TBLASTN 2.2.15 [Oct-15-2006]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|67469257|sp|P0A759.1|NAGB_ECOLI RecName:
Full=Glucosamine-6-phosphate deaminase; AltName:
Full=Glucosamine-6-phosphate isomerase; AltName: Full=GlcN6P
deaminase; Short=GNPDA
         (266 letters)

Database: pm 
           204 sequences; 2,269,587 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

embl|AE006126|AE006126 Pasteurella multocida subsp. multocida st...   403   e-114
embl|AE006192|AE006192 Pasteurella multocida subsp. multocida st...    51   6e-08

>embl|AE006126|AE006126 Pasteurella multocida subsp. multocida str.
            Pm70 section 93 of 204 of the complete genome.
          Length = 12635

 Score =  403 bits (1035), Expect = e-114
 Identities = 193/266 (72%), Positives = 227/266 (85%)
 Frame = -2

Query: 1    MRLIPLTTAEQVGKWAARHIVNRINAFKPTADRPFVXXXXXXXXXXXXYKALVEMHKAGQ 60
            MRLIPL   +QV KW+AR+IV+RIN F+PT  RPFV            Y+AL+E++KAG+
Sbjct: 3829 MRLIPLHNVDQVAKWSARYIVDRINQFQPTEARPFVLGLPTGGTPLKTYEALIELYKAGE 3650

Query: 61   VSFKHVVTFNMDEYVGLPKEHPESYYSFMHRNFFDHVDIPAENINLLNGNAPDIDAECRQ 120
            VSFKHVVTFNMDEYVGLPKEHPESY+SFM++NFFDHVDI  +NIN+LNGN  D DAEC++
Sbjct: 3649 VSFKHVVTFNMDEYVGLPKEHPESYHSFMYKNFFDHVDIQEKNINILNGNTEDHDAECQR 3470

Query: 121  YEEKIRSYGKIHLFMGGVGNDGHIAFNEPASSLASRTRIKTLTHDTRVANSRFFDNDVNQ 180
            YEEKI+SYGKIHLFMGGVG DGHIAFNEPASSL+SRTRIKTLT DT +ANSRFFDNDVN+
Sbjct: 3469 YEEKIKSYGKIHLFMGGVGVDGHIAFNEPASSLSSRTRIKTLTEDTLIANSRFFDNDVNK 3290

Query: 181  VPKYALTVGVGTLLDAEEVMILVLGSQKALALQAAVEGCVNHMWTISCLQLHPKAIMVCD 240
            VPKYALT+GVGTLLDAEEVMILV G  KA ALQAAVEG +NH+WT++ LQ+H +AI+VCD
Sbjct: 3289 VPKYALTIGVGTLLDAEEVMILVTGYNKAQALQAAVEGSINHLWTVTALQMHRRAIIVCD 3110

Query: 241  EPSTMELKVKTLRYFNELEAENIKGL 266
            EP+T ELKVKT++YF ELEA  I+ +
Sbjct: 3109 EPATQELKVKTVKYFTELEASAIRSV 3032


>embl|AE006192|AE006192 Pasteurella multocida subsp. multocida str.
           Pm70 section 159 of 204 of the complete genome.
          Length = 10029

 Score = 51.2 bits (121), Expect = 6e-08
 Identities = 26/72 (36%), Positives = 44/72 (61%), Gaps = 3/72 (4%)
 Frame = +1

Query: 77  LPKEHPESYYSFMHRNFFDHVDIPAENINLLNGNAPDIDAECRQYEEKIRSYGKIHLF-- 134
           +P   PES Y  + +  FDH+ IPAENI+ + G AP +++E +++E+ + +     +F  
Sbjct: 244 VPPTDPESNYGEVQKLLFDHIQIPAENIHRIRGEAP-VESELQRFEQALSAVIPGQVFDW 420

Query: 135 -MGGVGNDGHIA 145
            + G+G DGH A
Sbjct: 421 IILGMGTDGHTA 456


  Database: pm
    Posted date:  Oct 28, 2008  1:13 AM
  Number of letters in database: 2,269,587
  Number of sequences in database:  204
  
Lambda     K      H
   0.321    0.135    0.404 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 204
Number of Hits to DB: 616,527
Number of extensions: 8126
Number of successful extensions: 32
Number of sequences better than 1.0e-03: 2
Number of HSP's gapped: 32
Number of HSP's successfully gapped: 2
Length of query: 266
Length of database: 756,529
Length adjustment: 80
Effective length of query: 186
Effective length of database: 740,209
Effective search space: 137678874
Effective search space used: 137678874
Neighboring words threshold: 13
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 45 (21.9 bits)