RID: 3CH3PX8T013 Job Title:Spike glycoprotein from SPIKE_BCHK4 A3EX94... Program: BLASTP Query: Spike glycoprotein from SPIKE_BCHK4 A3EX94 {ECO:0000255|HAMAP-Rule:MF_04099} (S glycoprotein {ECO:0000255|HAMAP-Rule:MF_04099}) IFVRGCDSQFVDMSPASNTSECLESQVDAAAFSKLMWPYPIDPSKVDGIIYPLGRTYSNI ID: lcl|Query_4853594(amino acid) Length: 674 Database: swissprot Non-redundant UniProtKB/SwissProt sequences Sequences producing significant alignments: Scientific Common Max Total Query E Per. Acc. Description Name Name Taxid Score Score cover Value Ident Len Accession RecName: Full=Spike glycoprotein; Short=S glycoprotein; AltNam... Tylonycteris... NA 694007 1394 1394 100% 0.0 100.00 1352 A3EX94.1 RecName: Full=Spike glycoprotein; Short=S glycoprotein; AltNam... Bat coronavi... NA 389230 1345 1345 100% 0.0 96.14 1350 Q0Q4F2.1 RecName: Full=Spike glycoprotein; Short=S glycoprotein; AltNam... Betacoronavi... NA 1263720 874 874 100% 0.0 62.96 1353 K9N5Q8.1 RecName: Full=Spike glycoprotein; Short=S glycoprotein; AltNam... Pipistrellus... NA 694008 833 833 100% 0.0 60.77 1352 A3EXD0.1 RecName: Full=Spike glycoprotein; Short=S glycoprotein; AltNam... Murine hepat... NA 11144 128 128 63% 2e-29 26.51 1235 P11225.1 RecName: Full=Spike glycoprotein; Short=S glycoprotein; AltNam... Human corona... NA 443240 125 183 57% 2e-28 32.21 1351 Q14EB0.1 RecName: Full=Spike glycoprotein; Short=S glycoprotein; AltNam... Human corona... NA 443241 124 182 57% 5e-28 32.21 1351 Q0ZME7.1 RecName: Full=Spike glycoprotein; Short=S glycoprotein; AltNam... Murine hepat... NA 11142 120 120 79% 1e-26 25.35 1324 P11224.2 RecName: Full=Spike glycoprotein; Short=S glycoprotein; AltNam... Human corona... NA 31631 112 164 77% 4e-24 26.88 1353 P36334.1 RecName: Full=Spike glycoprotein; Short=S glycoprotein; AltNam... Bat SARS cor... NA 442736 110 110 67% 1e-23 26.41 1242 Q3LZX1.1 RecName: Full=Spike glycoprotein; Short=S glycoprotein; AltNam... Porcine hema... NA 230236 110 165 55% 2e-23 30.65 1349 Q8JSP8.1 RecName: Full=Spike glycoprotein; Short=S glycoprotein; AltNam... Porcine hema... NA 230237 109 165 74% 2e-23 27.70 1349 Q8BB25.1 RecName: Full=Spike glycoprotein; Short=S glycoprotein; AltNam... Bovine coron... NA 11131 109 164 77% 2e-23 27.02 1363 P25192.1 RecName: Full=Spike glycoprotein; Short=S glycoprotein; AltNam... Bovine coron... NA 11133 109 165 77% 3e-23 26.77 1363 P25193.2 RecName: Full=Spike glycoprotein; Short=S glycoprotein; AltNam... Human corona... NA 443239 109 165 55% 3e-23 30.77 1356 Q5MQD0.1 RecName: Full=Spike glycoprotein; Short=S glycoprotein; AltNam... Bovine coron... NA 11132 108 165 77% 3e-23 26.77 1363 P15777.1 RecName: Full=Spike glycoprotein; Short=S glycoprotein; AltNam... Bovine coron... NA 11134 108 165 77% 4e-23 26.77 1363 P25194.1 RecName: Full=Spike glycoprotein; Short=S glycoprotein; AltNam... Bovine respi... NA 233264 108 165 77% 4e-23 27.23 1363 Q8V436.1 RecName: Full=Spike glycoprotein; Short=S glycoprotein; AltNam... Bovine coron... NA 11130 108 164 77% 5e-23 26.77 1363 P25191.1 RecName: Full=Spike glycoprotein; Short=S glycoprotein; AltNam... Bat SARS CoV... NA 349344 107 107 67% 9e-23 25.65 1241 Q3I5J5.1 RecName: Full=Spike glycoprotein; Short=S glycoprotein; AltNam... Bovine coron... NA 231432 106 163 51% 2e-22 32.08 1363 Q9QAQ8.1 RecName: Full=Spike glycoprotein; Short=S glycoprotein; AltNam... Bovine coron... NA 11129 106 161 77% 2e-22 26.77 1363 P25190.1 RecName: Full=Spike glycoprotein; Short=S glycoprotein; AltNam... Bovine coron... NA 233261 106 161 51% 3e-22 32.08 1363 Q9QAR5.1 RecName: Full=Spike glycoprotein; Short=S glycoprotein; AltNam... Severe acute... NA 694009 105 105 67% 4e-22 25.91 1255 P59594.1 RecName: Full=Spike glycoprotein; Short=S glycoprotein; AltNam... Bovine enter... NA 233262 103 160 77% 2e-21 26.72 1363 Q91A26.1 RecName: Full=Spike glycoprotein; Short=S glycoprotein; AltNam... Murine hepat... NA 12760 100 157 46% 2e-20 32.60 1376 P22432.1 RecName: Full=Spike glycoprotein; Short=S glycoprotein; AltNam... Murine hepat... NA 33735 100 157 46% 2e-20 32.60 1376 Q02385.1 RecName: Full=Spike glycoprotein; Short=S glycoprotein; AltNam... Bat CoV 279/... NA 389167 100 100 67% 2e-20 24.41 1241 Q0Q475.1 RecName: Full=Spike glycoprotein; Short=S glycoprotein; AltNam... Severe acute... NA 2697049 95.1 95.1 29% 8e-19 30.69 1273 P0DTC2.1 RecName: Full=Spike glycoprotein; Short=S glycoprotein; AltNam... Rat coronavi... NA 33740 94.0 147 71% 2e-18 24.14 1360 Q9IKD1.1 RecName: Full=Spike glycoprotein; Short=S glycoprotein; AltNam... Rousettus ba... NA 694006 75.5 135 44% 1e-12 31.36 1274 A3EXG6.1 Alignments: >RecName: Full=Spike glycoprotein; Short=S glycoprotein; AltName: Full=E2; AltName: Full=Peplomer protein; Contains: RecName: Full=Spike protein S1; Contains: RecName: Full=Spike protein S2; Contains: RecName: Full=Spike protein S2'; Flags: Precursor [Tylonycteris bat coronavirus HKU4] Sequence ID: A3EX94.1 Length: 1352 Range 1: 73 to 746 Score:1394 bits(3609), Expect:0.0, Method:Compositional matrix adjust., Identities:674/674(100%), Positives:674/674(100%), Gaps:0/674(0%) Query 1 TLAYTGLFPLQGDLGSQYLYSVSHAVGHDGDPTKAYISNYSLLVNDFDNGFVVRIGAAAN 60 TLAYTGLFPLQGDLGSQYLYSVSHAVGHDGDPTKAYISNYSLLVNDFDNGFVVRIGAAAN Sbjct 73 TLAYTGLFPLQGDLGSQYLYSVSHAVGHDGDPTKAYISNYSLLVNDFDNGFVVRIGAAAN 132 Query 61 STGTIVISPSVNTKIKKAYPAFILGSSLTNTSAGQPLYANYSLTIIPDGCGTVLHAFYCI 120 STGTIVISPSVNTKIKKAYPAFILGSSLTNTSAGQPLYANYSLTIIPDGCGTVLHAFYCI Sbjct 133 STGTIVISPSVNTKIKKAYPAFILGSSLTNTSAGQPLYANYSLTIIPDGCGTVLHAFYCI 192 Query 121 LKPRTVNRCPSGTGYVSYFIYETVHNDCQSTINRNASLNSFKSFFDLVNCTFFNSWDITA 180 LKPRTVNRCPSGTGYVSYFIYETVHNDCQSTINRNASLNSFKSFFDLVNCTFFNSWDITA Sbjct 193 LKPRTVNRCPSGTGYVSYFIYETVHNDCQSTINRNASLNSFKSFFDLVNCTFFNSWDITA 252 Query 181 DETKEWFGITQDTQGVHLYSSRKGDLYGGNMFRFATLPVYEGIKYYTVIPRSFRSKANKR 240 DETKEWFGITQDTQGVHLYSSRKGDLYGGNMFRFATLPVYEGIKYYTVIPRSFRSKANKR Sbjct 253 DETKEWFGITQDTQGVHLYSSRKGDLYGGNMFRFATLPVYEGIKYYTVIPRSFRSKANKR 312 Query 241 EAWAAFYVYKLHQLTYLLDFSVDGYIRRAIDCGHDDLSQLHCSYTSFEVDTGVYSVSSYE 300 EAWAAFYVYKLHQLTYLLDFSVDGYIRRAIDCGHDDLSQLHCSYTSFEVDTGVYSVSSYE Sbjct 313 EAWAAFYVYKLHQLTYLLDFSVDGYIRRAIDCGHDDLSQLHCSYTSFEVDTGVYSVSSYE 372 Query 301 ASATGTFIEQPNATECDFSPMLTGVAPQVYNFKRLVFSNCNYNLTKLLSLFAVDEFSCNG 360 ASATGTFIEQPNATECDFSPMLTGVAPQVYNFKRLVFSNCNYNLTKLLSLFAVDEFSCNG Sbjct 373 ASATGTFIEQPNATECDFSPMLTGVAPQVYNFKRLVFSNCNYNLTKLLSLFAVDEFSCNG 432 Query 361 ISPDSIARGCYSTLTVDYFAYPLSMKSYIRPGSAGNIPLYNYKQSFANPTCRVMASVLAN 420 ISPDSIARGCYSTLTVDYFAYPLSMKSYIRPGSAGNIPLYNYKQSFANPTCRVMASVLAN Sbjct 433 ISPDSIARGCYSTLTVDYFAYPLSMKSYIRPGSAGNIPLYNYKQSFANPTCRVMASVLAN 492 Query 421 VTITKPHAYGYISKCSRLTGANQDVETPLYINPGEYSICRDFSPGGFSEDGQVFKRTLTQ 480 VTITKPHAYGYISKCSRLTGANQDVETPLYINPGEYSICRDFSPGGFSEDGQVFKRTLTQ Sbjct 493 VTITKPHAYGYISKCSRLTGANQDVETPLYINPGEYSICRDFSPGGFSEDGQVFKRTLTQ 552 Query 481 FEGGGLLIGVGTRVPMTDNLQMSFIISVQYGTGTDSVCPMLDLGDSLTITNRLGKCVDYS 540 FEGGGLLIGVGTRVPMTDNLQMSFIISVQYGTGTDSVCPMLDLGDSLTITNRLGKCVDYS Sbjct 553 FEGGGLLIGVGTRVPMTDNLQMSFIISVQYGTGTDSVCPMLDLGDSLTITNRLGKCVDYS 612 Query 541 LYGVTGRGVFQNCTAVGVKQQRFVYDSFDNLVGYYSDDGNYYCVRPCVSVPVSVIYDKST 600 LYGVTGRGVFQNCTAVGVKQQRFVYDSFDNLVGYYSDDGNYYCVRPCVSVPVSVIYDKST Sbjct 613 LYGVTGRGVFQNCTAVGVKQQRFVYDSFDNLVGYYSDDGNYYCVRPCVSVPVSVIYDKST 672 Query 601 NLHATLFGSVACEHVTTMMSQFSRLTQSNLRRRDSNIPLQTAVGCVIGLSNNSLVVSDCK 660 NLHATLFGSVACEHVTTMMSQFSRLTQSNLRRRDSNIPLQTAVGCVIGLSNNSLVVSDCK Sbjct 673 NLHATLFGSVACEHVTTMMSQFSRLTQSNLRRRDSNIPLQTAVGCVIGLSNNSLVVSDCK 732 Query 661 LPLGQSLCAVPPVS 674 LPLGQSLCAVPPVS Sbjct 733 LPLGQSLCAVPPVS 746 >RecName: Full=Spike glycoprotein; Short=S glycoprotein; AltName: Full=E2; AltName: Full=Peplomer protein; Contains: RecName: Full=Spike protein S1; Contains: RecName: Full=Spike protein S2; Contains: RecName: Full=Spike protein S2'; Flags: Precursor [Bat coronavirus (BtCoV/133/2005)] Sequence ID: Q0Q4F2.1 Length: 1350 Range 1: 73 to 746 Score:1345 bits(3480), Expect:0.0, Method:Compositional matrix adjust., Identities:648/674(96%), Positives:660/674(97%), Gaps:0/674(0%) Query 1 TLAYTGLFPLQGDLGSQYLYSVSHAVGHDGDPTKAYISNYSLLVNDFDNGFVVRIGAAAN 60 TL YTGLFPLQGDLG QYLYSVSHAVG+DGDPTKAYISNYSLLVNDFDNGFVVRIGAAAN Sbjct 73 TLEYTGLFPLQGDLGMQYLYSVSHAVGNDGDPTKAYISNYSLLVNDFDNGFVVRIGAAAN 132 Query 61 STGTIVISPSVNTKIKKAYPAFILGSSLTNTSAGQPLYANYSLTIIPDGCGTVLHAFYCI 120 STGTIVISPSVNTKIKKAYPAFILGSSLTNTSAG+PLYANYSLTIIPDGCGTVLHAFYCI Sbjct 133 STGTIVISPSVNTKIKKAYPAFILGSSLTNTSAGKPLYANYSLTIIPDGCGTVLHAFYCI 192 Query 121 LKPRTVNRCPSGTGYVSYFIYETVHNDCQSTINRNASLNSFKSFFDLVNCTFFNSWDITA 180 LKPRT NRCPSG+ Y +YFIYET+H+DCQSTINRNASLNSFKSFFDLVNCTFFNSWDITA Sbjct 193 LKPRTGNRCPSGSDYNAYFIYETIHSDCQSTINRNASLNSFKSFFDLVNCTFFNSWDITA 252 Query 181 DETKEWFGITQDTQGVHLYSSRKGDLYGGNMFRFATLPVYEGIKYYTVIPRSFRSKANKR 240 DETKEWFGITQDTQGVHL+SSRKGDLYGGNMFRFATLPVYEGIKYYTVIPRSFRSKANKR Sbjct 253 DETKEWFGITQDTQGVHLHSSRKGDLYGGNMFRFATLPVYEGIKYYTVIPRSFRSKANKR 312 Query 241 EAWAAFYVYKLHQLTYLLDFSVDGYIRRAIDCGHDDLSQLHCSYTSFEVDTGVYSVSSYE 300 EAWAAFYVYKLHQLTYLLDFSVDGYIRRAIDCGHDDLSQLHCSYTSFEVDTGVYSVSSYE Sbjct 313 EAWAAFYVYKLHQLTYLLDFSVDGYIRRAIDCGHDDLSQLHCSYTSFEVDTGVYSVSSYE 372 Query 301 ASATGTFIEQPNATECDFSPMLTGVAPQVYNFKRLVFSNCNYNLTKLLSLFAVDEFSCNG 360 ASATGTFIEQPN TECDFSPMLTGVAPQVYNFKRLVFSNCNYNLTKLLSLFAVDEFSCNG Sbjct 373 ASATGTFIEQPNVTECDFSPMLTGVAPQVYNFKRLVFSNCNYNLTKLLSLFAVDEFSCNG 432 Query 361 ISPDSIARGCYSTLTVDYFAYPLSMKSYIRPGSAGNIPLYNYKQSFANPTCRVMASVLAN 420 ISPD+IARGCYSTLTVDYFAYPLSMKSYIRPGSAGNIPLYNYKQSFANPTCRVMASV N Sbjct 433 ISPDAIARGCYSTLTVDYFAYPLSMKSYIRPGSAGNIPLYNYKQSFANPTCRVMASVPDN 492 Query 421 VTITKPHAYGYISKCSRLTGANQDVETPLYINPGEYSICRDFSPGGFSEDGQVFKRTLTQ 480 VTITKP AYGYISKCSRLTG NQD+ETPLYINPGEYSICRDF+P GFSEDGQVFKRTLTQ Sbjct 493 VTITKPGAYGYISKCSRLTGVNQDIETPLYINPGEYSICRDFAPLGFSEDGQVFKRTLTQ 552 Query 481 FEGGGLLIGVGTRVPMTDNLQMSFIISVQYGTGTDSVCPMLDLGDSLTITNRLGKCVDYS 540 FEGGGLLIGVGTRVPMT NL+M F+ISVQYGTGTDSVCPMLDLGDSLTITNRLGKCVDYS Sbjct 553 FEGGGLLIGVGTRVPMTANLEMGFVISVQYGTGTDSVCPMLDLGDSLTITNRLGKCVDYS 612 Query 541 LYGVTGRGVFQNCTAVGVKQQRFVYDSFDNLVGYYSDDGNYYCVRPCVSVPVSVIYDKST 600 LYGVTGRGVFQNCTAVGVKQQRFVYDSFDNLVGYYSDDGNYYCVRPCVSVPVSVIYDKST Sbjct 613 LYGVTGRGVFQNCTAVGVKQQRFVYDSFDNLVGYYSDDGNYYCVRPCVSVPVSVIYDKST 672 Query 601 NLHATLFGSVACEHVTTMMSQFSRLTQSNLRRRDSNIPLQTAVGCVIGLSNNSLVVSDCK 660 NLHATLFGSVACEHVTTMMSQFSRLTQSNLRRRDSN PLQTAVGCVIGLSNNSLVVSDCK Sbjct 673 NLHATLFGSVACEHVTTMMSQFSRLTQSNLRRRDSNTPLQTAVGCVIGLSNNSLVVSDCK 732 Query 661 LPLGQSLCAVPPVS 674 LPLGQSLCAVPPVS Sbjct 733 LPLGQSLCAVPPVS 746 >RecName: Full=Spike glycoprotein; Short=S glycoprotein; AltName: Full=E2; AltName: Full=Peplomer protein; Contains: RecName: Full=Spike protein S1; Contains: RecName: Full=Spike protein S2; Contains: RecName: Full=Spike protein S2'; Flags: Precursor [Betacoronavirus England 1] Sequence ID: K9N5Q8.1 Length: 1353 Range 1: 68 to 739 Score:874 bits(2258), Expect:0.0, Method:Compositional matrix adjust., Identities:425/675(63%), Positives:520/675(77%), Gaps:7/675(1%) Query 1 TLAYTGLFPLQGDLGSQYLYSVSHAVGHDGDPTKAYISNYSLLVNDFDNGFVVRIGAAAN 60 T+ Y GLFP QGD G Y+YS HA G P K +++NYS V F NGFVVRIGAAAN Sbjct 68 TITYQGLFPYQGDHGDMYVYSAGHATGTT--PQKLFVANYSQDVKQFANGFVVRIGAAAN 125 Query 61 STGTIVISPSVNTKIKKAYPAFILGSSLTNTSAGQP-LYANYSLTIIPDGCGTVLHAFYC 119 STGT++ISPS + I+K YPAF+LGSS+ N S G+ + N++L ++PDGCGT+L AFYC Sbjct 126 STGTVIISPSTSATIRKIYPAFMLGSSVGNFSDGKMGRFFNHTLVLLPDGCGTLLRAFYC 185 Query 120 ILKPRTVNRCPSGTGYVSYFIYETVHNDCQS-TINRNASLNSFKSFFDLVNCTFFNSWDI 178 IL+PR+ N CP+G Y S+ Y T DC NRNASLNSFK +F+L NCTF +++I Sbjct 186 ILEPRSGNHCPAGNSYTSFATYHTPATDCSDGNYNRNASLNSFKEYFNLRNCTFMYTYNI 245 Query 179 TADETKEWFGITQDTQGVHLYSSRKGDLYGGNMFRFATLPVYEGIKYYTVIPRSFRSKAN 238 T DE EWFGITQ QGVHL+SSR DLYGGNMF+FATLPVY+ IKYY++IP S RS + Sbjct 246 TEDEILEWFGITQTAQGVHLFSSRYVDLYGGNMFQFATLPVYDTIKYYSIIPHSIRSIQS 305 Query 239 KREAWAAFYVYKLHQLTYLLDFSVDGYIRRAIDCGHDDLSQLHCSYTSFEVDTGVYSVSS 298 R+AWAAFYVYKL LT+LLDFSVDGYIRRAIDCG +DLSQLHCSY SF+V++GVYSVSS Sbjct 306 DRKAWAAFYVYKLQPLTFLLDFSVDGYIRRAIDCGFNDLSQLHCSYESFDVESGVYSVSS 365 Query 299 YEASATGTFIEQPNATECDFSPMLTGVAPQVYNFKRLVFSNCNYNLTKLLSLFAVDEFSC 358 +EA +G+ +EQ ECDFSP+L+G PQVYNFKRLVF+NCNYNLTKLLSLF+V++F+C Sbjct 366 FEAKPSGSVVEQAEGVECDFSPLLSGTPPQVYNFKRLVFTNCNYNLTKLLSLFSVNDFTC 425 Query 359 NGISPDSIARGCYSTLTVDYFAYPLSMKSYIRPGSAGNIPLYNYKQSFANPTCRVMASVL 418 + ISP +IA CYS+L +DYF+YPLSMKS + SAG I +NYKQSF+NPTC ++A+V Sbjct 426 SQISPAAIASNCYSSLILDYFSYPLSMKSDLSVSSAGPISQFNYKQSFSNPTCLILATVP 485 Query 419 ANV-TITKPHAYGYISKCSRLTGANQDVETPLYINPGEYSICRDFSPGGFSEDGQVFKRT 477 N+ TITKP Y YI+KCSR ++ E P +N +YS C P EDG +++ Sbjct 486 HNLTTITKPLKYSYINKCSRFL-SDDRTEVPQLVNANQYSPCVSIVPSTVWEDGDYYRKQ 544 Query 478 LTQFEGGGLLIGVGTRVPMTDNLQMSFIISVQYGTGTDSVCPMLDLGDSLTITNRLGKCV 537 L+ EGGG L+ G+ V MT+ LQM F I+VQYGT T+SVCP L+ + I ++LG CV Sbjct 545 LSPLEGGGWLVASGSTVAMTEQLQMGFGITVQYGTDTNSVCPKLEFANDTKIASQLGNCV 604 Query 538 DYSLYGVTGRGVFQNCTAVGVKQQRFVYDSFDNLVGYYSDDGNYYCVRPCVSVPVSVIYD 597 +YSLYGV+GRGVFQNCTAVGV+QQRFVYD++ NLVGYYSDDGNYYC+R CVSVPVSVIYD Sbjct 605 EYSLYGVSGRGVFQNCTAVGVRQQRFVYDAYQNLVGYYSDDGNYYCLRACVSVPVSVIYD 664 Query 598 KSTNLHATLFGSVACEHVTTMMSQFSRLTQSNLRRRDSNI-PLQTAVGCVIGLSNNSLVV 656 K T HATLFGSVACEH+++ MSQ+SR T+S L+RRDS PLQT VGCV+GL N+SL V Sbjct 665 KETKTHATLFGSVACEHISSTMSQYSRSTRSMLKRRDSTYGPLQTPVGCVLGLVNSSLFV 724 Query 657 SDCKLPLGQSLCAVP 671 DCKLPLGQSLCA+P Sbjct 725 EDCKLPLGQSLCALP 739 >RecName: Full=Spike glycoprotein; Short=S glycoprotein; AltName: Full=E2; AltName: Full=Peplomer protein; Contains: RecName: Full=Spike protein S1; Contains: RecName: Full=Spike protein S2; Contains: RecName: Full=Spike protein S2'; Flags: Precursor [Pipistrellus bat coronavirus HKU5] Sequence ID: A3EXD0.1 Length: 1352 Range 1: 75 to 739 Score:833 bits(2152), Expect:0.0, Method:Compositional matrix adjust., Identities:412/678(61%), Positives:505/678(74%), Gaps:17/678(2%) Query 1 TLAYTGLFPLQGDLGSQYLYSVSHAVGHDGDPTKAYISNYSLLVNDFDNGFVVRIGAAAN 60 TL YTGL+P DLG QYL+S H+ G ++SNYS V FD+GFVVRIGAAAN Sbjct 75 TLTYTGLYPKANDLGKQYLFSDGHSA--PGRLNNLFVSNYSSQVESFDDGFVVRIGAAAN 132 Query 61 STGTIVISPSVNTKIKKAYPAFILGSSLTNTSAGQPL--YANYSLTIIPDGCGTVLHAFY 118 TGT VIS S IKK YPAF+LG S+ N + Y N++L I+PDGCGT+LHAFY Sbjct 133 KTGTTVISQSTFKPIKKIYPAFLLGHSVGNYTPSNRTGRYLNHTLVILPDGCGTILHAFY 192 Query 119 CILKPRTVNRCPSGTGYVSYFIYETVHNDCQS-TINRNASLNSFKSFFDLVNCTFFNSWD 177 C+L PRT C T + S +++T +DC S + N+ A+L +FK +FDL+NCTF ++ Sbjct 193 CVLHPRTQQNCAGETNFKSLSLWDTPASDCVSGSYNQEATLGAFKVYFDLINCTFRYNYT 252 Query 178 ITADETKEWFGITQDTQGVHLYSSRKGDLYGGNMFRFATLPVYEGIKYYTVIPRSFRSKA 237 IT DE EWFGITQDTQGVHLYSSRK +++ NMF FATLPVY+ I YYTVIPRS RS Sbjct 253 ITEDENAEWFGITQDTQGVHLYSSRKENVFRNNMFHFATLPVYQKILYYTVIPRSIRSPF 312 Query 238 NKREAWAAFYVYKLHQLTYLLDFSVDGYIRRAIDCGHDDLSQLHCSYTSFEVDTGVYSVS 297 N R+AWAAFY+YKLH LTYLL+F V+GYI +A+DCG+DDL+QL CSY SFEV+TGVYSVS Sbjct 313 NDRKAWAAFYIYKLHPLTYLLNFDVEGYITKAVDCGYDDLAQLQCSYESFEVETGVYSVS 372 Query 298 SYEASATGTFIEQPNATECDFSPMLTGVAPQVYNFKRLVFSNCNYNLTKLLSLFAVDEFS 357 S+EAS G FIEQ ECDF+PMLTG P +YNFKRLVF+NCNYNLTKLLSLF V EFS Sbjct 373 SFEASPRGEFIEQATTQECDFTPMLTGTPPPIYNFKRLVFTNCNYNLTKLLSLFQVSEFS 432 Query 358 CNGISPDSIARGCYSTLTVDYFAYPLSMKSYIRPGSAGNIPLYNYKQSFANPTCRVMASV 417 C+ +SP S+A GCYS+LTVDYFAY M SY++PGSAG I +NYKQ F+NPTCRV+A+V Sbjct 433 CHQVSPSSLATGCYSSLTVDYFAYSTDMSSYLQPGSAGAIVQFNYKQDFSNPTCRVLATV 492 Query 418 LANV-TITKPHAYGYISKCSRLTGANQDVETPLYINPGEYSICRDFSPGGFSEDGQVFKR 476 N+ TITKP Y Y+++C + + ++ LY PG Y+ C + GFS Sbjct 493 PQNLTTITKPSNYAYLTECYKTSAYGKNY---LYNAPGAYTPCLSLASRGFS-------- 541 Query 477 TLTQFEGGGLLIGVGTRVPMTDNLQMSFIISVQYGTGTDSVCPMLDLGDSLTITNRLGKC 536 T Q G L G P+T NLQM+FIISVQYGT T+SVCPM L + +I ++L C Sbjct 542 TKYQSHSDGELTTTGYIYPVTGNLQMAFIISVQYGTDTNSVCPMQALRNDTSIEDKLDVC 601 Query 537 VDYSLYGVTGRGVFQNCTAVGVKQQRFVYDSFDNLVGYYSDDGNYYCVRPCVSVPVSVIY 596 V+YSL+G+TGRGVF NCT+VG++ QRFVYD+FDNLVGY+SD+GNYYCVRPCVSVPVSVIY Sbjct 602 VEYSLHGITGRGVFHNCTSVGLRNQRFVYDTFDNLVGYHSDNGNYYCVRPCVSVPVSVIY 661 Query 597 DKSTNLHATLFGSVACEHVTTMMSQFSRLTQSNLRRRDSNIPLQTAVGCVIGLSNNSLVV 656 DK++N HATLFGSVAC HVTTMMSQFSR+T++NL R + PLQT VGC +G N+S+VV Sbjct 662 DKASNSHATLFGSVACSHVTTMMSQFSRMTKTNLLARTTPGPLQTTVGCAMGFINSSMVV 721 Query 657 SDCKLPLGQSLCAVPPVS 674 +C+LPLGQSLCA+PP + Sbjct 722 DECQLPLGQSLCAIPPTT 739 >RecName: Full=Spike glycoprotein; Short=S glycoprotein; AltName: Full=E2; AltName: Full=Peplomer protein; Contains: RecName: Full=Spike protein S1; Contains: RecName: Full=Spike protein S2; Contains: RecName: Full=Spike protein S2'; Flags: Precursor [Murine hepatitis virus strain JHM] Sequence ID: P11225.1 Length: 1235 Range 1: 258 to 617 Score:128 bits(322), Expect:2e-29, Method:Compositional matrix adjust., Identities:114/430(27%), Positives:181/430(42%), Gaps:77/430(17%) Query 246 FYVYKLHQLTYLLDFSVDGYIRRAIDCGHDDLSQLHCSYTSFEVDTGVYSVSSYEASATG 305 ++V L + YL +F+ G I A+DC +S++ C S TGVY +S Y G Sbjct 258 YWVTPLLKRQYLFNFNEKGVITSAVDCASSYISEIKCKTQSLLPSTGVYDLSGYTVQPVG 317 Query 306 TFIEQ-PNATECDFSPMLTGVA-PQVYNFKRLVFSNCNYNLTKLLSLFAVDEFSCNGISP 363 + PN +C LT + P N++R F NCN+NL+ LL + SCN I Sbjct 318 VVYRRVPNLPDCKIEEWLTAKSVPSPLNWERRTFQNCNFNLSSLLRYVQAESLSCNNIDA 377 Query 364 DSIARGCYSTLTVDYFAYPLSMKSYIRPGSAGNIPLYNYKQSFANPTCRVMASVLA-NVT 422 + C+ +++VD FA P S + ++ G++G + NYK A +C++ S+ NVT Sbjct 378 SKVYGMCFGSVSVDKFAIPRSRQIDLQIGNSGFLQTANYKIDTAATSCQLYYSLPKNNVT 437 Query 423 ITKPHAYGYISKCSRLTGANQDVETPLYINPGEYSICRDFSPGGFSEDGQVFKRTLTQFE 482 I NP ++ F ++ Q+F Sbjct 438 INN-------------------------YNPSSWNRRYGFK---VNDRCQIFANI----- 464 Query 483 GGGLLIGVGTRVPMTDNLQMSFIISVQYGTGTDSVCPMLDLGDSLTITNRLGKCVDYSLY 542 LL G+ + + +LQ+ + + TG CV Y LY Sbjct 465 ---LLNGINSGTTCSTDLQLP---NTEVATGV---------------------CVRYDLY 497 Query 543 GVTGRGVFQNCTAVGVKQ-QRFVYDSFDNLVGYYSDDGNY-YCVRPCVSVPVSVIYDKST 600 G+TG+GVF+ A Q +YD NL G+ N Y +R C S VS Y K Sbjct 498 GITGQGVFKEVKADYYNSWQALLYDVNGNLNGFRDLTTNKTYTIRSCYSGRVSAAYHKEA 557 Query 601 NLHATLFGSVACEHVTTMMSQFSRLTQSNLRRRDSNIP-LQTAVGCVIGLSNNS-LVVSD 658 A L+ ++ C +V T +N+ R ++ + + +GCV+ N + + + Sbjct 558 PEPALLYRNINCSYVFT----------NNISREENPLNYFDSYLGCVVNADNRTDEALPN 607 Query 659 CKLPLGQSLC 668 C L +G LC Sbjct 608 CNLRMGAGLC 617 >RecName: Full=Spike glycoprotein; Short=S glycoprotein; AltName: Full=E2; AltName: Full=Peplomer protein; Contains: RecName: Full=Spike protein S1; Contains: RecName: Full=Spike protein S2; Contains: RecName: Full=Spike protein S2'; Flags: Precursor [Human coronavirus HKU1 (isolate N2)] Sequence ID: Q14EB0.1 Length: 1351 Range 1: 173 to 436 Score:125 bits(314), Expect:2e-28, Method:Compositional matrix adjust., Identities:86/267(32%), Positives:133/267(49%), Gaps:21/267(7%) Query 175 SWDITADETKEWF------GITQDTQGVHLYSSRK------GDLYGGNMFRFATLPVYEG 222 SW I + E F ++ D H Y R D+ F F+ +Y G Sbjct 173 SWHIDSSEPLCLFKKNFTYNVSADWLYFHFYQERGVFYAYYADVGMPTTFLFS---LYLG 229 Query 223 --IKYYTVIPRSFRS-KANKREAWAAFYVYKLHQLTYLLDFSVDGYIRRAIDCGHDDLSQ 279 + +Y V+P + ++ +N ++V L + YLL+F G I A+DC LS+ Sbjct 230 TILSHYYVMPLTCKAISSNTDNETLEYWVTPLSRRQYLLNFDEHGVITNAVDCSSSFLSE 289 Query 280 LHCSYTSFEVDTGVYSVSSYEASATGTFIEQ-PNATECDFSPMLTGVA-PQVYNFKRLVF 337 + C SF +TGVY +S + T + PN +CD L V+ P N++R +F Sbjct 290 IQCKTQSFAPNTGVYDLSGFTVKPVATVYRRIPNLPDCDIDNWLNNVSVPSPLNWERRIF 349 Query 338 SNCNYNLTKLLSLFAVDEFSCNGISPDSIARGCYSTLTVDYFAYPLSMKSYIRPGSAGNI 397 SNCN+NL+ LL L VD FSCN + I C++++TVD FA P + ++ GS+G + Sbjct 350 SNCNFNLSTLLRLVHVDSFSCNNLDKSKIFGSCFNSITVDKFAIPNRRRDDLQLGSSGFL 409 Query 398 PLYNYKQSFANPTCRVMASV-LANVTI 423 NYK ++ +C++ S+ L NVTI Sbjct 410 QSSNYKIDISSSSCQLYYSLPLVNVTI 436 Range 2: 617 to 743 Score:57.8 bits(138), Expect:3e-07, Method:Compositional matrix adjust., Identities:42/138(30%), Positives:68/138(49%), Gaps:14/138(10%) Query 534 GKCVDYSLYGVTGRGVFQNCTAVGVKQ-QRFVYDSFDNLVGYYSDDGNY-YCVRPCVSVP 591 G CV+Y LYG+TG+G+F+ +A Q +YDS N++G+ N Y + PC S Sbjct 617 GVCVNYDLYGITGQGIFKEVSAAYYNNWQNLLYDSNGNIIGFKDFLTNKTYTILPCYSGR 676 Query 592 VSVIYDKSTNLHATLFGSVACEHVTTMMSQFSRLTQSNLRRRDSNIPLQTAVGCVIGLSN 651 VS + ++++ A L+ ++ C +V +S S+ + +GCV+ N Sbjct 677 VSAAFYQNSSSPALLYRNLKCSYVLNNISFISQ-----------PFYFDSYLGCVLNAVN 725 Query 652 -NSLVVSDCKLPLGQSLC 668 S VS C L +G C Sbjct 726 LTSYSVSSCDLRMGSGFC 743 >RecName: Full=Spike glycoprotein; Short=S glycoprotein; AltName: Full=E2; AltName: Full=Peplomer protein; Contains: RecName: Full=Spike protein S1; Contains: RecName: Full=Spike protein S2; Contains: RecName: Full=Spike protein S2'; Flags: Precursor [Human coronavirus HKU1 (isolate N5)] Sequence ID: Q0ZME7.1 Length: 1351 Range 1: 173 to 436 Score:124 bits(311), Expect:5e-28, Method:Compositional matrix adjust., Identities:86/267(32%), Positives:132/267(49%), Gaps:21/267(7%) Query 175 SWDITADETKEWF------GITQDTQGVHLYSSRK------GDLYGGNMFRFATLPVYEG 222 SW I + E F ++ D H Y R D+ F F+ +Y G Sbjct 173 SWHIDSSEPLCLFKKNFTYNVSADWLYFHFYQERGVFYAYYADVGMPTTFLFS---LYLG 229 Query 223 --IKYYTVIPRSFRS-KANKREAWAAFYVYKLHQLTYLLDFSVDGYIRRAIDCGHDDLSQ 279 + +Y V+P + + +N ++V L + YLL+F G I A+DC LS+ Sbjct 230 TILSHYYVMPLTCNAISSNTDNETLEYWVTPLSRRQYLLNFDEHGVITNAVDCSSSFLSE 289 Query 280 LHCSYTSFEVDTGVYSVSSYEASATGTFIEQ-PNATECDFSPMLTGVA-PQVYNFKRLVF 337 + C SF +TGVY +S + T + PN +CD L V+ P N++R +F Sbjct 290 IQCKTQSFAPNTGVYDLSGFTVKPVATVYRRIPNLPDCDIDNWLNNVSVPSPLNWERRIF 349 Query 338 SNCNYNLTKLLSLFAVDEFSCNGISPDSIARGCYSTLTVDYFAYPLSMKSYIRPGSAGNI 397 SNCN+NL+ LL L VD FSCN + I C++++TVD FA P + ++ GS+G + Sbjct 350 SNCNFNLSTLLRLVHVDSFSCNNLDKSKIFGSCFNSITVDKFAIPNRRRDDLQLGSSGFL 409 Query 398 PLYNYKQSFANPTCRVMASV-LANVTI 423 NYK ++ +C++ S+ L NVTI Sbjct 410 QSSNYKIDISSSSCQLYYSLPLVNVTI 436 Range 2: 617 to 743 Score:57.8 bits(138), Expect:3e-07, Method:Compositional matrix adjust., Identities:42/138(30%), Positives:68/138(49%), Gaps:14/138(10%) Query 534 GKCVDYSLYGVTGRGVFQNCTAVGVKQ-QRFVYDSFDNLVGYYSDDGNY-YCVRPCVSVP 591 G CV+Y LYG+TG+G+F+ +A Q +YDS N++G+ N Y + PC S Sbjct 617 GVCVNYDLYGITGQGIFKEVSAAYYNNWQNLLYDSNGNIIGFKDFLTNKTYTILPCYSGR 676 Query 592 VSVIYDKSTNLHATLFGSVACEHVTTMMSQFSRLTQSNLRRRDSNIPLQTAVGCVIGLSN 651 VS + ++++ A L+ ++ C +V +S S+ + +GCV+ N Sbjct 677 VSAAFYQNSSSPALLYRNLKCSYVLNNISFISQ-----------PFYFDSYLGCVLNAVN 725 Query 652 -NSLVVSDCKLPLGQSLC 668 S VS C L +G C Sbjct 726 LTSYSVSSCDLRMGSGFC 743 >RecName: Full=Spike glycoprotein; Short=S glycoprotein; AltName: Full=E2; AltName: Full=Peplomer protein; Contains: RecName: Full=Spike protein S1; Contains: RecName: Full=Spike protein S2; Contains: RecName: Full=Spike protein S2'; Flags: Precursor [Murine hepatitis virus strain A59] Sequence ID: P11224.2 Length: 1324 Range 1: 155 to 706 Score:120 bits(300), Expect:1e-26, Method:Compositional matrix adjust., Identities:145/572(25%), Positives:232/572(40%), Gaps:61/572(10%) Query 138 YFIYETVHNDCQSTINRNASLNSFKSFFDLVNCTFFNSWDITADETKEWFGITQDTQGVH 197 Y I + + DC+ N N + + + C ++ + + +F Q + Sbjct 155 YTICQLPYTDCKPNTNGNKLIGFWHTDVKPPICVLKRNFTLNVNADAFYFHFYQHGGTFY 214 Query 198 LYSSRKGDLYGGNMFRFATLPVYEG--IKYYTVIPRSFRSKANKREAWAAFYVYKLHQLT 255 Y + K F F+ VY G + Y V+P A A ++V L + Sbjct 215 AYYADKP---SATTFLFS---VYIGDILTQYYVLPFICNPTAGSTFA-PRYWVTPLVKRQ 267 Query 256 YLLDFSVDGYIRRAIDCGHDDLSQLHCSYTSFEVDTGVYSVSSYEASATGTFIEQ-PNAT 314 YL +F+ G I A+DC S++ C S TGVY +S Y G + N Sbjct 268 YLFNFNQKGVITSAVDCASSYTSEIKCKTQSMLPSTGVYELSGYTVQPVGVVYRRVANLP 327 Query 315 ECDFSPMLTGVA-PQVYNFKRLVFSNCNYNLTKLLSLFAVDEFSCNGISPDSIARGCYST 373 C+ LT + P N++R F NCN+NL+ LL + CN I + C+ + Sbjct 328 ACNIEEWLTARSVPSPLNWERKTFQNCNFNLSSLLRYVQAESLFCNNIDASKVYGRCFGS 387 Query 374 LTVDYFAYPLSMKSYIRPGSAGNIPLYNYKQSFANPTCRVMASVLA-NVTIT--KPHAYG 430 ++VD FA P S + ++ G++G + NYK A +C++ ++ NVTI P ++ Sbjct 388 ISVDKFAVPRSRQVDLQLGNSGFLQTANYKIDTAATSCQLHYTLPKNNVTINNHNPSSWN 447 Query 431 --YISKCSRLTGANQ-DVETPLYINPGEYSICRDFSPGGFS------EDGQVFKRTLTQF 481 Y + + G NQ DV S C P S + F Sbjct 448 RRYGFNDAGVFGKNQHDVVYAQQCFTVRSSYCPCAQPDIVSPCTTQTKPKSAFVNVGDHC 507 Query 482 EGGGLL--------------------IGVGTRVPMTDNLQMSFIISVQYGTGTDSVCPM- 520 EG G+L IG + ++ F + G + + C Sbjct 508 EGLGVLEDNCGNADPHKGCICANNSFIGWSHDTCLVNDRCQIFANILLNGINSGTTCSTD 567 Query 521 LDLGDSLTITNRLGKCVDYSLYGVTGRGVFQNCTAVGVKQ-QRFVYDSFDNLVGYYSDDG 579 L L ++ +T G CV Y LYG+TG+GVF+ A Q +YD NL G+ Sbjct 568 LQLPNTEVVT---GICVKYDLYGITGQGVFKEVKADYYNSWQTLLYDVNGNLNGFRDLTT 624 Query 580 NY-YCVRPCVSVPVSVIYDKSTNLHATLFGSVACEHVTTMMSQFSRLTQSNLRRRDSNIP 638 N Y +R C S VS + K A L+ ++ C +V FS +N+ R ++ + Sbjct 625 NKTYTIRSCYSGRVSAAFHKDAPEPALLYRNINCSYV------FS----NNISREENPLN 674 Query 639 -LQTAVGCVIGLSNNS-LVVSDCKLPLGQSLC 668 + +GCV+ N + + +C L +G LC Sbjct 675 YFDSYLGCVVNADNRTDEALPNCDLRMGAGLC 706 >RecName: Full=Spike glycoprotein; Short=S glycoprotein; AltName: Full=E2; AltName: Full=Peplomer protein; Contains: RecName: Full=Spike protein S1; Contains: RecName: Full=Spike protein S2; Contains: RecName: Full=Spike protein S2'; Flags: Precursor [Human coronavirus OC43] Sequence ID: P36334.1 Length: 1353 Range 1: 95 to 446 Score:112 bits(279), Expect:4e-24, Method:Compositional matrix adjust., Identities:107/398(27%), Positives:178/398(44%), Gaps:61/398(15%) Query 43 LVNDFDNGFVVRIGAAANSTGTIVISPSVNTKIKKAYPAFILGSSLTNTSAGQPLYANYS 102 ++DF NG ++ T VI V + +PA +GS+ NTS YS Sbjct 95 FLSDFINGIFAKV------KNTKVIKDRV---MYSEFPAITIGSTFVNTS--------YS 137 Query 103 LTIIPDGCGTVLHAFYCILKPRTVNRCPSGTGYVSYFIYETV--HNDCQ--STINRNASL 158 + +++PRT+N G + + +V +N C+ TI Sbjct 138 V----------------VVQPRTINSTQDGDNKLQGLLEVSVCQYNMCEYPQTICHPNLG 181 Query 159 NSFKSFFDL----VNCTFFN--SWDITADETKEWFGITQDTQGVHLYSSRKGDLYGGNMF 212 N K + L V+C + ++D+ AD +F Q+ + Y + G + F Sbjct 182 NHRKELWHLDTGVVSCLYKRNFTYDVNADYL--YFHFYQEGGTFYAYFTDTGVV---TKF 236 Query 213 RFATLPVYEG--IKYYTVIPRSFRSKANKREAWAAFYVYKLHQLTYLLDFSVDGYIRRAI 270 F VY G + +Y V+P + SK ++V L YLL F+ DG I A Sbjct 237 LFN---VYLGMALSHYYVMPLTCNSKLTLE-----YWVTPLTSRQYLLAFNQDGIIFNAE 288 Query 271 DCGHDDLSQLHCSYTSFEVDTGVYSVSSYEASATG-TFIEQPNATECDFSPMLTGVA-PQ 328 DC D +S++ C S TGVY ++ Y + +PN C+ L + P Sbjct 289 DCMSDFMSEIKCKTQSIAPPTGVYELNGYTVQPIADVYRRKPNLPNCNIEAWLNDKSVPS 348 Query 329 VYNFKRLVFSNCNYNLTKLLSLFAVDEFSCNGISPDSIARGCYSTLTVDYFAYPLSMKSY 388 N++R FSNCN+N++ L+S D F+CN I I C+S++T+D FA P K Sbjct 349 PLNWERKTFSNCNFNMSSLMSFIQADSFTCNNIDAAKIYGMCFSSITIDKFAIPNGRKVD 408 Query 389 IRPGSAGNIPLYNYKQSFANPTCRVMASV-LANVTITK 425 ++ G+ G + +NY+ +C++ ++ ANV++++ Sbjct 409 LQLGNLGYLQSFNYRIDTTATSCQLYYNLPAANVSVSR 446 Range 2: 618 to 747 Score:52.8 bits(125), Expect:1e-05, Method:Compositional matrix adjust., Identities:41/139(29%), Positives:64/139(46%), Gaps:12/139(8%) Query 533 LGKCVDYSLYGVTGRGVFQNCTAVGVKQ-QRFVYDSFDNLVGYYSDDGNY-YCVRPCVSV 590 LG CV+Y LYG+ G+G+F A Q +YDS NL G+ N + +R C S Sbjct 618 LGVCVNYDLYGILGQGIFVEVNATYYNSWQNLLYDSNGNLYGFRDYIINRTFMIRSCYSG 677 Query 591 PVSVIYDKSTNLHATLFGSVACEHVTTMMSQFSRLTQSNLRRRDSNIPLQTAVGCVIGLS 650 VS + +++ A LF ++ C +V S R+ + +GCV+ Sbjct 678 RVSAAFHANSSEPALLFRNIKCNYV---------FNNSLTRQLQPINYFDSYLGCVVNAY 728 Query 651 NNSLV-VSDCKLPLGQSLC 668 N++ + V C L +G C Sbjct 729 NSTAISVQTCDLTVGSGYC 747 >RecName: Full=Spike glycoprotein; Short=S glycoprotein; AltName: Full=E2; AltName: Full=Peplomer protein; Contains: RecName: Full=Spike protein S1; Contains: RecName: Full=Spike protein S2; Contains: RecName: Full=Spike protein S2'; Flags: Precursor [Bat SARS coronavirus HKU3] Sequence ID: Q3LZX1.1 Length: 1242 Range 1: 226 to 645 Score:110 bits(275), Expect:1e-23, Method:Compositional matrix adjust., Identities:122/462(26%), Positives:193/462(41%), Gaps:51/462(11%) Query 217 LPVYEGIKYYTVIPRSF-RSKANKREAWAAFYVYKLHQLTYLLDFSVDGYIRRAIDCGHD 275 LP I Y V+ F ++ +N AA+YV L T++L F+ +G I A+DC + Sbjct 226 LPFGINITSYRVVMAMFSQTTSNFLPESAAYYVGNLKYSTFMLRFNENGTITDAVDCSQN 285 Query 276 DLSQLHCSYTSFEVDTGVYSVSSYEASATGTFIEQPNAT-ECDFSPMLTGVA-PQVYNFK 333 L++L C+ +F VD G+Y S++ S T I PN T C F + P VY ++ Sbjct 286 PLAELKCTIKNFNVDKGIYQTSNFRVSPTQEVIRFPNITNRCPFDKVFNATRFPNVYAWE 345 Query 334 RLVFSNCNYNLTKLLSLFAVDEFSCNGISPDSIARGCYSTLTVDYFAYPLSMKSYIRPGS 393 R S+C + T L + + F C G+SP + C++++ D F S + PG Sbjct 346 RTKISDCVADYTVLYNSTSFSTFKCYGVSPSKLIDLCFTSVYADTFLIRSSEVRQVAPGE 405 Query 394 AGNIPLYNYKQSFANPTCRVMASVLANVTITKPHAYG-YISKCSRLTGANQDVETPLYIN 452 G I YNYK C + + T H G Y + R T + Sbjct 406 TGVIADYNYKLPDDFTGCVIAWN-------TAKHDTGNYYYRSHRKTK----------LK 448 Query 453 PGEYSICRDFSPGGFSEDGQ-VFKRTLTQFEGGGLLIGVGTRVPMTDNLQMSFIISVQYG 511 P E RD S S+DG V+ TL+ ++ VP+ ++S + Sbjct 449 PFE----RDLS----SDDGNGVY--TLSTYD-------FNPNVPVAYQATRVVVLSFELL 491 Query 512 TGTDSVCPMLDLGDSLTITNRLGKCVDYSLYGVTGRGVFQNCTAVGVKQQRFVYDSFDNL 571 +VC G L+ +CV+++ G+ G GV + + Q+F D+ D Sbjct 492 NAPATVC-----GPKLSTELVKNQCVNFNFNGLKGTGVLTSSSKRFQSFQQFGRDTSD-F 545 Query 572 VGYYSDDGNYYC--VRPCVSVPVSVIY--DKSTNLHATLFGSVACEHVTTMMSQFSRLTQ 627 D + PC VSVI +++ A L+ V C V T + Sbjct 546 TDSVRDPQTLEILDISPCSFGGVSVITPGTNASSEVAVLYQDVNCTDVPTAIRADQLTPA 605 Query 628 SNLRRRDSNIPLQTAVGCVIGLSNNSLVVSDCKLPLGQSLCA 669 + N+ QT GC+IG + + +C +P+G +CA Sbjct 606 WRVYSTGVNV-FQTQAGCLIGAEHVN-ASYECDIPIGAGICA 645 >RecName: Full=Spike glycoprotein; Short=S glycoprotein; AltName: Full=E2; AltName: Full=Peplomer protein; Contains: RecName: Full=Spike protein S1; Contains: RecName: Full=Spike protein S2; Contains: RecName: Full=Spike protein S2'; Flags: Precursor [Porcine hemagglutinating encephalomyelitis virus (strain IAF-404)] Sequence ID: Q8JSP8.1 Length: 1349 Range 1: 242 to 484 Score:110 bits(274), Expect:2e-23, Method:Compositional matrix adjust., Identities:76/248(31%), Positives:120/248(48%), Gaps:15/248(6%) Query 223 IKYYTVIPRSFRSKANKREAWAAFYVYKLHQLTYLLDFSVDGYIRRAIDCGHDDLSQLHC 282 + +Y V+P + S A E W V L +LL F DG + A+DC D +S++ C Sbjct 242 LSHYYVMPLTCDS-ALSLEYW----VTPLTTRQFLLAFDQDGVLYHAVDCASDFMSEIMC 296 Query 283 SYTSFEVDTGVYSVSSYEASATGTFIEQ-PNATECDFSPML-TGVAPQVYNFKRLVFSNC 340 +S TGVY ++ Y T + P+ CD L + N++R +FSNC Sbjct 297 KTSSITPPTGVYELNGYTVQPVATVYRRIPDLPNCDIEAWLNSKTVSSPLNWERKIFSNC 356 Query 341 NYNLTKLLSLFAVDEFSCNGISPDSIARGCYSTLTVDYFAYPLSMKSYIRPGSAGNIPLY 400 N+N+ +L+S D F CN I + C+ ++T+D FA P S K ++ G +G + + Sbjct 357 NFNMGRLMSFIQADSFGCNNIDASRLYGMCFGSITIDKFAIPNSRKVDLQVGKSGYLQSF 416 Query 401 NYKQSFANPTCRVMASV-LANVTITK------PHAYGYISKCSRLTGANQDVETPLYIN- 452 NYK A +C++ S+ ANV++T YG+I++ G + V + N Sbjct 417 NYKIDTAVSSCQLYYSLPAANVSVTHYNPSSWNRRYGFINQSFGSRGLHDAVYSQQCFNT 476 Query 453 PGEYSICR 460 P Y CR Sbjct 477 PNTYCPCR 484 Range 2: 617 to 743 Score:55.8 bits(133), Expect:1e-06, Method:Compositional matrix adjust., Identities:42/136(31%), Positives:65/136(47%), Gaps:12/136(8%) Query 536 CVDYSLYGVTGRGVFQNCTAVGVKQ-QRFVYDSFDNLVGYYSDDGNY-YCVRPCVSVPVS 593 CV+Y LYG+TG+G+ A Q +YDS NL G+ N + +R C S VS Sbjct 617 CVNYDLYGITGQGILIEVNATYYNSWQNLLYDSSGNLYGFRDYLSNRTFLIRSCYSGRVS 676 Query 594 VIYDKSTNLHATLFGSVACEHVTTMMSQFSRLTQSNLRRRDSNIPLQTAVGCVIGLSNNS 653 ++ +++ A +F ++ C HV ++ L Q L + +GCV+ NN+ Sbjct 677 AVFHANSSEPALMFRNLKCSHVF----NYTILRQIQLVNY-----FDSYLGCVVNAYNNT 727 Query 654 L-VVSDCKLPLGQSLC 668 VS C L +G C Sbjct 728 ASAVSTCDLTVGSGYC 743 >RecName: Full=Spike glycoprotein; Short=S glycoprotein; AltName: Full=E2; AltName: Full=Peplomer protein; Contains: RecName: Full=Spike protein S1; Contains: RecName: Full=Spike protein S2; Contains: RecName: Full=Spike protein S2'; Flags: Precursor [Porcine hemagglutinating encephalomyelitis virus (strain 67N)] Sequence ID: Q8BB25.1 Length: 1349 Range 1: 118 to 441 Score:109 bits(273), Expect:2e-23, Method:Compositional matrix adjust., Identities:100/361(28%), Positives:163/361(45%), Gaps:48/361(13%) Query 75 IKKAYPAFILGSSLTNTSAGQPLYANYSLTIIPDGCGTVLHAFYCILKPRTVNRCPSGTG 134 I +PA +GS+ NTS YS+ + P +N G Sbjct 118 IYSEFPAITIGSTFVNTS--------YSIVVEP--------------HTSLINGNLQGLL 155 Query 135 YVS---YFIYETVHNDCQSTI-NRNASLNSFKSFFDLVNCTFFN--SWDITADETKEWFG 188 +S Y + E H C + N+ L + + D+V+C + ++D+ AD +F Sbjct 156 QISVCQYTMCEYPHTICHPNLGNQRIELWHYDT--DVVSCLYRRNFTYDVNADYL--YFH 211 Query 189 ITQDTQGVHLYSSRKGDLYGGNMFRFATLPVYEG--IKYYTVIPRSFRSKANKREAWAAF 246 Q+ + Y + G + F F +Y G + +Y V+P + S A E W Sbjct 212 FYQEGGTFYAYFTDTGFV---TKFLFK---LYLGTVLSHYYVMPLTCNS-ALSLEYW--- 261 Query 247 YVYKLHQLTYLLDFSVDGYIRRAIDCGHDDLSQLHCSYTSFEVDTGVYSVSSYEASATGT 306 V L +LL F DG + A+DC D +S++ C +S TGVY ++ Y T Sbjct 262 -VTPLTTRQFLLAFDQDGVLYHAVDCASDFMSEIMCKTSSITPPTGVYELNGYTVQPVAT 320 Query 307 FIEQ-PNATECDFSPML-TGVAPQVYNFKRLVFSNCNYNLTKLLSLFAVDEFSCNGISPD 364 + P+ CD L + N++R +FSNCN+N+ +L+S D F CN I Sbjct 321 VYRRIPDLPNCDIEAWLNSKTVSSPLNWERKIFSNCNFNMGRLMSFIQADSFGCNNIDAS 380 Query 365 SIARGCYSTLTVDYFAYPLSMKSYIRPGSAGNIPLYNYKQSFANPTCRVMASV-LANVTI 423 + C+ ++T+D FA P S K ++ G +G + +NYK A +C++ S+ ANV++ Sbjct 381 RLYGMCFGSITIDKFAIPNSRKVDLQVGKSGYLQSFNYKIDTAVSSCQLYYSLPAANVSV 440 Query 424 T 424 T Sbjct 441 T 441 Range 2: 605 to 743 Score:56.2 bits(134), Expect:8e-07, Method:Compositional matrix adjust., Identities:44/153(29%), Positives:72/153(47%), Gaps:19/153(12%) Query 521 LDLGDSLTITNRLGKCVDYSLYGVTGRGVFQNCTAVGVKQ-QRFVYDSFDNLVGYYSDDG 579 L G+++ T+ CV+Y LYG+TG+G+ A Q +YDS NL G+ Sbjct 605 LQQGNTIITTD---VCVNYDLYGITGQGILIEVNATYYNSWQNLLYDSSGNLYGFRDYLS 661 Query 580 NY-YCVRPCVSVPVSVIYDKSTNLHATLFGSVACEHV--TTMMSQFSRLTQSNLRRRDSN 636 N + +R C S VS ++ +++ A +F ++ C HV T++ Q + Sbjct 662 NRTFLIRSCYSGRVSAVFHANSSEPALMFRNLKCSHVFNNTILRQIQLVNY--------- 712 Query 637 IPLQTAVGCVIGLSNNSL-VVSDCKLPLGQSLC 668 + +GCV+ NN+ VS C L +G C Sbjct 713 --FDSYLGCVVNAYNNTASAVSTCDLTVGSGYC 743 >RecName: Full=Spike glycoprotein; Short=S glycoprotein; AltName: Full=E2; AltName: Full=Peplomer protein; Contains: RecName: Full=Spike protein S1; Contains: RecName: Full=Spike protein S2; Contains: RecName: Full=Spike protein S2'; Flags: Precursor [Bovine coronavirus LY-138] Sequence ID: P25192.1 Length: 1363 Range 1: 95 to 442 Score:109 bits(273), Expect:2e-23, Method:Compositional matrix adjust., Identities:107/396(27%), Positives:176/396(44%), Gaps:61/396(15%) Query 43 LVNDFDNGFVVRIGAAANSTGTIVISPSVNTKIKKAYPAFILGSSLTNTSAGQPLYANYS 102 ++DF NG ++ T VI V + +PA +GS+ NTS YS Sbjct 95 FLSDFINGIFAKV------KNTKVIKNGV---MYSEFPAITIGSTFVNTS--------YS 137 Query 103 LTIIPDGCGTVLHAFYCILKPRTVNRCPSGTGYVS-----YFIYETVHNDCQSTI-NRNA 156 + +++P T N G + Y + E H C + NR Sbjct 138 V----------------VVQPHTTNLDNKLQGLLEISVCQYTMCEYPHTICHPNLGNRRI 181 Query 157 SLNSFKSFFDLVNCTFFN--SWDITADETKEWFGITQDTQGVHLYSSRKGDLYGGNMFRF 214 L + + +V+C + ++D+ AD +F Q+ + Y + G + F F Sbjct 182 ELWHWDT--GVVSCLYKRNFTYDVNADYL--YFHFYQEGGTFYAYFTDTGVV---TKFLF 234 Query 215 ATLPVYEG--IKYYTVIPRSFRSKANKREAWAAFYVYKLHQLTYLLDFSVDGYIRRAIDC 272 VY G + +Y V+P + S A E W V L YLL F+ DG I A+DC Sbjct 235 N---VYLGTVLSHYYVMPLTCNS-AMTLEYW----VTPLTSKQYLLAFNQDGVIFNAVDC 286 Query 273 GHDDLSQLHCSYTSFEVDTGVYSVSSYEASATGTFIEQ-PNATECDFSPMLTGVA-PQVY 330 D +S++ C S TGVY ++ Y + PN +C+ L + P Sbjct 287 KSDFMSEIKCKTLSIAPSTGVYELNGYTVQPIADVYRRIPNLPDCNIEAWLNDKSVPSPL 346 Query 331 NFKRLVFSNCNYNLTKLLSLFAVDEFSCNGISPDSIARGCYSTLTVDYFAYPLSMKSYIR 390 N++R FSNCN+N++ L+S D F+CN I I C+S++T+D FA P K ++ Sbjct 347 NWERKTFSNCNFNMSSLMSFIQADSFTCNNIDAAKIYGMCFSSITIDKFAIPNGRKVDLQ 406 Query 391 PGSAGNIPLYNYKQSFANPTCRVMASV-LANVTITK 425 G+ G + +NY+ +C++ ++ ANV++++ Sbjct 407 LGNLGYLQSFNYRIDTTATSCQLYYNLPAANVSVSR 442 Range 2: 628 to 757 Score:55.1 bits(131), Expect:2e-06, Method:Compositional matrix adjust., Identities:46/139(33%), Positives:67/139(48%), Gaps:12/139(8%) Query 533 LGKCVDYSLYGVTGRGVFQNCTAVGVKQ-QRFVYDSFDNLVGYYSDDGNY-YCVRPCVSV 590 LG CV+Y LYG+TG+G+F A Q +YDS NL G+ N + +R C S Sbjct 628 LGVCVNYDLYGITGQGIFVEVNATYYNSWQNLLYDSNGNLYGFRDYLTNRTFMIRSCYSG 687 Query 591 PVSVIYDKSTNLHATLFGSVACEHVTTMMSQFSRLTQSNLRRRDSNIPLQTAVGCVIGLS 650 VS + +++ A LF ++ C +V + SR Q + DS +GCV+ Sbjct 688 RVSAAFHANSSEPALLFRNIKCNYV--FNNTLSRQLQP-INYFDS------YLGCVVNAD 738 Query 651 NN-SLVVSDCKLPLGQSLC 668 N+ S V C L +G C Sbjct 739 NSTSSAVQTCDLTVGSGYC 757 >RecName: Full=Spike glycoprotein; Short=S glycoprotein; AltName: Full=E2; AltName: Full=Peplomer protein; Contains: RecName: Full=Spike protein S1; Contains: RecName: Full=Spike protein S2; Contains: RecName: Full=Spike protein S2'; Flags: Precursor [Bovine coronavirus strain Quebec] Sequence ID: P25193.2 Length: 1363 Range 1: 95 to 442 Score:109 bits(272), Expect:3e-23, Method:Compositional matrix adjust., Identities:106/396(27%), Positives:176/396(44%), Gaps:61/396(15%) Query 43 LVNDFDNGFVVRIGAAANSTGTIVISPSVNTKIKKAYPAFILGSSLTNTSAGQPLYANYS 102 ++DF NG ++ T VI V + +PA +GS+ NTS YS Sbjct 95 FLSDFINGIFAKV------KNTKVIKKGV---MYSEFPAITIGSTFVNTS--------YS 137 Query 103 LTIIPDGCGTVLHAFYCILKPRTVNRCPSGTGYVS-----YFIYETVHNDCQSTI-NRNA 156 + +++P T N G + Y + E H C + N+ Sbjct 138 V----------------VVQPHTTNLDNKLQGLLEISVCQYTMCEYPHTICHPKLGNKRV 181 Query 157 SLNSFKSFFDLVNCTFFN--SWDITADETKEWFGITQDTQGVHLYSSRKGDLYGGNMFRF 214 L + + +V+C + ++D+ AD +F Q+ + Y + G + F F Sbjct 182 ELWHWDT--GVVSCLYKRNFTYDVNADYL--YFHFYQEGGTFYAYFTDTGVV---TKFLF 234 Query 215 ATLPVYEG--IKYYTVIPRSFRSKANKREAWAAFYVYKLHQLTYLLDFSVDGYIRRAIDC 272 VY G + +Y V+P + S A E W V L YLL F+ DG I A+DC Sbjct 235 N---VYLGTVLSHYYVLPLTC-SSAMTLEYW----VTPLTSKQYLLAFNQDGVIFNAVDC 286 Query 273 GHDDLSQLHCSYTSFEVDTGVYSVSSYEASATGTFIEQ-PNATECDFSPMLTGVA-PQVY 330 D +S++ C S TGVY ++ Y + PN +C+ L + P Sbjct 287 KSDFMSEIKCKTLSIAPSTGVYELNGYTVQPIADVYRRIPNLPDCNIEAWLNDKSVPSPL 346 Query 331 NFKRLVFSNCNYNLTKLLSLFAVDEFSCNGISPDSIARGCYSTLTVDYFAYPLSMKSYIR 390 N++R FSNCN+N++ L+S D F+CN I I C+S++T+D FA P K ++ Sbjct 347 NWERKTFSNCNFNMSSLMSFIQADSFTCNNIDAAKIYGMCFSSITIDKFAIPNGRKVDLQ 406 Query 391 PGSAGNIPLYNYKQSFANPTCRVMASV-LANVTITK 425 G+ G + +NY+ +C++ ++ ANV++++ Sbjct 407 LGNLGYLQSFNYRIDTTATSCQLYYNLPAANVSVSR 442 Range 2: 628 to 758 Score:56.6 bits(135), Expect:6e-07, Method:Compositional matrix adjust., Identities:47/140(34%), Positives:68/140(48%), Gaps:12/140(8%) Query 533 LGKCVDYSLYGVTGRGVFQNCTAVGVKQ-QRFVYDSFDNLVGYYSDDGNY-YCVRPCVSV 590 LG CV+Y LYG+TG+G+F A Q +YDS NL G+ N + +R C S Sbjct 628 LGVCVNYDLYGITGQGIFVEVNATYYNSWQNLLYDSNGNLYGFRDYLTNRTFMIRSCYSG 687 Query 591 PVSVIYDKSTNLHATLFGSVACEHVTTMMSQFSRLTQSNLRRRDSNIPLQTAVGCVIGLS 650 VS + +++ A LF ++ C +V + SR Q + DS +GCV+ Sbjct 688 RVSAAFHANSSEPALLFRNIKCNYV--FNNTLSRQLQP-INYFDS------YLGCVVNAD 738 Query 651 NN-SLVVSDCKLPLGQSLCA 669 N+ S VV C L +G C Sbjct 739 NSTSSVVQTCDLTVGSGYCV 758 >RecName: Full=Spike glycoprotein; Short=S glycoprotein; AltName: Full=E2; AltName: Full=Peplomer protein; Contains: RecName: Full=Spike protein S1; Contains: RecName: Full=Spike protein S2; Contains: RecName: Full=Spike protein S2'; Flags: Precursor [Human coronavirus HKU1 (isolate N1)] Sequence ID: Q5MQD0.1 Length: 1356 Range 1: 191 to 436 Score:109 bits(272), Expect:3e-23, Method:Compositional matrix adjust., Identities:76/247(31%), Positives:117/247(47%), Gaps:11/247(4%) Query 187 FGITQDTQGVHLYSSRKGDLYG----GNMFRFATLPVYEG--IKYYTVIPRSFRS-KANK 239 + ++ D H Y R G Y M +Y G + +Y V+P + + +N Sbjct 191 YNVSTDWLYFHFYQER-GTFYAYYADSGMPTTFLFSLYLGTLLSHYYVLPLTCNAISSNT 249 Query 240 REAWAAFYVYKLHQLTYLLDFSVDGYIRRAIDCGHDDLSQLHCSYTSFEVDTGVYSVSSY 299 ++V L + YLL F G I A+DC S++ C S +TGVY +S + Sbjct 250 DNETLQYWVTPLSKRQYLLKFDNRGVITNAVDCSSSFFSEIQCKTKSLLPNTGVYDLSGF 309 Query 300 EASATGTFIEQ-PNATECDFSPMLTGV-APQVYNFKRLVFSNCNYNLTKLLSLFAVDEFS 357 T + P+ +CD L P N++R +FSNCN+NL+ LL L D FS Sbjct 310 TVKPVATVHRRIPDLPDCDIDKWLNNFNVPSPLNWERKIFSNCNFNLSTLLRLVHTDSFS 369 Query 358 CNGISPDSIARGCYSTLTVDYFAYPLSMKSYIRPGSAGNIPLYNYKQSFANPTCRVMASV 417 CN I C+ ++ +D FA P S +S ++ GS+G + NYK + +C++ S+ Sbjct 370 CNNFDESKIYGSCFKSIVLDKFAIPNSRRSDLQLGSSGFLQSSNYKIDTTSSSCQLYYSL 429 Query 418 LA-NVTI 423 A NVTI Sbjct 430 PAINVTI 436 Range 2: 621 to 745 Score:56.6 bits(135), Expect:6e-07, Method:Compositional matrix adjust., Identities:42/137(31%), Positives:66/137(48%), Gaps:15/137(10%) Query 536 CVDYSLYGVTGRGVFQNCTAVGVKQ-QRFVYDSFDNLVGYYSDDGNY-YCVRPCVSVPVS 593 CVDY LYG+TG+G+F+ +AV Q +YDS N++G+ N Y + PC + VS Sbjct 621 CVDYDLYGITGQGIFKEVSAVYYNSWQNLLYDSNGNIIGFKDFVTNKTYNIFPCYAGRVS 680 Query 594 VIYDKSTNLHATLFGSVACEHVTTMMSQFSRLTQSNLRRRDSNIPLQTAVGCVIGLSN-N 652 + ++ + A L+ ++ C +V ++ S TQ + +GCV N Sbjct 681 AAFHQNASSLALLYRNLKCSYV---LNNISLTTQP---------YFDSYLGCVFNADNLT 728 Query 653 SLVVSDCKLPLGQSLCA 669 VS C L +G C Sbjct 729 DYSVSSCALRMGSGFCV 745 >RecName: Full=Spike glycoprotein; Short=S glycoprotein; AltName: Full=E2; AltName: Full=Peplomer protein; Contains: RecName: Full=Spike protein S1; Contains: RecName: Full=Spike protein S2; Contains: RecName: Full=Spike protein S2'; Flags: Precursor [Bovine coronavirus Mebus] Sequence ID: P15777.1 Length: 1363 Range 1: 95 to 442 Score:108 bits(271), Expect:3e-23, Method:Compositional matrix adjust., Identities:106/396(27%), Positives:176/396(44%), Gaps:61/396(15%) Query 43 LVNDFDNGFVVRIGAAANSTGTIVISPSVNTKIKKAYPAFILGSSLTNTSAGQPLYANYS 102 ++DF NG ++ T VI V + +PA +GS+ NTS YS Sbjct 95 FLSDFINGIFAKV------KNTKVIKKGV---MYSEFPAITIGSTFVNTS--------YS 137 Query 103 LTIIPDGCGTVLHAFYCILKPRTVNRCPSGTGYVS-----YFIYETVHNDCQSTI-NRNA 156 + +++P T N G + Y + E H C + N+ Sbjct 138 V----------------VVQPHTTNLDNKLQGLLEISVCQYTMCEYPHTICHPNLGNKRV 181 Query 157 SLNSFKSFFDLVNCTFFN--SWDITADETKEWFGITQDTQGVHLYSSRKGDLYGGNMFRF 214 L + + +V+C + ++D+ AD +F Q+ + Y + G + F F Sbjct 182 ELWHWDT--GVVSCLYKRNFTYDVNADYL--YFHFYQEGGTFYAYFTDTGVV---TKFLF 234 Query 215 ATLPVYEG--IKYYTVIPRSFRSKANKREAWAAFYVYKLHQLTYLLDFSVDGYIRRAIDC 272 VY G + +Y V+P + S A E W V L YLL F+ DG I A+DC Sbjct 235 N---VYLGTVLSHYYVLPLTC-SSAMTLEYW----VTPLTSKQYLLAFNQDGVIFNAVDC 286 Query 273 GHDDLSQLHCSYTSFEVDTGVYSVSSYEASATGTFIEQ-PNATECDFSPMLTGVA-PQVY 330 D +S++ C S TGVY ++ Y + PN +C+ L + P Sbjct 287 KSDFMSEIKCKTLSIAPSTGVYELNGYTVQPIADVYRRIPNLPDCNIEAWLNDKSVPSPL 346 Query 331 NFKRLVFSNCNYNLTKLLSLFAVDEFSCNGISPDSIARGCYSTLTVDYFAYPLSMKSYIR 390 N++R FSNCN+N++ L+S D F+CN I I C+S++T+D FA P K ++ Sbjct 347 NWERKTFSNCNFNMSSLMSFIQADSFTCNNIDAAKIYGMCFSSITIDKFAIPNGRKVDLQ 406 Query 391 PGSAGNIPLYNYKQSFANPTCRVMASV-LANVTITK 425 G+ G + +NY+ +C++ ++ ANV++++ Sbjct 407 LGNLGYLQSFNYRIDTTATSCQLYYNLPAANVSVSR 442 Range 2: 628 to 758 Score:56.6 bits(135), Expect:6e-07, Method:Compositional matrix adjust., Identities:47/140(34%), Positives:68/140(48%), Gaps:12/140(8%) Query 533 LGKCVDYSLYGVTGRGVFQNCTAVGVKQ-QRFVYDSFDNLVGYYSDDGNY-YCVRPCVSV 590 LG CV+Y LYG+TG+G+F A Q +YDS NL G+ N + +R C S Sbjct 628 LGVCVNYDLYGITGQGIFVEVNATYYNSWQNLLYDSNGNLYGFRDYLTNRTFMIRSCYSG 687 Query 591 PVSVIYDKSTNLHATLFGSVACEHVTTMMSQFSRLTQSNLRRRDSNIPLQTAVGCVIGLS 650 VS + +++ A LF ++ C +V + SR Q + DS +GCV+ Sbjct 688 RVSAAFHANSSEPALLFRNIKCNYV--FNNTLSRQLQP-INYFDS------YLGCVVNAD 738 Query 651 NN-SLVVSDCKLPLGQSLCA 669 N+ S VV C L +G C Sbjct 739 NSTSSVVQTCDLTVGSGYCV 758 >RecName: Full=Spike glycoprotein; Short=S glycoprotein; AltName: Full=E2; AltName: Full=Peplomer protein; Contains: RecName: Full=Spike protein S1; Contains: RecName: Full=Spike protein S2; Contains: RecName: Full=Spike protein S2'; Flags: Precursor [Bovine coronavirus strain vaccine] Sequence ID: P25194.1 Length: 1363 Range 1: 95 to 442 Score:108 bits(271), Expect:4e-23, Method:Compositional matrix adjust., Identities:106/396(27%), Positives:176/396(44%), Gaps:61/396(15%) Query 43 LVNDFDNGFVVRIGAAANSTGTIVISPSVNTKIKKAYPAFILGSSLTNTSAGQPLYANYS 102 ++DF NG ++ T VI V + +PA +GS+ NTS YS Sbjct 95 FLSDFINGIFAKV------KNTKVIKKGV---MYSEFPAITIGSTFVNTS--------YS 137 Query 103 LTIIPDGCGTVLHAFYCILKPRTVNRCPSGTGYVS-----YFIYETVHNDCQSTI-NRNA 156 + +++P T N G + Y + E H C + N+ Sbjct 138 V----------------VVQPHTTNLDNKLQGLLEISVCQYTMCEYPHTICHPNLGNQRV 181 Query 157 SLNSFKSFFDLVNCTFFN--SWDITADETKEWFGITQDTQGVHLYSSRKGDLYGGNMFRF 214 L + + +V+C + ++D+ AD +F Q+ + Y + G + F F Sbjct 182 ELWHWDT--GVVSCLYKRNFTYDVNADYL--YFHFYQEGGTFYAYFTDTGVV---TKFLF 234 Query 215 ATLPVYEG--IKYYTVIPRSFRSKANKREAWAAFYVYKLHQLTYLLDFSVDGYIRRAIDC 272 VY G + +Y V+P + S A E W V L YLL F+ DG I A+DC Sbjct 235 N---VYLGTVLSHYYVLPLTCYS-AMTLEYW----VTPLTSKQYLLAFNQDGVIFNAVDC 286 Query 273 GHDDLSQLHCSYTSFEVDTGVYSVSSYEASATGTFIEQ-PNATECDFSPMLTGVA-PQVY 330 D +S++ C S TGVY ++ Y + PN +C+ L + P Sbjct 287 KSDFMSEIKCKTLSIAPSTGVYELNGYTVQPIADVYRRIPNLPDCNIEAWLNDKSVPSPL 346 Query 331 NFKRLVFSNCNYNLTKLLSLFAVDEFSCNGISPDSIARGCYSTLTVDYFAYPLSMKSYIR 390 N++R FSNCN+N++ L+S D F+CN I I C+S++T+D FA P K ++ Sbjct 347 NWERKTFSNCNFNMSSLMSFIQADSFTCNNIEAAKIYGMCFSSITIDKFAIPNGRKVDLQ 406 Query 391 PGSAGNIPLYNYKQSFANPTCRVMASV-LANVTITK 425 G+ G + +NY+ +C++ ++ ANV++++ Sbjct 407 LGNLGYLQSFNYRIDTTAASCQLYYNLPAANVSVSR 442 Range 2: 628 to 757 Score:57.0 bits(136), Expect:5e-07, Method:Compositional matrix adjust., Identities:47/139(34%), Positives:68/139(48%), Gaps:12/139(8%) Query 533 LGKCVDYSLYGVTGRGVFQNCTAVGVKQ-QRFVYDSFDNLVGYYSDDGNY-YCVRPCVSV 590 LG CV+Y LYG+TG+G+F A Q +YDS NL G+ N + +R C S Sbjct 628 LGVCVNYDLYGITGQGIFVEVNATYYNSWQNLLYDSNGNLYGFRDYLTNRTFMIRSCYSG 687 Query 591 PVSVIYDKSTNLHATLFGSVACEHVTTMMSQFSRLTQSNLRRRDSNIPLQTAVGCVIGLS 650 VS + +++ A LF ++ C +V + SR Q + DS +GCV+ Sbjct 688 RVSAAFHANSSEPALLFRNIKCNYV--FNNTLSRQLQP-INYFDS------YLGCVVNAD 738 Query 651 NN-SLVVSDCKLPLGQSLC 668 N+ S VV C L +G C Sbjct 739 NSTSSVVQTCDLTVGSGYC 757 >RecName: Full=Spike glycoprotein; Short=S glycoprotein; AltName: Full=E2; AltName: Full=Peplomer protein; Contains: RecName: Full=Spike protein S1; Contains: RecName: Full=Spike protein S2; Contains: RecName: Full=Spike protein S2'; Flags: Precursor [Bovine respiratory coronavirus (strain 98TXSF-110-LUN)] Sequence ID: Q8V436.1 Length: 1363 Range 1: 95 to 442 Score:108 bits(270), Expect:4e-23, Method:Compositional matrix adjust., Identities:107/393(27%), Positives:174/393(44%), Gaps:55/393(13%) Query 43 LVNDFDNGFVVRIGAAANSTGTIVISPSVNTKIKKAYPAFILGSSLTNTSAGQPLYANYS 102 ++DF NG ++ T VI V + +PA +GS+ NTS YS Sbjct 95 FLSDFTNGIFAKV------KNTKVIKDGV---MYSEFPAITIGSTFVNTS--------YS 137 Query 103 LTIIPDG--CGTVLHAFYCILKPRTVNRCPSGTGYVSYFIYETVHNDCQSTI-NRNASLN 159 + + P G L F I Y + E + C + NR L Sbjct 138 VVVQPHTTILGNKLQGFLEI-------------SVCQYTMCEYPNTICNPNLGNRRVELW 184 Query 160 SFKSFFDLVNCTFFN--SWDITADETKEWFGITQDTQGVHLYSSRKGDLYGGNMFRFATL 217 + + +V+C + ++D+ AD +F Q+ + Y + G + F F Sbjct 185 HWDT--GVVSCLYKRNFTYDVNADYL--YFHFYQEGGTFYAYFTDTGVV---TKFLFN-- 235 Query 218 PVYEG--IKYYTVIPRSFRSKANKREAWAAFYVYKLHQLTYLLDFSVDGYIRRAIDCGHD 275 VY G + +Y V+P + S A E W V L YLL F+ DG I A+DC D Sbjct 236 -VYLGTVLSHYYVMPLTCNS-ALTLEYW----VTPLTSKQYLLAFNQDGVIFNAVDCKSD 289 Query 276 DLSQLHCSYTSFEVDTGVYSVSSYEASATGTFIEQ-PNATECDFSPMLTGVA-PQVYNFK 333 +S++ C S TGVY ++ Y + PN +C+ L + P N++ Sbjct 290 FMSEIKCKTLSIAPSTGVYELNGYTVQPIADVYRRIPNLPDCNIEAWLNDKSVPSPLNWE 349 Query 334 RLVFSNCNYNLTKLLSLFAVDEFSCNGISPDSIARGCYSTLTVDYFAYPLSMKSYIRPGS 393 R FSNCN+N++ L+S D F+CN I I C+S++T+D FA P K ++ G+ Sbjct 350 RKTFSNCNFNMSSLMSFIQADSFTCNNIDAAKIYGMCFSSITIDKFAIPNGRKVDLQLGN 409 Query 394 AGNIPLYNYKQSFANPTCRVMASV-LANVTITK 425 G + +NY+ +C++ ++ ANV++++ Sbjct 410 LGYLQSFNYRIDTTATSCQLYYNLPAANVSVSR 442 Range 2: 628 to 757 Score:57.0 bits(136), Expect:5e-07, Method:Compositional matrix adjust., Identities:47/139(34%), Positives:68/139(48%), Gaps:12/139(8%) Query 533 LGKCVDYSLYGVTGRGVFQNCTAVGVKQ-QRFVYDSFDNLVGYYSDDGNY-YCVRPCVSV 590 LG CV+Y LYG+TG+G+F A Q +YDS NL G+ N + +R C S Sbjct 628 LGVCVNYDLYGITGQGIFVEVNATYYNSWQNLLYDSNGNLYGFRDYLTNRTFMIRSCYSG 687 Query 591 PVSVIYDKSTNLHATLFGSVACEHVTTMMSQFSRLTQSNLRRRDSNIPLQTAVGCVIGLS 650 VS + +++ A LF ++ C +V + SR Q + DS +GCV+ Sbjct 688 RVSAAFHANSSEPALLFRNIKCNYV--FNNTLSRQLQP-INYFDS------YLGCVVNAD 738 Query 651 NN-SLVVSDCKLPLGQSLC 668 N+ S VV C L +G C Sbjct 739 NSTSSVVQTCDLTVGSGYC 757 >RecName: Full=Spike glycoprotein; Short=S glycoprotein; AltName: Full=E2; AltName: Full=Peplomer protein; Contains: RecName: Full=Spike protein S1; Contains: RecName: Full=Spike protein S2; Contains: RecName: Full=Spike protein S2'; Flags: Precursor [Bovine coronavirus strain L9] Sequence ID: P25191.1 Length: 1363 Range 1: 95 to 442 Score:108 bits(270), Expect:5e-23, Method:Compositional matrix adjust., Identities:106/396(27%), Positives:176/396(44%), Gaps:61/396(15%) Query 43 LVNDFDNGFVVRIGAAANSTGTIVISPSVNTKIKKAYPAFILGSSLTNTSAGQPLYANYS 102 ++DF NG ++ T VI V + +PA +GS+ NTS YS Sbjct 95 FLSDFINGIFAKV------KNTKVIKKGV---MYSEFPAITIGSTFVNTS--------YS 137 Query 103 LTIIPDGCGTVLHAFYCILKPRTVNRCPSGTGYVS-----YFIYETVHNDCQSTI-NRNA 156 + +++P T N G + Y + E H C + N+ Sbjct 138 V----------------VVQPHTTNLDNKLQGLLEISVCQYTMCEYPHTICHPNLGNKRV 181 Query 157 SLNSFKSFFDLVNCTFFN--SWDITADETKEWFGITQDTQGVHLYSSRKGDLYGGNMFRF 214 L + + +V+C + ++D+ AD +F Q+ + Y + G + F F Sbjct 182 ELWHWDT--GVVSCLYKRNFTYDVNADYL--YFHFYQEGGTFYAYFTDTGVV---TKFLF 234 Query 215 ATLPVYEG--IKYYTVIPRSFRSKANKREAWAAFYVYKLHQLTYLLDFSVDGYIRRAIDC 272 VY G + +Y V+P + S A E W V L YLL F+ DG I A+DC Sbjct 235 N---VYLGTVLSHYYVLPLTCNS-AMTLEYW----VTPLTSKQYLLAFNQDGVIFNAVDC 286 Query 273 GHDDLSQLHCSYTSFEVDTGVYSVSSYEASATGTFIEQ-PNATECDFSPMLTGVA-PQVY 330 D +S++ C S TGVY ++ Y + PN +C+ L + P Sbjct 287 KSDFMSEIKCKTLSIAPSTGVYELNGYTVQPIADVYRRIPNLPDCNIEAWLNDKSVPSPL 346 Query 331 NFKRLVFSNCNYNLTKLLSLFAVDEFSCNGISPDSIARGCYSTLTVDYFAYPLSMKSYIR 390 N++R FSNCN+N++ L+S D F+CN I I C+S++T+D FA P K ++ Sbjct 347 NWERKTFSNCNFNMSCLMSFIQADSFTCNNIDAAKIYGMCFSSITIDKFAIPNGRKVDLQ 406 Query 391 PGSAGNIPLYNYKQSFANPTCRVMASV-LANVTITK 425 G+ G + +NY+ +C++ ++ ANV++++ Sbjct 407 LGNLGYLQSFNYRIDTTATSCQLYYNLPAANVSVSR 442 Range 2: 628 to 757 Score:55.8 bits(133), Expect:1e-06, Method:Compositional matrix adjust., Identities:47/139(34%), Positives:68/139(48%), Gaps:12/139(8%) Query 533 LGKCVDYSLYGVTGRGVFQNCTAVGVKQ-QRFVYDSFDNLVGYYSDDGNY-YCVRPCVSV 590 LG CV+Y LYG+TG+G+F A Q +YDS NL G+ N + +R C S Sbjct 628 LGVCVNYDLYGITGQGIFVEVNAPYYNSWQNLLYDSNGNLYGFRDYLTNRTFMIRSCYSG 687 Query 591 PVSVIYDKSTNLHATLFGSVACEHVTTMMSQFSRLTQSNLRRRDSNIPLQTAVGCVIGLS 650 VS + +++ A LF ++ C +V + SR Q + DS +GCV+ Sbjct 688 RVSAAFHANSSEPALLFRNIKCNYV--FNNTLSRQLQP-INYFDS------YLGCVVNAD 738 Query 651 NN-SLVVSDCKLPLGQSLC 668 N+ S VV C L +G C Sbjct 739 NSTSSVVQTCDLTVGSGYC 757 >RecName: Full=Spike glycoprotein; Short=S glycoprotein; AltName: Full=E2; AltName: Full=Peplomer protein; Contains: RecName: Full=Spike protein S1; Contains: RecName: Full=Spike protein S2; Contains: RecName: Full=Spike protein S2'; Flags: Precursor [Bat SARS CoV Rp3/2004] Sequence ID: Q3I5J5.1 Length: 1241 Range 1: 226 to 644 Score:107 bits(268), Expect:9e-23, Method:Compositional matrix adjust., Identities:118/460(26%), Positives:187/460(40%), Gaps:48/460(10%) Query 217 LPVYEGIKYYTVIPRSF-RSKANKREAWAAFYVYKLHQLTYLLDFSVDGYIRRAIDCGHD 275 LP I Y V+ F ++ +N AA+YV L T++L F+ +G I AIDC + Sbjct 226 LPFGINITSYRVVMAMFSQTTSNFLPESAAYYVGNLKYTTFMLSFNENGTITNAIDCAQN 285 Query 276 DLSQLHCSYTSFEVDTGVYSVSSYEASATGTFIEQPNAT-ECDFSPMLTGVA-PQVYNFK 333 L++L C+ +F V G+Y S++ S T I PN T C F + P VY ++ Sbjct 286 PLAELKCTIKNFNVSKGIYQTSNFRVSPTQEVIRFPNITNRCPFDKVFNATRFPNVYAWE 345 Query 334 RLVFSNCNYNLTKLLSLFAVDEFSCNGISPDSIARGCYSTLTVDYFAYPLSMKSYIRPGS 393 R S+C + T L + + F C G+SP + C++++ D F S + PG Sbjct 346 RTKISDCVADYTVLYNSTSFSTFKCYGVSPSKLIDLCFTSVYADTFLIRSSEVRQVAPGE 405 Query 394 AGNIPLYNYKQSFANPTCRVMASVLANVTITKPHAYGYISKCSRLTGANQDVETPLYINP 453 G I YNYK C + + K Y + R T + P Sbjct 406 TGVIADYNYKLPDDFTGCVIAWNT------AKQDQGQYYYRSHRKTK----------LKP 449 Query 454 GEYSICRDFSPGGFSEDGQVFKRTLTQFEGGGLLIGVGTRVPMTDNLQMSFIISVQYGTG 513 E RD S E+G RTL+ ++ VP+ ++S + Sbjct 450 FE----RDLSS---DENG---VRTLSTYD-------FYPSVPVAYQATRVVVLSFELLNA 492 Query 514 TDSVCPMLDLGDSLTITNRLGKCVDYSLYGVTGRGVFQNCTAVGVKQQRFVYDSFDNLVG 573 +VC G L+ +CV+++ G+ G GV + Q+F D+ D Sbjct 493 PATVC-----GPKLSTQLVKNQCVNFNFNGLKGTGVLTESSKRFQSFQQFGRDTSD-FTD 546 Query 574 YYSDDGNYYC--VRPCVSVPVSVIY--DKSTNLHATLFGSVACEHVTTMMSQFSRLTQSN 629 D + PC VSVI +++ A L+ V C V + Sbjct 547 SVRDPQTLEILDISPCSFGGVSVITPGTNASSEVAVLYQDVNCTDVPAAIHADQLTPAWR 606 Query 630 LRRRDSNIPLQTAVGCVIGLSNNSLVVSDCKLPLGQSLCA 669 + +N+ QT GC+IG + + +C +P+G +CA Sbjct 607 VYSTGTNV-FQTQAGCLIGAEHVN-ASYECDIPIGAGICA 644 >RecName: Full=Spike glycoprotein; Short=S glycoprotein; AltName: Full=E2; AltName: Full=Peplomer protein; Contains: RecName: Full=Spike protein S1; Contains: RecName: Full=Spike protein S2; Contains: RecName: Full=Spike protein S2'; Flags: Precursor [Bovine coronavirus (strain OK-0514-3)] Sequence ID: Q9QAQ8.1 Length: 1363 Range 1: 236 to 442 Score:106 bits(265), Expect:2e-22, Method:Compositional matrix adjust., Identities:68/212(32%), Positives:109/212(51%), Gaps:10/212(4%) Query 219 VYEG--IKYYTVIPRSFRSKANKREAWAAFYVYKLHQLTYLLDFSVDGYIRRAIDCGHDD 276 VY G + +Y V+P + S A E W V L YLL F+ DG I A+DC D Sbjct 236 VYLGTVLSHYYVMPLTCNS-AMTLEYW----VTPLTSKQYLLAFNQDGVIFNAVDCKSDF 290 Query 277 LSQLHCSYTSFEVDTGVYSVSSYEASATGTFIEQ-PNATECDFSPMLTGVA-PQVYNFKR 334 +S++ C S TGVY ++ Y + PN +C+ L + P N++R Sbjct 291 MSEIKCKTLSIAPSTGVYELNGYTVQPIADVYRRIPNLPDCNIEAWLNDKSVPSPLNWER 350 Query 335 LVFSNCNYNLTKLLSLFAVDEFSCNGISPDSIARGCYSTLTVDYFAYPLSMKSYIRPGSA 394 FSNCN+N++ L+S D F+CN I I C+S++T+D FA P K ++ G+ Sbjct 351 KTFSNCNFNMSSLMSFIQADSFTCNNIDAAKIYGMCFSSITIDKFAIPNGRKVDLQLGNL 410 Query 395 GNIPLYNYKQSFANPTCRVMASV-LANVTITK 425 G + +NY+ +C++ ++ ANV++++ Sbjct 411 GYLQSFNYRIDTTATSCQLYYNLPAANVSVSR 442 Range 2: 628 to 757 Score:57.0 bits(136), Expect:5e-07, Method:Compositional matrix adjust., Identities:47/139(34%), Positives:68/139(48%), Gaps:12/139(8%) Query 533 LGKCVDYSLYGVTGRGVFQNCTAVGVKQ-QRFVYDSFDNLVGYYSDDGNY-YCVRPCVSV 590 LG CV+Y LYG+TG+G+F A Q +YDS NL G+ N + +R C S Sbjct 628 LGVCVNYDLYGITGQGIFVEVNATYYNSWQNLLYDSNGNLYGFRDYLTNRTFMIRSCYSG 687 Query 591 PVSVIYDKSTNLHATLFGSVACEHVTTMMSQFSRLTQSNLRRRDSNIPLQTAVGCVIGLS 650 VS + +++ A LF ++ C +V + SR Q + DS +GCV+ Sbjct 688 RVSAAFHANSSEPALLFRNIKCNYV--FNNTLSRQLQP-INYFDS------YLGCVVNAD 738 Query 651 NN-SLVVSDCKLPLGQSLC 668 N+ S VV C L +G C Sbjct 739 NSTSSVVQTCDLTVGSGYC 757 >RecName: Full=Spike glycoprotein; Short=S glycoprotein; AltName: Full=E2; AltName: Full=Peplomer protein; Contains: RecName: Full=Spike protein S1; Contains: RecName: Full=Spike protein S2; Contains: RecName: Full=Spike protein S2'; Flags: Precursor [Bovine coronavirus strain F15] Sequence ID: P25190.1 Length: 1363 Range 1: 95 to 442 Score:106 bits(265), Expect:2e-22, Method:Compositional matrix adjust., Identities:106/396(27%), Positives:176/396(44%), Gaps:61/396(15%) Query 43 LVNDFDNGFVVRIGAAANSTGTIVISPSVNTKIKKAYPAFILGSSLTNTSAGQPLYANYS 102 ++DF NG ++ T VI V + +PA +GS+ NTS YS Sbjct 95 FLSDFINGIFAKV------KNTKVIKHGV---MYSEFPAITIGSTFVNTS--------YS 137 Query 103 LTIIPDGCGTVLHAFYCILKPRTVNRCPSGTGYVS-----YFIYETVHNDCQSTI-NRNA 156 + +++P T N G + Y + E + C + NR Sbjct 138 V----------------VVQPHTTNLDNKLQGLLEISVCQYTMCEYPNTICHPNLGNRRV 181 Query 157 SLNSFKSFFDLVNCTFFN--SWDITADETKEWFGITQDTQGVHLYSSRKGDLYGGNMFRF 214 L + + +V+C + ++D+ AD +F Q+ + Y + G + F F Sbjct 182 ELWHWDT--GVVSCLYKRNFTYDVNADYL--YFHFYQEGGTFYAYFTDTGVV---TKFLF 234 Query 215 ATLPVYEG--IKYYTVIPRSFRSKANKREAWAAFYVYKLHQLTYLLDFSVDGYIRRAIDC 272 VY G + +Y V+P + S A E W V L YLL F+ DG I A+DC Sbjct 235 N---VYLGTVLSHYYVMPLTCNS-AMTLEYW----VTPLTSKQYLLAFNQDGVIFNAVDC 286 Query 273 GHDDLSQLHCSYTSFEVDTGVYSVSSYEASATGTFIEQ-PNATECDFSPMLTGVA-PQVY 330 D +S++ C S TGVY ++ Y + PN +C+ L + P Sbjct 287 KSDFMSEIKCKTLSIAPSTGVYELNGYTVQPIADVYRRIPNLPDCNIEAWLNDKSVPSPL 346 Query 331 NFKRLVFSNCNYNLTKLLSLFAVDEFSCNGISPDSIARGCYSTLTVDYFAYPLSMKSYIR 390 N++R FSNCN+N++ L+S D F+CN I I C+S++T+D FA P K ++ Sbjct 347 NWERKTFSNCNFNMSSLMSFIQADSFTCNNIDAAKIYGMCFSSITIDKFAIPNGRKVDLQ 406 Query 391 PGSAGNIPLYNYKQSFANPTCRVMASV-LANVTITK 425 G+ G + +NY+ +C++ ++ ANV++++ Sbjct 407 LGNLGYLQSFNYRIDTTATSCQLYYNLPAANVSLSR 442 Range 2: 628 to 757 Score:54.7 bits(130), Expect:2e-06, Method:Compositional matrix adjust., Identities:45/139(32%), Positives:67/139(48%), Gaps:12/139(8%) Query 533 LGKCVDYSLYGVTGRGVFQNCTAVGVKQ-QRFVYDSFDNLVGYYSDDGNY-YCVRPCVSV 590 LG CV+Y LYG+TG+G+F A Q +YDS NL G+ N + +R C S Sbjct 628 LGVCVNYDLYGITGQGIFVEANATYYNSWQNLLYDSNGNLYGFRDYLTNRTFMIRSCYSG 687 Query 591 PVSVIYDKSTNLHATLFGSVACEHVTTMMSQFSRLTQSNLRRRDSNIPLQTAVGCVIGLS 650 VS + +++ A LF ++ C +V + SR Q + DS +GCV+ Sbjct 688 RVSAAFHANSSEPALLFRNIKCNYV--FNNTLSRQLQP-INYFDS------YLGCVVNAD 738 Query 651 NNSL-VVSDCKLPLGQSLC 668 N++ V C L +G C Sbjct 739 NSTASAVQTCDLTVGSGYC 757 >RecName: Full=Spike glycoprotein; Short=S glycoprotein; AltName: Full=E2; AltName: Full=Peplomer protein; Contains: RecName: Full=Spike protein S1; Contains: RecName: Full=Spike protein S2; Contains: RecName: Full=Spike protein S2'; Flags: Precursor [Bovine coronavirus (strain LSU-94LSS-051)] Sequence ID: Q9QAR5.1 Length: 1363 Range 1: 236 to 442 Score:106 bits(264), Expect:3e-22, Method:Compositional matrix adjust., Identities:68/212(32%), Positives:109/212(51%), Gaps:10/212(4%) Query 219 VYEG--IKYYTVIPRSFRSKANKREAWAAFYVYKLHQLTYLLDFSVDGYIRRAIDCGHDD 276 VY G + +Y V+P + S A E W V L YLL F+ DG I A+DC D Sbjct 236 VYLGTVLSHYYVMPLTCNS-ALTLEYW----VTPLTSKQYLLAFNQDGVIFNAVDCKSDF 290 Query 277 LSQLHCSYTSFEVDTGVYSVSSYEASATGTFIEQ-PNATECDFSPMLTGVA-PQVYNFKR 334 +S++ C S TGVY ++ Y + PN +C+ L + P N++R Sbjct 291 MSEIKCKTLSIAPSTGVYELNGYTVQPIADVYRRIPNLPDCNIEAWLNDKSVPSPLNWER 350 Query 335 LVFSNCNYNLTKLLSLFAVDEFSCNGISPDSIARGCYSTLTVDYFAYPLSMKSYIRPGSA 394 FSNCN+N++ L+S D F+CN I I C+S++T+D FA P K ++ G+ Sbjct 351 KTFSNCNFNMSSLMSFIQADSFTCNNIDAAKIYGMCFSSITIDKFAIPNGRKVDLQLGNL 410 Query 395 GNIPLYNYKQSFANPTCRVMASV-LANVTITK 425 G + +NY+ +C++ ++ ANV++++ Sbjct 411 GYLQSFNYRIDTTATSCQLYYNLPAANVSVSR 442 Range 2: 628 to 757 Score:55.5 bits(132), Expect:2e-06, Method:Compositional matrix adjust., Identities:47/139(34%), Positives:67/139(48%), Gaps:12/139(8%) Query 533 LGKCVDYSLYGVTGRGVFQNCTAVGVKQ-QRFVYDSFDNLVGYYSDDGNY-YCVRPCVSV 590 LG CV+Y LYG+TG+G+F A Q +YDS NL G+ N + +R C S Sbjct 628 LGVCVNYDLYGITGQGIFVEVNATYYNSWQNLLYDSNGNLYGFRDYLTNRTFMIRSCYSG 687 Query 591 PVSVIYDKSTNLHATLFGSVACEHVTTMMSQFSRLTQSNLRRRDSNIPLQTAVGCVIGLS 650 VS + +++ A LF + C +V + SR Q + DS +GCV+ Sbjct 688 RVSAAFHANSSEPALLFRNFKCNYV--FNNTLSRQLQP-INYFDS------YLGCVVNAD 738 Query 651 NN-SLVVSDCKLPLGQSLC 668 N+ S VV C L +G C Sbjct 739 NSTSSVVQTCDLTVGSGYC 757 >RecName: Full=Spike glycoprotein; Short=S glycoprotein; AltName: Full=E2; AltName: Full=Peplomer protein; Contains: RecName: Full=Spike protein S1; Contains: RecName: Full=Spike protein S2; Contains: RecName: Full=Spike protein S2'; Flags: Precursor [Severe acute respiratory syndrome-related coronavirus] Sequence ID: P59594.1 Length: 1255 Range 1: 222 to 658 Score:105 bits(263), Expect:4e-22, Method:Compositional matrix adjust., Identities:121/467(26%), Positives:189/467(40%), Gaps:44/467(9%) Query 217 LPVYEGIKYYTVIPRSFRSKANKREAW----AAFYVYKLHQLTYLLDFSVDGYIRRAIDC 272 LP+ I + I +F + ++ W AA++V L T++L + +G I A+DC Sbjct 222 LPLGINITNFRAILTAF---SPAQDIWGTSAAAYFVGYLKPTTFMLKYDENGTITDAVDC 278 Query 273 GHDDLSQLHCSYTSFEVDTGVYSVSSYEASATGTFIEQPNATE-CDFSPMLTGVA-PQVY 330 + L++L CS SFE+D G+Y S++ +G + PN T C F + P VY Sbjct 279 SQNPLAELKCSVKSFEIDKGIYQTSNFRVVPSGDVVRFPNITNLCPFGEVFNATKFPSVY 338 Query 331 NFKRLVFSNCNYNLTKLLSLFAVDEFSCNGISPDSIARGCYSTLTVDYFAYPLSMKSYIR 390 ++R SNC + + L + F C G+S + C+S + D F I Sbjct 339 AWERKKISNCVADYSVLYNSTFFSTFKCYGVSATKLNDLCFSNVYADSFVVKGDDVRQIA 398 Query 391 PGSAGNIPLYNYKQSFANPTCRVMASVLANVTITKPHAYGYISKCSRLTGANQDVETPLY 450 PG G I YNYK C V+A N+ T Y Y + R Sbjct 399 PGQTGVIADYNYKLPDDFMGC-VLAWNTRNIDATSTGNYNYKYRYLRHGK---------- 447 Query 451 INPGEYSICRDFSPGGFSEDGQVFKRTLTQFEGGGLLIGVGTRVPMTDNLQMSFIISVQY 510 + P E RD S FS DG+ G T + ++S + Sbjct 448 LRPFE----RDISNVPFSPDGKPCTPPALNCYWPLNDYGFYTTTGIGYQPYRVVVLSFEL 503 Query 511 GTGTDSVCPMLDLGDSLTITNRLGKCVDYSLYGVTGRGVFQNCTAVGVKQQRFVYDSFDN 570 +VC G L+ +CV+++ G+TG GV + Q+F D D Sbjct 504 LNAPATVC-----GPKLSTDLIKNQCVNFNFNGLTGTGVLTPSSKRFQPFQQFGRDVSD- 557 Query 571 LVGYYSDD------GNYYCVRPCVSVPVSVIY--DKSTNLHATLFGSVACEHVTTMMSQF 622 ++D + PC VSVI +++ A L+ V C V+T + Sbjct 558 ----FTDSVRDPKTSEILDISPCSFGGVSVITPGTNASSEVAVLYQDVNCTDVSTAIHA- 612 Query 623 SRLTQSNLRRRDSNIPLQTAVGCVIGLSNNSLVVSDCKLPLGQSLCA 669 +LT + N QT GC+IG + + +C +P+G +CA Sbjct 613 DQLTPAWRIYSTGNNVFQTQAGCLIG-AEHVDTSYECDIPIGAGICA 658 >RecName: Full=Spike glycoprotein; Short=S glycoprotein; AltName: Full=E2; AltName: Full=Peplomer protein; Contains: RecName: Full=Spike protein S1; Contains: RecName: Full=Spike protein S2; Contains: RecName: Full=Spike protein S2'; Flags: Precursor [Bovine enteric coronavirus (strain 98TXSF-110-ENT)] Sequence ID: Q91A26.1 Length: 1363 Range 1: 95 to 442 Score:103 bits(256), Expect:2e-21, Method:Compositional matrix adjust., Identities:105/393(27%), Positives:173/393(44%), Gaps:55/393(13%) Query 43 LVNDFDNGFVVRIGAAANSTGTIVISPSVNTKIKKAYPAFILGSSLTNTSAGQPLYANYS 102 ++DF NG ++ T VI V + +PA +GS+ NTS YS Sbjct 95 FLSDFTNGIFAKV------KNTKVIKDGV---MYSEFPAITIGSTFVNTS--------YS 137 Query 103 LTIIPDG--CGTVLHAFYCILKPRTVNRCPSGTGYVSYFIYETVHNDCQSTI-NRNASLN 159 + + P G L F I Y + E + C + N+ L Sbjct 138 VVVQPHTTILGNKLQGFLEI-------------SVCQYTMCEYPNTICNPNLGNQRVELW 184 Query 160 SFKSFFDLVNCTFFN--SWDITADETKEWFGITQDTQGVHLYSSRKGDLYGGNMFRFATL 217 + + +V+C + ++D+ AD +F Q+ + Y + G + F F Sbjct 185 HWDT--GVVSCLYKRNFTYDVNADYL--YFHFYQEGGTFYAYFTDTGVV---TKFLFN-- 235 Query 218 PVYEG--IKYYTVIPRSFRSKANKREAWAAFYVYKLHQLTYLLDFSVDGYIRRAIDCGHD 275 VY G + +Y V+P + S A E W V L YLL F+ DG I A+DC D Sbjct 236 -VYLGTVLSHYYVMPLTCNS-ALTLEYW----VTPLTSKQYLLAFNQDGVIFNAVDCKSD 289 Query 276 DLSQLHCSYTSFEVDTGVYSVSSYEASATGTFIEQ-PNATECDFSPMLTGVA-PQVYNFK 333 +S++ C S TGVY ++ Y + PN +C+ L + P N++ Sbjct 290 FMSEIKCKTLSIAPSTGVYELNGYTVQPIADVYRRIPNLPDCNIEAWLNDKSVPSPLNWE 349 Query 334 RLVFSNCNYNLTKLLSLFAVDEFSCNGISPDSIARGCYSTLTVDYFAYPLSMKSYIRPGS 393 R FSNCN+N++ L+S F+CN I I C+S++T+D FA P K ++ G+ Sbjct 350 RKTFSNCNFNMSSLMSFIQAYSFTCNNIDAAKIYGMCFSSITIDKFAIPNGRKVDLQLGN 409 Query 394 AGNIPLYNYKQSFANPTCRVMASV-LANVTITK 425 G + +NY+ +C++ ++ ANV++++ Sbjct 410 LGYLQSFNYRIDTTATSCQLYYNLPAANVSVSR 442 Range 2: 628 to 757 Score:57.0 bits(136), Expect:5e-07, Method:Compositional matrix adjust., Identities:47/139(34%), Positives:68/139(48%), Gaps:12/139(8%) Query 533 LGKCVDYSLYGVTGRGVFQNCTAVGVKQ-QRFVYDSFDNLVGYYSDDGNY-YCVRPCVSV 590 LG CV+Y LYG+TG+G+F A Q +YDS NL G+ N + +R C S Sbjct 628 LGVCVNYDLYGITGQGIFVEVNATYYNSWQNLLYDSNGNLYGFRDYLTNRTFMIRSCYSG 687 Query 591 PVSVIYDKSTNLHATLFGSVACEHVTTMMSQFSRLTQSNLRRRDSNIPLQTAVGCVIGLS 650 VS + +++ A LF ++ C +V + SR Q + DS +GCV+ Sbjct 688 RVSAAFHANSSEPALLFRNIKCNYV--FNNTLSRQLQP-INYFDS------YLGCVVNAD 738 Query 651 NN-SLVVSDCKLPLGQSLC 668 N+ S VV C L +G C Sbjct 739 NSTSSVVQTCDLTVGSGYC 757 >RecName: Full=Spike glycoprotein; Short=S glycoprotein; AltName: Full=E2; AltName: Full=Peplomer protein; Contains: RecName: Full=Spike protein S1; Contains: RecName: Full=Spike protein S2; Contains: RecName: Full=Spike protein S2'; Flags: Precursor [Murine hepatitis virus strain 4] Sequence ID: P22432.1 Length: 1376 Range 1: 258 to 438 Score:100 bits(249), Expect:2e-20, Method:Compositional matrix adjust., Identities:59/181(33%), Positives:92/181(50%), Gaps:3/181(1%) Query 246 FYVYKLHQLTYLLDFSVDGYIRRAIDCGHDDLSQLHCSYTSFEVDTGVYSVSSYEASATG 305 ++V L + YL +F+ G I A+DC +S++ C S TGVY +S Y G Sbjct 258 YWVTPLLKRQYLFNFNEKGVITSAVDCASSYISEIKCKTQSLLPSTGVYDLSGYTVQPVG 317 Query 306 TFIEQ-PNATECDFSPMLTGVA-PQVYNFKRLVFSNCNYNLTKLLSLFAVDEFSCNGISP 363 + PN +C LT + P N++R F NCN+NL+ LL + SCN I Sbjct 318 VVYRRVPNLPDCKIEEWLTAKSVPSPLNWERRTFQNCNFNLSSLLRYVQAESLSCNNIDA 377 Query 364 DSIARGCYSTLTVDYFAYPLSMKSYIRPGSAGNIPLYNYKQSFANPTCRVMASVLA-NVT 422 + C+ +++VD FA P S + ++ G++G + NYK A +C++ S+ NVT Sbjct 378 SKVYGMCFGSVSVDKFAIPRSRQIDLQIGNSGFLQTANYKIDTAATSCQLYYSLPKNNVT 437 Query 423 I 423 I Sbjct 438 I 438 Range 2: 630 to 758 Score:57.0 bits(136), Expect:4e-07, Method:Compositional matrix adjust., Identities:44/139(32%), Positives:66/139(47%), Gaps:14/139(10%) Query 534 GKCVDYSLYGVTGRGVFQNCTAVGVKQ-QRFVYDSFDNLVGYYSDDGNY-YCVRPCVSVP 591 G CV Y LYG+TG+GVF+ A Q +YD NL G+ N Y +R C S Sbjct 630 GVCVRYDLYGITGQGVFKEVKADYYNSWQALLYDVNGNLNGFRDLTTNKTYTIRSCYSGR 689 Query 592 VSVIYDKSTNLHATLFGSVACEHVTTMMSQFSRLTQSNLRRRDSNIP-LQTAVGCVIGLS 650 VS Y K A L+ ++ C +V T +N+ R ++ + + +GCV+ Sbjct 690 VSAAYHKEAPEPALLYRNINCSYVFT----------NNISREENPLNYFDSYLGCVVNAD 739 Query 651 NNS-LVVSDCKLPLGQSLC 668 N + + +C L +G LC Sbjct 740 NRTDEALPNCDLRMGAGLC 758 >RecName: Full=Spike glycoprotein; Short=S glycoprotein; AltName: Full=E2; AltName: Full=Peplomer protein; Contains: RecName: Full=Spike protein S1; Contains: RecName: Full=Spike protein S2; Contains: RecName: Full=Spike protein S2'; Flags: Precursor [Murine hepatitis virus strain JHMV / variant CL-2] Sequence ID: Q02385.1 Length: 1376 Range 1: 258 to 438 Score:100 bits(249), Expect:2e-20, Method:Compositional matrix adjust., Identities:59/181(33%), Positives:92/181(50%), Gaps:3/181(1%) Query 246 FYVYKLHQLTYLLDFSVDGYIRRAIDCGHDDLSQLHCSYTSFEVDTGVYSVSSYEASATG 305 ++V L + YL +F+ G I A+DC +S++ C S TGVY +S Y G Sbjct 258 YWVTPLLKRQYLFNFNEKGVITSAVDCASSYISEIKCKTQSLLPSTGVYDLSGYTVQPVG 317 Query 306 TFIEQ-PNATECDFSPMLTGVA-PQVYNFKRLVFSNCNYNLTKLLSLFAVDEFSCNGISP 363 + PN +C LT + P N++R F NCN+NL+ LL + SCN I Sbjct 318 VVYRRVPNLPDCKIEEWLTAKSVPSPLNWERRTFQNCNFNLSSLLRYVQAESLSCNNIDA 377 Query 364 DSIARGCYSTLTVDYFAYPLSMKSYIRPGSAGNIPLYNYKQSFANPTCRVMASVLA-NVT 422 + C+ +++VD FA P S + ++ G++G + NYK A +C++ S+ NVT Sbjct 378 SKVYGMCFGSVSVDKFAIPRSRQIDLQIGNSGFLQTANYKIDTAATSCQLYYSLPKNNVT 437 Query 423 I 423 I Sbjct 438 I 438 Range 2: 630 to 758 Score:56.6 bits(135), Expect:6e-07, Method:Compositional matrix adjust., Identities:44/139(32%), Positives:65/139(46%), Gaps:14/139(10%) Query 534 GKCVDYSLYGVTGRGVFQNCTAVGVKQ-QRFVYDSFDNLVGYYSDDGNY-YCVRPCVSVP 591 G CV Y LYG+TG+GVF+ A Q +YD NL G+ N Y +R C S Sbjct 630 GVCVRYDLYGITGQGVFKEVKADYYNSWQALLYDVNGNLNGFRDLTTNKTYTIRSCYSGR 689 Query 592 VSVIYDKSTNLHATLFGSVACEHVTTMMSQFSRLTQSNLRRRDSNIP-LQTAVGCVIGLS 650 VS Y K A L+ ++ C +V T +N+ R ++ + + +GCV+ Sbjct 690 VSAAYHKEAPEPALLYRNINCSYVFT----------NNISREENPLNYFDSYLGCVVNAD 739 Query 651 NN-SLVVSDCKLPLGQSLC 668 N + +C L +G LC Sbjct 740 NRPDEALPNCDLRMGAGLC 758 >RecName: Full=Spike glycoprotein; Short=S glycoprotein; AltName: Full=E2; AltName: Full=Peplomer protein; Contains: RecName: Full=Spike protein S1; Contains: RecName: Full=Spike protein S2; Contains: RecName: Full=Spike protein S2'; Flags: Precursor [Bat CoV 279/2005] Sequence ID: Q0Q475.1 Length: 1241 Range 1: 226 to 644 Score:100 bits(248), Expect:2e-20, Method:Compositional matrix adjust., Identities:113/463(24%), Positives:183/463(39%), Gaps:54/463(11%) Query 217 LPVYEGIKYYTVIPRSFRS-KANKREAWAAFYVYKLHQLTYLLDFSVDGYIRRAIDCGHD 275 LP I Y V+ F +N AA+YV L T++L F+ +G I A+DC + Sbjct 226 LPFGINITSYRVVMTMFSQFNSNFLPESAAYYVGNLKYTTFMLSFNENGTITDAVDCSQN 285 Query 276 DLSQLHCSYTSFEVDTGVYSVSSYEASATGTFIEQPNAT-ECDFSPMLTGVA-PQVYNFK 333 L++L C+ +F V G+Y S++ + T + PN T C F + P VY ++ Sbjct 286 PLAELKCTIKNFNVSKGIYQTSNFRVTPTQEVVRFPNITNRCPFDKVFNASRFPNVYAWE 345 Query 334 RLVFSNCNYNLTKLLSLFAVDEFSCNGISPDSIARGCYSTLTVDYFAYPLSMKSYIRPGS 393 R S+C + T L + + F C G+SP + C++++ D F S + PG Sbjct 346 RTKISDCVADYTVLYNSTSFSTFKCYGVSPSKLIDLCFTSVYADTFLIRSSEVRQVAPGE 405 Query 394 AGNIPLYNYKQSFANPTCRVMASVLANVTITKPHAYGYISKCSRLTGANQDVETPLYINP 453 G I YNYK C + + A QD Sbjct 406 TGVIADYNYKLPDDFTGCVIAWNT-----------------------AQQD--------Q 434 Query 454 GEYSICRDFSPGGFSEDGQVFKRTLTQFEGGGLLIGVGT---RVPMTDNLQMSFIISVQY 510 G+Y R + E + F+R L+ E G + +P+ ++S + Sbjct 435 GQYYY-RSYR----KEKLKPFERDLSSDENGVYTLSTYDFYPSIPVEYQATRVVVLSFEL 489 Query 511 GTGTDSVCPMLDLGDSLTITNRLGKCVDYSLYGVTGRGVFQNCTAVGVKQQRFVYDSFDN 570 +VC G L+ +CV+++ G+ G GV + Q+F D+ D Sbjct 490 LNAPATVC-----GPKLSTQLVKNQCVNFNFNGLRGTGVLTTSSKRFQSFQQFGRDTSD- 543 Query 571 LVGYYSDDGNYYC--VRPCVSVPVSVIY--DKSTNLHATLFGSVACEHVTTMMSQFSRLT 626 D + PC VSVI +++ A L+ V C V T + Sbjct 544 FTDSVRDPQTLEILDISPCSFGGVSVITPGTNASSEVAVLYQDVNCTDVPTSIHADQLTP 603 Query 627 QSNLRRRDSNIPLQTAVGCVIGLSNNSLVVSDCKLPLGQSLCA 669 + N+ QT GC+IG + + +C +P+G +CA Sbjct 604 AWRVYSTGVNV-FQTQAGCLIGAEHVN-ASYECDIPIGAGICA 644 >RecName: Full=Spike glycoprotein; Short=S glycoprotein; AltName: Full=E2; AltName: Full=Peplomer protein; Contains: RecName: Full=Spike protein S1; Contains: RecName: Full=Spike protein S2; Contains: RecName: Full=Spike protein S2'; Flags: Precursor [Severe acute respiratory syndrome coronavirus 2] Sequence ID: P0DTC2.1 Length: 1273 Range 1: 232 to 424 Score:95.1 bits(235), Expect:8e-19, Method:Compositional matrix adjust., Identities:62/202(31%), Positives:92/202(45%), Gaps:15/202(7%) Query 208 GGNMFRFATLPVYEGIKYYTVIPRSFRSKANKREAW----AAFYVYKLHQLTYLLDFSVD 263 G N+ RF TL + RS+ + + W AA+YV L T+LL ++ + Sbjct 232 GINITRFQTL---------LALHRSYLTPGDSSSGWTAGAAAYYVGYLQPRTFLLKYNEN 282 Query 264 GYIRRAIDCGHDDLSQLHCSYTSFEVDTGVYSVSSYEASATGTFIEQPNATE-CDFSPML 322 G I A+DC D LS+ C+ SF V+ G+Y S++ T + + PN T C F + Sbjct 283 GTITDAVDCALDPLSETKCTLKSFTVEKGIYQTSNFRVQPTESIVRFPNITNLCPFGEVF 342 Query 323 TGVA-PQVYNFKRLVFSNCNYNLTKLLSLFAVDEFSCNGISPDSIARGCYSTLTVDYFAY 381 VY + R SNC + + L + + F C G+SP + C++ + D F Sbjct 343 NATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVI 402 Query 382 PLSMKSYIRPGSAGNIPLYNYK 403 I PG G I YNYK Sbjct 403 RGDEVRQIAPGQTGKIADYNYK 424 >RecName: Full=Spike glycoprotein; Short=S glycoprotein; AltName: Full=E2; AltName: Full=Peplomer protein; Contains: RecName: Full=Spike protein S1; Contains: RecName: Full=Spike protein S2; Contains: RecName: Full=Spike protein S2'; Flags: Precursor [Rat coronavirus (strain 681)] Sequence ID: Q9IKD1.1 Length: 1360 Range 1: 123 to 438 Score:94.0 bits(232), Expect:2e-18, Method:Compositional matrix adjust., Identities:84/348(24%), Positives:142/348(40%), Gaps:35/348(10%) Query 79 YPAFILGSSLTNTSAGQPLYANYSLTIIPDGCGTVLHAFYCILKPRTVNRCPSGTGYVSY 138 +P I+GS+ NTS T++ + ++ A C Y Sbjct 123 FPTIIIGSNFVNTS----------YTVVLEPYNGIIMASIC-----------------QY 155 Query 139 FIYETVHNDCQSTINRNASLNSFKSFFDLVNCTFFNSWDITADETKEWFGITQDTQGVHL 198 I + H DC+ N + + + DL + T + EW QG Sbjct 156 TICQLPHTDCKPNTGGNTLIGFWHT--DLRPPVCILKRNFTFNVNAEWLYFHFYQQGGTF 213 Query 199 YSSRKGDLYGGNMFRFATLPVYEGIKYYTVIPRSFRSKANKREAWAAFYVYKLHQLTYLL 258 Y+ D+ F F++ + + Y V+P S + ++V L + YL Sbjct 214 YA-YYADVSSATTFLFSSY-IGAVLTQYFVLPY-MCSPTTSGVSSPQYWVTPLVKRQYLF 270 Query 259 DFSVDGYIRRAIDCGHDDLSQLHCSYTSFEVDTGVYSVSSYEASATGTFIEQ-PNATECD 317 +F+ G I A+DC S++ C S +TGVY +S Y G + N +C Sbjct 271 NFNQKGIITSAVDCASSYTSEIKCKTQSMNPNTGVYDLSGYTVQPVGLVYRRVRNLPDCK 330 Query 318 FSPMLTG-VAPQVYNFKRLVFSNCNYNLTKLLSLFAVDEFSCNGISPDSIARGCYSTLTV 376 L P N++R F NCN+NL+ LL + SC+ I + C+ ++++ Sbjct 331 IEEWLAANTVPSPLNWERKTFQNCNFNLSSLLRFVQAESLSCSNIDASKVYGMCFGSISI 390 Query 377 DYFAYPLSMKSYIRPGSAGNIPLYNYKQSFANPTCRVMASVLA-NVTI 423 D FA P S + ++ G +G + +NYK +C++ S+ NVT+ Sbjct 391 DKFAIPNSRRVDLQLGKSGLLQSFNYKIDTRATSCQLYYSLAQDNVTV 438 Range 2: 617 to 745 Score:53.1 bits(126), Expect:8e-06, Method:Compositional matrix adjust., Identities:44/139(32%), Positives:65/139(46%), Gaps:14/139(10%) Query 534 GKCVDYSLYGVTGRGVFQNCTAVGVKQ-QRFVYDSFDNLVGYYSDDGNY-YCVRPCVSVP 591 G CV Y LYG TG+GVF+ A Q +YD NL G+ N Y +R C S Sbjct 617 GVCVKYDLYGSTGQGVFKEVKADYYNSWQNLLYDVNGNLNGFRDIVTNKTYLLRSCYSGR 676 Query 592 VSVIYDKSTNLHATLFGSVACEHVTTMMSQFSRLTQSNLRRRDSNIP-LQTAVGCVIGLS 650 VS Y + A L+ ++ C++V +N+ R ++ + + +GCVI Sbjct 677 VSAAYHQDAPEPALLYRNLKCDYV----------FNNNISREETPLNYFDSYLGCVINAD 726 Query 651 NNS-LVVSDCKLPLGQSLC 668 N++ V C L +G LC Sbjct 727 NSTEQSVDACDLRMGSGLC 745 >RecName: Full=Spike glycoprotein; Short=S glycoprotein; AltName: Full=E2; AltName: Full=Peplomer protein; Contains: RecName: Full=Spike protein S1; Contains: RecName: Full=Spike protein S2; Contains: RecName: Full=Spike protein S2'; Flags: Precursor [Rousettus bat coronavirus HKU9] Sequence ID: A3EXG6.1 Length: 1274 Range 1: 504 to 662 Score:75.5 bits(184), Expect:1e-12, Method:Compositional matrix adjust., Identities:53/169(31%), Positives:92/169(54%), Gaps:13/169(7%) Query 505 IISVQYGTGTDSVCPMLDLGDSLTITNRLGKCVDYSLYGVTGRGVFQNCTAVGVKQQR-F 563 +I+++ G+ VCP+ + D++ IT+R CV Y+LYG TG GV T++ + + F Sbjct 504 VITLKPAAGSKLVCPVAN--DTVVITDR---CVQYNLYGYTGTGVLSKNTSLVIPDGKVF 558 Query 564 VYDSFDNLVGYYSDDGNYYCVRPCVSVPVSVIYDKSTNLHATLFGSVACEHVTTMMSQ-F 622 S ++G S + Y + PCV+VPVSV Y + A LF ++C + +++ Sbjct 559 TASSTGTIIG-VSINSTTYSIMPCVTVPVSVGYHPNFE-RALLFNGLSCSQRSRAVTEPV 616 Query 623 SRLTQSNLRRRDSNIPLQTAVGCVIGLS-NNSLVVSDCKLPLGQSLCAV 670 S L ++ +D+ T GCV+ + N+ +V+ C +P+G SLC + Sbjct 617 SVLWSASATAQDA---FDTPSGCVVNVELRNTTIVNTCAMPIGNSLCFI 662 Range 2: 287 to 418 Score:59.7 bits(143), Expect:7e-08, Method:Compositional matrix adjust., Identities:34/132(26%), Positives:59/132(44%), Gaps:0/132(0%) Query 246 FYVYKLHQLTYLLDFSVDGYIRRAIDCGHDDLSQLHCSYTSFEVDTGVYSVSSYEASATG 305 +V L L+ + +G + A DC +L+C SF+ TGVY +S Y A G Sbjct 287 LHVAHLINRDLLVSYFNNGSVANAADCADSAAEELYCVTGSFDPPTGVYPLSRYRAQVAG 346 Query 306 TFIEQPNATECDFSPMLTGVAPQVYNFKRLVFSNCNYNLTKLLSLFAVDEFSCNGISPDS 365 + C + PQ ++R + +C ++ T ++ + C G+SP Sbjct 347 FVRVTQRGSYCTPPYSVLQDPPQPVVWRRYMLYDCVFDFTVVVDSLPTHQLQCYGVSPRR 406 Query 366 IARGCYSTLTVD 377 +A CY ++T+D Sbjct 407 LASMCYGSVTLD 418