCKKGFHWASECRSRLDINGQPI-IKQGNLEQGPAPGP 687 >RecName: Full=Gag-Pro polyprotein; Contains: RecName: Full=Matrix protein p19; Contains: RecName: Full=Core protein p16; Contains: RecName: Full=Capsid protein p35; AltName: Full=Capsid protein p34; Contains: RecName: Full=Probable nucleocapsid protein-dUTPase; Short=NC-dUTPase; Contains: RecName: Full=Protease 17 kDa; Contains: RecName: Full=Protease 13 kDa; Contains: RecName: Full=G-patch peptide [Squirrel monkey retrovirus] Sequence ID: P21407.2 Length: 998 Range 1: 649 to 687 Score:44.7 bits(104), Expect:2e-05, Method:Composition-based stats., Identities:20/40(50%), Positives:26/40(65%), Gaps:1/40(2%) Query 52 CPRCKRGKHWANECKSKTDSQGNPLPPHQGNGMRGQPQAP 91 CPRCK+G HWA+EC+S+ D G P+ QGN +G P Sbjct 649 CPRCKKGFHWASECRSRLDINGQPI-IKQGNLEQGPAPGP 687 >RecName: Full=ATP-dependent RNA helicase glh-4; AltName: Full=Germline helicase 4 [Caenorhabditis elegans] Sequence ID: O76743.2 Length: 1156 Range 1: 638 to 695 Score:43.9 bits(102), Expect:3e-05, Method:Compositional matrix adjust., Identities:26/61(43%), Positives:34/61(55%), Gaps:4/61(6%) Query 20 RGGCFKCGKKGHFAKDCRDHSNKNPESKVPGLCPRCKRGKHWANECKSK-TDSQGNPLPP 78 RG C CG++GHFAKDC++ + E P C RC HW EC ++ D QGN L Sbjct 638 RGPCRNCGQEGHFAKDCQNERVRM-EPTEP--CRRCAEEGHWGYECPTRPKDLQGNFLES 694 Query 79 H 79 + Sbjct 695 Y 695 >RecName: Full=Intracisternal A-particle Gag-related polyprotein; Contains: RecName: Full=Matrix protein; Contains: RecName: Full=Phosphorylated protein; Contains: RecName: Full=Capsid protein; Contains: RecName: Full=Nucleocapsid protein; Contains: RecName: Full=Protease [Golden hamster intracisternal A-particle H18] Sequence ID: P04023.1 Length: 572 Range 1: 432 to 487 Score:43.5 bits(101), Expect:4e-05, Method:Compositional matrix adjust., Identities:27/65(42%), Positives:33/65(50%), Gaps:9/65(13%) Query 1 AAAFSGQTVKDLLNNKNKDRGGCFKCGKKGHFAKDCRDHSNKNPESKVPGLCPRCKRGKH 60 AA +DL N K CF CG+ GH KDC+ + ESK LC RC +G H Sbjct 432 AAILQTHRYRDLSNRK-----ACFNCGRMGHLKKDCQ-APERTRESK---LCYRCGKGYH 482 Query 61 WANEC 65 A+EC Sbjct 483 RASEC 487 >RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol; Contains: RecName: Full=Matrix protein p17; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Spacer peptide 1; Short=SP1; AltName: Full=p2; Contains: RecName: Full=Nucleocapsid protein p7; Short=NC; Contains: RecName: Full=Transframe peptide; Short=TF; Contains: RecName: Full=p6-pol; Short=p6*; Contains: RecName: Full=Protease; AltName: Full=PR; AltName: Full=Retropepsin; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; AltName: Full=Exoribonuclease H; AltName: Full=p66 RT; Contains: RecName: Full=p51 RT; Contains: RecName: Full=p15; Contains: RecName: Full=Integrase; Short=IN [HIV-1 M:B_ARV2/SF2] Sequence ID: P03369.3 Length: 1437 Range 1: 394 to 436 Score:39.7 bits(91), Expect:0.001, Method:Composition-based stats., Identities:22/54(41%), Positives:26/54(48%), Gaps:11/54(20%) Query 23 CFKCGKKGHFAKDCRDHSNKNPESKVPGLCPRCKRGKHWANECKSKTDSQGNPL 76 CF CGK+GH AK+CR K C RC R H +C T+ Q N L Sbjct 394 CFNCGKEGHIAKNCRAPRKKG--------CWRCGREGHQMKDC---TERQANFL 436 >RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol; Contains: RecName: Full=Matrix protein p17; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Spacer peptide 1; Short=SP1; AltName: Full=p2; Contains: RecName: Full=Nucleocapsid protein p7; Short=NC; Contains: RecName: Full=Transframe peptide; Short=TF; Contains: RecName: Full=p6-pol; Short=p6*; Contains: RecName: Full=Protease; AltName: Full=PR; AltName: Full=Retropepsin; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; AltName: Full=Exoribonuclease H; AltName: Full=p66 RT; Contains: RecName: Full=p51 RT; Contains: RecName: Full=p15; Contains: RecName: Full=Integrase; Short=IN [Human immunodeficiency virus type 1 (MAL ISOLATE)] Sequence ID: P04588.3 Length: 1440 Range 1: 389 to 440 Score:39.3 bits(90), Expect:0.002, Method:Composition-based stats., Identities:22/63(35%), Positives:30/63(47%), Gaps:11/63(17%) Query 14 NNKNKDRGGCFKCGKKGHFAKDCRDHSNKNPESKVPGLCPRCKRGKHWANECKSKTDSQG 73 N K + R CF CGK+GH A++CR K C +C + H +C T+ Q Sbjct 389 NFKGQKRIKCFNCGKEGHLARNCRAPRKKG--------CWKCGKEGHQMKDC---TERQA 437 Query 74 NPL 76 N L Sbjct 438 NFL 440 >RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol; Contains: RecName: Full=Matrix protein p17; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Nucleocapsid protein p7; Short=NC; Contains: RecName: Full=p6-pol; Short=p6*; Contains: RecName: Full=Protease; AltName: Full=PR; AltName: Full=Retropepsin; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; AltName: Full=Exoribonuclease H; AltName: Full=p66 RT; Contains: RecName: Full=p51 RT; Contains: RecName: Full=p15; Contains: RecName: Full=Integrase; Short=IN [SIVcpz TAN1] Sequence ID: Q8AII1.4 Length: 1462 Range 1: 419 to 461 Score:38.5 bits(88), Expect:0.003, Method:Composition-based stats., Identities:18/51(35%), Positives:25/51(49%), Gaps:8/51(15%) Query 23 CFKCGKKGHFAKDCRDHSNKNPESKVPGLCPRCKRGKHWANECKSKTDSQG 73 CF CGK GH A++CR K C RC + H +C ++ +S G Sbjct 419 CFNCGKVGHTARNCRAPRKKG--------CWRCGQEGHQMKDCTTRNNSTG 461 >RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol; Contains: RecName: Full=Matrix protein p17; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Spacer peptide 1; Short=SP1; AltName: Full=p2; Contains: RecName: Full=Nucleocapsid protein p7; Short=NC; Contains: RecName: Full=Transframe peptide; Short=TF; Contains: RecName: Full=p6-pol; Short=p6*; Contains: RecName: Full=Protease; AltName: Full=PR; AltName: Full=Retropepsin; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; AltName: Full=Exoribonuclease H; AltName: Full=p66 RT; Contains: RecName: Full=p51 RT; Contains: RecName: Full=p15; Contains: RecName: Full=Integrase; Short=IN [HIV-1 O_MVP5180] Sequence ID: Q79666.3 Length: 1446 Range 1: 376 to 432 Score:38.1 bits(87), Expect:0.003, Method:Composition-based stats., Identities:21/65(32%), Positives:31/65(47%), Gaps:11/65(16%) Query 6 GQTVKDLLNNKNKDRGG---CFKCGKKGHFAKDCRDHSNKNPESKVPGLCPRCKRGKHWA 62 G T + +N +R G CF CGK+GH AK+CR + C +C + H Sbjct 376 GYTAVFMQRGQNPNRKGPIKCFNCGKEGHIAKNCRAPRKRG--------CWKCGQEGHQM 427 Query 63 NECKS 67 +CK+ Sbjct 428 KDCKN 432 Range 2: 408 to 479 Score:35.4 bits(80), Expect:0.037, Method:Composition-based stats., Identities:22/81(27%), Positives:37/81(45%), Gaps:9/81(11%) Query 14 NNKNKDRGGCFKCGKKGHFAKDCRDHSNKNPESKVPGLCPRCKRGKHWANECKSKTDSQG 73 N + + GC+KCG++GH KDC++ N +V G H A + ++T Sbjct 408 NCRAPRKRGCWKCGQEGHQMKDCKNGRQANFFREV------LASGGHEARQLCAETSV-- 459 Query 74 NPLPPHQGNGMRGQPQAPKQA 94 P+ P G G G ++ + Sbjct 460 -PISPTNGGGSEGTRESESEG 479 >RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol; Contains: RecName: Full=Matrix protein p17; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Spacer peptide 1; Short=SP1; AltName: Full=p2; Contains: RecName: Full=Nucleocapsid protein p7; Short=NC; Contains: RecName: Full=Transframe peptide; Short=TF; Contains: RecName: Full=p6-pol; Short=p6*; Contains: RecName: Full=Protease; AltName: Full=PR; AltName: Full=Retropepsin; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; AltName: Full=Exoribonuclease H; AltName: Full=p66 RT; Contains: RecName: Full=p51 RT; Contains: RecName: Full=p15; Contains: RecName: Full=Integrase; Short=IN [Human immunodeficiency virus type 1 (OYI ISOLATE)] Sequence ID: P20892.3 Length: 1434 Range 1: 391 to 433 Score:38.1 bits(87), Expect:0.004, Method:Composition-based stats., Identities:21/54(39%), Positives:26/54(48%), Gaps:11/54(20%) Query 23 CFKCGKKGHFAKDCRDHSNKNPESKVPGLCPRCKRGKHWANECKSKTDSQGNPL 76 CF CGK+GH AK+CR K C +C R H +C T+ Q N L Sbjct 391 CFNCGKEGHIAKNCRAPRKKG--------CWKCGREGHQMKDC---TERQANFL 433 >RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol; Contains: RecName: Full=Matrix protein p17; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Spacer peptide 1; Short=SP1; AltName: Full=p2; Contains: RecName: Full=Nucleocapsid protein p7; Short=NC; Contains: RecName: Full=Transframe peptide; Short=TF; Contains: RecName: Full=p6-pol; Short=p6*; Contains: RecName: Full=Protease; AltName: Full=PR; AltName: Full=Retropepsin; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; AltName: Full=Exoribonuclease H; AltName: Full=p66 RT; Contains: RecName: Full=p51 RT; Contains: RecName: Full=p15; Contains: RecName: Full=Integrase; Short=IN [HIV-1 M:F1_93BR020] Sequence ID: O89290.3 Length: 1430 Range 1: 360 to 424 Score:37.7 bits(86), Expect:0.005, Method:Composition-based stats., Identities:23/73(32%), Positives:32/73(43%), Gaps:13/73(17%) Query 1 AAAFSGQTVKDLLNNKNKDRG-----GCFKCGKKGHFAKDCRDHSNKNPESKVPGLCPRC 55 A A S T ++ K+ +G CF CGK+GH AK+CR K C +C Sbjct 360 AEAMSQATNTAIMMQKSNFKGQRRIVKCFNCGKEGHIAKNCRAPRKKG--------CWKC 411 Query 56 KRGKHWANECKSK 68 R H +C + Sbjct 412 GREGHQMKDCTER 424 >RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol; Contains: RecName: Full=Matrix protein p17; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Spacer peptide 1; Short=SP1; AltName: Full=p2; Contains: RecName: Full=Nucleocapsid protein p7; Short=NC; Contains: RecName: Full=Transframe peptide; Short=TF; Contains: RecName: Full=p6-pol; Short=p6*; Contains: RecName: Full=Protease; AltName: Full=PR; AltName: Full=Retropepsin; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; AltName: Full=Exoribonuclease H; AltName: Full=p66 RT; Contains: RecName: Full=p51 RT; Contains: RecName: Full=p15; Contains: RecName: Full=Integrase; Short=IN [Human immunodeficiency virus type 1 (ELI ISOLATE)] Sequence ID: P04589.3 Length: 1435 Range 1: 393 to 435 Score:37.7 bits(86), Expect:0.005, Method:Composition-based stats., Identities:21/54(39%), Positives:26/54(48%), Gaps:11/54(20%) Query 23 CFKCGKKGHFAKDCRDHSNKNPESKVPGLCPRCKRGKHWANECKSKTDSQGNPL 76 CF CGK+GH AK+CR K C RC + H +C T+ Q N L Sbjct 393 CFNCGKEGHIAKNCRAPRKKG--------CWRCGKEGHQLKDC---TERQANFL 435 >RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol; Contains: RecName: Full=Matrix protein p17; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Spacer peptide 1; Short=SP1; AltName: Full=p2; Contains: RecName: Full=Nucleocapsid protein p7; Short=NC; Contains: RecName: Full=Transframe peptide; Short=TF; Contains: RecName: Full=p6-pol; Short=p6*; Contains: RecName: Full=Protease; AltName: Full=PR; AltName: Full=Retropepsin; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; AltName: Full=Exoribonuclease H; AltName: Full=p66 RT; Contains: RecName: Full=p51 RT; Contains: RecName: Full=p15; Contains: RecName: Full=Integrase; Short=IN [Human immunodeficiency virus type 1 (STRAIN UGANDAN / ISOLATE U455)] Sequence ID: P24740.3 Length: 1428 Range 1: 377 to 428 Score:37.7 bits(86), Expect:0.005, Method:Composition-based stats., Identities:22/63(35%), Positives:29/63(46%), Gaps:11/63(17%) Query 14 NNKNKDRGGCFKCGKKGHFAKDCRDHSNKNPESKVPGLCPRCKRGKHWANECKSKTDSQG 73 N + R CF CGK+GH AK+CR K C +C + H +C T+ Q Sbjct 377 NFRGPRRIKCFNCGKEGHLAKNCRAPRKKG--------CWKCGKEGHQMKDC---TERQA 425 Query 74 NPL 76 N L Sbjct 426 NFL 428 >RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol; Contains: RecName: Full=Matrix protein p17; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Spacer peptide 1; Short=SP1; AltName: Full=p2; Contains: RecName: Full=Nucleocapsid protein p7; Short=NC; Contains: RecName: Full=Transframe peptide; Short=TF; Contains: RecName: Full=p6-pol; Short=p6*; Contains: RecName: Full=Protease; AltName: Full=PR; AltName: Full=Retropepsin; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; AltName: Full=Exoribonuclease H; AltName: Full=p66 RT; Contains: RecName: Full=p51 RT; Contains: RecName: Full=p15; Contains: RecName: Full=Integrase; Short=IN [Human immunodeficiency virus type 1 (NDK ISOLATE)] Sequence ID: P18802.3 Length: 1432 Range 1: 390 to 432 Score:37.4 bits(85), Expect:0.006, Method:Composition-based stats., Identities:21/54(39%), Positives:26/54(48%), Gaps:11/54(20%) Query 23 CFKCGKKGHFAKDCRDHSNKNPESKVPGLCPRCKRGKHWANECKSKTDSQGNPL 76 CF CGK+GH AK+CR K C +C R H +C T+ Q N L Sbjct 390 CFNCGKEGHTAKNCRAPRKKG--------CWKCGREGHQMKDC---TERQANFL 432 >RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol; Contains: RecName: Full=Matrix protein p17; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Spacer peptide 1; Short=SP1; AltName: Full=p2; Contains: RecName: Full=Nucleocapsid protein p7; Short=NC; Contains: RecName: Full=Transframe peptide; Short=TF; Contains: RecName: Full=p6-pol; Short=p6*; Contains: RecName: Full=Protease; AltName: Full=PR; AltName: Full=Retropepsin; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; AltName: Full=Exoribonuclease H; AltName: Full=p66 RT; Contains: RecName: Full=p51 RT; Contains: RecName: Full=p15; Contains: RecName: Full=Integrase; Short=IN [Human immunodeficiency virus type 1 (JRCSF ISOLATE)] Sequence ID: P20875.3 Length: 1439 Range 1: 392 to 434 Score:37.4 bits(85), Expect:0.006, Method:Composition-based stats., Identities:20/54(37%), Positives:26/54(48%), Gaps:11/54(20%) Query 23 CFKCGKKGHFAKDCRDHSNKNPESKVPGLCPRCKRGKHWANECKSKTDSQGNPL 76 CF CGK+GH A++CR K C +C + H EC T+ Q N L Sbjct 392 CFNCGKEGHIARNCRAPRKKG--------CWKCGKEGHQMKEC---TERQANFL 434 >RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol; Contains: RecName: Full=Matrix protein p17; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Spacer peptide 1; Short=SP1; AltName: Full=p2; Contains: RecName: Full=Nucleocapsid protein p7; Short=NC; Contains: RecName: Full=Transframe peptide; Short=TF; Contains: RecName: Full=p6-pol; Short=p6*; Contains: RecName: Full=Protease; AltName: Full=PR; AltName: Full=Retropepsin; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; AltName: Full=Exoribonuclease H; AltName: Full=p66 RT; Contains: RecName: Full=p51 RT; Contains: RecName: Full=p15; Contains: RecName: Full=Integrase; Short=IN [HIV-1 M:G_92NG083] Sequence ID: O41798.3 Length: 1435 Range 1: 393 to 435 Score:37.0 bits(84), Expect:0.008, Method:Composition-based stats., Identities:20/54(37%), Positives:26/54(48%), Gaps:11/54(20%) Query 23 CFKCGKKGHFAKDCRDHSNKNPESKVPGLCPRCKRGKHWANECKSKTDSQGNPL 76 CF CGK+GH A++CR K C +C + H EC T+ Q N L Sbjct 393 CFNCGKEGHLARNCRAPRKKG--------CWKCGKEGHQMKEC---TERQANFL 435 >RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol; Contains: RecName: Full=Matrix protein p17; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Spacer peptide 1; Short=SP1; AltName: Full=p2; Contains: RecName: Full=Nucleocapsid protein p7; Short=NC; Contains: RecName: Full=Transframe peptide; Short=TF; Contains: RecName: Full=p6-pol; Short=p6*; Contains: RecName: Full=Protease; AltName: Full=PR; AltName: Full=Retropepsin; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; AltName: Full=Exoribonuclease H; AltName: Full=p66 RT; Contains: RecName: Full=p51 RT; Contains: RecName: Full=p15; Contains: RecName: Full=Integrase; Short=IN [HIV-1 N_YBF30] Sequence ID: O91080.3 Length: 1449 Range 1: 407 to 435 Score:37.0 bits(84), Expect:0.009, Method:Composition-based stats., Identities:14/29(48%), Positives:20/29(68%), Gaps:0/29(0%) Query 14 NNKNKDRGGCFKCGKKGHFAKDCRDHSNK 42 N K RGGC+KCG++GH KDC++ + Sbjct 407 NCKAPRRGGCWKCGQEGHQMKDCKNEGRQ 435 Range 2: 395 to 432 Score:35.0 bits(79), Expect:0.039, Method:Composition-based stats., Identities:17/46(37%), Positives:25/46(54%), Gaps:8/46(17%) Query 23 CFKCGKKGHFAKDCRDHSNKNPESKVPGLCPRCKRGKHWANECKSK 68 CF CGK+GH A++C K P G C +C + H +CK++ Sbjct 395 CFNCGKEGHLARNC-----KAPRR---GGCWKCGQEGHQMKDCKNE 432 >RecName: Full=Gag polyprotein; Contains: RecName: Full=Matrix protein p16; Contains: RecName: Full=Capsid protein p25; Contains: RecName: Full=Nucleocapsid protein p14 [Caprine arthritis encephalitis virus strain Cork] Sequence ID: P33458.1 Length: 441 Range 1: 381 to 435 Score:37.0 bits(84), Expect:0.009, Method:Compositional matrix adjust., Identities:24/69(35%), Positives:30/69(43%), Gaps:14/69(20%) Query 23 CFKCGKKGHFAKDCRDHSNKNPESKVPGLCPRCKRGKHWANECKSKTDSQGNPLPPHQGN 82 C+ CGK GH A+ CR +C C + H EC+ K D +G QGN Sbjct 381 CYNCGKPGHQARQCRQGI----------ICHNCGKRGHMQKECRGKRDIRGK----QQGN 426 Query 83 GMRGQPQAP 91 G RG P Sbjct 427 GRRGIRVVP 435 >RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol; Contains: RecName: Full=Matrix protein p17; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Spacer peptide 1; Short=SP1; AltName: Full=p2; Contains: RecName: Full=Nucleocapsid protein p7; Short=NC; Contains: RecName: Full=Transframe peptide; Short=TF; Contains: RecName: Full=p6-pol; Short=p6*; Contains: RecName: Full=Protease; AltName: Full=PR; AltName: Full=Retropepsin; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; AltName: Full=Exoribonuclease H; AltName: Full=p66 RT; Contains: RecName: Full=p51 RT; Contains: RecName: Full=p15; Contains: RecName: Full=Integrase; Short=IN [HIV-1 M:F1_VI850] Sequence ID: Q9QSR3.3 Length: 1430 Range 1: 386 to 426 Score:37.0 bits(84), Expect:0.009, Method:Composition-based stats., Identities:19/52(37%), Positives:25/52(48%), Gaps:11/52(21%) Query 23 CFKCGKKGHFAKDCRDHSNKNPESKVPGLCPRCKRGKHWANECKSKTDSQGN 74 CF CGK+GH A++CR K C +C R H +C T+ Q N Sbjct 386 CFNCGKEGHIARNCRAPRKKG--------CWKCGREGHQMKDC---TERQAN 426 >RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol; Contains: RecName: Full=Matrix protein p17; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Spacer peptide 1; Short=SP1; AltName: Full=p2; Contains: RecName: Full=Nucleocapsid protein p7; Short=NC; Contains: RecName: Full=Transframe peptide; Short=TF; Contains: RecName: Full=p6-pol; Short=p6*; Contains: RecName: Full=Protease; AltName: Full=PR; AltName: Full=Retropepsin; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; AltName: Full=Exoribonuclease H; AltName: Full=p66 RT; Contains: RecName: Full=p51 RT; Contains: RecName: Full=p15; Contains: RecName: Full=Integrase; Short=IN [HIV-1 M:J_SE9173] Sequence ID: Q9WC63.3 Length: 1432 Range 1: 391 to 431 Score:37.0 bits(84), Expect:0.010, Method:Composition-based stats., Identities:19/52(37%), Positives:25/52(48%), Gaps:11/52(21%) Query 23 CFKCGKKGHFAKDCRDHSNKNPESKVPGLCPRCKRGKHWANECKSKTDSQGN 74 CF CGK+GH AK+CR K C +C + H +C T+ Q N Sbjct 391 CFNCGKQGHIAKNCRAPRKKG--------CWKCGKEGHQMKDC---TERQAN 431 >RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol; Contains: RecName: Full=Matrix protein p17; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Spacer peptide 1; Short=SP1; AltName: Full=p2; Contains: RecName: Full=Nucleocapsid protein p7; Short=NC; Contains: RecName: Full=Transframe peptide; Short=TF; Contains: RecName: Full=p6-pol; Short=p6*; Contains: RecName: Full=Protease; AltName: Full=PR; AltName: Full=Retropepsin; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; AltName: Full=Exoribonuclease H; AltName: Full=p66 RT; Contains: RecName: Full=p51 RT; Contains: RecName: Full=p15; Contains: RecName: Full=Integrase; Short=IN [HIV-1 M:J_SE9280] Sequence ID: Q9WC54.3 Length: 1432 Range 1: 391 to 431 Score:37.0 bits(84), Expect:0.010, Method:Composition-based stats., Identities:19/52(37%), Positives:25/52(48%), Gaps:11/52(21%) Query 23 CFKCGKKGHFAKDCRDHSNKNPESKVPGLCPRCKRGKHWANECKSKTDSQGN 74 CF CGK+GH AK+CR K C +C + H +C T+ Q N Sbjct 391 CFNCGKQGHIAKNCRAPRKKG--------CWKCGKEGHQMKDC---TERQAN 431 >RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol; Contains: RecName: Full=Matrix protein p17; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Spacer peptide 1; Short=SP1; AltName: Full=p2; Contains: RecName: Full=Nucleocapsid protein p7; Short=NC; Contains: RecName: Full=Transframe peptide; Short=TF; Contains: RecName: Full=p6-pol; Short=p6*; Contains: RecName: Full=Protease; AltName: Full=PR; AltName: Full=Retropepsin; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; AltName: Full=Exoribonuclease H; AltName: Full=p66 RT; Contains: RecName: Full=p51 RT; Contains: RecName: Full=p15; Contains: RecName: Full=Integrase; Short=IN [Human immunodeficiency virus type 1 (isolate YU2)] Sequence ID: P35963.3 Length: 1435 Range 1: 392 to 434 Score:37.0 bits(84), Expect:0.010, Method:Composition-based stats., Identities:20/54(37%), Positives:26/54(48%), Gaps:11/54(20%) Query 23 CFKCGKKGHFAKDCRDHSNKNPESKVPGLCPRCKRGKHWANECKSKTDSQGNPL 76 CF CGK+GH AK+CR K C +C + H +C T+ Q N L Sbjct 392 CFNCGKEGHIAKNCRAPRKKG--------CWKCGKEGHQMKDC---TERQANFL 434 >RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol; Contains: RecName: Full=Matrix protein p17; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Spacer peptide 1; Short=SP1; AltName: Full=p2; Contains: RecName: Full=Nucleocapsid protein p7; Short=NC; Contains: RecName: Full=Transframe peptide; Short=TF; Contains: RecName: Full=p6-pol; Short=p6*; Contains: RecName: Full=Protease; AltName: Full=PR; AltName: Full=Retropepsin; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; AltName: Full=Exoribonuclease H; AltName: Full=p66 RT; Contains: RecName: Full=p51 RT; Contains: RecName: Full=p15; Contains: RecName: Full=Integrase; Short=IN [Human immunodeficiency virus type 1 (NEW YORK-5 ISOLATE)] Sequence ID: P12497.4 Length: 1435 Range 1: 392 to 434 Score:36.6 bits(83), Expect:0.011, Method:Composition-based stats., Identities:20/54(37%), Positives:26/54(48%), Gaps:11/54(20%) Query 23 CFKCGKKGHFAKDCRDHSNKNPESKVPGLCPRCKRGKHWANECKSKTDSQGNPL 76 CF CGK+GH AK+CR K C +C + H +C T+ Q N L Sbjct 392 CFNCGKEGHIAKNCRAPRKKG--------CWKCGKEGHQMKDC---TERQANFL 434 >RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol; Contains: RecName: Full=Matrix protein p17; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Spacer peptide 1; Short=SP1; AltName: Full=p2; Contains: RecName: Full=Nucleocapsid protein p7; Short=NC; Contains: RecName: Full=Transframe peptide; Short=TF; Contains: RecName: Full=p6-pol; Short=p6*; Contains: RecName: Full=Protease; AltName: Full=PR; AltName: Full=Retropepsin; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; AltName: Full=Exoribonuclease H; AltName: Full=p66 RT; Contains: RecName: Full=p51 RT; Contains: RecName: Full=p15; Contains: RecName: Full=Integrase; Short=IN [HIV-1 M:H_90CF056] Sequence ID: O93215.4 Length: 1435 Range 1: 393 to 430 Score:36.6 bits(83), Expect:0.011, Method:Composition-based stats., Identities:16/46(35%), Positives:22/46(47%), Gaps:8/46(17%) Query 23 CFKCGKKGHFAKDCRDHSNKNPESKVPGLCPRCKRGKHWANECKSK 68 CF CGK+GH A++CR K C +C R H +C + Sbjct 393 CFNCGKEGHIARNCRAPRKKG--------CWKCGREGHQMKDCTER 430 >RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol; Contains: RecName: Full=Matrix protein p17; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Spacer peptide 1; Short=SP1; AltName: Full=p2; Contains: RecName: Full=Nucleocapsid protein p7; Short=NC; Contains: RecName: Full=Transframe peptide; Short=TF; Contains: RecName: Full=p6-pol; Short=p6*; Contains: RecName: Full=Protease; AltName: Full=PR; AltName: Full=Retropepsin; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; AltName: Full=Exoribonuclease H; AltName: Full=p66 RT; Contains: RecName: Full=p51 RT; Contains: RecName: Full=p15; Contains: RecName: Full=Integrase; Short=IN [HIV-1 M:F2_MP255C] Sequence ID: Q9QBZ5.3 Length: 1430 Range 1: 360 to 427 Score:36.6 bits(83), Expect:0.011, Method:Composition-based stats., Identities:24/79(30%), Positives:35/79(44%), Gaps:16/79(20%) Query 1 AAAFSGQTVKDLLNNKNKDRG-----GCFKCGKKGHFAKDCRDHSNKNPESKVPGLCPRC 55 A A S T ++ K+ +G CF CGK+GH A++CR K C +C Sbjct 360 AEAMSKATSTAIMMQKSNFKGQKRIVKCFNCGKEGHIARNCRAPRKKG--------CWKC 411 Query 56 KRGKHWANECKSKTDSQGN 74 + H +C T+ Q N Sbjct 412 GKEGHQMKDC---TERQAN 427 >RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol; Contains: RecName: Full=Matrix protein p17; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Spacer peptide 1; Short=SP1; AltName: Full=p2; Contains: RecName: Full=Nucleocapsid protein p7; Short=NC; Contains: RecName: Full=Transframe peptide; Short=TF; Contains: RecName: Full=p6-pol; Short=p6*; Contains: RecName: Full=Protease; AltName: Full=PR; AltName: Full=Retropepsin; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; AltName: Full=Exoribonuclease H; AltName: Full=p66 RT; Contains: RecName: Full=p51 RT; Contains: RecName: Full=p15; Contains: RecName: Full=Integrase; Short=IN [Human immunodeficiency virus type 1 (Z2/CDC-Z34 ISOLATE)] Sequence ID: P12499.3 Length: 1436 Range 1: 394 to 436 Score:36.6 bits(83), Expect:0.013, Method:Composition-based stats., Identities:20/54(37%), Positives:26/54(48%), Gaps:11/54(20%) Query 23 CFKCGKKGHFAKDCRDHSNKNPESKVPGLCPRCKRGKHWANECKSKTDSQGNPL 76 CF CGK+GH AK+CR K C +C + H +C T+ Q N L Sbjct 394 CFNCGKEGHIAKNCRAPRRKG--------CWKCGKEGHQLKDC---TERQANFL 436 >RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol; Contains: RecName: Full=Matrix protein p17; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Spacer peptide 1; Short=SP1; AltName: Full=p2; Contains: RecName: Full=Nucleocapsid protein p7; Short=NC; Contains: RecName: Full=Transframe peptide; Short=TF; Contains: RecName: Full=p6-pol; Short=p6*; Contains: RecName: Full=Protease; AltName: Full=PR; AltName: Full=Retropepsin; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; AltName: Full=Exoribonuclease H; AltName: Full=p66 RT; Contains: RecName: Full=p51 RT; Contains: RecName: Full=p15; Contains: RecName: Full=Integrase; Short=IN [HIV-1 M:B_89.6] Sequence ID: Q73368.3 Length: 1435 Range 1: 392 to 432 Score:36.6 bits(83), Expect:0.013, Method:Composition-based stats., Identities:19/52(37%), Positives:25/52(48%), Gaps:11/52(21%) Query 23 CFKCGKKGHFAKDCRDHSNKNPESKVPGLCPRCKRGKHWANECKSKTDSQGN 74 CF CGK+GH AK+CR K C +C + H +C T+ Q N Sbjct 392 CFNCGKEGHIAKNCRAPRKKG--------CWKCGKEGHQMKDC---TERQAN 432 >RecName: Full=Gag polyprotein; AltName: Full=Pr55Gag; Contains: RecName: Full=Matrix protein p17; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Spacer peptide 1; Short=SP1; AltName: Full=p2; Contains: RecName: Full=Nucleocapsid protein p7; Short=NC; Contains: RecName: Full=Spacer peptide 2; Short=SP2; AltName: Full=p1; Contains: RecName: Full=p6-gag [Human immunodeficiency virus type 1 (MAL ISOLATE)] Sequence ID: P04594.3 Length: 505 Range 1: 389 to 460 Score:36.2 bits(82), Expect:0.015, Method:Compositional matrix adjust., Identities:27/83(33%), Positives:40/83(48%), Gaps:18/83(21%) Query 14 NNKNKDRGGCFKCGKKGHFAKDCRDHSNKNPESKVPGLCPRCKRGKHWANECKSKTDSQG 73 N K + R CF CGK+GH A++CR K C +C + H +C T+ Q Sbjct 389 NFKGQKRIKCFNCGKEGHLARNCRAPRKKG--------CWKCGKEGHQMKDC---TERQA 437 Query 74 NPL----PPHQ---GNGMRGQPQ 89 N L P H+ GN ++ +P+ Sbjct 438 NFLGKIWPSHKGRPGNFLQSRPE 460 >RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol; Contains: RecName: Full=Matrix protein p17; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Nucleocapsid protein p7; Short=NC; Contains: RecName: Full=p6-pol; Short=p6*; Contains: RecName: Full=Protease; AltName: Full=PR; AltName: Full=Retropepsin; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; AltName: Full=Exoribonuclease H; AltName: Full=p66 RT; Contains: RecName: Full=p51 RT; Contains: RecName: Full=p15; Contains: RecName: Full=Integrase; Short=IN [Simian immunodeficiency virus (isolate AGM / clone GRI-1)] Sequence ID: Q02836.2 Length: 1472 Range 1: 413 to 475 Score:36.2 bits(82), Expect:0.018, Method:Composition-based stats., Identities:23/69(33%), Positives:32/69(46%), Gaps:6/69(8%) Query 23 CFKCGKKGHFAKDCRDHSNKNPESKVPGLCPRCKRGKHWANECKSKTDSQGNPLPPHQGN 82 CFKCGK GH AKDC KN ++ + P + + + G PP+ GN Sbjct 413 CFKCGKIGHMAKDC-----KNGQANFFRVWPLGRSETKKFCAIQRRHSWSGTNSPPN-GN 466 Query 83 GMRGQPQAP 91 +R +AP Sbjct 467 SLRSSKEAP 475 >RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol; Contains: RecName: Full=Matrix protein p17; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Spacer peptide 1; Short=SP1; AltName: Full=p2; Contains: RecName: Full=Nucleocapsid protein p7; Short=NC; Contains: RecName: Full=Transframe peptide; Short=TF; Contains: RecName: Full=p6-pol; Short=p6*; Contains: RecName: Full=Protease; AltName: Full=PR; AltName: Full=Retropepsin; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; AltName: Full=Exoribonuclease H; AltName: Full=p66 RT; Contains: RecName: Full=p51 RT; Contains: RecName: Full=p15; Contains: RecName: Full=Integrase; Short=IN [HIV-1 M:C_92BR025] Sequence ID: O12158.2 Length: 1431 Range 1: 389 to 429 Score:36.2 bits(82), Expect:0.018, Method:Composition-based stats., Identities:18/52(35%), Positives:25/52(48%), Gaps:11/52(21%) Query 23 CFKCGKKGHFAKDCRDHSNKNPESKVPGLCPRCKRGKHWANECKSKTDSQGN 74 CF CGK+GH A++CR K C +C + H +C T+ Q N Sbjct 389 CFNCGKEGHLARNCRAPRKKG--------CWKCGKEGHQVKDC---TERQAN 429 >RecName: Full=Replication protein A 70 kDa DNA-binding subunit C; Short=OsRPA70c; AltName: Full=Replication factor A protein 1C; AltName: Full=Replication protein A 1C [Oryza sativa Japonica Group] Sequence ID: Q65XV7.1 Length: 951 Range 1: 884 to 920 Score:36.2 bits(82), Expect:0.019, Method:Compositional matrix adjust., Identities:17/43(40%), Positives:24/43(55%), Gaps:6/43(13%) Query 23 CFKCGKKGHFAKDCRDHSNKNPESKVPGLCPRCKRGKHWANEC 65 CFKC + GHF++DC S E C +CK+ H+A +C Sbjct 884 CFKCKQPGHFSRDCPVQSTGGSE------CFKCKQPGHFARDC 920 >RecName: Full=Gag-Pro polyprotein; AltName: Full=Pr76Gag-Pro; Contains: RecName: Full=Matrix protein p19; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Nucleocapsid protein p15-pro; Short=NC'; Short=NC-pro; Contains: RecName: Full=Protease; Short=PR; Contains: RecName: Full=p1; Contains: RecName: Full=Transframe peptide; Short=TFP; AltName: Full=p8; AltName: Full=pX [HTLV-3 strain 2026ND] Sequence ID: Q0R5R3.3 Length: 584 Range 1: 351 to 395 Score:36.2 bits(82), Expect:0.019, Method:Compositional matrix adjust., Identities:16/51(31%), Positives:27/51(52%), Gaps:7/51(13%) Query 23 CFKCGKKGHFAKDCRDHSNKNPESKVPGLCPRCKRGKHWANEC-KSKTDSQ 72 CF+CG+ GH+++DC+ V C+ HW +C + KTD++ Sbjct 351 CFRCGQVGHWSRDCKQPRPPPGPCPV------CQDPTHWKRDCPQLKTDTR 395 >RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol; Contains: RecName: Full=Matrix protein p17; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Spacer peptide 1; Short=SP1; AltName: Full=p2; Contains: RecName: Full=Nucleocapsid protein p7; Short=NC; Contains: RecName: Full=Transframe peptide; Short=TF; Contains: RecName: Full=p6-pol; Short=p6*; Contains: RecName: Full=Protease; AltName: Full=PR; AltName: Full=Retropepsin; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; AltName: Full=Exoribonuclease H; AltName: Full=p66 RT; Contains: RecName: Full=p51 RT; Contains: RecName: Full=p15; Contains: RecName: Full=Integrase; Short=IN [HIV-1 M:G_SE6165] Sequence ID: O89940.3 Length: 1433 Range 1: 393 to 433 Score:35.8 bits(81), Expect:0.020, Method:Composition-based stats., Identities:18/52(35%), Positives:25/52(48%), Gaps:11/52(21%) Query 23 CFKCGKKGHFAKDCRDHSNKNPESKVPGLCPRCKRGKHWANECKSKTDSQGN 74 CF CGK+GH A++CR K C +C + H +C T+ Q N Sbjct 393 CFNCGKEGHLARNCRAPRKKG--------CWKCGKEGHQMKDC---TERQAN 433 >RecName: Full=Gag polyprotein; AltName: Full=Pr55Gag; Contains: RecName: Full=Matrix protein p17; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Spacer peptide 1; Short=SP1; AltName: Full=p2; Contains: RecName: Full=Nucleocapsid protein p7; Short=NC; Contains: RecName: Full=Spacer peptide 2; Short=SP2; AltName: Full=p1; Contains: RecName: Full=p6-gag [Human immunodeficiency virus type 1 (ELI ISOLATE)] Sequence ID: P04592.3 Length: 500 Range 1: 393 to 455 Score:35.8 bits(81), Expect:0.021, Method:Compositional matrix adjust., Identities:26/74(35%), Positives:36/74(48%), Gaps:18/74(24%) Query 23 CFKCGKKGHFAKDCRDHSNKNPESKVPGLCPRCKRGKHWANECKSKTDSQGNPL----PP 78 CF CGK+GH AK+CR K C RC + H +C T+ Q N L P Sbjct 393 CFNCGKEGHIAKNCRAPRKKG--------CWRCGKEGHQLKDC---TERQANFLGRIWPS 441 Query 79 HQ---GNGMRGQPQ 89 H+ GN ++ +P+ Sbjct 442 HKGRPGNFLQSRPE 455 >RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol; Contains: RecName: Full=Matrix protein p17; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Spacer peptide 1; Short=SP1; AltName: Full=p2; Contains: RecName: Full=Nucleocapsid protein p7; Short=NC; Contains: RecName: Full=Transframe peptide; Short=TF; Contains: RecName: Full=p6-pol; Short=p6*; Contains: RecName: Full=Protease; AltName: Full=PR; AltName: Full=Retropepsin; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; AltName: Full=Exoribonuclease H; AltName: Full=p66 RT; Contains: RecName: Full=p51 RT; Contains: RecName: Full=p15; Contains: RecName: Full=Integrase; Short=IN [Human immunodeficiency virus type 1 (BRU ISOLATE)] Sequence ID: P03367.3 Length: 1447 Range 1: 392 to 434 Score:35.8 bits(81), Expect:0.021, Method:Composition-based stats., Identities:19/54(35%), Positives:26/54(48%), Gaps:11/54(20%) Query 23 CFKCGKKGHFAKDCRDHSNKNPESKVPGLCPRCKRGKHWANECKSKTDSQGNPL 76 CF CGK+GH A++CR K C +C + H +C T+ Q N L Sbjct 392 CFNCGKEGHIARNCRAPRKKG--------CWKCGKEGHQMKDC---TERQANFL 434 >RecName: Full=Gag polyprotein; AltName: Full=Pr55Gag; Contains: RecName: Full=Matrix protein p17; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Spacer peptide 1; Short=SP1; AltName: Full=p2; Contains: RecName: Full=Nucleocapsid protein p7; Short=NC; Contains: RecName: Full=Spacer peptide 2; Short=SP2; AltName: Full=p1; Contains: RecName: Full=p6-gag [HIV-1 M:B_ARV2/SF2] Sequence ID: P03349.3 Length: 502 Range 1: 394 to 436 Score:35.8 bits(81), Expect:0.023, Method:Compositional matrix adjust., Identities:22/54(41%), Positives:26/54(48%), Gaps:11/54(20%) Query 23 CFKCGKKGHFAKDCRDHSNKNPESKVPGLCPRCKRGKHWANECKSKTDSQGNPL 76 CF CGK+GH AK+CR K C RC R H +C T+ Q N L Sbjct 394 CFNCGKEGHIAKNCRAPRKKG--------CWRCGREGHQMKDC---TERQANFL 436 >RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol; Contains: RecName: Full=Matrix protein p17; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Spacer peptide 1; Short=SP1; AltName: Full=p2; Contains: RecName: Full=Nucleocapsid protein p7; Short=NC; Contains: RecName: Full=Transframe peptide; Short=TF; Contains: RecName: Full=p6-pol; Short=p6*; Contains: RecName: Full=Protease; AltName: Full=PR; AltName: Full=Retropepsin; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; AltName: Full=Exoribonuclease H; AltName: Full=p66 RT; Contains: RecName: Full=p51 RT; Contains: RecName: Full=p15; Contains: RecName: Full=Integrase; Short=IN [HIV-1 M:K_97ZR-EQTB11] Sequence ID: Q9QBZ9.2 Length: 1429 Range 1: 387 to 424 Score:35.8 bits(81), Expect:0.024, Method:Composition-based stats., Identities:15/46(33%), Positives:22/46(47%), Gaps:8/46(17%) Query 23 CFKCGKKGHFAKDCRDHSNKNPESKVPGLCPRCKRGKHWANECKSK 68 CF CGK+GH A++CR K C +C + H +C + Sbjct 387 CFNCGKEGHLARNCRAPRKKG--------CWKCGKEGHQMKDCSER 424 >RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol; Contains: RecName: Full=Matrix protein p17; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Spacer peptide 1; Short=SP1; AltName: Full=p2; Contains: RecName: Full=Nucleocapsid protein p7; Short=NC; Contains: RecName: Full=Transframe peptide; Short=TF; Contains: RecName: Full=p6-pol; Short=p6*; Contains: RecName: Full=Protease; AltName: Full=PR; AltName: Full=Retropepsin; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; AltName: Full=Exoribonuclease H; AltName: Full=p66 RT; Contains: RecName: Full=p51 RT; Contains: RecName: Full=p15; Contains: RecName: Full=Integrase; Short=IN [HIV-1 M:K_96CM-MP535] Sequence ID: Q9QBY3.3 Length: 1430 Range 1: 387 to 427 Score:35.8 bits(81), Expect:0.024, Method:Composition-based stats., Identities:18/52(35%), Positives:25/52(48%), Gaps:11/52(21%) Query 23 CFKCGKKGHFAKDCRDHSNKNPESKVPGLCPRCKRGKHWANECKSKTDSQGN 74 CF CGK+GH A++CR K C +C + H +C T+ Q N Sbjct 387 CFNCGKEGHIARNCRAPRKKG--------CWKCGKEGHQMKDC---TERQAN 427 >RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol; Contains: RecName: Full=Matrix protein p17; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Spacer peptide 1; Short=SP1; AltName: Full=p2; Contains: RecName: Full=Nucleocapsid protein p7; Short=NC; Contains: RecName: Full=Transframe peptide; Short=TF; Contains: RecName: Full=p6-pol; Short=p6*; Contains: RecName: Full=Protease; AltName: Full=PR; AltName: Full=Retropepsin; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; AltName: Full=Exoribonuclease H; AltName: Full=p66 RT; Contains: RecName: Full=p51 RT; Contains: RecName: Full=p15; Contains: RecName: Full=Integrase; Short=IN [HIV-1 M:C_ETH2220] Sequence ID: Q75002.3 Length: 1439 Range 1: 389 to 429 Score:35.8 bits(81), Expect:0.024, Method:Composition-based stats., Identities:18/52(35%), Positives:25/52(48%), Gaps:11/52(21%) Query 23 CFKCGKKGHFAKDCRDHSNKNPESKVPGLCPRCKRGKHWANECKSKTDSQGN 74 CF CGK+GH A++CR K C +C + H +C T+ Q N Sbjct 389 CFNCGKEGHLARNCRAPRKKG--------CWKCGKEGHQMKDC---TERQAN 429 >RecName: Full=Gag-Pro-Pol polyprotein; AltName: Full=Pr160Gag-Pro-Pol; Contains: RecName: Full=Matrix protein p19; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Nucleocapsid protein p15-pro; Short=NC'; Short=NC-pro; Contains: RecName: Full=Protease; Short=PR; Contains: RecName: Full=p1; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; Short=RT; Contains: RecName: Full=Integrase; Short=IN [Human T-cell leukemia virus 3 (strain Pyl43)] Sequence ID: Q4U0X6.4 Length: 1440 Range 1: 351 to 397 Score:35.8 bits(81), Expect:0.026, Method:Composition-based stats., Identities:15/53(28%), Positives:27/53(50%), Gaps:7/53(13%) Query 23 CFKCGKKGHFAKDCRDHSNKNPESKVPGLCPRCKRGKHWANECKS-KTDSQGN 74 CF+CG+ GH+++DC+ + C+ HW +C K D++G+ Sbjct 351 CFRCGQAGHWSRDCKQPRPPPGPCPL------CQDPAHWKQDCPQLKADTKGS 397 >RecName: Full=Gag polyprotein; Contains: RecName: Full=Matrix protein p15; Short=MA; Contains: RecName: Full=Capsid protein p26; Short=CA; Contains: RecName: Full=p1; Contains: RecName: Full=Nucleocapsid protein p11; Short=NC; Contains: RecName: Full=p9 [Equine infectious anemia virus (CLONE 1369)] Sequence ID: P69730.1 Length: 486 >RecName: Full=Gag polyprotein; Contains: RecName: Full=Matrix protein p15; Short=MA; Contains: RecName: Full=Capsid protein p26; Short=CA; Contains: RecName: Full=p1; Contains: RecName: Full=Nucleocapsid protein p11; Short=NC; Contains: RecName: Full=p9 [Equine infectious anemia virus (clone CL22)] Sequence ID: P69731.1 Length: 486 >RecName: Full=Gag polyprotein; Contains: RecName: Full=Matrix protein p15; Short=MA; Contains: RecName: Full=Capsid protein p26; Short=CA; Contains: RecName: Full=p1; Contains: RecName: Full=Nucleocapsid protein p11; Short=NC; Contains: RecName: Full=p9 [Equine infectious anemia virus (ISOLATE WYOMING)] Sequence ID: P69732.1 Length: 486 Range 1: 383 to 435 Score:35.8 bits(81), Expect:0.026, Method:Compositional matrix adjust., Identities:22/73(30%), Positives:36/73(49%), Gaps:20/73(27%) Query 23 CFKCGKKGHFAKDCRDHSNKNPESKVPGLCPRCKRGKHWANECKSKTDSQGNPLPPHQGN 82 C+ CGK GH + CR P +C +CK+ H++ +C+S +P + Sbjct 383 CYNCGKPGHLSSQCR----------APKVCFKCKQPGHFSKQCRS--------VPKNGKQ 424 Query 83 GMRGQPQAPKQAY 95 G +G+PQ KQ + Sbjct 425 GAQGRPQ--KQTF 435 >RecName: Full=Gag polyprotein; AltName: Full=Pr53Gag; Contains: RecName: Full=Matrix protein p19; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Nucleocapsid protein p15-gag; Short=NC-gag [HTLV-3 strain 2026ND] Sequence ID: Q0R5R4.3 Length: 422 Range 1: 351 to 395 Score:35.4 bits(80), Expect:0.026, Method:Compositional matrix adjust., Identities:16/51(31%), Positives:27/51(52%), Gaps:7/51(13%) Query 23 CFKCGKKGHFAKDCRDHSNKNPESKVPGLCPRCKRGKHWANEC-KSKTDSQ 72 CF+CG+ GH+++DC+ V C+ HW +C + KTD++ Sbjct 351 CFRCGQVGHWSRDCKQPRPPPGPCPV------CQDPTHWKRDCPQLKTDTR 395 >RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol; Contains: RecName: Full=Matrix protein p17; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Spacer peptide 1; Short=SP1; AltName: Full=p2; Contains: RecName: Full=Nucleocapsid protein p7; Short=NC; Contains: RecName: Full=Transframe peptide; Short=TF; Contains: RecName: Full=p6-pol; Short=p6*; Contains: RecName: Full=Protease; AltName: Full=PR; AltName: Full=Retropepsin; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; AltName: Full=Exoribonuclease H; AltName: Full=p66 RT; Contains: RecName: Full=p51 RT; Contains: RecName: Full=p15; Contains: RecName: Full=Integrase; Short=IN [HIV-1 M:B_MN] Sequence ID: P05961.3 Length: 1441 Range 1: 395 to 437 Score:35.8 bits(81), Expect:0.027, Method:Composition-based stats., Identities:19/54(35%), Positives:26/54(48%), Gaps:11/54(20%) Query 23 CFKCGKKGHFAKDCRDHSNKNPESKVPGLCPRCKRGKHWANECKSKTDSQGNPL 76 CF CGK+GH AK+CR + C +C + H +C T+ Q N L Sbjct 395 CFNCGKEGHIAKNCRAPRKRG--------CWKCGKEGHQMKDC---TERQANFL 437 >RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol; Contains: RecName: Full=Matrix protein p17; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Spacer peptide 1; Short=SP1; AltName: Full=p2; Contains: RecName: Full=Nucleocapsid protein p7; Short=NC; Contains: RecName: Full=Transframe peptide; Short=TF; Contains: RecName: Full=p6-pol; Short=p6*; Contains: RecName: Full=Protease; AltName: Full=PR; AltName: Full=Retropepsin; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; AltName: Full=Exoribonuclease H; AltName: Full=p66 RT; Contains: RecName: Full=p51 RT; Contains: RecName: Full=p15; Contains: RecName: Full=Integrase; Short=IN [Human immunodeficiency virus type 1 lw12.3 isolate] Sequence ID: P0C6F2.1 Length: 1435 Range 1: 392 to 432 Score:35.4 bits(80), Expect:0.028, Method:Composition-based stats., Identities:18/52(35%), Positives:25/52(48%), Gaps:11/52(21%) Query 23 CFKCGKKGHFAKDCRDHSNKNPESKVPGLCPRCKRGKHWANECKSKTDSQGN 74 CF CGK+GH A++CR K C +C + H +C T+ Q N Sbjct 392 CFNCGKEGHIARNCRAPRKKG--------CWKCGKEGHQMKDC---TERQAN 432 >RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol; Contains: RecName: Full=Matrix protein p17; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Spacer peptide p2; Contains: RecName: Full=Nucleocapsid protein p7; Short=NC; Contains: RecName: Full=p6-pol; Short=p6*; Contains: RecName: Full=Protease; AltName: Full=PR; AltName: Full=Retropepsin; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; AltName: Full=Exoribonuclease H; AltName: Full=p66 RT; Contains: RecName: Full=p51 RT; Contains: RecName: Full=p15; Contains: RecName: Full=Integrase; Short=IN [SIVcpz EK505] Sequence ID: Q1A249.3 Length: 1448 Range 1: 395 to 431 Score:35.4 bits(80), Expect:0.029, Method:Composition-based stats., Identities:15/45(33%), Positives:23/45(51%), Gaps:8/45(17%) Query 23 CFKCGKKGHFAKDCRDHSNKNPESKVPGLCPRCKRGKHWANECKS 67 CF CGK+GH A++C+ K C +C + H +C+S Sbjct 395 CFNCGKEGHLARNCKAPRKKG--------CWKCGQEGHQMKDCRS 431 >RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol; Contains: RecName: Full=Matrix protein p17; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Nucleocapsid protein p7; Short=NC; Contains: RecName: Full=p6-pol; Short=p6*; Contains: RecName: Full=Protease; AltName: Full=PR; AltName: Full=Retropepsin; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; AltName: Full=Exoribonuclease H; AltName: Full=p66 RT; Contains: RecName: Full=p51 RT; Contains: RecName: Full=p15; Contains: RecName: Full=Integrase; Short=IN [Simian immunodeficiency virus (TYO-1 ISOLATE)] Sequence ID: P05895.2 Length: 1467 Range 1: 425 to 483 Score:35.4 bits(80), Expect:0.029, Method:Composition-based stats., Identities:23/60(38%), Positives:29/60(48%), Gaps:3/60(5%) Query 23 CFKCGKKGHFAKDCRDHSNKNPESKVP-GLCPRCKRGKHWA-NECKSKTDSQGNPLPPHQ 80 C KCGK GH AKDCR N V G + R W+ EC S T+ +P+ P + Sbjct 425 CLKCGKPGHLAKDCRGQVNFFRVWTVDGGKTEKFSRRYSWSGTECASSTERH-HPIRPSK 483 >RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol; Contains: RecName: Full=Matrix protein p17; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Spacer peptide 1; Short=SP1; AltName: Full=p2; Contains: RecName: Full=Nucleocapsid protein p7; Short=NC; Contains: RecName: Full=Transframe peptide; Short=TF; Contains: RecName: Full=p6-pol; Short=p6*; Contains: RecName: Full=Protease; AltName: Full=PR; AltName: Full=Retropepsin; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; AltName: Full=Exoribonuclease H; AltName: Full=p66 RT; Contains: RecName: Full=p51 RT; Contains: RecName: Full=p15; Contains: RecName: Full=Integrase; Short=IN [HIV-1 O_ANT70] Sequence ID: Q77373.3 Length: 1435 Range 1: 376 to 432 Score:35.4 bits(80), Expect:0.029, Method:Composition-based stats., Identities:20/65(31%), Positives:30/65(46%), Gaps:11/65(16%) Query 6 GQTVKDLLNNKNKDRGG---CFKCGKKGHFAKDCRDHSNKNPESKVPGLCPRCKRGKHWA 62 G T + +N R G CF CGK+GH A++CR K C +C + H Sbjct 376 GYTAVFMQRGQNPIRKGTIKCFNCGKEGHIARNCRAPRKKG--------CWKCGQEGHQM 427 Query 63 NECKS 67 +C++ Sbjct 428 KDCRN 432 >RecName: Full=Gag polyprotein; AltName: Full=Pr55Gag; Contains: RecName: Full=Matrix protein p17; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Spacer peptide 1; Short=SP1; AltName: Full=p2; Contains: RecName: Full=Nucleocapsid protein p7; Short=NC; Contains: RecName: Full=Spacer peptide 2; Short=SP2; AltName: Full=p1; Contains: RecName: Full=p6-gag [Human immunodeficiency virus type 1 (OYI ISOLATE)] Sequence ID: P20889.3 Length: 499 Range 1: 391 to 453 Score:35.4 bits(80), Expect:0.029, Method:Compositional matrix adjust., Identities:26/74(35%), Positives:36/74(48%), Gaps:18/74(24%) Query 23 CFKCGKKGHFAKDCRDHSNKNPESKVPGLCPRCKRGKHWANECKSKTDSQGNPL----PP 78 CF CGK+GH AK+CR K C +C R H +C T+ Q N L P Sbjct 391 CFNCGKEGHIAKNCRAPRKKG--------CWKCGREGHQMKDC---TERQANFLGKIWPS 439 Query 79 HQ---GNGMRGQPQ 89 H+ GN ++ +P+ Sbjct 440 HKGRPGNFLQNRPE 453 >RecName: Full=Cellular nucleic acid-binding protein homolog [Schizosaccharomyces pombe 972h-] Sequence ID: P36627.1 Length: 179 Range 1: 62 to 99 Score:35.0 bits(79), Expect:0.034, Method:Compositional matrix adjust., Identities:16/38(42%), Positives:24/38(63%), Gaps:1/38(2%) Query 1 AAAFSGQTVKDLLNNKNKDRGG-CFKCGKKGHFAKDCR 37 A +G V+D ++ N +G C+KCG+ GH A+DCR Sbjct 62 ACGTAGHLVRDCPSSPNPRQGAECYKCGRVGHIARDCR 99 >RecName: Full=Gag-Pro polyprotein; AltName: Full=Pr76Gag-Pro; Contains: RecName: Full=Matrix protein p19; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Nucleocapsid protein p15-pro; Short=NC'; Short=NC-pro; Contains: RecName: Full=Protease; Short=PR; Contains: RecName: Full=p1; Contains: RecName: Full=Transframe peptide; Short=TFP; AltName: Full=p8; AltName: Full=pX [Human T-cell leukemia virus 3 (strain Pyl43)] Sequence ID: Q09SZ9.3 Length: 584 Range 1: 351 to 397 Score:35.4 bits(80), Expect:0.036, Method:Compositional matrix adjust., Identities:15/53(28%), Positives:28/53(52%), Gaps:7/53(13%) Query 23 CFKCGKKGHFAKDCRDHSNKNPESKVPGLCPRCKRGKHWANEC-KSKTDSQGN 74 CF+CG+ GH+++DC+ + C+ HW +C + K D++G+ Sbjct 351 CFRCGQAGHWSRDCKQPRPPPGPCPL------CQDPAHWKQDCPQLKADTKGS 397 >RecName: Full=Gag-Pro-Pol polyprotein; AltName: Full=Pr160Gag-Pro-Pol; Contains: RecName: Full=Matrix protein p19; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Nucleocapsid protein p15-pro; Short=NC'; Short=NC-pro; Contains: RecName: Full=Protease; Short=PR; Contains: RecName: Full=p1; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; Short=RT; Contains: RecName: Full=Integrase; Short=IN [HTLV-3 strain 2026ND] Sequence ID: Q0R5R2.3 Length: 1440 Range 1: 351 to 395 Score:35.0 bits(79), Expect:0.039, Method:Composition-based stats., Identities:16/51(31%), Positives:26/51(50%), Gaps:7/51(13%) Query 23 CFKCGKKGHFAKDCRDHSNKNPESKVPGLCPRCKRGKHWANECKS-KTDSQ 72 CF+CG+ GH+++DC+ V C+ HW +C KTD++ Sbjct 351 CFRCGQVGHWSRDCKQPRPPPGPCPV------CQDPTHWKRDCPQLKTDTR 395 >RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol; Contains: RecName: Full=Matrix protein p17; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Spacer peptide 1; Short=SP1; AltName: Full=p2; Contains: RecName: Full=Nucleocapsid protein p7; Short=NC; Contains: RecName: Full=Transframe peptide; Short=TF; Contains: RecName: Full=p6-pol; Short=p6*; Contains: RecName: Full=Protease; AltName: Full=PR; AltName: Full=Retropepsin; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; AltName: Full=Exoribonuclease H; AltName: Full=p66 RT; Contains: RecName: Full=p51 RT; Contains: RecName: Full=p15; Contains: RecName: Full=Integrase; Short=IN [HIV-1 M:B_HXB2R] Sequence ID: P04585.4 Length: 1435 Range 1: 392 to 434 Score:35.0 bits(79), Expect:0.041, Method:Composition-based stats., Identities:19/54(35%), Positives:26/54(48%), Gaps:11/54(20%) Query 23 CFKCGKKGHFAKDCRDHSNKNPESKVPGLCPRCKRGKHWANECKSKTDSQGNPL 76 CF CGK+GH A++CR K C +C + H +C T+ Q N L Sbjct 392 CFNCGKEGHTARNCRAPRKKG--------CWKCGKEGHQMKDC---TERQANFL 434 >RecName: Full=Gag polyprotein; AltName: Full=Pr55Gag; Contains: RecName: Full=Matrix protein p17; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Spacer peptide 1; Short=SP1; AltName: Full=p2; Contains: RecName: Full=Nucleocapsid protein p7; Short=NC; Contains: RecName: Full=Spacer peptide 2; Short=SP2; AltName: Full=p1; Contains: RecName: Full=p6-gag [HIV-1 M:F1_93BR020] Sequence ID: O89291.3 Length: 492 Range 1: 360 to 429 Score:35.0 bits(79), Expect:0.043, Method:Compositional matrix adjust., Identities:27/81(33%), Positives:36/81(44%), Gaps:16/81(19%) Query 1 AAAFSGQTVKDLLNNKNKDRGG-----CFKCGKKGHFAKDCRDHSNKNPESKVPGLCPRC 55 A A S T ++ K+ +G CF CGK+GH AK+CR K C +C Sbjct 360 AEAMSQATNTAIMMQKSNFKGQRRIVKCFNCGKEGHIAKNCRAPRKKG--------CWKC 411 Query 56 KRGKHWANECKSKTDSQGNPL 76 R H +C T+ Q N L Sbjct 412 GREGHQMKDC---TERQANFL 429 >RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol; Contains: RecName: Full=Matrix protein p17; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Spacer peptide 1; Short=SP1; AltName: Full=p2; Contains: RecName: Full=Nucleocapsid protein p7; Short=NC; Contains: RecName: Full=Transframe peptide; Short=TF; Contains: RecName: Full=p6-pol; Short=p6*; Contains: RecName: Full=Protease; AltName: Full=PR; AltName: Full=Retropepsin; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; AltName: Full=Exoribonuclease H; AltName: Full=p66 RT; Contains: RecName: Full=p51 RT; Contains: RecName: Full=p15; Contains: RecName: Full=Integrase; Short=IN [Human immunodeficiency virus type 1 BH10] Sequence ID: P03366.3 Length: 1447 Range 1: 392 to 434 Score:35.0 bits(79), Expect:0.043, Method:Composition-based stats., Identities:19/54(35%), Positives:26/54(48%), Gaps:11/54(20%) Query 23 CFKCGKKGHFAKDCRDHSNKNPESKVPGLCPRCKRGKHWANECKSKTDSQGNPL 76 CF CGK+GH A++CR K C +C + H +C T+ Q N L Sbjct 392 CFNCGKEGHTARNCRAPRKKG--------CWKCGKEGHQMKDC---TERQANFL 434 >RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr170Gag-Pol; Contains: RecName: Full=Matrix protein p16; Short=MA; Contains: RecName: Full=Capsid protein p26; Short=CA; Contains: RecName: Full=Transframe peptide; AltName: Full=p11; Contains: RecName: Full=Protease; AltName: Full=P119; AltName: Full=Retropepsin; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; Short=RT; AltName: Full=Exoribonuclease H; AltName: Full=P72; Contains: RecName: Full=Integrase; Short=IN [Jembrana disease virus] Sequence ID: Q82851.1 Length: 1432 Range 1: 370 to 404 Score:35.0 bits(79), Expect:0.045, Method:Composition-based stats., Identities:15/46(33%), Positives:21/46(45%), Gaps:11/46(23%) Query 23 CFKCGKKGHFAKDCRDHSNKNPESKVPGLCPRCKRGKHWANECKSK 68 C+ CGK GH +DC++ C +C + H CKSK Sbjct 370 CYGCGKPGHIRRDCKNQK-----------CFKCGKPGHLQRNCKSK 404 >RecName: Full=Glycine-rich protein 2 [Nicotiana sylvestris] Sequence ID: P27484.1 Length: 214 Range 1: 159 to 211 Score:34.7 bits(78), Expect:0.045, Method:Compositional matrix adjust., Identities:19/53(36%), Positives:23/53(43%), Gaps:8/53(15%) Query 23 CFKCGKKGHFAKDCRDH--------SNKNPESKVPGLCPRCKRGKHWANECKS 67 CFKCG+ GHFA+DC G C +C H+A EC S Sbjct 159 CFKCGESGHFARDCSQSGGGGGGGRFGGGGGGGGGGGCYKCGEDGHFARECTS 211 >RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol; Contains: RecName: Full=Matrix protein p17; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Spacer peptide 1; Short=SP1; AltName: Full=p2; Contains: RecName: Full=Nucleocapsid protein p7; Short=NC; Contains: RecName: Full=Transframe peptide; Short=TF; Contains: RecName: Full=p6-pol; Short=p6*; Contains: RecName: Full=Protease; AltName: Full=PR; AltName: Full=Retropepsin; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; AltName: Full=Exoribonuclease H; AltName: Full=p66 RT; Contains: RecName: Full=p51 RT; Contains: RecName: Full=p15; Contains: RecName: Full=Integrase; Short=IN [HIV-1 M:F2_MP257C] Sequence ID: Q9QBZ1.3 Length: 1434 Range 1: 364 to 431 Score:35.0 bits(79), Expect:0.049, Method:Composition-based stats., Identities:23/79(29%), Positives:35/79(44%), Gaps:16/79(20%) Query 1 AAAFSGQTVKDLLNNKNKDRG-----GCFKCGKKGHFAKDCRDHSNKNPESKVPGLCPRC 55 A A S T ++ K+ +G CF CGK+GH A++CR + C +C Sbjct 364 AEAMSKATGAAIMMQKSNFKGQRRIVKCFNCGKEGHIARNCRAPRKRG--------CWKC 415 Query 56 KRGKHWANECKSKTDSQGN 74 + H +C T+ Q N Sbjct 416 GQEGHQMKDC---TERQAN 431