BLASTN 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= AF052007 AF052007.1 Escherichia coli N-acetylglucosamine-6-phosphate isomerase (nagB), N-acetylglucosamine-6-phosphate deacetylase (nagA), N-acetylglucosamine repressor (nagC), and NagD (nagD) genes, complete cds. (801 letters) Database: pm 884 sequences; 12,243,887 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value AE008727 AE006468 |AE008727| Salmonella typhimurium LT2, section... 658 0.0 embl|AE006126|AE006126 Pasteurella multocida subsp. multocida st... 68 3e-11 >AE008727 AE006468 |AE008727| Salmonella typhimurium LT2, section 35 of 220 of the complete genome. Length = 22671 Score = 658 bits (332), Expect = 0.0 Identities = 687/804 (85%), Gaps = 6/804 (0%) Strand = Plus / Minus Query: 1 atgagactgatccccctgactaccgctgaacaggtcggcaaatgggctgctcgccatatc 60 ||||||||||||||||||| |||||| |||||||| ||||||||||| |||||||||||| Sbjct: 12266 atgagactgatccccctgagtaccgcagaacaggttggcaaatgggccgctcgccatatc 12207 Query: 61 gtcaatcgtatcaatgcgttcaaaccgactgccgatcgtccgtttgtactgggcctgccg 120 || || ||||| ||||||||||||||||| ||||||||||||||||| || || ||||| Sbjct: 12206 gttaaccgtattaatgcgttcaaaccgaccgccgatcgtccgtttgtccttggactgcct 12147 Query: 121 actggcggcacgccgatgaccacctataaagcgttagtcgaaatgcataaagcaggccag 180 || |||||||||||| | || | || |||||| | || || ||||| ||||| ||| || Sbjct: 12146 accggcggcacgccgctaacggcgtacaaagcgctggttgagatgcacaaagcgggcgag 12087 Query: 181 gtcagctttaagcacgttgtcaccttcaacatgatggacgaatatgtcggtctgccgaaa 240 |||||||||||||| || |||||||| || ||| ||||||||||| || ||||||||| Sbjct: 12086 gtcagctttaagcatgtggtcacctttaatatg---gacgaatatgttggcctgccgaaa 12030 Query: 241 gagcatccggaaagctactacagctttatgcac---aatttcttcgatcacgttgatatt 297 |||||||||||||||||| ||||||||||||| || || |||||||||||||||||| Sbjct: 12029 gagcatccggaaagctaccacagctttatgcatcgtaactttttcgatcacgttgatatt 11970 Query: 298 ccagcagaaaacatcaaccttctcaacggcaacgccccggatatcgacgccgagtgccgc 357 ||||||||||||||||| ||||||||||| ||||| ||||||||||| || || ||||| Sbjct: 11969 ccagcagaaaacatcaatcttctcaacggtaacgcaccggatatcgatgcagaatgccgt 11910 Query: 358 cagtatgaagaaaaaatccgttcttacggaaaaattcatctgtttatgggcggtgtaggt 417 || |||||||||||||| ||||||||||| ||||| ||||||||||||||||| || || Sbjct: 11909 caatatgaagaaaaaattcgttcttacggtaaaatccatctgtttatgggcggcgtcggc 11850 Query: 418 aacgacggtcatattgcatttaacgaaccggcgtcttctctggcttctcgtactcgtatc 477 ||||||||||| || || |||||||||||||||||||| |||||||| || || |||||| Sbjct: 11849 aacgacggtcacatcgcctttaacgaaccggcgtcttccctggcttcccgcacccgtatc 11790 Query: 478 aaaaccctgactcatgacactcgcgtcgcaaactctcgtttctttgataacgatgttaat 537 ||||| | || ||||| |||||||| || ||||| || |||||||| ||| || || Sbjct: 11789 aaaacgttaacccatgatactcgcgtagcgaactcccgcttctttgacggcgacgtaaac 11730 Query: 538 caggtgccaaaatatgccctgactgtcggtgttggtacactgctggatgccgaagaagtg 597 |||||||| ||||| || ||||| || || || ||||| ||||||||||| ||||||||| Sbjct: 11729 caggtgccgaaatacgcgctgacggtaggcgtgggtactctgctggatgcggaagaagtg 11670 Query: 598 atgattctggtgctgggtagccagaaagcactggcgctgcaggccgccgttgaaggttgc 657 ||||||||||||||||| |||||||| | |||||||||||| || |||||||| | Sbjct: 11669 atgattctggtgctgggccatcagaaagcccaggcgctgcaggcggcggttgaaggcaac 11610 Query: 658 gtgaaccatatgtggaccatcagctgtctgcaactgcatccgaaagcgatcatggtgtgc 717 || ||||| ||||||||||| ||||| |||||||| |||||||||||| | |||| ||| Sbjct: 11609 gtcaaccacatgtggaccattagctgcctgcaactccatccgaaagcggttgtggtatgc 11550 Query: 718 gatgaaccttccaccatggagctgaaagttaagactttaagatatttcaatgaattagaa 777 ||||| || ||||| ||||| || |||||||| || || | ||||||||||||||||||| Sbjct: 11549 gatgagccgtccacaatggaacttaaagttaaaacattgaaatatttcaatgaattagaa 11490 Query: 778 gcagaaaatatcaaaggtctgtaa 801 ||||||||||| |||||||||||| Sbjct: 11489 gcagaaaatattaaaggtctgtaa 11466 >embl|AE006126|AE006126 Pasteurella multocida subsp. multocida str. Pm70 section 93 of 204 of the complete genome. Length = 12635 Score = 67.9 bits (34), Expect = 3e-11 Identities = 82/98 (83%) Strand = Plus / Minus Query: 508 aactctcgtttctttgataacgatgttaatcaggtgccaaaatatgccctgactgtcggt 567 ||||| |||||||||||||||||||||||| | ||||| |||||||| || || | ||| Sbjct: 3322 aactcacgtttctttgataacgatgttaataaagtgcctaaatatgcactcaccattggt 3263 Query: 568 gttggtacactgctggatgccgaagaagtgatgattct 605 || || || | || ||||| ||||||||||||||||| Sbjct: 3262 gtggggacgttacttgatgcagaagaagtgatgattct 3225 Score = 50.1 bits (25), Expect = 8e-06 Identities = 73/89 (82%) Strand = Plus / Minus Query: 361 tatgaagaaaaaatccgttcttacggaaaaattcatctgtttatgggcggtgtaggtaac 420 |||||||| |||||| ||||| || ||||||||| | || ||||||||||| ||| Sbjct: 3469 tatgaagagaaaatcaagtcttatggcaaaattcatttattcatgggcggtgttggtgta 3410 Query: 421 gacggtcatattgcatttaacgaaccggc 449 || ||||||||||| ||||| |||||||| Sbjct: 3409 gatggtcatattgcttttaatgaaccggc 3381 Database: pm Posted date: Oct 28, 2008 2:30 AM Number of letters in database: 12,243,887 Number of sequences in database: 884 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Sequences: 884 Number of Hits to DB: 108,639 Number of extensions: 6759 Number of successful extensions: 47 Number of sequences better than 1.0e-03: 2 Number of HSP's gapped: 44 Number of HSP's successfully gapped: 4 Length of query: 801 Length of database: 12,243,887 Length adjustment: 17 Effective length of query: 784 Effective length of database: 12,228,859 Effective search space: 9587425456 Effective search space used: 9587425456 X1: 11 (21.8 bits) X2: 15 (29.7 bits) X3: 25 (49.6 bits) S1: 15 (30.2 bits) S2: 22 (44.1 bits)