RID: 570SFMW9013
Job Title:Protein Sequence
Program: BLASTP
Database: swissprot Non-redundant UniProtKB/SwissProt sequences
Query #1: Query ID: lcl|Query_5922779 Length: 306
Sequences producing significant alignments:
Scientific Common Max Total Query E Per. Acc.
Description Name Name Taxid Score Score cover Value Ident Len Accession
RecName: Full=Replicase polyprotein 1a; Short=pp1a; AltName:... Bat SARS cor... NA 442736 651 651 100% 0.0 100.00 4376 P0C6F8.1
RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName:... Bat SARS cor... NA 442736 650 650 100% 0.0 100.00 7067 P0C6W2.1
RecName: Full=Replicase polyprotein 1a; Short=pp1a; AltName:... Severe acute... NA 694009 649 649 100% 0.0 99.35 4382 P0C6U8.1
RecName: Full=Replicase polyprotein 1a; Short=pp1a; AltName:... Bat CoV 279/... NA 389167 647 647 100% 0.0 99.02 4388 P0C6F5.1
RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName:... Severe acute... NA 694009 647 647 100% 0.0 99.35 7073 P0C6X7.1
RecName: Full=Replicase polyprotein 1a; Short=pp1a; AltName:... Bat SARS CoV... NA 349344 647 647 100% 0.0 99.02 4380 P0C6T7.1
RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName:... Bat CoV 279/... NA 389167 646 646 100% 0.0 99.02 7079 P0C6V9.1
RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName:... Bat SARS CoV... NA 349344 645 645 100% 0.0 99.02 7071 P0C6W6.1
RecName: Full=Replicase polyprotein 1a; Short=pp1a; AltName:... Severe acute... NA 2697049 632 632 100% 0.0 95.42 4405 P0DTC1.1
RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName:... Severe acute... NA 2697049 629 629 100% 0.0 95.42 7096 P0DTD1.1
RecName: Full=Replicase polyprotein 1a; Short=pp1a; AltName:... Rousettus ba... NA 694006 341 341 100% 9e-106 51.96 4248 P0C6T6.1
RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName:... Rousettus ba... NA 694006 340 340 100% 2e-105 51.96 6930 P0C6W5.1
RecName: Full=Replicase polyprotein 1a; Short=pp1a; AltName:... Betacoronavi... NA 1263720 327 327 100% 6e-101 51.94 4391 K9N638.1
RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName:... Betacoronavi... NA 1263720 327 327 100% 1e-100 51.94 7078 K9N7C7.1
RecName: Full=Replicase polyprotein 1a; Short=pp1a; AltName:... Pipistrellus... NA 694008 317 317 100% 4e-97 50.97 4481 P0C6T5.1
RecName: Full=Replicase polyprotein 1a; Short=pp1a; AltName:... Tylonycteris... NA 694007 316 316 100% 6e-97 50.97 4434 P0C6T4.1
RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName:... Pipistrellus... NA 694008 315 315 100% 1e-96 50.97 7182 P0C6W4.1
RecName: Full=Replicase polyprotein 1a; Short=pp1a; AltName:... Bat coronavi... NA 389230 315 315 100% 1e-96 50.97 4441 P0C6F7.1
RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName:... Tylonycteris... NA 694007 315 315 100% 2e-96 50.97 7119 P0C6W3.1
RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName:... Bat coronavi... NA 389230 314 314 100% 3e-96 50.97 7126 P0C6W1.1
RecName: Full=Replicase polyprotein 1a; Short=pp1a; AltName:... Murine hepat... NA 11144 308 308 100% 3e-94 50.00 4474 P0C6V1.1
RecName: Full=Replicase polyprotein 1a; Short=pp1a; AltName:... Murine hepat... NA 76344 308 308 100% 3e-94 50.00 4416 P0C6U9.1
RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName:... Murine hepat... NA 11144 308 308 100% 4e-94 50.00 7180 P0C6Y0.1
RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName:... Murine hepat... NA 76344 308 308 100% 5e-94 50.00 7124 P0C6X8.1
RecName: Full=Replicase polyprotein 1a; Short=pp1a; AltName:... Murine hepat... NA 11142 305 305 100% 3e-93 50.00 4468 P0C6V0.1
RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName:... Murine hepat... NA 11142 305 305 100% 4e-93 50.00 7176 P0C6X9.1
RecName: Full=Replicase polyprotein 1a; Short=pp1a; AltName:... Bovine coron... NA 11133 304 304 100% 8e-93 48.37 4383 P0C6U1.1
RecName: Full=Replicase polyprotein 1a; Short=pp1a; AltName:... Human corona... NA 31631 304 304 100% 1e-92 48.37 4383 P0C6U7.1
RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName:... Bovine coron... NA 11133 303 303 100% 1e-92 48.37 7059 P0C6X0.1
RecName: Full=Replicase polyprotein 1a; Short=pp1a; AltName:... Bovine respi... NA 233264 303 303 100% 2e-92 48.04 4383 P0C6T9.1
RecName: Full=Replicase polyprotein 1a; Short=pp1a; AltName:... Bovine enter... NA 233262 303 303 100% 2e-92 48.04 4383 P0C6T8.1
RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName:... Human corona... NA 31631 303 303 100% 2e-92 48.37 7095 P0C6X6.1
RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName:... Bovine enter... NA 233262 303 303 100% 2e-92 48.04 7094 P0C6W7.1
RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName:... Bovine respi... NA 233264 303 303 100% 2e-92 48.04 7094 P0C6W8.1
RecName: Full=Replicase polyprotein 1a; Short=pp1a; AltName:... Human corona... NA 443241 298 298 100% 8e-91 48.04 4421 P0C6U5.1
RecName: Full=Replicase polyprotein 1a; Short=pp1a; AltName:... Human corona... NA 443239 298 298 100% 1e-90 48.04 4471 P0C6U3.1
RecName: Full=Replicase polyprotein 1a; Short=pp1a; AltName:... Human corona... NA 443240 298 298 100% 1e-90 48.04 4441 P0C6U4.1
RecName: Full=Replicase polyprotein 1a; Short=pp1a; AltName:... Bovine coron... NA 11132 298 298 100% 1e-90 47.71 4383 P0C6U0.1
RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName:... Human corona... NA 443241 298 298 100% 1e-90 48.04 7132 P0C6X4.1
RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName:... Human corona... NA 443239 298 298 100% 1e-90 48.04 7182 P0C6X2.1
RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName:... Bovine coron... NA 11132 297 297 100% 2e-90 47.71 7094 P0C6W9.1
RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName:... Human corona... NA 443240 297 297 100% 2e-90 48.04 7152 P0C6X3.1
RecName: Full=Replicase polyprotein 1a; Short=pp1a; AltName:... Scotophilus ... NA 693999 276 276 100% 7e-83 46.58 4128 P0C6F6.1
RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName:... Scotophilus ... NA 693999 275 275 100% 1e-82 46.58 6793 P0C6W0.1
RecName: Full=Replicase polyprotein 1a; Short=pp1a; AltName:... Porcine epid... NA 229032 263 263 100% 1e-78 44.77 4117 P0C6V6.1
RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName:... Porcine epid... NA 229032 262 262 100% 3e-78 44.77 6781 P0C6Y4.1
RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName:... Feline infec... NA 33734 250 250 100% 4e-74 43.14 6709 Q98VG9.2
RecName: Full=Replicase polyprotein 1a; Short=pp1a; AltName:... Porcine tran... NA 11151 249 249 100% 2e-73 43.14 4017 P0C6V2.1
RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName:... Porcine tran... NA 11151 248 248 100% 3e-73 43.14 6684 P0C6Y5.1
RecName: Full=Replicase polyprotein 1a; Short=pp1a; AltName:... Human corona... NA 277944 248 248 100% 4e-73 43.65 4060 P0C6U6.1
RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName:... Human corona... NA 277944 248 248 100% 4e-73 43.65 6729 P0C6X5.1
RecName: Full=Replicase polyprotein 1a; Short=pp1a; AltName:... Human corona... NA 11137 232 232 100% 9e-68 39.74 4085 P0C6U2.1
RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName:... Human corona... NA 11137 232 232 100% 1e-67 39.74 6758 P0C6X1.1
RecName: Full=Replicase polyprotein 1a; Short=pp1a; AltName:... Avian infect... NA 11122 229 229 100% 1e-66 40.19 3951 P0C6V3.1
RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName:... Avian infect... NA 11122 228 228 100% 2e-66 40.19 6629 P0C6Y1.1
RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName:... Avian infect... NA 160235 228 228 100% 2e-66 40.19 6629 P0C6Y2.1
RecName: Full=Replicase polyprotein 1a; Short=pp1a; AltName:... Avian infect... NA 11127 226 226 100% 1e-65 39.87 3953 P0C6V5.1
RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName:... Avian infect... NA 11127 225 225 100% 3e-65 39.87 6631 P0C6Y3.1
Alignments:
>RecName: Full=Replicase polyprotein 1a; Short=pp1a; AltName: Full=ORF1a polyprotein; Contains: RecName: Full=Non-structural protein 1; Short=nsp1; AltName: Full=Leader protein; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p65 homolog; Contains: RecName: Full=Papain-like protease nsp3; Short=PL-PRO; AltName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=PL2-PRO; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; Contains: RecName: Full=3C-like proteinase nsp5; Short=3CL-PRO; Short=3CLp; AltName: Full=nsp5; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; Contains: RecName: Full=RNA-capping enzyme subunit nsp9; AltName: Full=Non-structural protein 9; Short=nsp9; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; Contains: RecName: Full=Non-structural protein 11; Short=nsp11 [Bat SARS coronavirus HKU3]
Sequence ID: P0C6F8.1 Length: 4376
Range 1: 3235 to 3540
Score:651 bits(1680), Expect:0.0,
Method:Compositional matrix adjust.,
Identities:306/306(100%), Positives:306/306(100%), Gaps:0/306(0%)
Query 1 SGFRKMAFPSGKVEGCMVQVTCGTTTLNGLWLDDTVYCPRHVVCTAEDMLNPNYDDLLIR 60
SGFRKMAFPSGKVEGCMVQVTCGTTTLNGLWLDDTVYCPRHVVCTAEDMLNPNYDDLLIR
Sbjct 3235 SGFRKMAFPSGKVEGCMVQVTCGTTTLNGLWLDDTVYCPRHVVCTAEDMLNPNYDDLLIR 3294
Query 61 KSNHSFLVQAGNVQLRVIGHSMQNCLLRLKVDTSNPKTPKYKFVRIQPGQTFSVLACYNG 120
KSNHSFLVQAGNVQLRVIGHSMQNCLLRLKVDTSNPKTPKYKFVRIQPGQTFSVLACYNG
Sbjct 3295 KSNHSFLVQAGNVQLRVIGHSMQNCLLRLKVDTSNPKTPKYKFVRIQPGQTFSVLACYNG 3354
Query 121 SPSGVYQCAMRPNHTIKGSFLNGSCGSVGFNIDYDCVSFCYMHHMELPTGVHAGTDLEGK 180
SPSGVYQCAMRPNHTIKGSFLNGSCGSVGFNIDYDCVSFCYMHHMELPTGVHAGTDLEGK
Sbjct 3355 SPSGVYQCAMRPNHTIKGSFLNGSCGSVGFNIDYDCVSFCYMHHMELPTGVHAGTDLEGK 3414
Query 181 FYGPFVDRQTAQAAGTDTTITLNVLAWLYAAVINGDRWFLNRFTTTLNDFNLVAMKYNYE 240
FYGPFVDRQTAQAAGTDTTITLNVLAWLYAAVINGDRWFLNRFTTTLNDFNLVAMKYNYE
Sbjct 3415 FYGPFVDRQTAQAAGTDTTITLNVLAWLYAAVINGDRWFLNRFTTTLNDFNLVAMKYNYE 3474
Query 241 PLTQDHVDILGPLSAQTGIAVLDMCAALKELLQNGMNGRTILGSTILEDEFTPFDVVRQC 300
PLTQDHVDILGPLSAQTGIAVLDMCAALKELLQNGMNGRTILGSTILEDEFTPFDVVRQC
Sbjct 3475 PLTQDHVDILGPLSAQTGIAVLDMCAALKELLQNGMNGRTILGSTILEDEFTPFDVVRQC 3534
Query 301 SGVTFQ 306
SGVTFQ
Sbjct 3535 SGVTFQ 3540
>RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Host translation inhibitor nsp1; Short=nsp1; AltName: Full=Leader protein; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p65 homolog; Contains: RecName: Full=Papain-like proteinase nsp3; Short=PL-PRO; AltName: Full=Non-structural protein 3; Short=nsp3; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; Contains: RecName: Full=3C-like proteinase nsp5; Short=3CL-PRO; Short=3CLp; AltName: Full=nsp5; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; Contains: RecName: Full=Viral protein genome-linked nsp9; AltName: Full=Non-structural protein 9; Short=nsp9; AltName: Full=RNA-capping enzyme subunit nsp9; AltName: Full=p12; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; Contains: RecName: Full=RNA-directed RNA polymerase nsp12; Short=Pol; Short=RdRp; AltName: Full=nsp12; Contains: RecName: Full=Helicase nsp13; Short=Hel; AltName: Full=nsp13; Contains: RecName: Full=Guanine-N7 methyltransferase nsp14; Short=ExoN; AltName: Full=nsp14; Contains: RecName: Full=Uridylate-specific endoribonuclease nsp15; AltName: Full=NendoU; AltName: Full=nsp15; Contains: RecName: Full=2'-O-methyltransferase nsp16; AltName: Full=nsp16 [Bat SARS coronavirus HKU3]
Sequence ID: P0C6W2.1 Length: 7067
Range 1: 3235 to 3540
Score:650 bits(1676), Expect:0.0,
Method:Compositional matrix adjust.,
Identities:306/306(100%), Positives:306/306(100%), Gaps:0/306(0%)
Query 1 SGFRKMAFPSGKVEGCMVQVTCGTTTLNGLWLDDTVYCPRHVVCTAEDMLNPNYDDLLIR 60
SGFRKMAFPSGKVEGCMVQVTCGTTTLNGLWLDDTVYCPRHVVCTAEDMLNPNYDDLLIR
Sbjct 3235 SGFRKMAFPSGKVEGCMVQVTCGTTTLNGLWLDDTVYCPRHVVCTAEDMLNPNYDDLLIR 3294
Query 61 KSNHSFLVQAGNVQLRVIGHSMQNCLLRLKVDTSNPKTPKYKFVRIQPGQTFSVLACYNG 120
KSNHSFLVQAGNVQLRVIGHSMQNCLLRLKVDTSNPKTPKYKFVRIQPGQTFSVLACYNG
Sbjct 3295 KSNHSFLVQAGNVQLRVIGHSMQNCLLRLKVDTSNPKTPKYKFVRIQPGQTFSVLACYNG 3354
Query 121 SPSGVYQCAMRPNHTIKGSFLNGSCGSVGFNIDYDCVSFCYMHHMELPTGVHAGTDLEGK 180
SPSGVYQCAMRPNHTIKGSFLNGSCGSVGFNIDYDCVSFCYMHHMELPTGVHAGTDLEGK
Sbjct 3355 SPSGVYQCAMRPNHTIKGSFLNGSCGSVGFNIDYDCVSFCYMHHMELPTGVHAGTDLEGK 3414
Query 181 FYGPFVDRQTAQAAGTDTTITLNVLAWLYAAVINGDRWFLNRFTTTLNDFNLVAMKYNYE 240
FYGPFVDRQTAQAAGTDTTITLNVLAWLYAAVINGDRWFLNRFTTTLNDFNLVAMKYNYE
Sbjct 3415 FYGPFVDRQTAQAAGTDTTITLNVLAWLYAAVINGDRWFLNRFTTTLNDFNLVAMKYNYE 3474
Query 241 PLTQDHVDILGPLSAQTGIAVLDMCAALKELLQNGMNGRTILGSTILEDEFTPFDVVRQC 300
PLTQDHVDILGPLSAQTGIAVLDMCAALKELLQNGMNGRTILGSTILEDEFTPFDVVRQC
Sbjct 3475 PLTQDHVDILGPLSAQTGIAVLDMCAALKELLQNGMNGRTILGSTILEDEFTPFDVVRQC 3534
Query 301 SGVTFQ 306
SGVTFQ
Sbjct 3535 SGVTFQ 3540
>RecName: Full=Replicase polyprotein 1a; Short=pp1a; AltName: Full=ORF1a polyprotein; Contains: RecName: Full=Host translation inhibitor nsp1; AltName: Full=Leader protein; AltName: Full=Non-structural protein 1; Short=nsp1; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p65 homolog; Contains: RecName: Full=Papain-like protease nsp3; Short=PL-PRO; AltName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=PL2-PRO; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; Contains: RecName: Full=3C-like proteinase nsp5; Short=3CL-PRO; Short=3CLp; AltName: Full=Main protease; Short=Mpro; AltName: Full=Non-structural protein 5; Short=nsp5; AltName: Full=SARS coronavirus main proteinase; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; Contains: RecName: Full=RNA-capping enzyme subunit nsp9; AltName: Full=Non-structural protein 9; Short=nsp9; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; Contains: RecName: Full=Non-structural protein 11; Short=nsp11 [Severe acute respiratory syndrome-related coronavirus]
Sequence ID: P0C6U8.1 Length: 4382
Range 1: 3241 to 3546
Score:649 bits(1675), Expect:0.0,
Method:Compositional matrix adjust.,
Identities:304/306(99%), Positives:306/306(100%), Gaps:0/306(0%)
Query 1 SGFRKMAFPSGKVEGCMVQVTCGTTTLNGLWLDDTVYCPRHVVCTAEDMLNPNYDDLLIR 60
SGFRKMAFPSGKVEGCMVQVTCGTTTLNGLWLDDTVYCPRHV+CTAEDMLNPNY+DLLIR
Sbjct 3241 SGFRKMAFPSGKVEGCMVQVTCGTTTLNGLWLDDTVYCPRHVICTAEDMLNPNYEDLLIR 3300
Query 61 KSNHSFLVQAGNVQLRVIGHSMQNCLLRLKVDTSNPKTPKYKFVRIQPGQTFSVLACYNG 120
KSNHSFLVQAGNVQLRVIGHSMQNCLLRLKVDTSNPKTPKYKFVRIQPGQTFSVLACYNG
Sbjct 3301 KSNHSFLVQAGNVQLRVIGHSMQNCLLRLKVDTSNPKTPKYKFVRIQPGQTFSVLACYNG 3360
Query 121 SPSGVYQCAMRPNHTIKGSFLNGSCGSVGFNIDYDCVSFCYMHHMELPTGVHAGTDLEGK 180
SPSGVYQCAMRPNHTIKGSFLNGSCGSVGFNIDYDCVSFCYMHHMELPTGVHAGTDLEGK
Sbjct 3361 SPSGVYQCAMRPNHTIKGSFLNGSCGSVGFNIDYDCVSFCYMHHMELPTGVHAGTDLEGK 3420
Query 181 FYGPFVDRQTAQAAGTDTTITLNVLAWLYAAVINGDRWFLNRFTTTLNDFNLVAMKYNYE 240
FYGPFVDRQTAQAAGTDTTITLNVLAWLYAAVINGDRWFLNRFTTTLNDFNLVAMKYNYE
Sbjct 3421 FYGPFVDRQTAQAAGTDTTITLNVLAWLYAAVINGDRWFLNRFTTTLNDFNLVAMKYNYE 3480
Query 241 PLTQDHVDILGPLSAQTGIAVLDMCAALKELLQNGMNGRTILGSTILEDEFTPFDVVRQC 300
PLTQDHVDILGPLSAQTGIAVLDMCAALKELLQNGMNGRTILGSTILEDEFTPFDVVRQC
Sbjct 3481 PLTQDHVDILGPLSAQTGIAVLDMCAALKELLQNGMNGRTILGSTILEDEFTPFDVVRQC 3540
Query 301 SGVTFQ 306
SGVTFQ
Sbjct 3541 SGVTFQ 3546
>RecName: Full=Replicase polyprotein 1a; Short=pp1a; AltName: Full=ORF1a polyprotein; Contains: RecName: Full=Non-structural protein 1; Short=nsp1; AltName: Full=Leader protein; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p65 homolog; Contains: RecName: Full=Papain-like protease nsp3; Short=PL-PRO; AltName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=PL2-PRO; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; Contains: RecName: Full=3C-like proteinase nsp5; Short=3CL-PRO; Short=3CLp; AltName: Full=nsp5; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; Contains: RecName: Full=RNA-capping enzyme subunit nsp9; AltName: Full=Non-structural protein 9; Short=nsp9; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; Contains: RecName: Full=Non-structural protein 11; Short=nsp11 [Bat CoV 279/2005]
Sequence ID: P0C6F5.1 Length: 4388
Range 1: 3247 to 3552
Score:647 bits(1670), Expect:0.0,
Method:Compositional matrix adjust.,
Identities:303/306(99%), Positives:306/306(100%), Gaps:0/306(0%)
Query 1 SGFRKMAFPSGKVEGCMVQVTCGTTTLNGLWLDDTVYCPRHVVCTAEDMLNPNYDDLLIR 60
SGFRKMAFPSGKVEGCMVQVTCGTTTLNGLWLDDTVYCPRHV+CTAEDMLNPNY+DLLIR
Sbjct 3247 SGFRKMAFPSGKVEGCMVQVTCGTTTLNGLWLDDTVYCPRHVICTAEDMLNPNYEDLLIR 3306
Query 61 KSNHSFLVQAGNVQLRVIGHSMQNCLLRLKVDTSNPKTPKYKFVRIQPGQTFSVLACYNG 120
KSNHSFLVQAGNVQLRVIGHSMQNCLLRLKVDTSNPKTPKYKFVRIQPGQTFSVLACYNG
Sbjct 3307 KSNHSFLVQAGNVQLRVIGHSMQNCLLRLKVDTSNPKTPKYKFVRIQPGQTFSVLACYNG 3366
Query 121 SPSGVYQCAMRPNHTIKGSFLNGSCGSVGFNIDYDCVSFCYMHHMELPTGVHAGTDLEGK 180
SPSGVYQCAMRPN+TIKGSFLNGSCGSVGFNIDYDCVSFCYMHHMELPTGVHAGTDLEGK
Sbjct 3367 SPSGVYQCAMRPNYTIKGSFLNGSCGSVGFNIDYDCVSFCYMHHMELPTGVHAGTDLEGK 3426
Query 181 FYGPFVDRQTAQAAGTDTTITLNVLAWLYAAVINGDRWFLNRFTTTLNDFNLVAMKYNYE 240
FYGPFVDRQTAQAAGTDTTITLNVLAWLYAAVINGDRWFLNRFTTTLNDFNLVAMKYNYE
Sbjct 3427 FYGPFVDRQTAQAAGTDTTITLNVLAWLYAAVINGDRWFLNRFTTTLNDFNLVAMKYNYE 3486
Query 241 PLTQDHVDILGPLSAQTGIAVLDMCAALKELLQNGMNGRTILGSTILEDEFTPFDVVRQC 300
PLTQDHVDILGPLSAQTGIAVLDMCAALKELLQNGMNGRTILGSTILEDEFTPFDVVRQC
Sbjct 3487 PLTQDHVDILGPLSAQTGIAVLDMCAALKELLQNGMNGRTILGSTILEDEFTPFDVVRQC 3546
Query 301 SGVTFQ 306
SGVTFQ
Sbjct 3547 SGVTFQ 3552
>RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Host translation inhibitor nsp1; AltName: Full=Leader protein; AltName: Full=Non-structural protein 1; Short=nsp1; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p65 homolog; Contains: RecName: Full=Papain-like protease nsp3; Short=PL-PRO; AltName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=PL2-PRO; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; Contains: RecName: Full=3C-like proteinase nsp5; Short=3CL-PRO; Short=3CLp; AltName: Full=Main protease; Short=Mpro; AltName: Full=Non-structural protein 5; Short=nsp5; AltName: Full=SARS coronavirus main proteinase; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; Contains: RecName: Full=Viral protein genome-linked nsp9; AltName: Full=Non-structural protein 9; Short=nsp9; AltName: Full=RNA-capping enzyme subunit nsp9; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; Contains: RecName: Full=RNA-directed RNA polymerase nsp12; Short=Pol; Short=RdRp; AltName: Full=Non-structural protein 12; Short=nsp12; Contains: RecName: Full=Helicase nsp13; Short=Hel; AltName: Full=Non-structural protein 13; Short=nsp13; Contains: RecName: Full=Guanine-N7 methyltransferase nsp14; AltName: Full=Non-structural protein 14; Short=nsp14; AltName: Full=Proofreading exoribonuclease nsp14; Short=ExoN; Contains: RecName: Full=Uridylate-specific endoribonuclease nsp15; AltName: Full=NendoU; AltName: Full=Non-structural protein 15; Short=nsp15; Contains: RecName: Full=2'-O-methyltransferase nsp16; AltName: Full=Non-structural protein 16; Short=nsp16 [Severe acute respiratory syndrome-related coronavirus]
Sequence ID: P0C6X7.1 Length: 7073
Range 1: 3241 to 3546
Score:647 bits(1670), Expect:0.0,
Method:Compositional matrix adjust.,
Identities:304/306(99%), Positives:306/306(100%), Gaps:0/306(0%)
Query 1 SGFRKMAFPSGKVEGCMVQVTCGTTTLNGLWLDDTVYCPRHVVCTAEDMLNPNYDDLLIR 60
SGFRKMAFPSGKVEGCMVQVTCGTTTLNGLWLDDTVYCPRHV+CTAEDMLNPNY+DLLIR
Sbjct 3241 SGFRKMAFPSGKVEGCMVQVTCGTTTLNGLWLDDTVYCPRHVICTAEDMLNPNYEDLLIR 3300
Query 61 KSNHSFLVQAGNVQLRVIGHSMQNCLLRLKVDTSNPKTPKYKFVRIQPGQTFSVLACYNG 120
KSNHSFLVQAGNVQLRVIGHSMQNCLLRLKVDTSNPKTPKYKFVRIQPGQTFSVLACYNG
Sbjct 3301 KSNHSFLVQAGNVQLRVIGHSMQNCLLRLKVDTSNPKTPKYKFVRIQPGQTFSVLACYNG 3360
Query 121 SPSGVYQCAMRPNHTIKGSFLNGSCGSVGFNIDYDCVSFCYMHHMELPTGVHAGTDLEGK 180
SPSGVYQCAMRPNHTIKGSFLNGSCGSVGFNIDYDCVSFCYMHHMELPTGVHAGTDLEGK
Sbjct 3361 SPSGVYQCAMRPNHTIKGSFLNGSCGSVGFNIDYDCVSFCYMHHMELPTGVHAGTDLEGK 3420
Query 181 FYGPFVDRQTAQAAGTDTTITLNVLAWLYAAVINGDRWFLNRFTTTLNDFNLVAMKYNYE 240
FYGPFVDRQTAQAAGTDTTITLNVLAWLYAAVINGDRWFLNRFTTTLNDFNLVAMKYNYE
Sbjct 3421 FYGPFVDRQTAQAAGTDTTITLNVLAWLYAAVINGDRWFLNRFTTTLNDFNLVAMKYNYE 3480
Query 241 PLTQDHVDILGPLSAQTGIAVLDMCAALKELLQNGMNGRTILGSTILEDEFTPFDVVRQC 300
PLTQDHVDILGPLSAQTGIAVLDMCAALKELLQNGMNGRTILGSTILEDEFTPFDVVRQC
Sbjct 3481 PLTQDHVDILGPLSAQTGIAVLDMCAALKELLQNGMNGRTILGSTILEDEFTPFDVVRQC 3540
Query 301 SGVTFQ 306
SGVTFQ
Sbjct 3541 SGVTFQ 3546
>RecName: Full=Replicase polyprotein 1a; Short=pp1a; AltName: Full=ORF1a polyprotein; Contains: RecName: Full=Non-structural protein 1; Short=nsp1; AltName: Full=Leader protein; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p65 homolog; Contains: RecName: Full=Papain-like protease nsp3; Short=PL-PRO; AltName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=PL2-PRO; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; Contains: RecName: Full=3C-like proteinase nsp5; Short=3CL-PRO; Short=3CLp; AltName: Full=nsp5; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; Contains: RecName: Full=RNA-capping enzyme subunit nsp9; AltName: Full=Non-structural protein 9; Short=nsp9; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; Contains: RecName: Full=Non-structural protein 11; Short=nsp11 [Bat SARS CoV Rp3/2004]
Sequence ID: P0C6T7.1 Length: 4380
Range 1: 3239 to 3544
Score:647 bits(1669), Expect:0.0,
Method:Compositional matrix adjust.,
Identities:303/306(99%), Positives:305/306(99%), Gaps:0/306(0%)
Query 1 SGFRKMAFPSGKVEGCMVQVTCGTTTLNGLWLDDTVYCPRHVVCTAEDMLNPNYDDLLIR 60
SGFRKMAFPSGKVEGCMVQVTCGTTTLNGLWLDDTVYCPRHV+CTAEDMLNPNY+DLLIR
Sbjct 3239 SGFRKMAFPSGKVEGCMVQVTCGTTTLNGLWLDDTVYCPRHVICTAEDMLNPNYEDLLIR 3298
Query 61 KSNHSFLVQAGNVQLRVIGHSMQNCLLRLKVDTSNPKTPKYKFVRIQPGQTFSVLACYNG 120
KSNHSFLVQAGNVQLRVIGHSMQNCLLRLKVDTSNPKTPKYKFVRIQPGQTFSVLACYNG
Sbjct 3299 KSNHSFLVQAGNVQLRVIGHSMQNCLLRLKVDTSNPKTPKYKFVRIQPGQTFSVLACYNG 3358
Query 121 SPSGVYQCAMRPNHTIKGSFLNGSCGSVGFNIDYDCVSFCYMHHMELPTGVHAGTDLEGK 180
SPSGVYQCAMRPNHTIKGSFLNGSCGSVGFNIDYDCVSFCYMHHMELPT VHAGTDLEGK
Sbjct 3359 SPSGVYQCAMRPNHTIKGSFLNGSCGSVGFNIDYDCVSFCYMHHMELPTEVHAGTDLEGK 3418
Query 181 FYGPFVDRQTAQAAGTDTTITLNVLAWLYAAVINGDRWFLNRFTTTLNDFNLVAMKYNYE 240
FYGPFVDRQTAQAAGTDTTITLNVLAWLYAAVINGDRWFLNRFTTTLNDFNLVAMKYNYE
Sbjct 3419 FYGPFVDRQTAQAAGTDTTITLNVLAWLYAAVINGDRWFLNRFTTTLNDFNLVAMKYNYE 3478
Query 241 PLTQDHVDILGPLSAQTGIAVLDMCAALKELLQNGMNGRTILGSTILEDEFTPFDVVRQC 300
PLTQDHVDILGPLSAQTGIAVLDMCAALKELLQNGMNGRTILGSTILEDEFTPFDVVRQC
Sbjct 3479 PLTQDHVDILGPLSAQTGIAVLDMCAALKELLQNGMNGRTILGSTILEDEFTPFDVVRQC 3538
Query 301 SGVTFQ 306
SGVTFQ
Sbjct 3539 SGVTFQ 3544
>RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Host translation inhibitor nsp1; Short=nsp1; AltName: Full=Leader protein; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p65 homolog; Contains: RecName: Full=Papain-like proteinase nsp3; Short=PL-PRO; AltName: Full=Non-structural protein 3; Short=nsp3; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; Contains: RecName: Full=3C-like proteinase nsp5; Short=3CL-PRO; Short=3CLp; AltName: Full=nsp5; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; Contains: RecName: Full=Viral protein genome-linked nsp9; AltName: Full=Non-structural protein 9; Short=nsp9; AltName: Full=RNA-capping enzyme subunit nsp9; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; Contains: RecName: Full=RNA-directed RNA polymerase nsp12; Short=Pol; Short=RdRp; AltName: Full=nsp12; Contains: RecName: Full=Helicase nsp13; Short=Hel; AltName: Full=nsp13; Contains: RecName: Full=Guanine-N7 methyltransferase nsp14; Short=ExoN; AltName: Full=nsp14; Contains: RecName: Full=Uridylate-specific endoribonuclease nsp15; AltName: Full=NendoU; AltName: Full=nsp15; Contains: RecName: Full=2'-O-methyltransferase nsp16; AltName: Full=nsp16 [Bat CoV 279/2005]
Sequence ID: P0C6V9.1 Length: 7079
Range 1: 3247 to 3552
Score:646 bits(1666), Expect:0.0,
Method:Compositional matrix adjust.,
Identities:303/306(99%), Positives:306/306(100%), Gaps:0/306(0%)
Query 1 SGFRKMAFPSGKVEGCMVQVTCGTTTLNGLWLDDTVYCPRHVVCTAEDMLNPNYDDLLIR 60
SGFRKMAFPSGKVEGCMVQVTCGTTTLNGLWLDDTVYCPRHV+CTAEDMLNPNY+DLLIR
Sbjct 3247 SGFRKMAFPSGKVEGCMVQVTCGTTTLNGLWLDDTVYCPRHVICTAEDMLNPNYEDLLIR 3306
Query 61 KSNHSFLVQAGNVQLRVIGHSMQNCLLRLKVDTSNPKTPKYKFVRIQPGQTFSVLACYNG 120
KSNHSFLVQAGNVQLRVIGHSMQNCLLRLKVDTSNPKTPKYKFVRIQPGQTFSVLACYNG
Sbjct 3307 KSNHSFLVQAGNVQLRVIGHSMQNCLLRLKVDTSNPKTPKYKFVRIQPGQTFSVLACYNG 3366
Query 121 SPSGVYQCAMRPNHTIKGSFLNGSCGSVGFNIDYDCVSFCYMHHMELPTGVHAGTDLEGK 180
SPSGVYQCAMRPN+TIKGSFLNGSCGSVGFNIDYDCVSFCYMHHMELPTGVHAGTDLEGK
Sbjct 3367 SPSGVYQCAMRPNYTIKGSFLNGSCGSVGFNIDYDCVSFCYMHHMELPTGVHAGTDLEGK 3426
Query 181 FYGPFVDRQTAQAAGTDTTITLNVLAWLYAAVINGDRWFLNRFTTTLNDFNLVAMKYNYE 240
FYGPFVDRQTAQAAGTDTTITLNVLAWLYAAVINGDRWFLNRFTTTLNDFNLVAMKYNYE
Sbjct 3427 FYGPFVDRQTAQAAGTDTTITLNVLAWLYAAVINGDRWFLNRFTTTLNDFNLVAMKYNYE 3486
Query 241 PLTQDHVDILGPLSAQTGIAVLDMCAALKELLQNGMNGRTILGSTILEDEFTPFDVVRQC 300
PLTQDHVDILGPLSAQTGIAVLDMCAALKELLQNGMNGRTILGSTILEDEFTPFDVVRQC
Sbjct 3487 PLTQDHVDILGPLSAQTGIAVLDMCAALKELLQNGMNGRTILGSTILEDEFTPFDVVRQC 3546
Query 301 SGVTFQ 306
SGVTFQ
Sbjct 3547 SGVTFQ 3552
>RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Host translation inhibitor nsp1; Short=nsp1; AltName: Full=Leader protein; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p65 homolog; Contains: RecName: Full=Papain-like proteinase nsp3; Short=PL-PRO; AltName: Full=Non-structural protein 3; Short=nsp3; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; Contains: RecName: Full=3C-like proteinase nsp5; Short=3CL-PRO; Short=3CLp; AltName: Full=nsp5; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; Contains: RecName: Full=Viral protein genome-linked nsp9; AltName: Full=Non-structural protein 9; Short=nsp9; AltName: Full=RNA-capping enzyme subunit nsp9; AltName: Full=p12; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; Contains: RecName: Full=RNA-directed RNA polymerase nsp12; Short=Pol; Short=RdRp; AltName: Full=nsp12; Contains: RecName: Full=Helicase nsp13; Short=Hel; AltName: Full=nsp13; Contains: RecName: Full=Guanine-N7 methyltransferase nsp14; Short=ExoN; AltName: Full=nsp14; Contains: RecName: Full=Uridylate-specific endoribonuclease nsp15; AltName: Full=NendoU; AltName: Full=nsp15; Contains: RecName: Full=2'-O-methyltransferase nsp16; AltName: Full=nsp16 [Bat SARS CoV Rp3/2004]
Sequence ID: P0C6W6.1 Length: 7071
Range 1: 3239 to 3544
Score:645 bits(1663), Expect:0.0,
Method:Compositional matrix adjust.,
Identities:303/306(99%), Positives:305/306(99%), Gaps:0/306(0%)
Query 1 SGFRKMAFPSGKVEGCMVQVTCGTTTLNGLWLDDTVYCPRHVVCTAEDMLNPNYDDLLIR 60
SGFRKMAFPSGKVEGCMVQVTCGTTTLNGLWLDDTVYCPRHV+CTAEDMLNPNY+DLLIR
Sbjct 3239 SGFRKMAFPSGKVEGCMVQVTCGTTTLNGLWLDDTVYCPRHVICTAEDMLNPNYEDLLIR 3298
Query 61 KSNHSFLVQAGNVQLRVIGHSMQNCLLRLKVDTSNPKTPKYKFVRIQPGQTFSVLACYNG 120
KSNHSFLVQAGNVQLRVIGHSMQNCLLRLKVDTSNPKTPKYKFVRIQPGQTFSVLACYNG
Sbjct 3299 KSNHSFLVQAGNVQLRVIGHSMQNCLLRLKVDTSNPKTPKYKFVRIQPGQTFSVLACYNG 3358
Query 121 SPSGVYQCAMRPNHTIKGSFLNGSCGSVGFNIDYDCVSFCYMHHMELPTGVHAGTDLEGK 180
SPSGVYQCAMRPNHTIKGSFLNGSCGSVGFNIDYDCVSFCYMHHMELPT VHAGTDLEGK
Sbjct 3359 SPSGVYQCAMRPNHTIKGSFLNGSCGSVGFNIDYDCVSFCYMHHMELPTEVHAGTDLEGK 3418
Query 181 FYGPFVDRQTAQAAGTDTTITLNVLAWLYAAVINGDRWFLNRFTTTLNDFNLVAMKYNYE 240
FYGPFVDRQTAQAAGTDTTITLNVLAWLYAAVINGDRWFLNRFTTTLNDFNLVAMKYNYE
Sbjct 3419 FYGPFVDRQTAQAAGTDTTITLNVLAWLYAAVINGDRWFLNRFTTTLNDFNLVAMKYNYE 3478
Query 241 PLTQDHVDILGPLSAQTGIAVLDMCAALKELLQNGMNGRTILGSTILEDEFTPFDVVRQC 300
PLTQDHVDILGPLSAQTGIAVLDMCAALKELLQNGMNGRTILGSTILEDEFTPFDVVRQC
Sbjct 3479 PLTQDHVDILGPLSAQTGIAVLDMCAALKELLQNGMNGRTILGSTILEDEFTPFDVVRQC 3538
Query 301 SGVTFQ 306
SGVTFQ
Sbjct 3539 SGVTFQ 3544
>RecName: Full=Replicase polyprotein 1a; Short=pp1a; AltName: Full=ORF1a polyprotein; Contains: RecName: Full=Host translation inhibitor nsp1; AltName: Full=Leader protein; AltName: Full=Non-structural protein 1; Short=nsp1; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p65 homolog; Contains: RecName: Full=Papain-like protease nsp3; AltName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=PL2-PRO; AltName: Full=Papain-like proteinase; Short=PL-PRO; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; Contains: RecName: Full=3C-like proteinase nsp5; Short=3CL-PRO; Short=3CLp; AltName: Full=Main protease; Short=Mpro; AltName: Full=Non-structural protein 5; Short=nsp5; AltName: Full=SARS coronavirus main proteinase; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; Contains: RecName: Full=RNA-capping enzyme subunit nsp9; AltName: Full=Non-structural protein 9; Short=nsp9; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; Contains: RecName: Full=Non-structural protein 11; Short=nsp11 [Severe acute respiratory syndrome coronavirus 2]
Sequence ID: P0DTC1.1 Length: 4405
Range 1: 3264 to 3569
Score:632 bits(1629), Expect:0.0,
Method:Compositional matrix adjust.,
Identities:292/306(95%), Positives:302/306(98%), Gaps:0/306(0%)
Query 1 SGFRKMAFPSGKVEGCMVQVTCGTTTLNGLWLDDTVYCPRHVVCTAEDMLNPNYDDLLIR 60
SGFRKMAFPSGKVEGCMVQVTCGTTTLNGLWLDD VYCPRHV+CT+EDMLNPNY+DLLIR
Sbjct 3264 SGFRKMAFPSGKVEGCMVQVTCGTTTLNGLWLDDVVYCPRHVICTSEDMLNPNYEDLLIR 3323
Query 61 KSNHSFLVQAGNVQLRVIGHSMQNCLLRLKVDTSNPKTPKYKFVRIQPGQTFSVLACYNG 120
KSNH+FLVQAGNVQLRVIGHSMQNC+L+LKVDT+NPKTPKYKFVRIQPGQTFSVLACYNG
Sbjct 3324 KSNHNFLVQAGNVQLRVIGHSMQNCVLKLKVDTANPKTPKYKFVRIQPGQTFSVLACYNG 3383
Query 121 SPSGVYQCAMRPNHTIKGSFLNGSCGSVGFNIDYDCVSFCYMHHMELPTGVHAGTDLEGK 180
SPSGVYQCAMRPN TIKGSFLNGSCGSVGFNIDYDCVSFCYMHHMELPTGVHAGTDLEG
Sbjct 3384 SPSGVYQCAMRPNFTIKGSFLNGSCGSVGFNIDYDCVSFCYMHHMELPTGVHAGTDLEGN 3443
Query 181 FYGPFVDRQTAQAAGTDTTITLNVLAWLYAAVINGDRWFLNRFTTTLNDFNLVAMKYNYE 240
FYGPFVDRQTAQAAGTDTTIT+NVLAWLYAAVINGDRWFLNRFTTTLNDFNLVAMKYNYE
Sbjct 3444 FYGPFVDRQTAQAAGTDTTITVNVLAWLYAAVINGDRWFLNRFTTTLNDFNLVAMKYNYE 3503
Query 241 PLTQDHVDILGPLSAQTGIAVLDMCAALKELLQNGMNGRTILGSTILEDEFTPFDVVRQC 300
PLTQDHVDILGPLSAQTGIAVLDMCA+LKELLQNGMNGRTILGS +LEDEFTPFDVVRQC
Sbjct 3504 PLTQDHVDILGPLSAQTGIAVLDMCASLKELLQNGMNGRTILGSALLEDEFTPFDVVRQC 3563
Query 301 SGVTFQ 306
SGVTFQ
Sbjct 3564 SGVTFQ 3569
>RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Host translation inhibitor nsp1; AltName: Full=Leader protein; AltName: Full=Non-structural protein 1; Short=nsp1; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p65 homolog; Contains: RecName: Full=Papain-like protease nsp3; AltName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=PL2-PRO; AltName: Full=Papain-like proteinase; Short=PL-PRO; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; Contains: RecName: Full=3C-like proteinase nsp5; Short=3CL-PRO; Short=3CLp; AltName: Full=Main protease; Short=Mpro; AltName: Full=Non-structural protein 5; Short=nsp5; AltName: Full=SARS coronavirus main proteinase; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; Contains: RecName: Full=Viral protein genome-linked nsp9; AltName: Full=Non-structural protein 9; Short=nsp9; AltName: Full=RNA-capping enzyme subunit nsp9; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; Contains: RecName: Full=RNA-directed RNA polymerase nsp12; Short=Pol; Short=RdRp; AltName: Full=Non-structural protein 12; Short=nsp12; Contains: RecName: Full=Helicase nsp13; Short=Hel; AltName: Full=Non-structural protein 13; Short=nsp13; Contains: RecName: Full=Guanine-N7 methyltransferase nsp14; AltName: Full=Non-structural protein 14; Short=nsp14; AltName: Full=Proofreading exoribonuclease nsp14; Short=ExoN; Contains: RecName: Full=Uridylate-specific endoribonuclease nsp15; AltName: Full=NendoU; AltName: Full=Non-structural protein 15; Short=nsp15; Contains: RecName: Full=2'-O-methyltransferase nsp16; AltName: Full=Non-structural protein 16; Short=nsp16 [Severe acute respiratory syndrome coronavirus 2]
Sequence ID: P0DTD1.1 Length: 7096
Range 1: 3264 to 3569
Score:629 bits(1622), Expect:0.0,
Method:Compositional matrix adjust.,
Identities:292/306(95%), Positives:302/306(98%), Gaps:0/306(0%)
Query 1 SGFRKMAFPSGKVEGCMVQVTCGTTTLNGLWLDDTVYCPRHVVCTAEDMLNPNYDDLLIR 60
SGFRKMAFPSGKVEGCMVQVTCGTTTLNGLWLDD VYCPRHV+CT+EDMLNPNY+DLLIR
Sbjct 3264 SGFRKMAFPSGKVEGCMVQVTCGTTTLNGLWLDDVVYCPRHVICTSEDMLNPNYEDLLIR 3323
Query 61 KSNHSFLVQAGNVQLRVIGHSMQNCLLRLKVDTSNPKTPKYKFVRIQPGQTFSVLACYNG 120
KSNH+FLVQAGNVQLRVIGHSMQNC+L+LKVDT+NPKTPKYKFVRIQPGQTFSVLACYNG
Sbjct 3324 KSNHNFLVQAGNVQLRVIGHSMQNCVLKLKVDTANPKTPKYKFVRIQPGQTFSVLACYNG 3383
Query 121 SPSGVYQCAMRPNHTIKGSFLNGSCGSVGFNIDYDCVSFCYMHHMELPTGVHAGTDLEGK 180
SPSGVYQCAMRPN TIKGSFLNGSCGSVGFNIDYDCVSFCYMHHMELPTGVHAGTDLEG
Sbjct 3384 SPSGVYQCAMRPNFTIKGSFLNGSCGSVGFNIDYDCVSFCYMHHMELPTGVHAGTDLEGN 3443
Query 181 FYGPFVDRQTAQAAGTDTTITLNVLAWLYAAVINGDRWFLNRFTTTLNDFNLVAMKYNYE 240
FYGPFVDRQTAQAAGTDTTIT+NVLAWLYAAVINGDRWFLNRFTTTLNDFNLVAMKYNYE
Sbjct 3444 FYGPFVDRQTAQAAGTDTTITVNVLAWLYAAVINGDRWFLNRFTTTLNDFNLVAMKYNYE 3503
Query 241 PLTQDHVDILGPLSAQTGIAVLDMCAALKELLQNGMNGRTILGSTILEDEFTPFDVVRQC 300
PLTQDHVDILGPLSAQTGIAVLDMCA+LKELLQNGMNGRTILGS +LEDEFTPFDVVRQC
Sbjct 3504 PLTQDHVDILGPLSAQTGIAVLDMCASLKELLQNGMNGRTILGSALLEDEFTPFDVVRQC 3563
Query 301 SGVTFQ 306
SGVTFQ
Sbjct 3564 SGVTFQ 3569
>RecName: Full=Replicase polyprotein 1a; Short=pp1a; AltName: Full=ORF1a polyprotein; Contains: RecName: Full=Non-structural protein 1; Short=nsp1; AltName: Full=Leader protein; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p65 homolog; Contains: RecName: Full=Papain-like protease nsp3; Short=PL-PRO; AltName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=PL2-PRO; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; Contains: RecName: Full=3C-like proteinase nsp5; Short=3CL-PRO; Short=3CLp; AltName: Full=nsp5; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; Contains: RecName: Full=RNA-capping enzyme subunit nsp9; AltName: Full=Non-structural protein 9; Short=nsp9; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; Contains: RecName: Full=Non-structural protein 11; Short=nsp11 [Rousettus bat coronavirus HKU9]
Sequence ID: P0C6T6.1 Length: 4248
Range 1: 3104 to 3409
Score:341 bits(875), Expect:9e-106,
Method:Compositional matrix adjust.,
Identities:159/306(52%), Positives:214/306(69%), Gaps:0/306(0%)
Query 1 SGFRKMAFPSGKVEGCMVQVTCGTTTLNGLWLDDTVYCPRHVVCTAEDMLNPNYDDLLIR 60
+G +MA PSG VE C+V+V G+ TLNG+WLD+ V CPRHV+C+ +++ NP+Y L +R
Sbjct 3104 AGLTRMAHPSGLVEPCLVKVNYGSMTLNGIWLDNFVICPRHVMCSRDELANPDYPRLSMR 3163
Query 61 KSNHSFLVQAGNVQLRVIGHSMQNCLLRLKVDTSNPKTPKYKFVRIQPGQTFSVLACYNG 120
+N+ F V +RVIGH+M+ LL+L VD +NPKTP Y F+R+ GQ S+LACY+G
Sbjct 3164 AANYDFHVSQNGHNIRVIGHTMEGSLLKLTVDVNNPKTPAYSFIRVSTGQAMSLLACYDG 3223
Query 121 SPSGVYQCAMRPNHTIKGSFLNGSCGSVGFNIDYDCVSFCYMHHMELPTGVHAGTDLEGK 180
P+GVY C +R N T++ SFL GSCGS GF ++ V FCY+H +ELP G H GTD G
Sbjct 3224 LPTGVYTCTLRSNGTMRASFLCGSCGSPGFVMNGKEVQFCYLHQLELPNGTHTGTDFSGV 3283
Query 181 FYGPFVDRQTAQAAGTDTTITLNVLAWLYAAVINGDRWFLNRFTTTLNDFNLVAMKYNYE 240
FYGPF D+Q Q A D TIT+NVLAWLYAAV++G+ WFL + + + +FN A+KY +
Sbjct 3284 FYGPFEDKQVPQLAAPDCTITVNVLAWLYAAVLSGENWFLTKSSISPAEFNNCAVKYMCQ 3343
Query 241 PLTQDHVDILGPLSAQTGIAVLDMCAALKELLQNGMNGRTILGSTILEDEFTPFDVVRQC 300
+T + + +L PL+A+TGI+V M +ALK LL G GRTI+GS LEDE TP+D+ RQ
Sbjct 3344 SVTSESLQVLQPLAAKTGISVERMLSALKVLLSAGFCGRTIMGSCSLEDEHTPYDIGRQM 3403
Query 301 SGVTFQ 306
GV Q
Sbjct 3404 LGVKLQ 3409
>RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Host translation inhibitor nsp1; Short=nsp1; AltName: Full=Leader protein; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p65 homolog; Contains: RecName: Full=Papain-like proteinase nsp3; Short=PL-PRO; AltName: Full=Non-structural protein 3; Short=nsp3; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; Contains: RecName: Full=3C-like proteinase nsp5; Short=3CL-PRO; Short=3CLp; AltName: Full=nsp5; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; Contains: RecName: Full=Viral protein genome-linked nsp9; AltName: Full=Non-structural protein 9; Short=nsp9; AltName: Full=RNA-capping enzyme subunit nsp9; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; Contains: RecName: Full=RNA-directed RNA polymerase nsp12; Short=Pol; Short=RdRp; AltName: Full=nsp12; Contains: RecName: Full=Helicase nsp13; Short=Hel; AltName: Full=nsp13; Contains: RecName: Full=Guanine-N7 methyltransferase nsp14; Short=ExoN; AltName: Full=nsp14; Contains: RecName: Full=Uridylate-specific endoribonuclease nsp15; AltName: Full=NendoU; AltName: Full=nsp15; Contains: RecName: Full=2'-O-methyltransferase nsp16; AltName: Full=nsp16 [Rousettus bat coronavirus HKU9]
Sequence ID: P0C6W5.1 Length: 6930
Range 1: 3104 to 3409
Score:340 bits(873), Expect:2e-105,
Method:Compositional matrix adjust.,
Identities:159/306(52%), Positives:214/306(69%), Gaps:0/306(0%)
Query 1 SGFRKMAFPSGKVEGCMVQVTCGTTTLNGLWLDDTVYCPRHVVCTAEDMLNPNYDDLLIR 60
+G +MA PSG VE C+V+V G+ TLNG+WLD+ V CPRHV+C+ +++ NP+Y L +R
Sbjct 3104 AGLTRMAHPSGLVEPCLVKVNYGSMTLNGIWLDNFVICPRHVMCSRDELANPDYPRLSMR 3163
Query 61 KSNHSFLVQAGNVQLRVIGHSMQNCLLRLKVDTSNPKTPKYKFVRIQPGQTFSVLACYNG 120
+N+ F V +RVIGH+M+ LL+L VD +NPKTP Y F+R+ GQ S+LACY+G
Sbjct 3164 AANYDFHVSQNGHNIRVIGHTMEGSLLKLTVDVNNPKTPAYSFIRVSTGQAMSLLACYDG 3223
Query 121 SPSGVYQCAMRPNHTIKGSFLNGSCGSVGFNIDYDCVSFCYMHHMELPTGVHAGTDLEGK 180
P+GVY C +R N T++ SFL GSCGS GF ++ V FCY+H +ELP G H GTD G
Sbjct 3224 LPTGVYTCTLRSNGTMRASFLCGSCGSPGFVMNGKEVQFCYLHQLELPNGTHTGTDFSGV 3283
Query 181 FYGPFVDRQTAQAAGTDTTITLNVLAWLYAAVINGDRWFLNRFTTTLNDFNLVAMKYNYE 240
FYGPF D+Q Q A D TIT+NVLAWLYAAV++G+ WFL + + + +FN A+KY +
Sbjct 3284 FYGPFEDKQVPQLAAPDCTITVNVLAWLYAAVLSGENWFLTKSSISPAEFNNCAVKYMCQ 3343
Query 241 PLTQDHVDILGPLSAQTGIAVLDMCAALKELLQNGMNGRTILGSTILEDEFTPFDVVRQC 300
+T + + +L PL+A+TGI+V M +ALK LL G GRTI+GS LEDE TP+D+ RQ
Sbjct 3344 SVTSESLQVLQPLAAKTGISVERMLSALKVLLSAGFCGRTIMGSCSLEDEHTPYDIGRQM 3403
Query 301 SGVTFQ 306
GV Q
Sbjct 3404 LGVKLQ 3409
>RecName: Full=Replicase polyprotein 1a; Short=pp1a; AltName: Full=ORF1a polyprotein; Contains: RecName: Full=Host translation inhibitor nsp1; Short=nsp1; AltName: Full=Leader protein; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p65 homolog; Contains: RecName: Full=Papain-like protease nsp3; Short=PL-PRO; AltName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=PL2-PRO; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; Contains: RecName: Full=3C-like proteinase nsp5; Short=3CL-PRO; Short=3CLp; AltName: Full=nsp5; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; Contains: RecName: Full=RNA-capping enzyme subunit nsp9; AltName: Full=Non-structural protein 9; Short=nsp9; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; Contains: RecName: Full=Non-structural protein 11; Short=nsp11 [Betacoronavirus England 1]
Sequence ID: K9N638.1 Length: 4391
Range 1: 3248 to 3553
Score:327 bits(839), Expect:6e-101,
Method:Compositional matrix adjust.,
Identities:161/310(52%), Positives:209/310(67%), Gaps:8/310(2%)
Query 1 SGFRKMAFPSGKVEGCMVQVTCGTTTLNGLWLDDTVYCPRHVVCTAEDMLNPNYDDLLIR 60
SG KM+ PSG VE CMVQVTCG+ TLNGLWLD+TV+CPRHV+C A+ + +PNYD LLI
Sbjct 3248 SGLVKMSHPSGDVEACMVQVTCGSMTLNGLWLDNTVWCPRHVMCPADQLSDPNYDALLIS 3307
Query 61 KSNHSFLVQ---AGNVQLRVIGHSMQNCLLRLKVDTSNPKTPKYKFVRIQPGQTFSVLAC 117
+NHSF VQ LRV+GH+MQ LL+L VD +NP TP Y F ++PG FSVLAC
Sbjct 3308 MTNHSFSVQKHIGAPANLRVVGHAMQGTLLKLTVDVANPSTPAYTFTTVKPGAAFSVLAC 3367
Query 118 YNGSPSGVYQCAMRPNHTIKGSFLNGSCGSVGFNIDYDCVSFCYMHHMELPTGVHAGTDL 177
YNG P+G + MRPN+TIKGSFL GSCGSVG+ + ++FCYMH MEL G H G+
Sbjct 3368 YNGRPTGTFTVVMRPNYTIKGSFLCGSCGSVGYTKEGSVINFCYMHQMELANGTHTGSAF 3427
Query 178 EGKFYGPFVDRQTAQAAGTDTTITLNVLAWLYAAVINGDRWFLNRFTTTLNDFNLVAMKY 237
+G YG F+D+Q Q TD ++NV+AWLYAA++NG WF+ T++ FN A+
Sbjct 3428 DGTMYGAFMDKQVHQVQLTDKYCSVNVVAWLYAAILNGCAWFVKPNRTSVVSFNEWALAN 3487
Query 238 NY-EPLTQDHVDILGPLSAQTGIAVLDMCAALKELLQNGMNGRTILGSTILEDEFTPFDV 296
+ E + VD+ L+ +TG+A+ + A+++L G G+ ILGST+LEDEFTP DV
Sbjct 3488 QFTEFVGTQSVDM---LAVKTGVAIEQLLYAIQQLY-TGFQGKQILGSTMLEDEFTPEDV 3543
Query 297 VRQCSGVTFQ 306
Q GV Q
Sbjct 3544 NMQIMGVVMQ 3553
>RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Host translation inhibitor nsp1; Short=nsp1; AltName: Full=Leader protein; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p65 homolog; Contains: RecName: Full=Papain-like proteinase nsp3; Short=PL-PRO; AltName: Full=Non-structural protein 3; Short=nsp3; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; Contains: RecName: Full=3C-like proteinase nsp5; Short=3CL-PRO; Short=3CLp; AltName: Full=nsp5; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; Contains: RecName: Full=Viral protein genome-linked nsp9; AltName: Full=Non-structural protein 9; Short=nsp9; AltName: Full=RNA-capping enzyme subunit nsp9; AltName: Full=p12; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; Contains: RecName: Full=RNA-directed RNA polymerase nsp12; Short=Pol; Short=RdRp; AltName: Full=nsp12; Contains: RecName: Full=Helicase nsp13; Short=Hel; AltName: Full=nsp13; Contains: RecName: Full=Guanine-N7 methyltransferase nsp14; Short=ExoN; AltName: Full=nsp14; Contains: RecName: Full=Uridylate-specific endoribonuclease nsp15; AltName: Full=NendoU; AltName: Full=nsp15; Contains: RecName: Full=2'-O-methyltransferase nsp16; AltName: Full=nsp16 [Betacoronavirus England 1]
Sequence ID: K9N7C7.1 Length: 7078
Range 1: 3248 to 3553
Score:327 bits(838), Expect:1e-100,
Method:Compositional matrix adjust.,
Identities:161/310(52%), Positives:209/310(67%), Gaps:8/310(2%)
Query 1 SGFRKMAFPSGKVEGCMVQVTCGTTTLNGLWLDDTVYCPRHVVCTAEDMLNPNYDDLLIR 60
SG KM+ PSG VE CMVQVTCG+ TLNGLWLD+TV+CPRHV+C A+ + +PNYD LLI
Sbjct 3248 SGLVKMSHPSGDVEACMVQVTCGSMTLNGLWLDNTVWCPRHVMCPADQLSDPNYDALLIS 3307
Query 61 KSNHSFLVQ---AGNVQLRVIGHSMQNCLLRLKVDTSNPKTPKYKFVRIQPGQTFSVLAC 117
+NHSF VQ LRV+GH+MQ LL+L VD +NP TP Y F ++PG FSVLAC
Sbjct 3308 MTNHSFSVQKHIGAPANLRVVGHAMQGTLLKLTVDVANPSTPAYTFTTVKPGAAFSVLAC 3367
Query 118 YNGSPSGVYQCAMRPNHTIKGSFLNGSCGSVGFNIDYDCVSFCYMHHMELPTGVHAGTDL 177
YNG P+G + MRPN+TIKGSFL GSCGSVG+ + ++FCYMH MEL G H G+
Sbjct 3368 YNGRPTGTFTVVMRPNYTIKGSFLCGSCGSVGYTKEGSVINFCYMHQMELANGTHTGSAF 3427
Query 178 EGKFYGPFVDRQTAQAAGTDTTITLNVLAWLYAAVINGDRWFLNRFTTTLNDFNLVAMKY 237
+G YG F+D+Q Q TD ++NV+AWLYAA++NG WF+ T++ FN A+
Sbjct 3428 DGTMYGAFMDKQVHQVQLTDKYCSVNVVAWLYAAILNGCAWFVKPNRTSVVSFNEWALAN 3487
Query 238 NY-EPLTQDHVDILGPLSAQTGIAVLDMCAALKELLQNGMNGRTILGSTILEDEFTPFDV 296
+ E + VD+ L+ +TG+A+ + A+++L G G+ ILGST+LEDEFTP DV
Sbjct 3488 QFTEFVGTQSVDM---LAVKTGVAIEQLLYAIQQLY-TGFQGKQILGSTMLEDEFTPEDV 3543
Query 297 VRQCSGVTFQ 306
Q GV Q
Sbjct 3544 NMQIMGVVMQ 3553
>RecName: Full=Replicase polyprotein 1a; Short=pp1a; AltName: Full=ORF1a polyprotein; Contains: RecName: Full=Non-structural protein 1; Short=nsp1; AltName: Full=Leader protein; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p65 homolog; Contains: RecName: Full=Papain-like protease nsp3; Short=PL-PRO; AltName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=PL2-PRO; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; Contains: RecName: Full=3C-like proteinase nsp5; Short=3CL-PRO; Short=3CLp; AltName: Full=nsp5; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; Contains: RecName: Full=RNA-capping enzyme subunit nsp9; AltName: Full=Non-structural protein 9; Short=nsp9; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; Contains: RecName: Full=Non-structural protein 11; Short=nsp11 [Pipistrellus bat coronavirus HKU5]
Sequence ID: P0C6T5.1 Length: 4481
Range 1: 3339 to 3644
Score:317 bits(811), Expect:4e-97,
Method:Compositional matrix adjust.,
Identities:158/310(51%), Positives:208/310(67%), Gaps:8/310(2%)
Query 1 SGFRKMAFPSGKVEGCMVQVTCGTTTLNGLWLDDTVYCPRHVVCTAEDMLNPNYDDLLIR 60
SG KMA PSG VE CMVQVTCG+ TLNGLWLD+ V+CPRHV+C A+ + +PNYD LL+
Sbjct 3339 SGLVKMAAPSGVVENCMVQVTCGSMTLNGLWLDNYVWCPRHVMCPADQLSDPNYDALLVS 3398
Query 61 KSNHSFLVQ---AGNVQLRVIGHSMQNCLLRLKVDTSNPKTPKYKFVRIQPGQTFSVLAC 117
K+N SF+VQ LRV+GH+M LL+L V+++NP+TP Y F ++PG +FSVLAC
Sbjct 3399 KTNLSFIVQKNVGAPANLRVVGHTMVGTLLKLTVESANPQTPAYTFTTVKPGASFSVLAC 3458
Query 118 YNGSPSGVYQCAMRPNHTIKGSFLNGSCGSVGFNIDYDCVSFCYMHHMELPTGVHAGTDL 177
YNG P+GV+ MR N TIKGSFL GSCGSVG+ + + ++FCYMH MEL G H G
Sbjct 3459 YNGRPTGVFMVNMRQNSTIKGSFLCGSCGSVGYTQEGNVINFCYMHQMELSNGTHTGCAF 3518
Query 178 EGKFYGPFVDRQTAQAAGTDTTITLNVLAWLYAAVINGDRWFLNRFTTTLNDFNLVAMKY 237
+G YG F DRQ Q +D T+N++AWLYAA++NG WF+ T + FN AM
Sbjct 3519 DGVMYGAFEDRQVHQVQLSDKYCTINIVAWLYAAILNGCNWFVKPNKTGIATFNEWAMSN 3578
Query 238 NY-EPLTQDHVDILGPLSAQTGIAVLDMCAALKELLQNGMNGRTILGSTILEDEFTPFDV 296
+ E + VD+ L+ +TG++V + A+ + L G G+TILG+++LEDEFTP DV
Sbjct 3579 QFTEFIGTQSVDM---LAHKTGVSVEQLLYAI-QTLHKGFQGKTILGNSMLEDEFTPDDV 3634
Query 297 VRQCSGVTFQ 306
Q GV Q
Sbjct 3635 NMQVMGVVMQ 3644
>RecName: Full=Replicase polyprotein 1a; Short=pp1a; AltName: Full=ORF1a polyprotein; Contains: RecName: Full=Non-structural protein 1; Short=nsp1; AltName: Full=Leader protein; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p65 homolog; Contains: RecName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=PL2-PRO; AltName: Full=Papain-like proteinase; Short=PL-PRO; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; Contains: RecName: Full=3C-like proteinase nsp5; Short=3CL-PRO; Short=3CLp; AltName: Full=nsp5; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; Contains: RecName: Full=RNA-capping enzyme subunit nsp9; AltName: Full=Non-structural protein 9; Short=nsp9; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; Contains: RecName: Full=Non-structural protein 11; Short=nsp11 [Tylonycteris bat coronavirus HKU4]
Sequence ID: P0C6T4.1 Length: 4434
Range 1: 3292 to 3597
Score:316 bits(809), Expect:6e-97,
Method:Compositional matrix adjust.,
Identities:158/310(51%), Positives:206/310(66%), Gaps:8/310(2%)
Query 1 SGFRKMAFPSGKVEGCMVQVTCGTTTLNGLWLDDTVYCPRHVVCTAEDMLNPNYDDLLIR 60
SG KM+ PSG VE C+VQVTCG+ TLNGLWLD+TV+CPRH++C A+ + +PNYD LLI
Sbjct 3292 SGLVKMSAPSGAVENCIVQVTCGSMTLNGLWLDNTVWCPRHIMCPADQLTDPNYDALLIS 3351
Query 61 KSNHSFLVQ---AGNVQLRVIGHSMQNCLLRLKVDTSNPKTPKYKFVRIQPGQTFSVLAC 117
K+NHSF+VQ LRV+ HSM LL+L VD +NP TP Y F ++PG +FSVLAC
Sbjct 3352 KTNHSFIVQKHIGAQANLRVVAHSMVGVLLKLTVDVANPSTPAYTFSTVKPGASFSVLAC 3411
Query 118 YNGSPSGVYQCAMRPNHTIKGSFLNGSCGSVGFNIDYDCVSFCYMHHMELPTGVHAGTDL 177
YNG P+GV+ +R N TIKGSFL GSCGSVG+ + ++F YMH MEL G H G+
Sbjct 3412 YNGKPTGVFTVNLRHNSTIKGSFLCGSCGSVGYTENGGVINFVYMHQMELSNGTHTGSSF 3471
Query 178 EGKFYGPFVDRQTAQAAGTDTTITLNVLAWLYAAVINGDRWFLNRFTTTLNDFNLVAMKY 237
+G YG F D+QT Q TD T+NV+AWLYAAV+NG +WF+ + +N A+
Sbjct 3472 DGVMYGAFEDKQTHQLQLTDKYCTINVVAWLYAAVLNGCKWFVKPTRVGIVTYNEWALSN 3531
Query 238 NY-EPLTQDHVDILGPLSAQTGIAVLDMCAALKELLQNGMNGRTILGSTILEDEFTPFDV 296
+ E + +D+ L+ +TG++V M AA++ L G G+TILG + LEDEFTP DV
Sbjct 3532 QFTEFVGTQSIDM---LAHRTGVSVEQMLAAIQS-LHAGFQGKTILGQSTLEDEFTPDDV 3587
Query 297 VRQCSGVTFQ 306
Q GV Q
Sbjct 3588 NMQVMGVVMQ 3597
>RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Host translation inhibitor nsp1; Short=nsp1; AltName: Full=Leader protein; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p65 homolog; Contains: RecName: Full=Papain-like proteinase nsp3; Short=PL-PRO; AltName: Full=Non-structural protein 3; Short=nsp3; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; Contains: RecName: Full=3C-like proteinase nsp5; Short=3CL-PRO; Short=3CLp; AltName: Full=nsp5; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; Contains: RecName: Full=Viral protein genome-linked nsp9; AltName: Full=Non-structural protein 9; Short=nsp9; AltName: Full=RNA-capping enzyme subunit nsp9; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; Contains: RecName: Full=RNA-directed RNA polymerase nsp12; Short=Pol; Short=RdRp; AltName: Full=nsp12; Contains: RecName: Full=Helicase nsp13; Short=Hel; AltName: Full=nsp13; Contains: RecName: Full=Guanine-N7 methyltransferase nsp14; Short=ExoN; AltName: Full=nsp14; Contains: RecName: Full=Uridylate-specific endoribonuclease nsp15; AltName: Full=NendoU; AltName: Full=nsp15; Contains: RecName: Full=2'-O-methyltransferase nsp16; AltName: Full=nsp16 [Pipistrellus bat coronavirus HKU5]
Sequence ID: P0C6W4.1 Length: 7182
Range 1: 3339 to 3644
Score:315 bits(808), Expect:1e-96,
Method:Compositional matrix adjust.,
Identities:158/310(51%), Positives:208/310(67%), Gaps:8/310(2%)
Query 1 SGFRKMAFPSGKVEGCMVQVTCGTTTLNGLWLDDTVYCPRHVVCTAEDMLNPNYDDLLIR 60
SG KMA PSG VE CMVQVTCG+ TLNGLWLD+ V+CPRHV+C A+ + +PNYD LL+
Sbjct 3339 SGLVKMAAPSGVVENCMVQVTCGSMTLNGLWLDNYVWCPRHVMCPADQLSDPNYDALLVS 3398
Query 61 KSNHSFLVQ---AGNVQLRVIGHSMQNCLLRLKVDTSNPKTPKYKFVRIQPGQTFSVLAC 117
K+N SF+VQ LRV+GH+M LL+L V+++NP+TP Y F ++PG +FSVLAC
Sbjct 3399 KTNLSFIVQKNVGAPANLRVVGHTMVGTLLKLTVESANPQTPAYTFTTVKPGASFSVLAC 3458
Query 118 YNGSPSGVYQCAMRPNHTIKGSFLNGSCGSVGFNIDYDCVSFCYMHHMELPTGVHAGTDL 177
YNG P+GV+ MR N TIKGSFL GSCGSVG+ + + ++FCYMH MEL G H G
Sbjct 3459 YNGRPTGVFMVNMRQNSTIKGSFLCGSCGSVGYTQEGNVINFCYMHQMELSNGTHTGCAF 3518
Query 178 EGKFYGPFVDRQTAQAAGTDTTITLNVLAWLYAAVINGDRWFLNRFTTTLNDFNLVAMKY 237
+G YG F DRQ Q +D T+N++AWLYAA++NG WF+ T + FN AM
Sbjct 3519 DGVMYGAFEDRQVHQVQLSDKYCTINIVAWLYAAILNGCNWFVKPNKTGIATFNEWAMSN 3578
Query 238 NY-EPLTQDHVDILGPLSAQTGIAVLDMCAALKELLQNGMNGRTILGSTILEDEFTPFDV 296
+ E + VD+ L+ +TG++V + A+ + L G G+TILG+++LEDEFTP DV
Sbjct 3579 QFTEFIGTQSVDM---LAHKTGVSVEQLLYAI-QTLHKGFQGKTILGNSMLEDEFTPDDV 3634
Query 297 VRQCSGVTFQ 306
Q GV Q
Sbjct 3635 NMQVMGVVMQ 3644
>RecName: Full=Replicase polyprotein 1a; Short=pp1a; AltName: Full=ORF1a polyprotein; Contains: RecName: Full=Non-structural protein 1; Short=nsp1; AltName: Full=Leader protein; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p65 homolog; Contains: RecName: Full=Papain-like protease nsp3; Short=PL-PRO; AltName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=PL2-PRO; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; Contains: RecName: Full=3C-like proteinase nsp5; Short=3CL-PRO; Short=3CLp; AltName: Full=nsp5; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; Contains: RecName: Full=RNA-capping enzyme subunit nsp9; AltName: Full=Non-structural protein 9; Short=nsp9; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; Contains: RecName: Full=Non-structural protein 11; Short=nsp11 [Bat coronavirus (BtCoV/133/2005)]
Sequence ID: P0C6F7.1 Length: 4441
Range 1: 3299 to 3604
Score:315 bits(807), Expect:1e-96,
Method:Compositional matrix adjust.,
Identities:158/310(51%), Positives:206/310(66%), Gaps:8/310(2%)
Query 1 SGFRKMAFPSGKVEGCMVQVTCGTTTLNGLWLDDTVYCPRHVVCTAEDMLNPNYDDLLIR 60
SG KM+ PSG VE C+VQVTCG+ TLNGLWLD+TV+CPRH++C A+ + +PNYD LLI
Sbjct 3299 SGLVKMSAPSGAVENCIVQVTCGSMTLNGLWLDNTVWCPRHIMCPADQLTDPNYDALLIS 3358
Query 61 KSNHSFLVQ---AGNVQLRVIGHSMQNCLLRLKVDTSNPKTPKYKFVRIQPGQTFSVLAC 117
K+NHSF+VQ LRV+ HSM LL+L VD +NP TP Y F ++PG +FSVLAC
Sbjct 3359 KTNHSFIVQKHIGAQANLRVVAHSMVGVLLKLTVDVANPSTPAYTFSTVKPGASFSVLAC 3418
Query 118 YNGSPSGVYQCAMRPNHTIKGSFLNGSCGSVGFNIDYDCVSFCYMHHMELPTGVHAGTDL 177
YNG P+GV+ +R N TIKGSFL GSCGSVG+ + ++F YMH MEL G H G+
Sbjct 3419 YNGKPTGVFTVNLRHNSTIKGSFLCGSCGSVGYTENGGVLNFVYMHQMELSNGTHTGSSF 3478
Query 178 EGKFYGPFVDRQTAQAAGTDTTITLNVLAWLYAAVINGDRWFLNRFTTTLNDFNLVAMKY 237
+G YG F D+QT Q TD T+NV+AWLYAAV+NG +WF+ + +N A+
Sbjct 3479 DGVMYGAFEDKQTHQLQLTDKYCTINVVAWLYAAVLNGCKWFVKPTRVGIVTYNEWALSN 3538
Query 238 NY-EPLTQDHVDILGPLSAQTGIAVLDMCAALKELLQNGMNGRTILGSTILEDEFTPFDV 296
+ E + +D+ L+ +TG++V M AA++ L G G+TILG + LEDEFTP DV
Sbjct 3539 QFTEFVGTQSIDM---LAHRTGVSVEQMLAAIQS-LHAGFQGKTILGQSTLEDEFTPDDV 3594
Query 297 VRQCSGVTFQ 306
Q GV Q
Sbjct 3595 NMQVMGVVMQ 3604
>RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Host translation inhibitor nsp1; Short=nsp1; AltName: Full=Leader protein; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p65 homolog; Contains: RecName: Full=Papain-like proteinase nsp3; Short=PL-PRO; AltName: Full=Non-structural protein 3; Short=nsp3; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; Contains: RecName: Full=3C-like proteinase nsp5; Short=3CL-PRO; Short=3CLp; AltName: Full=nsp5; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; Contains: RecName: Full=Viral protein genome-linked nsp9; AltName: Full=Non-structural protein 9; Short=nsp9; AltName: Full=RNA-capping enzyme subunit nsp9; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; Contains: RecName: Full=RNA-directed RNA polymerase nsp12; Short=Pol; Short=RdRp; Contains: RecName: Full=Helicase nsp13; Short=Hel; AltName: Full=nsp13; Contains: RecName: Full=Guanine-N7 methyltransferase nsp14; Short=ExoN; AltName: Full=nsp14; Contains: RecName: Full=Uridylate-specific endoribonuclease nsp15; AltName: Full=NendoU; AltName: Full=nsp15; Contains: RecName: Full=2'-O-methyltransferase nsp16; AltName: Full=nsp16 [Tylonycteris bat coronavirus HKU4]
Sequence ID: P0C6W3.1 Length: 7119
Range 1: 3292 to 3597
Score:315 bits(806), Expect:2e-96,
Method:Compositional matrix adjust.,
Identities:158/310(51%), Positives:206/310(66%), Gaps:8/310(2%)
Query 1 SGFRKMAFPSGKVEGCMVQVTCGTTTLNGLWLDDTVYCPRHVVCTAEDMLNPNYDDLLIR 60
SG KM+ PSG VE C+VQVTCG+ TLNGLWLD+TV+CPRH++C A+ + +PNYD LLI
Sbjct 3292 SGLVKMSAPSGAVENCIVQVTCGSMTLNGLWLDNTVWCPRHIMCPADQLTDPNYDALLIS 3351
Query 61 KSNHSFLVQ---AGNVQLRVIGHSMQNCLLRLKVDTSNPKTPKYKFVRIQPGQTFSVLAC 117
K+NHSF+VQ LRV+ HSM LL+L VD +NP TP Y F ++PG +FSVLAC
Sbjct 3352 KTNHSFIVQKHIGAQANLRVVAHSMVGVLLKLTVDVANPSTPAYTFSTVKPGASFSVLAC 3411
Query 118 YNGSPSGVYQCAMRPNHTIKGSFLNGSCGSVGFNIDYDCVSFCYMHHMELPTGVHAGTDL 177
YNG P+GV+ +R N TIKGSFL GSCGSVG+ + ++F YMH MEL G H G+
Sbjct 3412 YNGKPTGVFTVNLRHNSTIKGSFLCGSCGSVGYTENGGVINFVYMHQMELSNGTHTGSSF 3471
Query 178 EGKFYGPFVDRQTAQAAGTDTTITLNVLAWLYAAVINGDRWFLNRFTTTLNDFNLVAMKY 237
+G YG F D+QT Q TD T+NV+AWLYAAV+NG +WF+ + +N A+
Sbjct 3472 DGVMYGAFEDKQTHQLQLTDKYCTINVVAWLYAAVLNGCKWFVKPTRVGIVTYNEWALSN 3531
Query 238 NY-EPLTQDHVDILGPLSAQTGIAVLDMCAALKELLQNGMNGRTILGSTILEDEFTPFDV 296
+ E + +D+ L+ +TG++V M AA++ L G G+TILG + LEDEFTP DV
Sbjct 3532 QFTEFVGTQSIDM---LAHRTGVSVEQMLAAIQS-LHAGFQGKTILGQSTLEDEFTPDDV 3587
Query 297 VRQCSGVTFQ 306
Q GV Q
Sbjct 3588 NMQVMGVVMQ 3597
>RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Host translation inhibitor nsp1; Short=nsp1; AltName: Full=Leader protein; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p65 homolog; Contains: RecName: Full=Papain-like proteinase nsp3; Short=PL-PRO; AltName: Full=Non-structural protein 3; Short=nsp3; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; Contains: RecName: Full=3C-like proteinase nsp5; Short=3CL-PRO; Short=3CLp; AltName: Full=nsp5; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; Contains: RecName: Full=Viral protein genome-linked nsp9; AltName: Full=Non-structural protein 9; Short=nsp9; AltName: Full=RNA-capping enzyme subunit nsp9; AltName: Full=p12; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; Contains: RecName: Full=RNA-directed RNA polymerase nsp12; Short=Pol; Short=RdRp; AltName: Full=nsp12; Contains: RecName: Full=Helicase nsp13; Short=Hel; AltName: Full=nsp13; Contains: RecName: Full=Guanine-N7 methyltransferase nsp14; Short=ExoN; AltName: Full=nsp14; Contains: RecName: Full=Uridylate-specific endoribonuclease nsp15; AltName: Full=NendoU; AltName: Full=nsp15; Contains: RecName: Full=2'-O-methyltransferase nsp16; AltName: Full=nsp16 [Bat coronavirus (BtCoV/133/2005)]
Sequence ID: P0C6W1.1 Length: 7126
Range 1: 3299 to 3604
Score:314 bits(805), Expect:3e-96,
Method:Compositional matrix adjust.,
Identities:158/310(51%), Positives:206/310(66%), Gaps:8/310(2%)
Query 1 SGFRKMAFPSGKVEGCMVQVTCGTTTLNGLWLDDTVYCPRHVVCTAEDMLNPNYDDLLIR 60
SG KM+ PSG VE C+VQVTCG+ TLNGLWLD+TV+CPRH++C A+ + +PNYD LLI
Sbjct 3299 SGLVKMSAPSGAVENCIVQVTCGSMTLNGLWLDNTVWCPRHIMCPADQLTDPNYDALLIS 3358
Query 61 KSNHSFLVQ---AGNVQLRVIGHSMQNCLLRLKVDTSNPKTPKYKFVRIQPGQTFSVLAC 117
K+NHSF+VQ LRV+ HSM LL+L VD +NP TP Y F ++PG +FSVLAC
Sbjct 3359 KTNHSFIVQKHIGAQANLRVVAHSMVGVLLKLTVDVANPSTPAYTFSTVKPGASFSVLAC 3418
Query 118 YNGSPSGVYQCAMRPNHTIKGSFLNGSCGSVGFNIDYDCVSFCYMHHMELPTGVHAGTDL 177
YNG P+GV+ +R N TIKGSFL GSCGSVG+ + ++F YMH MEL G H G+
Sbjct 3419 YNGKPTGVFTVNLRHNSTIKGSFLCGSCGSVGYTENGGVLNFVYMHQMELSNGTHTGSSF 3478
Query 178 EGKFYGPFVDRQTAQAAGTDTTITLNVLAWLYAAVINGDRWFLNRFTTTLNDFNLVAMKY 237
+G YG F D+QT Q TD T+NV+AWLYAAV+NG +WF+ + +N A+
Sbjct 3479 DGVMYGAFEDKQTHQLQLTDKYCTINVVAWLYAAVLNGCKWFVKPTRVGIVTYNEWALSN 3538
Query 238 NY-EPLTQDHVDILGPLSAQTGIAVLDMCAALKELLQNGMNGRTILGSTILEDEFTPFDV 296
+ E + +D+ L+ +TG++V M AA++ L G G+TILG + LEDEFTP DV
Sbjct 3539 QFTEFVGTQSIDM---LAHRTGVSVEQMLAAIQS-LHAGFQGKTILGQSTLEDEFTPDDV 3594
Query 297 VRQCSGVTFQ 306
Q GV Q
Sbjct 3595 NMQVMGVVMQ 3604
>RecName: Full=Replicase polyprotein 1a; Short=pp1a; AltName: Full=ORF1a polyprotein; Contains: RecName: Full=Non-structural protein 1; Short=nsp1; AltName: Full=p28; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p65; Contains: RecName: Full=Papain-like protease nsp3; Short=PL-PRO; AltName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=PL1-PRO/PL2-PRO; AltName: Full=PL1/PL2; AltName: Full=PL2-PRO; AltName: Full=Papain-like proteinases 1/2; AltName: Full=p210; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; AltName: Full=Peptide HD2; AltName: Full=p44; Contains: RecName: Full=3C-like proteinase nsp5; Short=3CL-PRO; Short=3CLp; AltName: Full=M-PRO; AltName: Full=nsp5; AltName: Full=p27; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; AltName: Full=p10; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; AltName: Full=p22; Contains: RecName: Full=RNA-capping enzyme subunit nsp9; AltName: Full=Non-structural protein 9; Short=nsp9; AltName: Full=p12; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; AltName: Full=p15; Contains: RecName: Full=Non-structural protein 11; Short=nsp11 [Murine hepatitis virus strain JHM]
Sequence ID: P0C6V1.1 Length: 4474
Range 1: 3337 to 3639
Score:308 bits(789), Expect:3e-94,
Method:Compositional matrix adjust.,
Identities:153/306(50%), Positives:198/306(64%), Gaps:3/306(0%)
Query 1 SGFRKMAFPSGKVEGCMVQVTCGTTTLNGLWLDDTVYCPRHVVCTAEDMLNPNYDDLLIR 60
SG KM P+ KVE C+V VT G TLNGLWLDD VYCPRHV+C++ DM +P+Y +LL R
Sbjct 3337 SGIVKMVSPTSKVEPCVVSVTYGNMTLNGLWLDDKVYCPRHVICSSADMTDPDYPNLLCR 3396
Query 61 KSNHSFLVQAGNVQLRVIGHSMQNCLLRLKVDTSNPKTPKYKFVRIQPGQTFSVLACYNG 120
++ F V + + L V+ + MQ LL L V NP TPKY F ++PG+TF+VLA YNG
Sbjct 3397 VTSSDFCVMSDRMSLTVMSYQMQGSLLVLTVTLQNPNTPKYSFGVVKPGETFTVLAAYNG 3456
Query 121 SPSGVYQCAMRPNHTIKGSFLNGSCGSVGFNIDYDCVSFCYMHHMELPTGVHAGTDLEGK 180
P G + MR +HTIKGSFL GSCGSVG+ + D V F YMH +EL TG H GTD G
Sbjct 3457 RPQGAFHVVMRSSHTIKGSFLCGSCGSVGYVLTGDSVRFVYMHQLELSTGCHTGTDFSGN 3516
Query 181 FYGPFVDRQTAQAAGTDTTITLNVLAWLYAAVINGDRWFLNRFTTTLNDFNLVAMKYNYE 240
FYGP+ D Q Q D T T+NV+AWLYAA++N WF+ + +L +FN+ AM +
Sbjct 3517 FYGPYRDAQVVQLPVQDYTQTVNVVAWLYAAILNRCNWFVQSDSCSLEEFNVWAMTNGFS 3576
Query 241 PLTQDHVDILGPLSAQTGIAVLDMCAALKELLQNGMNGRTILGSTILEDEFTPFDVVRQC 300
+ D V L L++ TG+ V + AA+K L +G G+ ILGS +LEDE TP DV +Q
Sbjct 3577 SIKADLV--LDALASMTGVTVEQVLAAIKR-LHSGFQGKQILGSCVLEDELTPSDVYQQL 3633
Query 301 SGVTFQ 306
+GV Q
Sbjct 3634 AGVKLQ 3639
>RecName: Full=Replicase polyprotein 1a; Short=pp1a; AltName: Full=ORF1a polyprotein; Contains: RecName: Full=Non-structural protein 1; Short=nsp1; AltName: Full=p28; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p65; Contains: RecName: Full=Papain-like protease nsp3; Short=PL-PRO; AltName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=PL1-PRO/PL2-PRO; AltName: Full=PL1/PL2; AltName: Full=PL2-PRO; AltName: Full=Papain-like proteinases 1/2; AltName: Full=p210; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; AltName: Full=Peptide HD2; AltName: Full=p44; Contains: RecName: Full=3C-like proteinase nsp5; Short=3CL-PRO; Short=3CLp; AltName: Full=M-PRO; AltName: Full=nsp5; AltName: Full=p27; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; AltName: Full=p10; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; AltName: Full=p22; Contains: RecName: Full=RNA-capping enzyme subunit nsp9; AltName: Full=Non-structural protein 9; Short=nsp9; AltName: Full=p12; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; AltName: Full=p15; Contains: RecName: Full=Non-structural protein 11; Short=nsp11 [Murine hepatitis virus strain 2]
Sequence ID: P0C6U9.1 Length: 4416
Range 1: 3280 to 3582
Score:308 bits(789), Expect:3e-94,
Method:Compositional matrix adjust.,
Identities:153/306(50%), Positives:198/306(64%), Gaps:3/306(0%)
Query 1 SGFRKMAFPSGKVEGCMVQVTCGTTTLNGLWLDDTVYCPRHVVCTAEDMLNPNYDDLLIR 60
SG KM FP+ KVE C+V VT G TLNGLWLDD VYCPRHV+C++ DM +P+Y +LL R
Sbjct 3280 SGIVKMVFPTSKVEPCVVSVTYGNMTLNGLWLDDKVYCPRHVICSSADMTDPDYSNLLCR 3339
Query 61 KSNHSFLVQAGNVQLRVIGHSMQNCLLRLKVDTSNPKTPKYKFVRIQPGQTFSVLACYNG 120
+ F V +G + L V+ + MQ LL L V NP TPKY F ++PG+TF+VLA YNG
Sbjct 3340 VISSDFCVMSGRMSLTVMSYQMQGSLLVLTVTLQNPNTPKYSFGVVKPGETFTVLAAYNG 3399
Query 121 SPSGVYQCAMRPNHTIKGSFLNGSCGSVGFNIDYDCVSFCYMHHMELPTGVHAGTDLEGK 180
G + MR ++TIKGSFL GSCGSVG+ + D V F YMH +EL TG H GTD G
Sbjct 3400 KSQGAFHVTMRSSYTIKGSFLCGSCGSVGYVLTGDSVRFVYMHQLELSTGCHTGTDFSGN 3459
Query 181 FYGPFVDRQTAQAAGTDTTITLNVLAWLYAAVINGDRWFLNRFTTTLNDFNLVAMKYNYE 240
FYGP+ D Q Q D T T+NV+AWLYAA++N WF+ + +L +FN+ AM +
Sbjct 3460 FYGPYRDAQVVQLPVQDYTQTVNVVAWLYAAILNRCNWFVQSDSCSLEEFNVWAMTNGFS 3519
Query 241 PLTQDHVDILGPLSAQTGIAVLDMCAALKELLQNGMNGRTILGSTILEDEFTPFDVVRQC 300
+ D V L L++ TG+ V + AA+K L +G G+ ILGS +LEDE TP DV +Q
Sbjct 3520 SIKADLV--LDALASMTGVTVEQILAAIKRLY-SGFQGKQILGSCVLEDELTPSDVYQQL 3576
Query 301 SGVTFQ 306
+GV Q
Sbjct 3577 AGVKLQ 3582
>RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Host translation inhibitor nsp1; Short=nsp1; AltName: Full=p28; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p65; Contains: RecName: Full=Papain-like proteinase nsp3; Short=PL-PRO; AltName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=p210; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; AltName: Full=Peptide HD2; AltName: Full=p44; Contains: RecName: Full=3C-like proteinase nsp5; Short=3CL-PRO; Short=3CLp; AltName: Full=M-PRO; AltName: Full=nsp5; AltName: Full=p27; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; AltName: Full=p10; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; AltName: Full=p22; Contains: RecName: Full=Viral protein genome-linked nsp9; AltName: Full=Non-structural protein 9; Short=nsp9; AltName: Full=RNA-capping enzyme subunit nsp9; AltName: Full=p12; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; AltName: Full=p15; Contains: RecName: Full=RNA-directed RNA polymerase nsp12; Short=Pol; Short=RdRp; AltName: Full=nsp12; AltName: Full=p100; Contains: RecName: Full=Helicase nsp13; Short=Hel; AltName: Full=nsp13; AltName: Full=p67; Contains: RecName: Full=Guanine-N7 methyltransferase nsp14; Short=ExoN; AltName: Full=nsp14; Contains: RecName: Full=Uridylate-specific endoribonuclease nsp15; AltName: Full=NendoU; AltName: Full=nsp15; AltName: Full=p35; Contains: RecName: Full=2'-O-methyl transferase nsp16; AltName: Full=nsp16 [Murine hepatitis virus strain JHM]
Sequence ID: P0C6Y0.1 Length: 7180
Range 1: 3337 to 3639
Score:308 bits(788), Expect:4e-94,
Method:Compositional matrix adjust.,
Identities:153/306(50%), Positives:198/306(64%), Gaps:3/306(0%)
Query 1 SGFRKMAFPSGKVEGCMVQVTCGTTTLNGLWLDDTVYCPRHVVCTAEDMLNPNYDDLLIR 60
SG KM P+ KVE C+V VT G TLNGLWLDD VYCPRHV+C++ DM +P+Y +LL R
Sbjct 3337 SGIVKMVSPTSKVEPCVVSVTYGNMTLNGLWLDDKVYCPRHVICSSADMTDPDYPNLLCR 3396
Query 61 KSNHSFLVQAGNVQLRVIGHSMQNCLLRLKVDTSNPKTPKYKFVRIQPGQTFSVLACYNG 120
++ F V + + L V+ + MQ LL L V NP TPKY F ++PG+TF+VLA YNG
Sbjct 3397 VTSSDFCVMSDRMSLTVMSYQMQGSLLVLTVTLQNPNTPKYSFGVVKPGETFTVLAAYNG 3456
Query 121 SPSGVYQCAMRPNHTIKGSFLNGSCGSVGFNIDYDCVSFCYMHHMELPTGVHAGTDLEGK 180
P G + MR +HTIKGSFL GSCGSVG+ + D V F YMH +EL TG H GTD G
Sbjct 3457 RPQGAFHVVMRSSHTIKGSFLCGSCGSVGYVLTGDSVRFVYMHQLELSTGCHTGTDFSGN 3516
Query 181 FYGPFVDRQTAQAAGTDTTITLNVLAWLYAAVINGDRWFLNRFTTTLNDFNLVAMKYNYE 240
FYGP+ D Q Q D T T+NV+AWLYAA++N WF+ + +L +FN+ AM +
Sbjct 3517 FYGPYRDAQVVQLPVQDYTQTVNVVAWLYAAILNRCNWFVQSDSCSLEEFNVWAMTNGFS 3576
Query 241 PLTQDHVDILGPLSAQTGIAVLDMCAALKELLQNGMNGRTILGSTILEDEFTPFDVVRQC 300
+ D V L L++ TG+ V + AA+K L +G G+ ILGS +LEDE TP DV +Q
Sbjct 3577 SIKADLV--LDALASMTGVTVEQVLAAIKR-LHSGFQGKQILGSCVLEDELTPSDVYQQL 3633
Query 301 SGVTFQ 306
+GV Q
Sbjct 3634 AGVKLQ 3639
>RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Host translation inhibitor nsp1; Short=nsp1; AltName: Full=p28; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p65; Contains: RecName: Full=Papain-like proteinase nsp3; Short=PL-PRO; AltName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=p210; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; AltName: Full=Peptide HD2; AltName: Full=p44; Contains: RecName: Full=3C-like proteinase nsp5; Short=3CL-PRO; Short=3CLp; AltName: Full=M-PRO; AltName: Full=nsp5; AltName: Full=p27; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; AltName: Full=p10; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; AltName: Full=p22; Contains: RecName: Full=Viral protein genome-linked nsp9; AltName: Full=Non-structural protein 9; Short=nsp9; AltName: Full=RNA-capping enzyme subunit nsp9; AltName: Full=p12; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; AltName: Full=p15; Contains: RecName: Full=RNA-directed RNA polymerase nsp12; Short=Pol; Short=RdRp; AltName: Full=nsp12; AltName: Full=p100; Contains: RecName: Full=Helicase nsp13; Short=Hel; AltName: Full=nsp13; AltName: Full=p67; Contains: RecName: Full=Guanine-N7 methyltransferase nsp14; Short=ExoN; AltName: Full=nsp14; Contains: RecName: Full=Uridylate-specific endoribonuclease nsp15; AltName: Full=NendoU; AltName: Full=nsp15; AltName: Full=p35; Contains: RecName: Full=2'-O-methyltransferase nsp16; AltName: Full=nsp16 [Murine hepatitis virus strain 2]
Sequence ID: P0C6X8.1 Length: 7124
Range 1: 3280 to 3582
Score:308 bits(788), Expect:5e-94,
Method:Compositional matrix adjust.,
Identities:153/306(50%), Positives:198/306(64%), Gaps:3/306(0%)
Query 1 SGFRKMAFPSGKVEGCMVQVTCGTTTLNGLWLDDTVYCPRHVVCTAEDMLNPNYDDLLIR 60
SG KM FP+ KVE C+V VT G TLNGLWLDD VYCPRHV+C++ DM +P+Y +LL R
Sbjct 3280 SGIVKMVFPTSKVEPCVVSVTYGNMTLNGLWLDDKVYCPRHVICSSADMTDPDYSNLLCR 3339
Query 61 KSNHSFLVQAGNVQLRVIGHSMQNCLLRLKVDTSNPKTPKYKFVRIQPGQTFSVLACYNG 120
+ F V +G + L V+ + MQ LL L V NP TPKY F ++PG+TF+VLA YNG
Sbjct 3340 VISSDFCVMSGRMSLTVMSYQMQGSLLVLTVTLQNPNTPKYSFGVVKPGETFTVLAAYNG 3399
Query 121 SPSGVYQCAMRPNHTIKGSFLNGSCGSVGFNIDYDCVSFCYMHHMELPTGVHAGTDLEGK 180
G + MR ++TIKGSFL GSCGSVG+ + D V F YMH +EL TG H GTD G
Sbjct 3400 KSQGAFHVTMRSSYTIKGSFLCGSCGSVGYVLTGDSVRFVYMHQLELSTGCHTGTDFSGN 3459
Query 181 FYGPFVDRQTAQAAGTDTTITLNVLAWLYAAVINGDRWFLNRFTTTLNDFNLVAMKYNYE 240
FYGP+ D Q Q D T T+NV+AWLYAA++N WF+ + +L +FN+ AM +
Sbjct 3460 FYGPYRDAQVVQLPVQDYTQTVNVVAWLYAAILNRCNWFVQSDSCSLEEFNVWAMTNGFS 3519
Query 241 PLTQDHVDILGPLSAQTGIAVLDMCAALKELLQNGMNGRTILGSTILEDEFTPFDVVRQC 300
+ D V L L++ TG+ V + AA+K L +G G+ ILGS +LEDE TP DV +Q
Sbjct 3520 SIKADLV--LDALASMTGVTVEQILAAIKRLY-SGFQGKQILGSCVLEDELTPSDVYQQL 3576
Query 301 SGVTFQ 306
+GV Q
Sbjct 3577 AGVKLQ 3582
>RecName: Full=Replicase polyprotein 1a; Short=pp1a; AltName: Full=ORF1a polyprotein; Contains: RecName: Full=Non-structural protein 1; Short=nsp1; AltName: Full=p28; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p65; Contains: RecName: Full=Papain-like protease nsp3; Short=PL-PRO; AltName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=PL1-PRO/PL2-PRO; AltName: Full=PL1/PL2; AltName: Full=PL2-PRO; AltName: Full=Papain-like proteinases 1/2; AltName: Full=p210; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; AltName: Full=Peptide HD2; AltName: Full=p44; Contains: RecName: Full=3C-like proteinase nsp5; Short=3CL-PRO; Short=3CLp; AltName: Full=M-PRO; AltName: Full=nsp5; AltName: Full=p27; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; AltName: Full=p10; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; AltName: Full=p22; Contains: RecName: Full=RNA-capping enzyme subunit nsp9; AltName: Full=Non-structural protein 9; Short=nsp9; AltName: Full=p12; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; AltName: Full=p15; Contains: RecName: Full=Non-structural protein 11; Short=nsp11 [Murine hepatitis virus strain A59]
Sequence ID: P0C6V0.1 Length: 4468
Range 1: 3334 to 3635
Score:305 bits(782), Expect:3e-93,
Method:Compositional matrix adjust.,
Identities:153/306(50%), Positives:198/306(64%), Gaps:4/306(1%)
Query 1 SGFRKMAFPSGKVEGCMVQVTCGTTTLNGLWLDDTVYCPRHVVCTAEDMLNPNYDDLLIR 60
SG KM P+ KVE C+V VT G TLNGLWLDD VYCPRHV+C++ DM +P+Y +LL R
Sbjct 3334 SGIVKMVSPTSKVEPCIVSVTYGNMTLNGLWLDDKVYCPRHVICSSADMTDPDYPNLLCR 3393
Query 61 KSNHSFLVQAGNVQLRVIGHSMQNCLLRLKVDTSNPKTPKYKFVRIQPGQTFSVLACYNG 120
++ F V +G + L V+ + MQ C L L V NP TPKY F ++PG+TF+VLA YNG
Sbjct 3394 VTSSDFCVMSGRMSLTVMSYQMQGCQLVLTVTLQNPNTPKYSFGVVKPGETFTVLAAYNG 3453
Query 121 SPSGVYQCAMRPNHTIKGSFLNGSCGSVGFNIDYDCVSFCYMHHMELPTGVHAGTDLEGK 180
P G + +R +HTIKGSFL GSCGSVG+ + D V F YMH +EL TG H GTD G
Sbjct 3454 RPQGAFHVTLRSSHTIKGSFLCGSCGSVGYVLTGDSVRFVYMHQLELSTGCHTGTDFSGN 3513
Query 181 FYGPFVDRQTAQAAGTDTTITLNVLAWLYAAVINGDRWFLNRFTTTLNDFNLVAMKYNYE 240
FYGP+ D Q Q D T T+NV+AWLYAA+ N WF+ + +L +FN+ AM +
Sbjct 3514 FYGPYRDAQVVQLPVQDYTQTVNVVAWLYAAIFNRCNWFVQSDSCSLEEFNVWAMTNGFS 3573
Query 241 PLTQDHVDILGPLSAQTGIAVLDMCAALKELLQNGMNGRTILGSTILEDEFTPFDVVRQC 300
+ D V L L++ TG+ V + AA+K L +G G+ ILGS +LEDE TP DV +Q
Sbjct 3574 SIKADLV--LDALASMTGVTVEQVLAAIKR-LHSGFQGKQILGSCVLEDE-TPSDVYQQL 3629
Query 301 SGVTFQ 306
+GV Q
Sbjct 3630 AGVKLQ 3635
>RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Host translation inhibitor nsp1; Short=nsp1; AltName: Full=p28; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p65; Contains: RecName: Full=Papain-like proteinase nsp3; Short=PL-PRO; AltName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=p210; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; AltName: Full=Peptide HD2; AltName: Full=p44; Contains: RecName: Full=3C-like proteinase nsp5; Short=3CL-PRO; Short=3CLp; AltName: Full=M-PRO; AltName: Full=nsp5; AltName: Full=p27; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; AltName: Full=p10; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; AltName: Full=p22; Contains: RecName: Full=Viral protein genome-linked nsp9; AltName: Full=Non-structural protein 9; Short=nsp9; AltName: Full=RNA-capping enzyme subunit nsp9; AltName: Full=p12; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; AltName: Full=p15; Contains: RecName: Full=RNA-directed RNA polymerase nsp12; Short=Pol; Short=RdRp; AltName: Full=nsp12; AltName: Full=p100; Contains: RecName: Full=Helicase nsp13; Short=Hel; AltName: Full=nsp13; AltName: Full=p67; Contains: RecName: Full=Guanine-N7 methyltransferase nsp14; Short=ExoN; AltName: Full=nsp14; Contains: RecName: Full=Uridylate-specific endoribonuclease nsp15; AltName: Full=NendoU; AltName: Full=nsp15; AltName: Full=p35; Contains: RecName: Full=2'-O-methyltransferase nsp16; AltName: Full=nsp16 [Murine hepatitis virus strain A59]
Sequence ID: P0C6X9.1 Length: 7176
Range 1: 3334 to 3635
Score:305 bits(781), Expect:4e-93,
Method:Compositional matrix adjust.,
Identities:153/306(50%), Positives:198/306(64%), Gaps:4/306(1%)
Query 1 SGFRKMAFPSGKVEGCMVQVTCGTTTLNGLWLDDTVYCPRHVVCTAEDMLNPNYDDLLIR 60
SG KM P+ KVE C+V VT G TLNGLWLDD VYCPRHV+C++ DM +P+Y +LL R
Sbjct 3334 SGIVKMVSPTSKVEPCIVSVTYGNMTLNGLWLDDKVYCPRHVICSSADMTDPDYPNLLCR 3393
Query 61 KSNHSFLVQAGNVQLRVIGHSMQNCLLRLKVDTSNPKTPKYKFVRIQPGQTFSVLACYNG 120
++ F V +G + L V+ + MQ C L L V NP TPKY F ++PG+TF+VLA YNG
Sbjct 3394 VTSSDFCVMSGRMSLTVMSYQMQGCQLVLTVTLQNPNTPKYSFGVVKPGETFTVLAAYNG 3453
Query 121 SPSGVYQCAMRPNHTIKGSFLNGSCGSVGFNIDYDCVSFCYMHHMELPTGVHAGTDLEGK 180
P G + +R +HTIKGSFL GSCGSVG+ + D V F YMH +EL TG H GTD G
Sbjct 3454 RPQGAFHVTLRSSHTIKGSFLCGSCGSVGYVLTGDSVRFVYMHQLELSTGCHTGTDFSGN 3513
Query 181 FYGPFVDRQTAQAAGTDTTITLNVLAWLYAAVINGDRWFLNRFTTTLNDFNLVAMKYNYE 240
FYGP+ D Q Q D T T+NV+AWLYAA+ N WF+ + +L +FN+ AM +
Sbjct 3514 FYGPYRDAQVVQLPVQDYTQTVNVVAWLYAAIFNRCNWFVQSDSCSLEEFNVWAMTNGFS 3573
Query 241 PLTQDHVDILGPLSAQTGIAVLDMCAALKELLQNGMNGRTILGSTILEDEFTPFDVVRQC 300
+ D V L L++ TG+ V + AA+K L +G G+ ILGS +LEDE TP DV +Q
Sbjct 3574 SIKADLV--LDALASMTGVTVEQVLAAIKR-LHSGFQGKQILGSCVLEDE-TPSDVYQQL 3629
Query 301 SGVTFQ 306
+GV Q
Sbjct 3630 AGVKLQ 3635
>RecName: Full=Replicase polyprotein 1a; Short=pp1a; AltName: Full=ORF1a polyprotein; Contains: RecName: Full=Non-structural protein 1; Short=nsp1; AltName: Full=p28; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p65; Contains: RecName: Full=Papain-like protease nsp3; Short=PL-PRO; AltName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=PL1-PRO/PL2-PRO; AltName: Full=PL1/PL2; AltName: Full=PL2-PRO; AltName: Full=Papain-like proteinases 1/2; AltName: Full=p210; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; AltName: Full=Peptide HD2; AltName: Full=p44; Contains: RecName: Full=3C-like proteinase nsp5; Short=3CL-PRO; Short=3CLp; AltName: Full=M-PRO; AltName: Full=nsp5; AltName: Full=p27; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; AltName: Full=p10; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; AltName: Full=p22; Contains: RecName: Full=RNA-capping enzyme subunit nsp9; AltName: Full=Non-structural protein 9; Short=nsp9; AltName: Full=p12; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; AltName: Full=p15; Contains: RecName: Full=Non-structural protein 11; Short=nsp11 [Bovine coronavirus strain Quebec]
Sequence ID: P0C6U1.1 Length: 4383
Range 1: 3247 to 3549
Score:304 bits(779), Expect:8e-93,
Method:Compositional matrix adjust.,
Identities:148/306(48%), Positives:196/306(64%), Gaps:3/306(0%)
Query 1 SGFRKMAFPSGKVEGCMVQVTCGTTTLNGLWLDDTVYCPRHVVCTAEDMLNPNYDDLLIR 60
SG KM P+ KVE C+V VT G TLNGLWLDD VYCPRHV+C+A DM NP+Y +LL R
Sbjct 3247 SGIVKMVNPTSKVEPCIVSVTYGNMTLNGLWLDDKVYCPRHVICSASDMTNPDYTNLLCR 3306
Query 61 KSNHSFLVQAGNVQLRVIGHSMQNCLLRLKVDTSNPKTPKYKFVRIQPGQTFSVLACYNG 120
++ F V + L V+ + MQ C+L L V N +TPKY F ++PG+TF+VLA YNG
Sbjct 3307 VTSSDFTVLFDRLSLTVMSYQMQGCMLVLTVTLQNSRTPKYTFGVVKPGETFTVLAAYNG 3366
Query 121 SPSGVYQCAMRPNHTIKGSFLNGSCGSVGFNIDYDCVSFCYMHHMELPTGVHAGTDLEGK 180
P G + MR ++TIKGSFL GSCGSVG+ I DCV F YMH +EL TG H GTD G
Sbjct 3367 KPQGAFHVTMRSSYTIKGSFLCGSCGSVGYVIMGDCVKFVYMHQLELSTGCHTGTDFNGD 3426
Query 181 FYGPFVDRQTAQAAGTDTTITLNVLAWLYAAVINGDRWFLNRFTTTLNDFNLVAMKYNYE 240
FYGP+ D Q Q D ++N +AWLYAA++N WF+ ++ DFN+ A+ +
Sbjct 3427 FYGPYKDAQVVQLPVQDYIQSVNFVAWLYAAILNNCNWFVQSDKCSVEDFNVWALSNGFS 3486
Query 241 PLTQDHVDILGPLSAQTGIAVLDMCAALKELLQNGMNGRTILGSTILEDEFTPFDVVRQC 300
+ D V + L++ TG+++ + AA+K L+NG GR I+GS EDE TP DV +Q
Sbjct 3487 QVKSDLV--IDALASMTGVSLETLLAAIKR-LKNGFQGRQIMGSCSFEDELTPSDVYQQL 3543
Query 301 SGVTFQ 306
+G+ Q
Sbjct 3544 AGIKLQ 3549
>RecName: Full=Replicase polyprotein 1a; Short=pp1a; AltName: Full=ORF1a polyprotein; Contains: RecName: Full=Non-structural protein 1; Short=nsp1; AltName: Full=p28; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p65; Contains: RecName: Full=Papain-like protease nsp3; Short=PL-PRO; AltName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=PL1-PRO/PL2-PRO; AltName: Full=PL1/PL2; AltName: Full=PL2-PRO; AltName: Full=Papain-like proteinases 1/2; AltName: Full=p210; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; AltName: Full=Peptide HD2; AltName: Full=p44; Contains: RecName: Full=3C-like proteinase nsp5; Short=3CL-PRO; Short=3CLp; AltName: Full=M-PRO; AltName: Full=nsp5; AltName: Full=p27; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; AltName: Full=p10; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; AltName: Full=p22; Contains: RecName: Full=RNA-capping enzyme subunit nsp9; AltName: Full=Non-structural protein 9; Short=nsp9; AltName: Full=p12; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; AltName: Full=p15; Contains: RecName: Full=Non-structural protein 11; Short=nsp11 [Human coronavirus OC43]
Sequence ID: P0C6U7.1 Length: 4383
Range 1: 3247 to 3549
Score:304 bits(778), Expect:1e-92,
Method:Compositional matrix adjust.,
Identities:148/306(48%), Positives:196/306(64%), Gaps:3/306(0%)
Query 1 SGFRKMAFPSGKVEGCMVQVTCGTTTLNGLWLDDTVYCPRHVVCTAEDMLNPNYDDLLIR 60
SG KM P+ KVE C+V VT G TLNGLWLDD VYCPRHV+C+A DM NP+Y +LL R
Sbjct 3247 SGIVKMVNPTSKVEPCVVSVTYGNMTLNGLWLDDKVYCPRHVICSASDMTNPDYTNLLCR 3306
Query 61 KSNHSFLVQAGNVQLRVIGHSMQNCLLRLKVDTSNPKTPKYKFVRIQPGQTFSVLACYNG 120
++ F V + L V+ + M+ C+L L V N +TPKY F ++PG+TF+VLA YNG
Sbjct 3307 VTSSDFTVLFDRLSLTVMSYQMRGCMLVLTVTLQNSRTPKYTFGVVKPGETFTVLAAYNG 3366
Query 121 SPSGVYQCAMRPNHTIKGSFLNGSCGSVGFNIDYDCVSFCYMHHMELPTGVHAGTDLEGK 180
P G + MR ++TIKGSFL GSCGSVG+ I DCV F YMH +EL TG H GTD G
Sbjct 3367 KPQGAFHVTMRSSYTIKGSFLCGSCGSVGYVIMGDCVKFVYMHQLELSTGCHTGTDFNGD 3426
Query 181 FYGPFVDRQTAQAAGTDTTITLNVLAWLYAAVINGDRWFLNRFTTTLNDFNLVAMKYNYE 240
FYGP+ D Q Q D ++N LAWLYAA++N WF+ ++ DFN+ A+ +
Sbjct 3427 FYGPYKDAQVVQLPIQDYIQSVNFLAWLYAAILNNCNWFIQSDKCSVEDFNVWALSNGFS 3486
Query 241 PLTQDHVDILGPLSAQTGIAVLDMCAALKELLQNGMNGRTILGSTILEDEFTPFDVVRQC 300
+ D V + L++ TG+++ + AA+K L+NG GR I+GS EDE TP DV +Q
Sbjct 3487 QVKSDLV--IDALASMTGVSLETLLAAIKR-LKNGFQGRQIMGSCSFEDELTPSDVYQQL 3543
Query 301 SGVTFQ 306
+G+ Q
Sbjct 3544 AGIKLQ 3549
>RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Host translation inhibitor nsp1; Short=nsp1; AltName: Full=p28; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p65; Contains: RecName: Full=Papain-like proteinase nsp3; Short=PL-PRO; AltName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=p210; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; AltName: Full=Peptide HD2; AltName: Full=p44; Contains: RecName: Full=3C-like proteinase nsp5; Short=3CL-PRO; Short=3CLp; AltName: Full=M-PRO; AltName: Full=nsp5; AltName: Full=p27; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; AltName: Full=p10; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; AltName: Full=p22; Contains: RecName: Full=Viral protein genome-linked nsp9; AltName: Full=Non-structural protein 9; Short=nsp9; AltName: Full=RNA-capping enzyme subunit nsp9; AltName: Full=p12; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; AltName: Full=p15; Contains: RecName: Full=RNA-directed RNA polymerase nsp12; Short=Pol; Short=RdRp; AltName: Full=nsp12; AltName: Full=p100; Contains: RecName: Full=Helicase nsp13; Short=Hel; AltName: Full=nsp13; AltName: Full=p67; Contains: RecName: Full=Guanine-N7 methyltransferase nsp14; Short=ExoN; AltName: Full=nsp14; Contains: RecName: Full=Uridylate-specific endoribonuclease nsp15; AltName: Full=NendoU; AltName: Full=nsp15; AltName: Full=p35; Contains: RecName: Full=2'-O-methyltransferase nsp16; AltName: Full=nsp16 [Bovine coronavirus strain Quebec]
Sequence ID: P0C6X0.1 Length: 7059
Range 1: 3247 to 3549
Score:303 bits(777), Expect:1e-92,
Method:Compositional matrix adjust.,
Identities:148/306(48%), Positives:196/306(64%), Gaps:3/306(0%)
Query 1 SGFRKMAFPSGKVEGCMVQVTCGTTTLNGLWLDDTVYCPRHVVCTAEDMLNPNYDDLLIR 60
SG KM P+ KVE C+V VT G TLNGLWLDD VYCPRHV+C+A DM NP+Y +LL R
Sbjct 3247 SGIVKMVNPTSKVEPCIVSVTYGNMTLNGLWLDDKVYCPRHVICSASDMTNPDYTNLLCR 3306
Query 61 KSNHSFLVQAGNVQLRVIGHSMQNCLLRLKVDTSNPKTPKYKFVRIQPGQTFSVLACYNG 120
++ F V + L V+ + MQ C+L L V N +TPKY F ++PG+TF+VLA YNG
Sbjct 3307 VTSSDFTVLFDRLSLTVMSYQMQGCMLVLTVTLQNSRTPKYTFGVVKPGETFTVLAAYNG 3366
Query 121 SPSGVYQCAMRPNHTIKGSFLNGSCGSVGFNIDYDCVSFCYMHHMELPTGVHAGTDLEGK 180
P G + MR ++TIKGSFL GSCGSVG+ I DCV F YMH +EL TG H GTD G
Sbjct 3367 KPQGAFHVTMRSSYTIKGSFLCGSCGSVGYVIMGDCVKFVYMHQLELSTGCHTGTDFNGD 3426
Query 181 FYGPFVDRQTAQAAGTDTTITLNVLAWLYAAVINGDRWFLNRFTTTLNDFNLVAMKYNYE 240
FYGP+ D Q Q D ++N +AWLYAA++N WF+ ++ DFN+ A+ +
Sbjct 3427 FYGPYKDAQVVQLPVQDYIQSVNFVAWLYAAILNNCNWFVQSDKCSVEDFNVWALSNGFS 3486
Query 241 PLTQDHVDILGPLSAQTGIAVLDMCAALKELLQNGMNGRTILGSTILEDEFTPFDVVRQC 300
+ D V + L++ TG+++ + AA+K L+NG GR I+GS EDE TP DV +Q
Sbjct 3487 QVKSDLV--IDALASMTGVSLETLLAAIKR-LKNGFQGRQIMGSCSFEDELTPSDVYQQL 3543
Query 301 SGVTFQ 306
+G+ Q
Sbjct 3544 AGIKLQ 3549
>RecName: Full=Replicase polyprotein 1a; Short=pp1a; AltName: Full=ORF1a polyprotein; Contains: RecName: Full=Non-structural protein 1; Short=nsp1; AltName: Full=p28; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p65; Contains: RecName: Full=Papain-like protease nsp3; Short=PL-PRO; AltName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=PL1-PRO/PL2-PRO; AltName: Full=PL1/PL2; AltName: Full=PL2-PRO; AltName: Full=Papain-like proteinases 1/2; AltName: Full=p210; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; AltName: Full=Peptide HD2; AltName: Full=p44; Contains: RecName: Full=3C-like proteinase nsp5; Short=3CL-PRO; Short=3CLp; AltName: Full=M-PRO; AltName: Full=nsp5; AltName: Full=p27; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; AltName: Full=p10; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; AltName: Full=p22; Contains: RecName: Full=RNA-capping enzyme subunit nsp9; AltName: Full=Non-structural protein 9; Short=nsp9; AltName: Full=p12; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; AltName: Full=p15; Contains: RecName: Full=Non-structural protein 11; Short=nsp11 [Bovine respiratory coronavirus (strain 98TXSF-110-LUN)]
Sequence ID: P0C6T9.1 Length: 4383
Range 1: 3247 to 3549
Score:303 bits(777), Expect:2e-92,
Method:Compositional matrix adjust.,
Identities:147/306(48%), Positives:196/306(64%), Gaps:3/306(0%)
Query 1 SGFRKMAFPSGKVEGCMVQVTCGTTTLNGLWLDDTVYCPRHVVCTAEDMLNPNYDDLLIR 60
SG KM P+ KVE C+V VT G TLNGLWLDD VYCPRHV+C+A DM NP+Y +LL R
Sbjct 3247 SGIVKMVNPTSKVEPCIVSVTYGNMTLNGLWLDDKVYCPRHVICSASDMTNPDYTNLLCR 3306
Query 61 KSNHSFLVQAGNVQLRVIGHSMQNCLLRLKVDTSNPKTPKYKFVRIQPGQTFSVLACYNG 120
++ F V + L V+ + MQ C+L L V N +TPKY F ++PG+TF+VLA YNG
Sbjct 3307 VTSSDFTVLFDRLSLTVMSYQMQGCMLVLTVTLQNSRTPKYTFGVVKPGETFTVLAAYNG 3366
Query 121 SPSGVYQCAMRPNHTIKGSFLNGSCGSVGFNIDYDCVSFCYMHHMELPTGVHAGTDLEGK 180
P G + MR ++TIKGSFL GSCGSVG+ + DCV F YMH +EL TG H GTD G
Sbjct 3367 KPQGAFHVTMRSSYTIKGSFLCGSCGSVGYVLMGDCVKFVYMHQLELSTGCHTGTDFNGD 3426
Query 181 FYGPFVDRQTAQAAGTDTTITLNVLAWLYAAVINGDRWFLNRFTTTLNDFNLVAMKYNYE 240
FYGP+ D Q Q D ++N +AWLYAA++N WF+ ++ DFN+ A+ +
Sbjct 3427 FYGPYKDAQVVQLPVQDYIQSVNFVAWLYAAILNNCNWFVQSDKCSVEDFNVWALSNGFS 3486
Query 241 PLTQDHVDILGPLSAQTGIAVLDMCAALKELLQNGMNGRTILGSTILEDEFTPFDVVRQC 300
+ D V + L++ TG+++ + AA+K L+NG GR I+GS EDE TP DV +Q
Sbjct 3487 QVKSDLV--IDALASMTGVSLETLLAAIKR-LKNGFQGRQIMGSCSFEDELTPSDVYQQL 3543
Query 301 SGVTFQ 306
+G+ Q
Sbjct 3544 AGIKLQ 3549
>RecName: Full=Replicase polyprotein 1a; Short=pp1a; AltName: Full=ORF1a polyprotein; Contains: RecName: Full=Non-structural protein 1; Short=nsp1; AltName: Full=p28; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p65; Contains: RecName: Full=Papain-like protease nsp3; Short=PL-PRO; AltName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=PL1-PRO/PL2-PRO; AltName: Full=PL1/PL2; AltName: Full=PL2-PRO; AltName: Full=Papain-like proteinases 1/2; AltName: Full=p210; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; AltName: Full=Peptide HD2; AltName: Full=p44; Contains: RecName: Full=3C-like proteinase nsp5; Short=3CL-PRO; Short=3CLp; AltName: Full=M-PRO; AltName: Full=nsp5; AltName: Full=p27; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; AltName: Full=p10; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; AltName: Full=p22; Contains: RecName: Full=RNA-capping enzyme subunit nsp9; AltName: Full=Non-structural protein 9; Short=nsp9; AltName: Full=p12; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; AltName: Full=p15; Contains: RecName: Full=Non-structural protein 11; Short=nsp11 [Bovine enteric coronavirus (strain 98TXSF-110-ENT)]
Sequence ID: P0C6T8.1 Length: 4383
Range 1: 3247 to 3549
Score:303 bits(776), Expect:2e-92,
Method:Compositional matrix adjust.,
Identities:147/306(48%), Positives:196/306(64%), Gaps:3/306(0%)
Query 1 SGFRKMAFPSGKVEGCMVQVTCGTTTLNGLWLDDTVYCPRHVVCTAEDMLNPNYDDLLIR 60
SG KM P+ KVE C+V VT G TLNGLWLDD VYCPRHV+C+A DM NP+Y +LL R
Sbjct 3247 SGIVKMVNPTSKVEPCIVSVTYGNMTLNGLWLDDKVYCPRHVICSASDMTNPDYTNLLCR 3306
Query 61 KSNHSFLVQAGNVQLRVIGHSMQNCLLRLKVDTSNPKTPKYKFVRIQPGQTFSVLACYNG 120
++ F V + L V+ + MQ C+L L V N +TPKY F ++PG+TF+VLA YNG
Sbjct 3307 VTSSDFTVLFDRLSLTVMSYQMQGCMLVLTVTLQNSRTPKYTFGVVKPGETFTVLAAYNG 3366
Query 121 SPSGVYQCAMRPNHTIKGSFLNGSCGSVGFNIDYDCVSFCYMHHMELPTGVHAGTDLEGK 180
P G + MR ++TIKGSFL GSCGSVG+ + DCV F YMH +EL TG H GTD G
Sbjct 3367 KPQGAFHVTMRSSYTIKGSFLCGSCGSVGYVLMGDCVKFVYMHQLELSTGCHTGTDFNGD 3426
Query 181 FYGPFVDRQTAQAAGTDTTITLNVLAWLYAAVINGDRWFLNRFTTTLNDFNLVAMKYNYE 240
FYGP+ D Q Q D ++N +AWLYAA++N WF+ ++ DFN+ A+ +
Sbjct 3427 FYGPYKDAQVVQLPVQDYIQSVNFVAWLYAAILNNCNWFVQSDKCSVEDFNVWALSNGFS 3486
Query 241 PLTQDHVDILGPLSAQTGIAVLDMCAALKELLQNGMNGRTILGSTILEDEFTPFDVVRQC 300
+ D V + L++ TG+++ + AA+K L+NG GR I+GS EDE TP DV +Q
Sbjct 3487 QVKSDLV--IDALASMTGVSLETLLAAIKR-LKNGFQGRQIMGSCSFEDELTPSDVYQQL 3543
Query 301 SGVTFQ 306
+G+ Q
Sbjct 3544 AGIKLQ 3549
>RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Host translation inhibitor nsp1; Short=nsp1; AltName: Full=p28; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p65; Contains: RecName: Full=Papain-like proteinase nsp3; Short=PL-PRO; AltName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=p210; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; AltName: Full=Peptide HD2; AltName: Full=p44; Contains: RecName: Full=3C-like proteinase nsp5; Short=3CL-PRO; Short=3CLp; AltName: Full=M-PRO; AltName: Full=nsp5; AltName: Full=p27; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; AltName: Full=p10; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; AltName: Full=p22; Contains: RecName: Full=Viral protein genome-linked nsp9; AltName: Full=Non-structural protein 9; Short=nsp9; AltName: Full=RNA-capping enzyme subunit nsp9; AltName: Full=p12; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; AltName: Full=p15; Contains: RecName: Full=RNA-directed RNA polymerase nsp12; Short=Pol; Short=RdRp; AltName: Full=nsp12; AltName: Full=p100; Contains: RecName: Full=Helicase nsp13; Short=Hel; AltName: Full=nsp13; AltName: Full=p67; Contains: RecName: Full=Guanine-N7 methyltransferase nsp14; Short=ExoN; AltName: Full=nsp14; Contains: RecName: Full=Uridylate-specific endoribonuclease nsp15; AltName: Full=NendoU; AltName: Full=nsp15; AltName: Full=p35; Contains: RecName: Full=2'-O-methyltransferase nsp16; AltName: Full=nsp16 [Human coronavirus OC43]
Sequence ID: P0C6X6.1 Length: 7095
Range 1: 3247 to 3549
Score:303 bits(776), Expect:2e-92,
Method:Compositional matrix adjust.,
Identities:148/306(48%), Positives:196/306(64%), Gaps:3/306(0%)
Query 1 SGFRKMAFPSGKVEGCMVQVTCGTTTLNGLWLDDTVYCPRHVVCTAEDMLNPNYDDLLIR 60
SG KM P+ KVE C+V VT G TLNGLWLDD VYCPRHV+C+A DM NP+Y +LL R
Sbjct 3247 SGIVKMVNPTSKVEPCVVSVTYGNMTLNGLWLDDKVYCPRHVICSASDMTNPDYTNLLCR 3306
Query 61 KSNHSFLVQAGNVQLRVIGHSMQNCLLRLKVDTSNPKTPKYKFVRIQPGQTFSVLACYNG 120
++ F V + L V+ + M+ C+L L V N +TPKY F ++PG+TF+VLA YNG
Sbjct 3307 VTSSDFTVLFDRLSLTVMSYQMRGCMLVLTVTLQNSRTPKYTFGVVKPGETFTVLAAYNG 3366
Query 121 SPSGVYQCAMRPNHTIKGSFLNGSCGSVGFNIDYDCVSFCYMHHMELPTGVHAGTDLEGK 180
P G + MR ++TIKGSFL GSCGSVG+ I DCV F YMH +EL TG H GTD G
Sbjct 3367 KPQGAFHVTMRSSYTIKGSFLCGSCGSVGYVIMGDCVKFVYMHQLELSTGCHTGTDFNGD 3426
Query 181 FYGPFVDRQTAQAAGTDTTITLNVLAWLYAAVINGDRWFLNRFTTTLNDFNLVAMKYNYE 240
FYGP+ D Q Q D ++N LAWLYAA++N WF+ ++ DFN+ A+ +
Sbjct 3427 FYGPYKDAQVVQLPIQDYIQSVNFLAWLYAAILNNCNWFIQSDKCSVEDFNVWALSNGFS 3486
Query 241 PLTQDHVDILGPLSAQTGIAVLDMCAALKELLQNGMNGRTILGSTILEDEFTPFDVVRQC 300
+ D V + L++ TG+++ + AA+K L+NG GR I+GS EDE TP DV +Q
Sbjct 3487 QVKSDLV--IDALASMTGVSLETLLAAIKR-LKNGFQGRQIMGSCSFEDELTPSDVYQQL 3543
Query 301 SGVTFQ 306
+G+ Q
Sbjct 3544 AGIKLQ 3549
>RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Host translation inhibitor nsp1; Short=nsp1; AltName: Full=p28; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p65; Contains: RecName: Full=Papain-like proteinase nsp3; Short=PL-PRO; AltName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=p210; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; AltName: Full=Peptide HD2; AltName: Full=p44; Contains: RecName: Full=3C-like proteinase nsp5; Short=3CL-PRO; Short=3CLp; AltName: Full=M-PRO; AltName: Full=nsp5; AltName: Full=p27; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; AltName: Full=p10; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; AltName: Full=p22; Contains: RecName: Full=Viral protein genome-linked nsp9; AltName: Full=Non-structural protein 9; Short=nsp9; AltName: Full=RNA-capping enzyme subunit nsp9; AltName: Full=p12; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; AltName: Full=p15; Contains: RecName: Full=RNA-directed RNA polymerase nsp12; Short=Pol; Short=RdRp; AltName: Full=nsp12; AltName: Full=p100; Contains: RecName: Full=Helicase nsp13; Short=Hel; AltName: Full=nsp13; AltName: Full=p67; Contains: RecName: Full=Guanine-N7 methyltransferase nsp14; Short=ExoN; AltName: Full=nsp14; Contains: RecName: Full=Uridylate-specific endoribonuclease nsp15; AltName: Full=NendoU; AltName: Full=nsp15; AltName: Full=p35; Contains: RecName: Full=2'-O-methyltransferase; AltName: Full=nsp16 [Bovine enteric coronavirus (strain 98TXSF-110-ENT)]
Sequence ID: P0C6W7.1 Length: 7094
Range 1: 3247 to 3549
Score:303 bits(776), Expect:2e-92,
Method:Compositional matrix adjust.,
Identities:147/306(48%), Positives:196/306(64%), Gaps:3/306(0%)
Query 1 SGFRKMAFPSGKVEGCMVQVTCGTTTLNGLWLDDTVYCPRHVVCTAEDMLNPNYDDLLIR 60
SG KM P+ KVE C+V VT G TLNGLWLDD VYCPRHV+C+A DM NP+Y +LL R
Sbjct 3247 SGIVKMVNPTSKVEPCIVSVTYGNMTLNGLWLDDKVYCPRHVICSASDMTNPDYTNLLCR 3306
Query 61 KSNHSFLVQAGNVQLRVIGHSMQNCLLRLKVDTSNPKTPKYKFVRIQPGQTFSVLACYNG 120
++ F V + L V+ + MQ C+L L V N +TPKY F ++PG+TF+VLA YNG
Sbjct 3307 VTSSDFTVLFDRLSLTVMSYQMQGCMLVLTVTLQNSRTPKYTFGVVKPGETFTVLAAYNG 3366
Query 121 SPSGVYQCAMRPNHTIKGSFLNGSCGSVGFNIDYDCVSFCYMHHMELPTGVHAGTDLEGK 180
P G + MR ++TIKGSFL GSCGSVG+ + DCV F YMH +EL TG H GTD G
Sbjct 3367 KPQGAFHVTMRSSYTIKGSFLCGSCGSVGYVLMGDCVKFVYMHQLELSTGCHTGTDFNGD 3426
Query 181 FYGPFVDRQTAQAAGTDTTITLNVLAWLYAAVINGDRWFLNRFTTTLNDFNLVAMKYNYE 240
FYGP+ D Q Q D ++N +AWLYAA++N WF+ ++ DFN+ A+ +
Sbjct 3427 FYGPYKDAQVVQLPVQDYIQSVNFVAWLYAAILNNCNWFVQSDKCSVEDFNVWALSNGFS 3486
Query 241 PLTQDHVDILGPLSAQTGIAVLDMCAALKELLQNGMNGRTILGSTILEDEFTPFDVVRQC 300
+ D V + L++ TG+++ + AA+K L+NG GR I+GS EDE TP DV +Q
Sbjct 3487 QVKSDLV--IDALASMTGVSLETLLAAIKR-LKNGFQGRQIMGSCSFEDELTPSDVYQQL 3543
Query 301 SGVTFQ 306
+G+ Q
Sbjct 3544 AGIKLQ 3549
>RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Host translation inhibitor nsp1; Short=nsp1; AltName: Full=p28; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p65; Contains: RecName: Full=Papain-like proteinase nsp3; Short=PL-PRO; AltName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=p210; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; AltName: Full=Peptide HD2; AltName: Full=p44; Contains: RecName: Full=3C-like proteinase nsp5; Short=3CL-PRO; Short=3CLp; AltName: Full=M-PRO; AltName: Full=nsp5; AltName: Full=p27; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; AltName: Full=p10; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; AltName: Full=p22; Contains: RecName: Full=Viral protein genome-linked nsp9; AltName: Full=Non-structural protein 9; Short=nsp9; AltName: Full=RNA-capping enzyme subunit nsp9; AltName: Full=p12; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; AltName: Full=p15; Contains: RecName: Full=RNA-directed RNA polymerase nsp12; Short=Pol; Short=RdRp; AltName: Full=nsp12; AltName: Full=p100; Contains: RecName: Full=Helicase nsp13; Short=Hel; AltName: Full=nsp13; AltName: Full=p67; Contains: RecName: Full=Guanine-N7 methyltransferase nsp14; Short=ExoN; AltName: Full=nsp14; Contains: RecName: Full=Uridylate-specific endoribonuclease nsp15; AltName: Full=NendoU; AltName: Full=nsp15; AltName: Full=p35; Contains: RecName: Full=2'-O-methyltransferase nsp16; AltName: Full=nsp16 [Bovine respiratory coronavirus (strain 98TXSF-110-LUN)]
Sequence ID: P0C6W8.1 Length: 7094
Range 1: 3247 to 3549
Score:303 bits(775), Expect:2e-92,
Method:Compositional matrix adjust.,
Identities:147/306(48%), Positives:196/306(64%), Gaps:3/306(0%)
Query 1 SGFRKMAFPSGKVEGCMVQVTCGTTTLNGLWLDDTVYCPRHVVCTAEDMLNPNYDDLLIR 60
SG KM P+ KVE C+V VT G TLNGLWLDD VYCPRHV+C+A DM NP+Y +LL R
Sbjct 3247 SGIVKMVNPTSKVEPCIVSVTYGNMTLNGLWLDDKVYCPRHVICSASDMTNPDYTNLLCR 3306
Query 61 KSNHSFLVQAGNVQLRVIGHSMQNCLLRLKVDTSNPKTPKYKFVRIQPGQTFSVLACYNG 120
++ F V + L V+ + MQ C+L L V N +TPKY F ++PG+TF+VLA YNG
Sbjct 3307 VTSSDFTVLFDRLSLTVMSYQMQGCMLVLTVTLQNSRTPKYTFGVVKPGETFTVLAAYNG 3366
Query 121 SPSGVYQCAMRPNHTIKGSFLNGSCGSVGFNIDYDCVSFCYMHHMELPTGVHAGTDLEGK 180
P G + MR ++TIKGSFL GSCGSVG+ + DCV F YMH +EL TG H GTD G
Sbjct 3367 KPQGAFHVTMRSSYTIKGSFLCGSCGSVGYVLMGDCVKFVYMHQLELSTGCHTGTDFNGD 3426
Query 181 FYGPFVDRQTAQAAGTDTTITLNVLAWLYAAVINGDRWFLNRFTTTLNDFNLVAMKYNYE 240
FYGP+ D Q Q D ++N +AWLYAA++N WF+ ++ DFN+ A+ +
Sbjct 3427 FYGPYKDAQVVQLPVQDYIQSVNFVAWLYAAILNNCNWFVQSDKCSVEDFNVWALSNGFS 3486
Query 241 PLTQDHVDILGPLSAQTGIAVLDMCAALKELLQNGMNGRTILGSTILEDEFTPFDVVRQC 300
+ D V + L++ TG+++ + AA+K L+NG GR I+GS EDE TP DV +Q
Sbjct 3487 QVKSDLV--IDALASMTGVSLETLLAAIKR-LKNGFQGRQIMGSCSFEDELTPSDVYQQL 3543
Query 301 SGVTFQ 306
+G+ Q
Sbjct 3544 AGIKLQ 3549
>RecName: Full=Replicase polyprotein 1a; Short=pp1a; AltName: Full=ORF1a polyprotein; Contains: RecName: Full=Non-structural protein 1; Short=nsp1; AltName: Full=p28; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p65; Contains: RecName: Full=Papain-like protease nsp3; Short=PL-PRO; AltName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=PL1-PRO/PL2-PRO; AltName: Full=PL1/PL2; AltName: Full=PL2-PRO; AltName: Full=Papain-like proteinases 1/2; AltName: Full=p210; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; AltName: Full=Peptide HD2; AltName: Full=p44; Contains: RecName: Full=3C-like proteinase nsp5; Short=3CL-PRO; Short=3CLp; AltName: Full=M-PRO; AltName: Full=nsp5; AltName: Full=p27; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; AltName: Full=p10; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; AltName: Full=p22; Contains: RecName: Full=RNA-capping enzyme subunit nsp9; AltName: Full=Non-structural protein 9; Short=nsp9; AltName: Full=p12; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; AltName: Full=p15; Contains: RecName: Full=Non-structural protein 11; Short=nsp11 [Human coronavirus HKU1 (isolate N5)]
Sequence ID: P0C6U5.1 Length: 4421
Range 1: 3285 to 3587
Score:298 bits(764), Expect:8e-91,
Method:Compositional matrix adjust.,
Identities:147/306(48%), Positives:191/306(62%), Gaps:3/306(0%)
Query 1 SGFRKMAFPSGKVEGCMVQVTCGTTTLNGLWLDDTVYCPRHVVCTAEDMLNPNYDDLLIR 60
SG KM P+ K+E C+V VT G+ TLNGLWLDD VYCPRHV+C + +M P+Y LL R
Sbjct 3285 SGIVKMVSPTSKIEPCLVSVTYGSMTLNGLWLDDKVYCPRHVICLSSNMNEPDYSALLCR 3344
Query 61 KSNHSFLVQAGNVQLRVIGHSMQNCLLRLKVDTSNPKTPKYKFVRIQPGQTFSVLACYNG 120
+ F + +G + L V+ + MQ C L L V NP TPKY F ++PG+TF+VLA YNG
Sbjct 3345 VTLGDFTIMSGRMSLTVVSYQMQGCQLVLTVSLQNPYTPKYTFGVVKPGETFTVLAAYNG 3404
Query 121 SPSGVYQCAMRPNHTIKGSFLNGSCGSVGFNIDYDCVSFCYMHHMELPTGVHAGTDLEGK 180
P G + MR ++TIKGSFL GSCGSVG+ + D V F YMH +EL TG H GTD G
Sbjct 3405 RPQGAFHVTMRSSYTIKGSFLCGSCGSVGYVLTGDSVKFVYMHQLELSTGCHTGTDFNGN 3464
Query 181 FYGPFVDRQTAQAAGTDTTITLNVLAWLYAAVINGDRWFLNRFTTTLNDFNLVAMKYNYE 240
FYGP+ D Q Q D T+NV+AWLYAA++N WF+ ++ DFN+ AM +
Sbjct 3465 FYGPYRDAQVVQLPVKDYVQTVNVIAWLYAAILNNCAWFVQNDVCSIEDFNVWAMTNGFS 3524
Query 241 PLTQDHVDILGPLSAQTGIAVLDMCAALKELLQNGMNGRTILGSTILEDEFTPFDVVRQC 300
+ D V L L++ TG+++ + AA+K L G GR ILGS EDE P DV +Q
Sbjct 3525 QVKADLV--LDALASMTGVSIETLLAAIKRLYM-GFQGRQILGSCTFEDELAPSDVYQQL 3581
Query 301 SGVTFQ 306
+GV Q
Sbjct 3582 AGVKLQ 3587
>RecName: Full=Replicase polyprotein 1a; Short=pp1a; AltName: Full=ORF1a polyprotein; Contains: RecName: Full=Non-structural protein 1; Short=nsp1; AltName: Full=p28; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p65; Contains: RecName: Full=Papain-like protease nsp3; Short=PL-PRO; AltName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=PL1-PRO/PL2-PRO; AltName: Full=PL1/PL2; AltName: Full=PL2-PRO; AltName: Full=Papain-like proteinases 1/2; AltName: Full=p210; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; AltName: Full=Peptide HD2; AltName: Full=p44; Contains: RecName: Full=3C-like proteinase nsp5; Short=3CL-PRO; Short=3CLp; AltName: Full=M-PRO; AltName: Full=nsp5; AltName: Full=p27; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; AltName: Full=p10; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; AltName: Full=p22; Contains: RecName: Full=RNA-capping enzyme subunit nsp9; AltName: Full=Non-structural protein 9; Short=nsp9; AltName: Full=p12; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; AltName: Full=p15; Contains: RecName: Full=Non-structural protein 11; Short=nsp11 [Human coronavirus HKU1 (isolate N1)]
Sequence ID: P0C6U3.1 Length: 4471
Range 1: 3335 to 3637
Score:298 bits(763), Expect:1e-90,
Method:Compositional matrix adjust.,
Identities:147/306(48%), Positives:191/306(62%), Gaps:3/306(0%)
Query 1 SGFRKMAFPSGKVEGCMVQVTCGTTTLNGLWLDDTVYCPRHVVCTAEDMLNPNYDDLLIR 60
SG KM P+ K+E C+V VT G+ TLNGLWLDD VYCPRHV+C++ +M P+Y LL R
Sbjct 3335 SGIVKMVSPTSKIEPCIVSVTYGSMTLNGLWLDDKVYCPRHVICSSSNMNEPDYSALLCR 3394
Query 61 KSNHSFLVQAGNVQLRVIGHSMQNCLLRLKVDTSNPKTPKYKFVRIQPGQTFSVLACYNG 120
+ F + +G + L V+ + MQ C L L V NP TPKY F ++PG+TF+VLA YNG
Sbjct 3395 VTLGDFTIMSGRMSLTVVSYQMQGCQLVLTVSLQNPYTPKYTFGNVKPGETFTVLAAYNG 3454
Query 121 SPSGVYQCAMRPNHTIKGSFLNGSCGSVGFNIDYDCVSFCYMHHMELPTGVHAGTDLEGK 180
P G + MR ++TIKGSFL GSCGSVG+ + D V F YMH +EL TG H GTD G
Sbjct 3455 RPQGAFHVTMRSSYTIKGSFLCGSCGSVGYVLTGDSVKFVYMHQLELSTGCHTGTDFTGN 3514
Query 181 FYGPFVDRQTAQAAGTDTTITLNVLAWLYAAVINGDRWFLNRFTTTLNDFNLVAMKYNYE 240
FYGP+ D Q Q D T+NV+AWLYAA++N WF+ + DFN+ AM +
Sbjct 3515 FYGPYRDAQVVQLPVKDYVQTVNVIAWLYAAILNNCAWFVQNDVCSTEDFNVWAMANGFS 3574
Query 241 PLTQDHVDILGPLSAQTGIAVLDMCAALKELLQNGMNGRTILGSTILEDEFTPFDVVRQC 300
+ D V L L++ TG+++ + AA+K L G GR ILGS EDE P DV +Q
Sbjct 3575 QVKADLV--LDALASMTGVSIETLLAAIKRLYM-GFQGRQILGSCTFEDELAPSDVYQQL 3631
Query 301 SGVTFQ 306
+GV Q
Sbjct 3632 AGVKLQ 3637
>RecName: Full=Replicase polyprotein 1a; Short=pp1a; AltName: Full=ORF1a polyprotein; Contains: RecName: Full=Non-structural protein 1; Short=nsp1; AltName: Full=p28; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p65; Contains: RecName: Full=Papain-like protease nsp3; Short=PL-PRO; AltName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=PL1-PRO/PL2-PRO; AltName: Full=PL1/PL2; AltName: Full=PL2-PRO; AltName: Full=Papain-like proteinases 1/2; AltName: Full=p210; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; AltName: Full=Peptide HD2; AltName: Full=p44; Contains: RecName: Full=3C-like proteinase nsp5; Short=3CL-PRO; Short=3CLp; AltName: Full=M-PRO; AltName: Full=nsp5; AltName: Full=p27; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; AltName: Full=p10; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; AltName: Full=p22; Contains: RecName: Full=RNA-capping enzyme subunit nsp9; AltName: Full=Non-structural protein 9; Short=nsp9; AltName: Full=p12; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; AltName: Full=p15; Contains: RecName: Full=Non-structural protein 11; Short=nsp11 [Human coronavirus HKU1 (isolate N2)]
Sequence ID: P0C6U4.1 Length: 4441
Range 1: 3305 to 3607
Score:298 bits(763), Expect:1e-90,
Method:Compositional matrix adjust.,
Identities:147/306(48%), Positives:191/306(62%), Gaps:3/306(0%)
Query 1 SGFRKMAFPSGKVEGCMVQVTCGTTTLNGLWLDDTVYCPRHVVCTAEDMLNPNYDDLLIR 60
SG KM P+ K+E C+V VT G+ TLNGLWLDD VYCPRHV+C + +M P+Y LL R
Sbjct 3305 SGIVKMVSPTSKIEPCIVSVTYGSMTLNGLWLDDKVYCPRHVICLSSNMNEPDYSALLCR 3364
Query 61 KSNHSFLVQAGNVQLRVIGHSMQNCLLRLKVDTSNPKTPKYKFVRIQPGQTFSVLACYNG 120
+ F + +G + L V+ + MQ C L L V NP TPKY F ++PG+TF+VLA YNG
Sbjct 3365 VTLGDFTIMSGRMSLTVVSYQMQGCQLVLTVSLQNPYTPKYTFGVVKPGETFTVLAAYNG 3424
Query 121 SPSGVYQCAMRPNHTIKGSFLNGSCGSVGFNIDYDCVSFCYMHHMELPTGVHAGTDLEGK 180
P G + MR ++TIKGSFL GSCGSVG+ + D V F YMH +EL TG H GTD G
Sbjct 3425 RPQGAFHVTMRSSYTIKGSFLCGSCGSVGYVLTGDSVKFVYMHQLELSTGCHTGTDFTGN 3484
Query 181 FYGPFVDRQTAQAAGTDTTITLNVLAWLYAAVINGDRWFLNRFTTTLNDFNLVAMKYNYE 240
FYGP+ D Q Q D T+NV+AWLYAA++N WF+ ++ DFN+ AM +
Sbjct 3485 FYGPYRDAQVVQLPVKDYVQTVNVIAWLYAAILNNCAWFVQNDVCSIEDFNVWAMTNGFS 3544
Query 241 PLTQDHVDILGPLSAQTGIAVLDMCAALKELLQNGMNGRTILGSTILEDEFTPFDVVRQC 300
+ D V L L++ TG+++ + AA+K L G GR ILGS EDE P DV +Q
Sbjct 3545 QVKADLV--LDALASMTGVSIETLLAAIKRLYM-GFQGRQILGSCTFEDELAPSDVYQQL 3601
Query 301 SGVTFQ 306
+GV Q
Sbjct 3602 AGVKLQ 3607
>RecName: Full=Replicase polyprotein 1a; Short=pp1a; AltName: Full=ORF1a polyprotein; Contains: RecName: Full=Non-structural protein 1; Short=nsp1; AltName: Full=p28; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p65; Contains: RecName: Full=Papain-like protease nsp3; Short=PL-PRO; AltName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=PL1-PRO/PL2-PRO; AltName: Full=PL1/PL2; AltName: Full=PL2-PRO; AltName: Full=Papain-like proteinases 1/2; AltName: Full=p210; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; AltName: Full=Peptide HD2; AltName: Full=p44; Contains: RecName: Full=3C-like proteinase nsp5; Short=3CL-PRO; Short=3CLp; AltName: Full=M-PRO; AltName: Full=nsp5; AltName: Full=p27; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; AltName: Full=p10; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; AltName: Full=p22; Contains: RecName: Full=RNA-capping enzyme subunit nsp9; AltName: Full=Non-structural protein 9; Short=nsp9; AltName: Full=p12; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; AltName: Full=p15; Contains: RecName: Full=Non-structural protein 11; Short=nsp11 [Bovine coronavirus Mebus]
Sequence ID: P0C6U0.1 Length: 4383
Range 1: 3247 to 3549
Score:298 bits(763), Expect:1e-90,
Method:Compositional matrix adjust.,
Identities:146/306(48%), Positives:194/306(63%), Gaps:3/306(0%)
Query 1 SGFRKMAFPSGKVEGCMVQVTCGTTTLNGLWLDDTVYCPRHVVCTAEDMLNPNYDDLLIR 60
SG KM P+ KVE C+V VT G TLNGLWL D VYCPRHV+C+A DM NP+Y +LL R
Sbjct 3247 SGIVKMVNPTSKVEPCIVSVTYGNMTLNGLWLGDKVYCPRHVICSASDMTNPDYTNLLCR 3306
Query 61 KSNHSFLVQAGNVQLRVIGHSMQNCLLRLKVDTSNPKTPKYKFVRIQPGQTFSVLACYNG 120
++ F V + L V+ + MQ C+L L V N +TPKY F ++PG+TF+VLA YNG
Sbjct 3307 VTSSDFTVLFDRLSLTVMSYQMQGCMLVLTVTLQNSRTPKYTFGVVKPGETFTVLAAYNG 3366
Query 121 SPSGVYQCAMRPNHTIKGSFLNGSCGSVGFNIDYDCVSFCYMHHMELPTGVHAGTDLEGK 180
P G + MR ++TIKGSFL GSCGSV + I DCV F YMH +EL TG H GTD G
Sbjct 3367 KPQGAFHVTMRSSYTIKGSFLCGSCGSVVYVIMGDCVKFVYMHQLELSTGCHTGTDFNGD 3426
Query 181 FYGPFVDRQTAQAAGTDTTITLNVLAWLYAAVINGDRWFLNRFTTTLNDFNLVAMKYNYE 240
FYGP+ D Q Q D ++N +AWLYAA++N WF+ ++ DFN+ A+ +
Sbjct 3427 FYGPYKDAQVVQLPVQDYIQSVNFVAWLYAAILNNCNWFVQSDKCSVEDFNVWALSNGFS 3486
Query 241 PLTQDHVDILGPLSAQTGIAVLDMCAALKELLQNGMNGRTILGSTILEDEFTPFDVVRQC 300
+ D V + L++ TG+++ + AA+K L+NG GR I+GS EDE TP DV +Q
Sbjct 3487 QVKSDLV--IDALASMTGVSLETLLAAIKH-LKNGFQGRQIMGSCSFEDELTPSDVYQQL 3543
Query 301 SGVTFQ 306
+G+ Q
Sbjct 3544 AGIKLQ 3549
>RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Host translation inhibitor nsp1; Short=nsp1; AltName: Full=p28; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p65; Contains: RecName: Full=Papain-like proteinase nsp3; Short=PL-PRO; AltName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=p210; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; AltName: Full=Peptide HD2; AltName: Full=p44; Contains: RecName: Full=3C-like proteinase nsp5; Short=3CL-PRO; Short=3CLp; AltName: Full=M-PRO; AltName: Full=nsp5; AltName: Full=p27; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; AltName: Full=p10; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; AltName: Full=p22; Contains: RecName: Full=Viral protein genome-linked nsp9; AltName: Full=Non-structural protein 9; Short=nsp9; AltName: Full=RNA-capping enzyme subunit nsp9; AltName: Full=p12; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; AltName: Full=p15; Contains: RecName: Full=RNA-directed RNA polymerase nsp12; Short=Pol; Short=RdRp; AltName: Full=nsp12; AltName: Full=p100; Contains: RecName: Full=Helicase nsp13; Short=Hel; AltName: Full=nsp13; AltName: Full=p67; Contains: RecName: Full=Guanine-N7 methyltransferase nsp14; Short=ExoN; AltName: Full=nsp14; Contains: RecName: Full=Uridylate-specific endoribonuclease nsp15; AltName: Full=NendoU; AltName: Full=nsp15; AltName: Full=p35; Contains: RecName: Full=2'-O-methyltransferase nsp16; AltName: Full=nsp16 [Human coronavirus HKU1 (isolate N5)]
Sequence ID: P0C6X4.1 Length: 7132
Range 1: 3285 to 3587
Score:298 bits(763), Expect:1e-90,
Method:Compositional matrix adjust.,
Identities:147/306(48%), Positives:191/306(62%), Gaps:3/306(0%)
Query 1 SGFRKMAFPSGKVEGCMVQVTCGTTTLNGLWLDDTVYCPRHVVCTAEDMLNPNYDDLLIR 60
SG KM P+ K+E C+V VT G+ TLNGLWLDD VYCPRHV+C + +M P+Y LL R
Sbjct 3285 SGIVKMVSPTSKIEPCLVSVTYGSMTLNGLWLDDKVYCPRHVICLSSNMNEPDYSALLCR 3344
Query 61 KSNHSFLVQAGNVQLRVIGHSMQNCLLRLKVDTSNPKTPKYKFVRIQPGQTFSVLACYNG 120
+ F + +G + L V+ + MQ C L L V NP TPKY F ++PG+TF+VLA YNG
Sbjct 3345 VTLGDFTIMSGRMSLTVVSYQMQGCQLVLTVSLQNPYTPKYTFGVVKPGETFTVLAAYNG 3404
Query 121 SPSGVYQCAMRPNHTIKGSFLNGSCGSVGFNIDYDCVSFCYMHHMELPTGVHAGTDLEGK 180
P G + MR ++TIKGSFL GSCGSVG+ + D V F YMH +EL TG H GTD G
Sbjct 3405 RPQGAFHVTMRSSYTIKGSFLCGSCGSVGYVLTGDSVKFVYMHQLELSTGCHTGTDFNGN 3464
Query 181 FYGPFVDRQTAQAAGTDTTITLNVLAWLYAAVINGDRWFLNRFTTTLNDFNLVAMKYNYE 240
FYGP+ D Q Q D T+NV+AWLYAA++N WF+ ++ DFN+ AM +
Sbjct 3465 FYGPYRDAQVVQLPVKDYVQTVNVIAWLYAAILNNCAWFVQNDVCSIEDFNVWAMTNGFS 3524
Query 241 PLTQDHVDILGPLSAQTGIAVLDMCAALKELLQNGMNGRTILGSTILEDEFTPFDVVRQC 300
+ D V L L++ TG+++ + AA+K L G GR ILGS EDE P DV +Q
Sbjct 3525 QVKADLV--LDALASMTGVSIETLLAAIKRLYM-GFQGRQILGSCTFEDELAPSDVYQQL 3581
Query 301 SGVTFQ 306
+GV Q
Sbjct 3582 AGVKLQ 3587
>RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Host translation inhibitor nsp1; Short=nsp1; AltName: Full=p28; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p65; Contains: RecName: Full=Papain-like proteinase nsp3; Short=PL-PRO; AltName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=p210; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; AltName: Full=Peptide HD2; AltName: Full=p44; Contains: RecName: Full=3C-like proteinase nsp5; Short=3CL-PRO; Short=3CLp; AltName: Full=M-PRO; AltName: Full=nsp5; AltName: Full=p27; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; AltName: Full=p10; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; AltName: Full=p22; Contains: RecName: Full=Viral protein genome-linked nsp9; AltName: Full=Non-structural protein 9; Short=nsp9; AltName: Full=RNA-capping enzyme subunit nsp9; AltName: Full=p12; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; AltName: Full=p15; Contains: RecName: Full=RNA-directed RNA polymerase nsp12; Short=Pol; Short=RdRp; AltName: Full=nsp12; AltName: Full=p100; Contains: RecName: Full=Helicase nsp13; Short=Hel; AltName: Full=nsp13; AltName: Full=p67; Contains: RecName: Full=Guanine-N7 methyltransferase nsp14; Short=ExoN; AltName: Full=nsp14; Contains: RecName: Full=Uridylate-specific endoribonuclease nsp15; AltName: Full=NendoU; AltName: Full=nsp15; AltName: Full=p35; Contains: RecName: Full=2'-O-methyltransferase nsp16; AltName: Full=nsp16 [Human coronavirus HKU1 (isolate N1)]
Sequence ID: P0C6X2.1 Length: 7182
Range 1: 3335 to 3637
Score:298 bits(763), Expect:1e-90,
Method:Compositional matrix adjust.,
Identities:147/306(48%), Positives:191/306(62%), Gaps:3/306(0%)
Query 1 SGFRKMAFPSGKVEGCMVQVTCGTTTLNGLWLDDTVYCPRHVVCTAEDMLNPNYDDLLIR 60
SG KM P+ K+E C+V VT G+ TLNGLWLDD VYCPRHV+C++ +M P+Y LL R
Sbjct 3335 SGIVKMVSPTSKIEPCIVSVTYGSMTLNGLWLDDKVYCPRHVICSSSNMNEPDYSALLCR 3394
Query 61 KSNHSFLVQAGNVQLRVIGHSMQNCLLRLKVDTSNPKTPKYKFVRIQPGQTFSVLACYNG 120
+ F + +G + L V+ + MQ C L L V NP TPKY F ++PG+TF+VLA YNG
Sbjct 3395 VTLGDFTIMSGRMSLTVVSYQMQGCQLVLTVSLQNPYTPKYTFGNVKPGETFTVLAAYNG 3454
Query 121 SPSGVYQCAMRPNHTIKGSFLNGSCGSVGFNIDYDCVSFCYMHHMELPTGVHAGTDLEGK 180
P G + MR ++TIKGSFL GSCGSVG+ + D V F YMH +EL TG H GTD G
Sbjct 3455 RPQGAFHVTMRSSYTIKGSFLCGSCGSVGYVLTGDSVKFVYMHQLELSTGCHTGTDFTGN 3514
Query 181 FYGPFVDRQTAQAAGTDTTITLNVLAWLYAAVINGDRWFLNRFTTTLNDFNLVAMKYNYE 240
FYGP+ D Q Q D T+NV+AWLYAA++N WF+ + DFN+ AM +
Sbjct 3515 FYGPYRDAQVVQLPVKDYVQTVNVIAWLYAAILNNCAWFVQNDVCSTEDFNVWAMANGFS 3574
Query 241 PLTQDHVDILGPLSAQTGIAVLDMCAALKELLQNGMNGRTILGSTILEDEFTPFDVVRQC 300
+ D V L L++ TG+++ + AA+K L G GR ILGS EDE P DV +Q
Sbjct 3575 QVKADLV--LDALASMTGVSIETLLAAIKRLYM-GFQGRQILGSCTFEDELAPSDVYQQL 3631
Query 301 SGVTFQ 306
+GV Q
Sbjct 3632 AGVKLQ 3637
>RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Host translation inhibitor nsp1; Short=nsp1; AltName: Full=p28; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p65; Contains: RecName: Full=Papain-like proteinase nsp3; Short=PL-PRO; AltName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=p210; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; AltName: Full=Peptide HD2; AltName: Full=p44; Contains: RecName: Full=3C-like proteinase nsp5; Short=3CL-PRO; Short=3CLp; AltName: Full=M-PRO; AltName: Full=nsp5; AltName: Full=p27; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; AltName: Full=p10; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; AltName: Full=p22; Contains: RecName: Full=Viral protein genome-linked nsp9; AltName: Full=Non-structural protein 9; Short=nsp9; AltName: Full=RNA-capping enzyme subunit nsp9; AltName: Full=p12; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; AltName: Full=p15; Contains: RecName: Full=RNA-directed RNA polymerase nsp12; Short=Pol; Short=RdRp; AltName: Full=nsp12; AltName: Full=p100; Contains: RecName: Full=Helicase nsp13; Short=Hel; AltName: Full=nsp13; AltName: Full=p67; Contains: RecName: Full=Guanine-N7 methyltransferase nsp14; Short=ExoN; AltName: Full=nsp14; Contains: RecName: Full=Uridylate-specific endoribonuclease nsp15; AltName: Full=NendoU; AltName: Full=nsp15; AltName: Full=p35; Contains: RecName: Full=2'-O-methyltransferase nsp16; AltName: Full=nsp16 [Bovine coronavirus Mebus]
Sequence ID: P0C6W9.1 Length: 7094
Range 1: 3247 to 3549
Score:297 bits(761), Expect:2e-90,
Method:Compositional matrix adjust.,
Identities:146/306(48%), Positives:194/306(63%), Gaps:3/306(0%)
Query 1 SGFRKMAFPSGKVEGCMVQVTCGTTTLNGLWLDDTVYCPRHVVCTAEDMLNPNYDDLLIR 60
SG KM P+ KVE C+V VT G TLNGLWL D VYCPRHV+C+A DM NP+Y +LL R
Sbjct 3247 SGIVKMVNPTSKVEPCIVSVTYGNMTLNGLWLGDKVYCPRHVICSASDMTNPDYTNLLCR 3306
Query 61 KSNHSFLVQAGNVQLRVIGHSMQNCLLRLKVDTSNPKTPKYKFVRIQPGQTFSVLACYNG 120
++ F V + L V+ + MQ C+L L V N +TPKY F ++PG+TF+VLA YNG
Sbjct 3307 VTSSDFTVLFDRLSLTVMSYQMQGCMLVLTVTLQNSRTPKYTFGVVKPGETFTVLAAYNG 3366
Query 121 SPSGVYQCAMRPNHTIKGSFLNGSCGSVGFNIDYDCVSFCYMHHMELPTGVHAGTDLEGK 180
P G + MR ++TIKGSFL GSCGSV + I DCV F YMH +EL TG H GTD G
Sbjct 3367 KPQGAFHVTMRSSYTIKGSFLCGSCGSVVYVIMGDCVKFVYMHQLELSTGCHTGTDFNGD 3426
Query 181 FYGPFVDRQTAQAAGTDTTITLNVLAWLYAAVINGDRWFLNRFTTTLNDFNLVAMKYNYE 240
FYGP+ D Q Q D ++N +AWLYAA++N WF+ ++ DFN+ A+ +
Sbjct 3427 FYGPYKDAQVVQLPVQDYIQSVNFVAWLYAAILNNCNWFVQSDKCSVEDFNVWALSNGFS 3486
Query 241 PLTQDHVDILGPLSAQTGIAVLDMCAALKELLQNGMNGRTILGSTILEDEFTPFDVVRQC 300
+ D V + L++ TG+++ + AA+K L+NG GR I+GS EDE TP DV +Q
Sbjct 3487 QVKSDLV--IDALASMTGVSLETLLAAIKH-LKNGFQGRQIMGSCSFEDELTPSDVYQQL 3543
Query 301 SGVTFQ 306
+G+ Q
Sbjct 3544 AGIKLQ 3549
>RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Host translation inhibitor nsp1; Short=nsp1; AltName: Full=p28; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p65; Contains: RecName: Full=Papain-like proteinase nsp3; Short=PL-PRO; AltName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=p210; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; AltName: Full=Peptide HD2; AltName: Full=p44; Contains: RecName: Full=3C-like proteinase nsp5; Short=3CL-PRO; Short=3CLp; AltName: Full=M-PRO; AltName: Full=nsp5; AltName: Full=p27; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; AltName: Full=p10; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; AltName: Full=p22; Contains: RecName: Full=Viral protein genome-linked nsp9; AltName: Full=Non-structural protein 9; Short=nsp9; AltName: Full=RNA-capping enzyme subunit nsp9; AltName: Full=p12; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; AltName: Full=p15; Contains: RecName: Full=RNA-directed RNA polymerase nsp12; Short=Pol; Short=RdRp; AltName: Full=nsp12; AltName: Full=p100; Contains: RecName: Full=Helicase nsp13; Short=Hel; AltName: Full=nsp13; AltName: Full=p67; Contains: RecName: Full=Guanine-N7 methyltransferase nsp14; Short=ExoN; AltName: Full=nsp14; Contains: RecName: Full=Uridylate-specific endoribonuclease nsp15; AltName: Full=NendoU; AltName: Full=nsp15; AltName: Full=p35; Contains: RecName: Full=2'-O-methyltransferase nsp16; AltName: Full=nsp16 [Human coronavirus HKU1 (isolate N2)]
Sequence ID: P0C6X3.1 Length: 7152
Range 1: 3305 to 3607
Score:297 bits(761), Expect:2e-90,
Method:Compositional matrix adjust.,
Identities:147/306(48%), Positives:191/306(62%), Gaps:3/306(0%)
Query 1 SGFRKMAFPSGKVEGCMVQVTCGTTTLNGLWLDDTVYCPRHVVCTAEDMLNPNYDDLLIR 60
SG KM P+ K+E C+V VT G+ TLNGLWLDD VYCPRHV+C + +M P+Y LL R
Sbjct 3305 SGIVKMVSPTSKIEPCIVSVTYGSMTLNGLWLDDKVYCPRHVICLSSNMNEPDYSALLCR 3364
Query 61 KSNHSFLVQAGNVQLRVIGHSMQNCLLRLKVDTSNPKTPKYKFVRIQPGQTFSVLACYNG 120
+ F + +G + L V+ + MQ C L L V NP TPKY F ++PG+TF+VLA YNG
Sbjct 3365 VTLGDFTIMSGRMSLTVVSYQMQGCQLVLTVSLQNPYTPKYTFGVVKPGETFTVLAAYNG 3424
Query 121 SPSGVYQCAMRPNHTIKGSFLNGSCGSVGFNIDYDCVSFCYMHHMELPTGVHAGTDLEGK 180
P G + MR ++TIKGSFL GSCGSVG+ + D V F YMH +EL TG H GTD G
Sbjct 3425 RPQGAFHVTMRSSYTIKGSFLCGSCGSVGYVLTGDSVKFVYMHQLELSTGCHTGTDFTGN 3484
Query 181 FYGPFVDRQTAQAAGTDTTITLNVLAWLYAAVINGDRWFLNRFTTTLNDFNLVAMKYNYE 240
FYGP+ D Q Q D T+NV+AWLYAA++N WF+ ++ DFN+ AM +
Sbjct 3485 FYGPYRDAQVVQLPVKDYVQTVNVIAWLYAAILNNCAWFVQNDVCSIEDFNVWAMTNGFS 3544
Query 241 PLTQDHVDILGPLSAQTGIAVLDMCAALKELLQNGMNGRTILGSTILEDEFTPFDVVRQC 300
+ D V L L++ TG+++ + AA+K L G GR ILGS EDE P DV +Q
Sbjct 3545 QVKADLV--LDALASMTGVSIETLLAAIKRLYM-GFQGRQILGSCTFEDELAPSDVYQQL 3601
Query 301 SGVTFQ 306
+GV Q
Sbjct 3602 AGVKLQ 3607
>RecName: Full=Replicase polyprotein 1a; Short=pp1a; AltName: Full=ORF1a polyprotein; Contains: RecName: Full=Non-structural protein 1; Short=nsp1; AltName: Full=p9; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p87; Contains: RecName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=PL1-PRO/PL2-PRO; AltName: Full=PLP1/PLP2; AltName: Full=Papain-like proteinases 1/2; AltName: Full=p195; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; AltName: Full=Peptide HD2; Contains: RecName: Full=3C-like proteinase; Short=3CL-PRO; Short=3CLp; AltName: Full=M-PRO; AltName: Full=nsp5; AltName: Full=p34; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; AltName: Full=p5; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; AltName: Full=p23; Contains: RecName: Full=Non-structural protein 9; Short=nsp9; AltName: Full=p12; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; AltName: Full=p14; Contains: RecName: Full=Non-structural protein 11; Short=nsp11 [Scotophilus bat coronavirus 512]
Sequence ID: P0C6F6.1 Length: 4128
Range 1: 3013 to 3314
Score:276 bits(705), Expect:7e-83,
Method:Compositional matrix adjust.,
Identities:143/307(47%), Positives:203/307(66%), Gaps:6/307(1%)
Query 1 SGFRKMAFPSGKVEGCMVQVTCGTTTLNGLWLDDTVYCPRHVVCTAEDMLNP-NYDDLLI 59
+G RKMA PSG VEGC+V+V+ G TLNGLWL DTV CPRHV+ A + N +YD +
Sbjct 3013 AGLRKMAQPSGIVEGCIVRVSYGNLTLNGLWLGDTVICPRHVI--ASNTTNVIDYDHAMS 3070
Query 60 RKSNHSFLVQAGNVQLRVIGHSMQNCLLRLKVDTSNPKTPKYKFVRIQPGQTFSVLACYN 119
H+F + +GN+ L VI SM+ LL +KV+ SN TP Y + ++PG +F++LACY+
Sbjct 3071 LVRLHNFSISSGNMFLGVISASMRGTLLHIKVNQSNVNTPNYTYKVLKPGDSFNILACYD 3130
Query 120 GSPSGVYQCAMRPNHTIKGSFLNGSCGSVGFNIDYDCVSFCYMHHMELPTGVHAGTDLEG 179
GS +GVY MR N+TI+GSF++G+CGS G+NI+ V FCYMHH+EL +G H G+D++G
Sbjct 3131 GSAAGVYGVNMRTNYTIRGSFISGACGSPGYNINNGVVEFCYMHHLELGSGCHVGSDMDG 3190
Query 180 KFYGPFVDRQTAQAAGTDTTITLNVLAWLYAAVINGDRWFLNRFTTTLNDFNLVAMKYNY 239
YG + D+ T Q G +T NV +WLY A+INGDRW+L+ + ++ +N A++
Sbjct 3191 TMYGKYEDQPTLQIEGASNLVTENVCSWLYGALINGDRWWLSSVSVGVDTYNEWALRNGM 3250
Query 240 EPLTQDHVDILGPLSAQTGIAVLDMCAALKELLQNGMNGRTILGSTILEDEFTPFDVVRQ 299
L +VD L A+TG+ V + A++++L N G++ILG T L DEFT +VV+Q
Sbjct 3251 TAL--KNVDCFSLLVAKTGVDVGRLLASIQKLHGN-FGGKSILGCTSLCDEFTLSEVVKQ 3307
Query 300 CSGVTFQ 306
GVT Q
Sbjct 3308 MYGVTLQ 3314
>RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Non-structural protein 1; Short=nsp1; AltName: Full=p9; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p87; Contains: RecName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=PL1-PRO/PL2-PRO; AltName: Full=PLP1/PLP2; AltName: Full=Papain-like proteinases 1/2; AltName: Full=p195; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; AltName: Full=Peptide HD2; Contains: RecName: Full=3C-like proteinase; Short=3CL-PRO; Short=3CLp; AltName: Full=M-PRO; AltName: Full=nsp5; AltName: Full=p34; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; AltName: Full=p5; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; AltName: Full=p23; Contains: RecName: Full=Viral protein genome-linked nsp9; AltName: Full=Non-structural protein 9; Short=nsp9; AltName: Full=RNA-capping enzyme subunit nsp9; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; AltName: Full=p14; Contains: RecName: Full=RNA-directed RNA polymerase nsp12; Short=Pol; Short=RdRp; AltName: Full=nsp12; AltName: Full=p100; Contains: RecName: Full=Helicase; Short=Hel; AltName: Full=nsp13; AltName: Full=p66; AltName: Full=p66-HEL; Contains: RecName: Full=Exoribonuclease; Short=ExoN; AltName: Full=nsp14; Contains: RecName: Full=Uridylate-specific endoribonuclease; AltName: Full=NendoU; AltName: Full=nsp15; Contains: RecName: Full=Putative 2'-O-methyl transferase; AltName: Full=nsp16 [Scotophilus bat coronavirus 512]
Sequence ID: P0C6W0.1 Length: 6793
Range 1: 3013 to 3314
Score:275 bits(703), Expect:1e-82,
Method:Compositional matrix adjust.,
Identities:143/307(47%), Positives:203/307(66%), Gaps:6/307(1%)
Query 1 SGFRKMAFPSGKVEGCMVQVTCGTTTLNGLWLDDTVYCPRHVVCTAEDMLNP-NYDDLLI 59
+G RKMA PSG VEGC+V+V+ G TLNGLWL DTV CPRHV+ A + N +YD +
Sbjct 3013 AGLRKMAQPSGIVEGCIVRVSYGNLTLNGLWLGDTVICPRHVI--ASNTTNVIDYDHAMS 3070
Query 60 RKSNHSFLVQAGNVQLRVIGHSMQNCLLRLKVDTSNPKTPKYKFVRIQPGQTFSVLACYN 119
H+F + +GN+ L VI SM+ LL +KV+ SN TP Y + ++PG +F++LACY+
Sbjct 3071 LVRLHNFSISSGNMFLGVISASMRGTLLHIKVNQSNVNTPNYTYKVLKPGDSFNILACYD 3130
Query 120 GSPSGVYQCAMRPNHTIKGSFLNGSCGSVGFNIDYDCVSFCYMHHMELPTGVHAGTDLEG 179
GS +GVY MR N+TI+GSF++G+CGS G+NI+ V FCYMHH+EL +G H G+D++G
Sbjct 3131 GSAAGVYGVNMRTNYTIRGSFISGACGSPGYNINNGVVEFCYMHHLELGSGCHVGSDMDG 3190
Query 180 KFYGPFVDRQTAQAAGTDTTITLNVLAWLYAAVINGDRWFLNRFTTTLNDFNLVAMKYNY 239
YG + D+ T Q G +T NV +WLY A+INGDRW+L+ + ++ +N A++
Sbjct 3191 TMYGKYEDQPTLQIEGASNLVTENVCSWLYGALINGDRWWLSSVSVGVDTYNEWALRNGM 3250
Query 240 EPLTQDHVDILGPLSAQTGIAVLDMCAALKELLQNGMNGRTILGSTILEDEFTPFDVVRQ 299
L +VD L A+TG+ V + A++++L N G++ILG T L DEFT +VV+Q
Sbjct 3251 TAL--KNVDCFSLLVAKTGVDVGRLLASIQKLHGN-FGGKSILGCTSLCDEFTLSEVVKQ 3307
Query 300 CSGVTFQ 306
GVT Q
Sbjct 3308 MYGVTLQ 3314
>RecName: Full=Replicase polyprotein 1a; Short=pp1a; AltName: Full=ORF1a polyprotein; Contains: RecName: Full=Non-structural protein 1; Short=nsp1; AltName: Full=p9; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p87; Contains: RecName: Full=Papain-like protease nsp3; AltName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=PL1-PRO/PL2-PRO; AltName: Full=PLP1/PLP2; AltName: Full=Papain-like proteinase; Short=PL-PRO; AltName: Full=p195; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; AltName: Full=Peptide HD2; Contains: RecName: Full=3C-like proteinase nsp5; Short=3CL-PRO; Short=3CLp; AltName: Full=M-PRO; AltName: Full=nsp5; AltName: Full=p34; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; AltName: Full=p5; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; AltName: Full=p23; Contains: RecName: Full=RNA-capping enzyme subunit nsp9; AltName: Full=Non-structural protein 9; Short=nsp9; AltName: Full=p12; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; AltName: Full=p14; Contains: RecName: Full=Non-structural protein 11; Short=nsp11 [Porcine epidemic diarrhea virus CV777]
Sequence ID: P0C6V6.1 Length: 4117
Range 1: 2998 to 3299
Score:263 bits(673), Expect:1e-78,
Method:Compositional matrix adjust.,
Identities:137/306(45%), Positives:196/306(64%), Gaps:4/306(1%)
Query 1 SGFRKMAFPSGKVEGCMVQVTCGTTTLNGLWLDDTVYCPRHVVCTAEDMLNPNYDDLLIR 60
+G RKMA PSG VE C+V+V G LNGLWL D V CPRHV+ ++ +YD L
Sbjct 2998 AGLRKMAQPSGVVEKCIVRVCYGNMALNGLWLGDIVMCPRHVIASSTTS-TIDYDYALSV 3056
Query 61 KSNHSFLVQAGNVQLRVIGHSMQNCLLRLKVDTSNPKTPKYKFVRIQPGQTFSVLACYNG 120
H+F + +GNV L V+ +M+ LL++KV+ +N TPKY + ++PG++F++LACY+G
Sbjct 3057 LRLHNFSISSGNVFLGVVSATMRGALLQIKVNQNNVHTPKYTYRTVRPGESFNILACYDG 3116
Query 121 SPSGVYQCAMRPNHTIKGSFLNGSCGSVGFNIDYDCVSFCYMHHMELPTGVHAGTDLEGK 180
+ +GVY MR N+TI+GSF+NG+CGS G+NI+ V FCY+H +EL +G H G+DL+G
Sbjct 3117 AAAGVYGVNMRSNYTIRGSFINGACGSPGYNINNGTVEFCYLHQLELGSGCHVGSDLDGV 3176
Query 181 FYGPFVDRQTAQAAGTDTTITLNVLAWLYAAVINGDRWFLNRFTTTLNDFNLVAMKYNYE 240
YG + D+ T Q G + T NVLA+LYAA+ING W+L+ ++ FN A+
Sbjct 3177 MYGGYEDQPTLQVEGASSLFTENVLAFLYAALINGSTWWLSSSRIAVDRFNEWAVHNGMT 3236
Query 241 PLTQDHVDILGPLSAQTGIAVLDMCAALKELLQNGMNGRTILGSTILEDEFTPFDVVRQC 300
T + D L+A+TG+ V + A+++ L +N G+ ILG T L DEFT +VVRQ
Sbjct 3237 --TVGNTDCFSILAAKTGVDVQRLLASIQSLHKN-FGGKQILGHTSLTDEFTTGEVVRQM 3293
Query 301 SGVTFQ 306
GV Q
Sbjct 3294 YGVNLQ 3299
>RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Non-structural protein 1; Short=nsp1; AltName: Full=p9; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p87; Contains: RecName: Full=Papain-like protease nsp3; AltName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=PL1-PRO/PL2-PRO; AltName: Full=PLP1/PLP2; AltName: Full=Papain-like proteinase; Short=PL-PRO; AltName: Full=p195; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; AltName: Full=Peptide HD2; Contains: RecName: Full=3C-like proteinase nsp5; Short=3CL-PRO; Short=3CLp; AltName: Full=M-PRO; AltName: Full=nsp5; AltName: Full=p34; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; AltName: Full=p5; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; AltName: Full=p23; Contains: RecName: Full=Viral protein genome-linked nsp9; AltName: Full=Non-structural protein 9; Short=nsp9; AltName: Full=RNA-capping enzyme subunit nsp9; AltName: Full=p12; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; AltName: Full=p14; Contains: RecName: Full=RNA-directed RNA polymerase nsp12; Short=Pol; Short=RdRp; AltName: Full=nsp12; AltName: Full=p100; Contains: RecName: Full=Helicase nsp13; Short=Hel; AltName: Full=nsp13; AltName: Full=p66; AltName: Full=p66-HEL; Contains: RecName: Full=Guanine-N7 methyltransferase nsp14; AltName: Full=Non-structural protein 14; Short=nsp14; AltName: Full=Proofreading exoribonuclease nsp14; Short=ExoN; Contains: RecName: Full=Uridylate-specific endoribonuclease nsp15; AltName: Full=NendoU; AltName: Full=Non-structural protein 15; Short=nsp15; Contains: RecName: Full=2'-O-methyltransferase nsp16; AltName: Full=Non-structural protein 16; Short=nsp16 [Porcine epidemic diarrhea virus CV777]
Sequence ID: P0C6Y4.1 Length: 6781
Range 1: 2998 to 3299
Score:262 bits(670), Expect:3e-78,
Method:Compositional matrix adjust.,
Identities:137/306(45%), Positives:196/306(64%), Gaps:4/306(1%)
Query 1 SGFRKMAFPSGKVEGCMVQVTCGTTTLNGLWLDDTVYCPRHVVCTAEDMLNPNYDDLLIR 60
+G RKMA PSG VE C+V+V G LNGLWL D V CPRHV+ ++ +YD L
Sbjct 2998 AGLRKMAQPSGVVEKCIVRVCYGNMALNGLWLGDIVMCPRHVIASSTTS-TIDYDYALSV 3056
Query 61 KSNHSFLVQAGNVQLRVIGHSMQNCLLRLKVDTSNPKTPKYKFVRIQPGQTFSVLACYNG 120
H+F + +GNV L V+ +M+ LL++KV+ +N TPKY + ++PG++F++LACY+G
Sbjct 3057 LRLHNFSISSGNVFLGVVSATMRGALLQIKVNQNNVHTPKYTYRTVRPGESFNILACYDG 3116
Query 121 SPSGVYQCAMRPNHTIKGSFLNGSCGSVGFNIDYDCVSFCYMHHMELPTGVHAGTDLEGK 180
+ +GVY MR N+TI+GSF+NG+CGS G+NI+ V FCY+H +EL +G H G+DL+G
Sbjct 3117 AAAGVYGVNMRSNYTIRGSFINGACGSPGYNINNGTVEFCYLHQLELGSGCHVGSDLDGV 3176
Query 181 FYGPFVDRQTAQAAGTDTTITLNVLAWLYAAVINGDRWFLNRFTTTLNDFNLVAMKYNYE 240
YG + D+ T Q G + T NVLA+LYAA+ING W+L+ ++ FN A+
Sbjct 3177 MYGGYEDQPTLQVEGASSLFTENVLAFLYAALINGSTWWLSSSRIAVDRFNEWAVHNGMT 3236
Query 241 PLTQDHVDILGPLSAQTGIAVLDMCAALKELLQNGMNGRTILGSTILEDEFTPFDVVRQC 300
T + D L+A+TG+ V + A+++ L +N G+ ILG T L DEFT +VVRQ
Sbjct 3237 --TVGNTDCFSILAAKTGVDVQRLLASIQSLHKN-FGGKQILGHTSLTDEFTTGEVVRQM 3293
Query 301 SGVTFQ 306
GV Q
Sbjct 3294 YGVNLQ 3299
>RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Non-structural protein 1; Short=nsp1; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; Contains: RecName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=PL1-PRO/PL2-PRO; AltName: Full=PLP1/PLP2; AltName: Full=Papain-like proteinases 1/2; AltName: Full=p195; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; AltName: Full=Peptide HD2; Contains: RecName: Full=3C-like proteinase; Short=3CL-PRO; Short=3CLp; AltName: Full=M-PRO; AltName: Full=nsp5; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; Contains: RecName: Full=Viral protein genome-linked nsp9; AltName: Full=Non-structural protein 9; Short=nsp9; AltName: Full=RNA-capping enzyme subunit nsp9; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; Contains: RecName: Full=Non-structural protein 11; Short=nsp11; Contains: RecName: Full=RNA-directed RNA polymerase nsp12; Short=Pol; Short=RdRp; AltName: Full=nsp12; Contains: RecName: Full=Helicase; Short=Hel; AltName: Full=nsp13; Contains: RecName: Full=Exoribonuclease; Short=ExoN; AltName: Full=nsp14; Contains: RecName: Full=Uridylate-specific endoribonuclease; AltName: Full=NendoU; AltName: Full=nsp15; Contains: RecName: Full=Putative 2'-O-methyl transferase; AltName: Full=nsp16 [Feline infectious peritonitis virus (strain 79-1146)]
Sequence ID: Q98VG9.2 Length: 6709
Range 1: 2904 to 3205
Score:250 bits(639), Expect:4e-74,
Method:Compositional matrix adjust.,
Identities:132/306(43%), Positives:184/306(60%), Gaps:4/306(1%)
Query 1 SGFRKMAFPSGKVEGCMVQVTCGTTTLNGLWLDDTVYCPRHVVCTAEDMLNPNYDDLLIR 60
SG RKMA PSG VE C+V+V G LNGLWL D V CPRHV+ + + NY++ L
Sbjct 2904 SGLRKMAQPSGVVEPCIVRVAYGNNVLNGLWLGDEVICPRHVIASDTSRV-INYENELSS 2962
Query 61 KSNHSFLVQAGNVQLRVIGHSMQNCLLRLKVDTSNPKTPKYKFVRIQPGQTFSVLACYNG 120
H+F + N L V+ + L LKV+ NP TP++KF ++PG++F++LACY G
Sbjct 2963 VRLHNFSIAKNNAFLGVVSAKYKGVNLVLKVNQVNPNTPEHKFKSVRPGESFNILACYEG 3022
Query 121 SPSGVYQCAMRPNHTIKGSFLNGSCGSVGFNIDYDCVSFCYMHHMELPTGVHAGTDLEGK 180
P VY MR TIKGSF+ G+CGSVG+ ++ + F YMHH+EL G H G++LEG+
Sbjct 3023 CPGSVYGVNMRSQGTIKGSFIAGTCGSVGYVLENGTLYFVYMHHLELGNGSHVGSNLEGE 3082
Query 181 FYGPFVDRQTAQAAGTDTTITLNVLAWLYAAVINGDRWFLNRFTTTLNDFNLVAMKYNYE 240
YG + D+ + Q GT+ + NV+A+LYAA+ING+RWF+ + TL +N A ++
Sbjct 3083 MYGGYEDQPSMQLEGTNVMSSDNVVAFLYAALINGERWFVTNTSMTLESYNAWAKTNSFT 3142
Query 241 PLTQDHVDILGPLSAQTGIAVLDMCAALKELLQNGMNGRTILGSTILEDEFTPFDVVRQC 300
+ D L+A+TG +V + + L G GRTIL L DEFTP +V+RQ
Sbjct 3143 EIVS--TDAFNMLAAKTGYSVEKLLECIVR-LNKGFGGRTILSYGSLCDEFTPTEVIRQM 3199
Query 301 SGVTFQ 306
GV Q
Sbjct 3200 YGVNLQ 3205
>RecName: Full=Replicase polyprotein 1a; Short=pp1a; AltName: Full=ORF1a polyprotein; Contains: RecName: Full=Non-structural protein 1; Short=nsp1; AltName: Full=p9; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p87; Contains: RecName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=PL1-PRO/PL2-PRO; AltName: Full=PLP1/PLP2; AltName: Full=Papain-like proteinases 1/2; AltName: Full=p195; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; AltName: Full=Peptide HD2; Contains: RecName: Full=3C-like proteinase; Short=3CL-PRO; Short=3CLp; AltName: Full=M-PRO; AltName: Full=nsp5; AltName: Full=p34; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; AltName: Full=p5; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; AltName: Full=p23; Contains: RecName: Full=Non-structural protein 9; Short=nsp9; AltName: Full=p12; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; AltName: Full=p14; Contains: RecName: Full=Non-structural protein 11; Short=nsp11 [Porcine transmissible gastroenteritis coronavirus strain Purdue]
Sequence ID: P0C6V2.1 Length: 4017
Range 1: 2879 to 3180
Score:249 bits(635), Expect:2e-73,
Method:Compositional matrix adjust.,
Identities:132/306(43%), Positives:186/306(60%), Gaps:4/306(1%)
Query 1 SGFRKMAFPSGKVEGCMVQVTCGTTTLNGLWLDDTVYCPRHVVCTAEDMLNPNYDDLLIR 60
SG RKMA PSG VE C+V+V+ G LNGLWL D V CPRHV+ + + NY++ +
Sbjct 2879 SGLRKMAQPSGLVEPCIVRVSYGNNVLNGLWLGDEVICPRHVIASDTTRV-INYENEMSS 2937
Query 61 KSNHSFLVQAGNVQLRVIGHSMQNCLLRLKVDTSNPKTPKYKFVRIQPGQTFSVLACYNG 120
H+F V NV L V+ + L LKV+ NP TP++KF I+ G++F++LACY G
Sbjct 2938 VRLHNFSVSKNNVFLGVVSARYKGVNLVLKVNQVNPNTPEHKFKSIKAGESFNILACYEG 2997
Query 121 SPSGVYQCAMRPNHTIKGSFLNGSCGSVGFNIDYDCVSFCYMHHMELPTGVHAGTDLEGK 180
P VY MR TIKGSF+ G+CGSVG+ ++ + F YMHH+EL G H G++ EG+
Sbjct 2998 CPGSVYGVNMRSQGTIKGSFIAGTCGSVGYVLENGILYFVYMHHLELGNGSHVGSNFEGE 3057
Query 181 FYGPFVDRQTAQAAGTDTTITLNVLAWLYAAVINGDRWFLNRFTTTLNDFNLVAMKYNYE 240
YG + D+ + Q GT+ + NV+A+LYAA+ING+RWF+ + +L +N A ++
Sbjct 3058 MYGGYEDQPSMQLEGTNVMSSDNVVAFLYAALINGERWFVTNTSMSLESYNTWAKTNSFT 3117
Query 241 PLTQDHVDILGPLSAQTGIAVLDMCAALKELLQNGMNGRTILGSTILEDEFTPFDVVRQC 300
L+ D L+A+TG +V + ++ L G GRTIL L DEFTP +V+RQ
Sbjct 3118 ELSS--TDAFSMLAAKTGQSVEKLLDSIVR-LNKGFGGRTILSYGSLCDEFTPTEVIRQM 3174
Query 301 SGVTFQ 306
GV Q
Sbjct 3175 YGVNLQ 3180
>RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Non-structural protein 1; Short=nsp1; AltName: Full=p9; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p87; Contains: RecName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=PL1-PRO/PL2-PRO; AltName: Full=PLP1/PLP2; AltName: Full=Papain-like proteinases 1/2; AltName: Full=p195; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; AltName: Full=Peptide HD2; Contains: RecName: Full=3C-like proteinase; Short=3CL-PRO; Short=3CLp; AltName: Full=M-PRO; AltName: Full=nsp5; AltName: Full=p34; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; AltName: Full=p5; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; AltName: Full=p23; Contains: RecName: Full=Viral protein genome-linked nsp9; AltName: Full=Non-structural protein 9; Short=nsp9; AltName: Full=RNA-capping enzyme subunit nsp9; AltName: Full=p12; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; AltName: Full=p14; Contains: RecName: Full=RNA-directed RNA polymerase nsp12; Short=Pol; Short=RdRp; AltName: Full=nsp12; AltName: Full=p100; Contains: RecName: Full=Helicase; Short=Hel; AltName: Full=nsp13; AltName: Full=p66; AltName: Full=p66-HEL; Contains: RecName: Full=Exoribonuclease; Short=ExoN; AltName: Full=nsp14; Contains: RecName: Full=Uridylate-specific endoribonuclease; AltName: Full=NendoU; AltName: Full=nsp15; AltName: Full=p41; Contains: RecName: Full=Putative 2'-O-methyl transferase; AltName: Full=nsp16 [Porcine transmissible gastroenteritis coronavirus strain Purdue]
Sequence ID: P0C6Y5.1 Length: 6684
Range 1: 2879 to 3180
Score:248 bits(633), Expect:3e-73,
Method:Compositional matrix adjust.,
Identities:132/306(43%), Positives:186/306(60%), Gaps:4/306(1%)
Query 1 SGFRKMAFPSGKVEGCMVQVTCGTTTLNGLWLDDTVYCPRHVVCTAEDMLNPNYDDLLIR 60
SG RKMA PSG VE C+V+V+ G LNGLWL D V CPRHV+ + + NY++ +
Sbjct 2879 SGLRKMAQPSGLVEPCIVRVSYGNNVLNGLWLGDEVICPRHVIASDTTRV-INYENEMSS 2937
Query 61 KSNHSFLVQAGNVQLRVIGHSMQNCLLRLKVDTSNPKTPKYKFVRIQPGQTFSVLACYNG 120
H+F V NV L V+ + L LKV+ NP TP++KF I+ G++F++LACY G
Sbjct 2938 VRLHNFSVSKNNVFLGVVSARYKGVNLVLKVNQVNPNTPEHKFKSIKAGESFNILACYEG 2997
Query 121 SPSGVYQCAMRPNHTIKGSFLNGSCGSVGFNIDYDCVSFCYMHHMELPTGVHAGTDLEGK 180
P VY MR TIKGSF+ G+CGSVG+ ++ + F YMHH+EL G H G++ EG+
Sbjct 2998 CPGSVYGVNMRSQGTIKGSFIAGTCGSVGYVLENGILYFVYMHHLELGNGSHVGSNFEGE 3057
Query 181 FYGPFVDRQTAQAAGTDTTITLNVLAWLYAAVINGDRWFLNRFTTTLNDFNLVAMKYNYE 240
YG + D+ + Q GT+ + NV+A+LYAA+ING+RWF+ + +L +N A ++
Sbjct 3058 MYGGYEDQPSMQLEGTNVMSSDNVVAFLYAALINGERWFVTNTSMSLESYNTWAKTNSFT 3117
Query 241 PLTQDHVDILGPLSAQTGIAVLDMCAALKELLQNGMNGRTILGSTILEDEFTPFDVVRQC 300
L+ D L+A+TG +V + ++ L G GRTIL L DEFTP +V+RQ
Sbjct 3118 ELSS--TDAFSMLAAKTGQSVEKLLDSIVR-LNKGFGGRTILSYGSLCDEFTPTEVIRQM 3174
Query 301 SGVTFQ 306
GV Q
Sbjct 3175 YGVNLQ 3180
>RecName: Full=Replicase polyprotein 1a; Short=pp1a; AltName: Full=ORF1a polyprotein; Contains: RecName: Full=Non-structural protein 1; Short=nsp1; AltName: Full=p9; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p87; Contains: RecName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=PL1-PRO/PL2-PRO; AltName: Full=PLP1/PLP2; AltName: Full=Papain-like proteinases 1/2; AltName: Full=p195; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; AltName: Full=Peptide HD2; Contains: RecName: Full=3C-like proteinase; Short=3CL-PRO; Short=3CLp; AltName: Full=M-PRO; AltName: Full=nsp5; AltName: Full=p34; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; AltName: Full=p5; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; AltName: Full=p23; Contains: RecName: Full=Non-structural protein 9; Short=nsp9; AltName: Full=p12; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; AltName: Full=p14; Contains: RecName: Full=Non-structural protein 11; Short=nsp11 [Human coronavirus NL63]
Sequence ID: P0C6U6.1 Length: 4060
Range 1: 2940 to 3242
Score:248 bits(632), Expect:4e-73,
Method:Compositional matrix adjust.,
Identities:134/307(44%), Positives:191/307(62%), Gaps:5/307(1%)
Query 1 SGFRKMAFPSGKVEGCMVQVTCGTTTLNGLWLDDTVYCPRHVVCTAEDMLNPNYDDLLIR 60
SG +KMA PSG VE C+V+V G+T LNG+WL DTV CPRHV+ + +L +YD
Sbjct 2940 SGLKKMAQPSGCVERCVVRVCYGSTVLNGVWLGDTVTCPRHVIAPSTTVL-IDYDHAYST 2998
Query 61 KSNHSFLVQAGNVQLRVIGHSMQNCLLRLKVDTSNPKTPKYKFVRIQPGQTFSVLACYNG 120
H+F V V L V+G +M +LR+KV SN TPK+ F ++PG +F++LACY G
Sbjct 2999 MRLHNFSVSHNGVFLGVVGVTMHGSVLRIKVSQSNVHTPKHVFKTLKPGDSFNILACYEG 3058
Query 121 SPSGVYQCAMRPNHTIKGSFLNGSCGSVGFNIDYD-CVSFCYMHHMELPTGVHAGTDLEG 179
SGV+ +R N TIKGSF+NG+CGS G+N+ D V FCY+H +EL +G H G+D G
Sbjct 3059 IASGVFGVNLRTNFTIKGSFINGACGSPGYNVRNDGTVEFCYLHQIELGSGAHVGSDFTG 3118
Query 180 KFYGPFVDRQTAQAAGTDTTITLNVLAWLYAAVINGDRWFLNRFTTTLNDFNLVAMKYNY 239
YG F D+ + Q + ++ NV+A+LYAA++NG RW+L ++ FN AM Y
Sbjct 3119 SVYGNFDDQPSLQVESANLMLSDNVVAFLYAALLNGCRWWLCSTRVNVDGFNEWAMANGY 3178
Query 240 EPLTQDHVDILGPLSAQTGIAVLDMCAALKELLQNGMNGRTILGSTILEDEFTPFDVVRQ 299
++ V+ L+A+TG++V + A+++ L G G+ ILG + L DEFT +VV+Q
Sbjct 3179 TSVSS--VECYSILAAKTGVSVEQLLASIQH-LHEGFGGKNILGYSSLCDEFTLAEVVKQ 3235
Query 300 CSGVTFQ 306
GV Q
Sbjct 3236 MYGVNLQ 3242
>RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Non-structural protein 1; Short=nsp1; AltName: Full=p9; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p87; Contains: RecName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=PL1-PRO/PL2-PRO; AltName: Full=PLP1/PLP2; AltName: Full=Papain-like proteinases 1/2; AltName: Full=p195; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; AltName: Full=Peptide HD2; Contains: RecName: Full=3C-like proteinase; Short=3CL-PRO; Short=3CLp; AltName: Full=M-PRO; AltName: Full=nsp5; AltName: Full=p34; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; AltName: Full=p5; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; AltName: Full=p23; Contains: RecName: Full=Viral protein genome-linked nsp9; AltName: Full=Non-structural protein 9; Short=nsp9; AltName: Full=RNA-capping enzyme subunit nsp9; AltName: Full=p12; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; AltName: Full=p14; Contains: RecName: Full=RNA-directed RNA polymerase nsp12; Short=Pol; Short=RdRp; AltName: Full=nsp12; AltName: Full=p100; Contains: RecName: Full=Helicase; Short=Hel; AltName: Full=nsp13; AltName: Full=p66; AltName: Full=p66-HEL; Contains: RecName: Full=Exoribonuclease; Short=ExoN; AltName: Full=nsp14; Contains: RecName: Full=Uridylate-specific endoribonuclease; AltName: Full=NendoU; AltName: Full=nsp15; AltName: Full=p41; Contains: RecName: Full=Putative 2'-O-methyl transferase; AltName: Full=nsp16 [Human coronavirus NL63]
Sequence ID: P0C6X5.1 Length: 6729
Range 1: 2940 to 3242
Score:248 bits(632), Expect:4e-73,
Method:Compositional matrix adjust.,
Identities:134/307(44%), Positives:191/307(62%), Gaps:5/307(1%)
Query 1 SGFRKMAFPSGKVEGCMVQVTCGTTTLNGLWLDDTVYCPRHVVCTAEDMLNPNYDDLLIR 60
SG +KMA PSG VE C+V+V G+T LNG+WL DTV CPRHV+ + +L +YD
Sbjct 2940 SGLKKMAQPSGCVERCVVRVCYGSTVLNGVWLGDTVTCPRHVIAPSTTVL-IDYDHAYST 2998
Query 61 KSNHSFLVQAGNVQLRVIGHSMQNCLLRLKVDTSNPKTPKYKFVRIQPGQTFSVLACYNG 120
H+F V V L V+G +M +LR+KV SN TPK+ F ++PG +F++LACY G
Sbjct 2999 MRLHNFSVSHNGVFLGVVGVTMHGSVLRIKVSQSNVHTPKHVFKTLKPGDSFNILACYEG 3058
Query 121 SPSGVYQCAMRPNHTIKGSFLNGSCGSVGFNIDYD-CVSFCYMHHMELPTGVHAGTDLEG 179
SGV+ +R N TIKGSF+NG+CGS G+N+ D V FCY+H +EL +G H G+D G
Sbjct 3059 IASGVFGVNLRTNFTIKGSFINGACGSPGYNVRNDGTVEFCYLHQIELGSGAHVGSDFTG 3118
Query 180 KFYGPFVDRQTAQAAGTDTTITLNVLAWLYAAVINGDRWFLNRFTTTLNDFNLVAMKYNY 239
YG F D+ + Q + ++ NV+A+LYAA++NG RW+L ++ FN AM Y
Sbjct 3119 SVYGNFDDQPSLQVESANLMLSDNVVAFLYAALLNGCRWWLCSTRVNVDGFNEWAMANGY 3178
Query 240 EPLTQDHVDILGPLSAQTGIAVLDMCAALKELLQNGMNGRTILGSTILEDEFTPFDVVRQ 299
++ V+ L+A+TG++V + A+++ L G G+ ILG + L DEFT +VV+Q
Sbjct 3179 TSVSS--VECYSILAAKTGVSVEQLLASIQH-LHEGFGGKNILGYSSLCDEFTLAEVVKQ 3235
Query 300 CSGVTFQ 306
GV Q
Sbjct 3236 MYGVNLQ 3242
>RecName: Full=Replicase polyprotein 1a; Short=pp1a; AltName: Full=ORF1a polyprotein; Contains: RecName: Full=Non-structural protein 1; Short=nsp1; AltName: Full=p9; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p87; Contains: RecName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=PL1-PRO/PL2-PRO; AltName: Full=PLP1/PLP2; AltName: Full=Papain-like proteinases 1/2; AltName: Full=p195; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; AltName: Full=Peptide HD2; Contains: RecName: Full=3C-like proteinase; Short=3CL-PRO; Short=3CLp; AltName: Full=M-PRO; AltName: Full=nsp5; AltName: Full=p34; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; AltName: Full=p5; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; AltName: Full=p23; Contains: RecName: Full=Non-structural protein 9; Short=nsp9; AltName: Full=p12; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; AltName: Full=p16; Contains: RecName: Full=Non-structural protein 11; Short=nsp11 [Human coronavirus 229E]
Sequence ID: P0C6U2.1 Length: 4085
Range 1: 2966 to 3267
Score:232 bits(592), Expect:9e-68,
Method:Compositional matrix adjust.,
Identities:122/307(40%), Positives:186/307(60%), Gaps:6/307(1%)
Query 1 SGFRKMAFPSGKVEGCMVQVTCGTTTLNGLWLDDTVYCPRHVVCT-AEDMLNPNYDDLLI 59
+G RKMA PSG VE C+V+V G T LNGLWL D VYCPRHV+ + ++ +++ ++
Sbjct 2966 AGLRKMAQPSGFVEKCVVRVCYGNTVLNGLWLGDIVYCPRHVIASNTTSAIDYDHEYSIM 3025
Query 60 RKSNHSFLVQAGNVQLRVIGHSMQNCLLRLKVDTSNPKTPKYKFVRIQPGQTFSVLACYN 119
R H+F + +G L V+G +M L++KV +N TP++ F ++ G+ F++LACY+
Sbjct 3026 RL--HNFSIISGTAFLGVVGATMHGVTLKIKVSQTNMHTPRHSFRTLKSGEGFNILACYD 3083
Query 120 GSPSGVYQCAMRPNHTIKGSFLNGSCGSVGFNIDYDCVSFCYMHHMELPTGVHAGTDLEG 179
G GV+ MR N TI+GSF+NG+CGS G+N+ V F YMH +EL +G H G+ +G
Sbjct 3084 GCAQGVFGVNMRTNWTIRGSFINGACGSPGYNLKNGEVEFVYMHQIELGSGSHVGSSFDG 3143
Query 180 KFYGPFVDRQTAQAAGTDTTITLNVLAWLYAAVINGDRWFLNRFTTTLNDFNLVAMKYNY 239
YG F D+ Q + +T+NV+A+LYAA++NG W+L + +N A +
Sbjct 3144 VMYGGFEDQPNLQVESANQMLTVNVVAFLYAAILNGCTWWLKGEKLFVEHYNEWAQANGF 3203
Query 240 EPLTQDHVDILGPLSAQTGIAVLDMCAALKELLQNGMNGRTILGSTILEDEFTPFDVVRQ 299
+ + D L+A+TG+ V + A+ ++L NG G+ ILG + L DEF+ +VV+Q
Sbjct 3204 TAMNGE--DAFSILAAKTGVCVERLLHAI-QVLNNGFGGKQILGYSSLNDEFSINEVVKQ 3260
Query 300 CSGVTFQ 306
GV Q
Sbjct 3261 MFGVNLQ 3267
>RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Non-structural protein 1; Short=nsp1; AltName: Full=p9; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p87; Contains: RecName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=PL1-PRO/PL2-PRO; AltName: Full=PLP1/PLP2; AltName: Full=Papain-like proteinases 1/2; AltName: Full=p195; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; AltName: Full=Peptide HD2; Contains: RecName: Full=3C-like proteinase; Short=3CL-PRO; Short=3CLp; AltName: Full=M-PRO; AltName: Full=nsp5; AltName: Full=p34; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; AltName: Full=p5; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; AltName: Full=p23; Contains: RecName: Full=Viral protein genome-linked nsp9; AltName: Full=Non-structural protein 9; Short=nsp9; AltName: Full=RNA-capping enzyme subunit nsp9; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; AltName: Full=p16; Contains: RecName: Full=RNA-directed RNA polymerase nsp12; Short=Pol; Short=RdRp; AltName: Full=nsp12; AltName: Full=p100; Contains: RecName: Full=Helicase; Short=Hel; AltName: Full=nsp13; AltName: Full=p66; AltName: Full=p66-HEL; Contains: RecName: Full=Exoribonuclease; Short=ExoN; AltName: Full=nsp14; Contains: RecName: Full=Uridylate-specific endoribonuclease; AltName: Full=NendoU; AltName: Full=nsp15; AltName: Full=p41; Contains: RecName: Full=Putative 2'-O-methyl transferase; AltName: Full=nsp16 [Human coronavirus 229E]
Sequence ID: P0C6X1.1 Length: 6758
Range 1: 2966 to 3267
Score:232 bits(591), Expect:1e-67,
Method:Compositional matrix adjust.,
Identities:122/307(40%), Positives:186/307(60%), Gaps:6/307(1%)
Query 1 SGFRKMAFPSGKVEGCMVQVTCGTTTLNGLWLDDTVYCPRHVVCT-AEDMLNPNYDDLLI 59
+G RKMA PSG VE C+V+V G T LNGLWL D VYCPRHV+ + ++ +++ ++
Sbjct 2966 AGLRKMAQPSGFVEKCVVRVCYGNTVLNGLWLGDIVYCPRHVIASNTTSAIDYDHEYSIM 3025
Query 60 RKSNHSFLVQAGNVQLRVIGHSMQNCLLRLKVDTSNPKTPKYKFVRIQPGQTFSVLACYN 119
R H+F + +G L V+G +M L++KV +N TP++ F ++ G+ F++LACY+
Sbjct 3026 RL--HNFSIISGTAFLGVVGATMHGVTLKIKVSQTNMHTPRHSFRTLKSGEGFNILACYD 3083
Query 120 GSPSGVYQCAMRPNHTIKGSFLNGSCGSVGFNIDYDCVSFCYMHHMELPTGVHAGTDLEG 179
G GV+ MR N TI+GSF+NG+CGS G+N+ V F YMH +EL +G H G+ +G
Sbjct 3084 GCAQGVFGVNMRTNWTIRGSFINGACGSPGYNLKNGEVEFVYMHQIELGSGSHVGSSFDG 3143
Query 180 KFYGPFVDRQTAQAAGTDTTITLNVLAWLYAAVINGDRWFLNRFTTTLNDFNLVAMKYNY 239
YG F D+ Q + +T+NV+A+LYAA++NG W+L + +N A +
Sbjct 3144 VMYGGFEDQPNLQVESANQMLTVNVVAFLYAAILNGCTWWLKGEKLFVEHYNEWAQANGF 3203
Query 240 EPLTQDHVDILGPLSAQTGIAVLDMCAALKELLQNGMNGRTILGSTILEDEFTPFDVVRQ 299
+ + D L+A+TG+ V + A+ ++L NG G+ ILG + L DEF+ +VV+Q
Sbjct 3204 TAMNGE--DAFSILAAKTGVCVERLLHAI-QVLNNGFGGKQILGYSSLNDEFSINEVVKQ 3260
Query 300 CSGVTFQ 306
GV Q
Sbjct 3261 MFGVNLQ 3267
>RecName: Full=Replicase polyprotein 1a; Short=pp1a; AltName: Full=ORF1a polyprotein; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p87; Contains: RecName: Full=Papain-like protease; Short=PL-PRO; AltName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=p195; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; AltName: Full=Peptide HD2; AltName: Full=p41; Contains: RecName: Full=3C-like proteinase; Short=3CL-PRO; Short=3CLp; AltName: Full=Main protease; Short=Mpro; AltName: Full=Non-structural protein 5; Short=nsp5; AltName: Full=p33; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; AltName: Full=p34; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; AltName: Full=p9; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; AltName: Full=p24; Contains: RecName: Full=Non-structural protein 9; Short=nsp9; AltName: Full=p10; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; AltName: Full=p16; Contains: RecName: Full=Non-structural protein 11; Short=nsp11 [Avian infectious bronchitis virus (strain Beaudette)]
Sequence ID: P0C6V3.1 Length: 3951
>RecName: Full=Replicase polyprotein 1a; Short=pp1a; AltName: Full=ORF1a polyprotein; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p87; Contains: RecName: Full=Papain-like protease; Short=PL-PRO; AltName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=p195; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; AltName: Full=Peptide HD2; AltName: Full=p41; Contains: RecName: Full=3C-like proteinase; Short=3CL-PRO; Short=3CLp; AltName: Full=Main protease; Short=Mpro; AltName: Full=Non-structural protein 5; Short=nsp5; AltName: Full=p33; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; AltName: Full=p34; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; AltName: Full=p9; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; AltName: Full=p24; Contains: RecName: Full=Non-structural protein 9; Short=nsp9; AltName: Full=p10; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; AltName: Full=p16; Contains: RecName: Full=Non-structural protein 11; Short=nsp11 [Avian infectious bronchitis virus (strain Beaudette CK)]
Sequence ID: P0C6V4.1 Length: 3951
Range 1: 2780 to 3086
Score:229 bits(584), Expect:1e-66,
Method:Compositional matrix adjust.,
Identities:127/316(40%), Positives:180/316(56%), Gaps:19/316(6%)
Query 1 SGFRKMAFPSGKVEGCMVQVTCGTTTLNGLWLDDTVYCPRHVVCTAEDMLNPNYDDLLIR 60
SGF+K+ PS VE C+V V+ LNGLWL DT+YCPRHV+ ++D+L
Sbjct 2780 SGFKKLVSPSSAVEKCIVSVSYRGNNLNGLWLGDTIYCPRHVL---GKFSGDQWNDVLNL 2836
Query 61 KSNHSFLVQAGN-VQLRVIGHSMQNCLLRLKVDTSNPKTPKYKFVRIQPGQTFSVLACYN 119
+NH F V + V L V+ ++ +L L+ +N +TPKYKF++ G +F++ Y
Sbjct 2837 ANNHEFEVTTQHGVTLNVVSRRLKGAVLILQTAVANAETPKYKFIKANCGDSFTIACAYG 2896
Query 120 GSPSGVYQCAMRPNHTIKGSFLNGSCGSVGFNIDYDCVSFCYMHHMELPTGVHAGTDLEG 179
G+ G+Y MR N TI+ SFL G+CGSVGFNI+ V+F YMHH+ELP +H GTDL G
Sbjct 2897 GTVVGLYPVTMRSNGTIRASFLAGACGSVGFNIEKGVVNFFYMHHLELPNALHTGTDLMG 2956
Query 180 KFYGPFVDRQTAQAAGTDTTITLNVLAWLYAAVINGD-------RWFLNRFTTTLNDFNL 232
+FYG +VD + AQ D +T N++AWLYAA+I+ +W L T +++D+N
Sbjct 2957 EFYGGYVDEEVAQRVPPDNLVTNNIVAWLYAAIISVKESSFSLPKW-LESTTVSVDDYNK 3015
Query 233 VAMKYNYEPLTQDHVDILGPLSAQTGIAVLDMCAALKELL--QNGMNGRTILGSTILEDE 290
A + P + + LSA TG+ D+C L+ ++ + G ILG EDE
Sbjct 3016 WAGDNGFTPFSTSTA--ITKLSAITGV---DVCKLLRTIMVKNSQWGGDPILGQYNFEDE 3070
Query 291 FTPFDVVRQCSGVTFQ 306
TP V Q GV Q
Sbjct 3071 LTPESVFNQIGGVRLQ 3086
>RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p87; Contains: RecName: Full=Papain-like protease; Short=PL-PRO; AltName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=p195; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; AltName: Full=Peptide HD2; AltName: Full=p41; Contains: RecName: Full=3C-like proteinase; Short=3CL-PRO; Short=3CLp; AltName: Full=Main protease; Short=Mpro; AltName: Full=Non-structural protein 5; Short=nsp5; AltName: Full=p33; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; AltName: Full=p34; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; AltName: Full=p9; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; AltName: Full=p24; Contains: RecName: Full=Viral protein genome-linked nsp9; AltName: Full=Non-structural protein 9; Short=nsp9; AltName: Full=RNA-capping enzyme subunit nsp9; AltName: Full=p10; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; AltName: Full=p16; Contains: RecName: Full=RNA-directed RNA polymerase nsp12; Short=Pol; Short=RdRp; AltName: Full=nsp12; AltName: Full=p100; Contains: RecName: Full=Helicase; Short=Hel; AltName: Full=nsp13; AltName: Full=p68; Contains: RecName: Full=Proofreading exoribonuclease; Short=ExoN; AltName: Full=Guanine-N7 methyltransferase; AltName: Full=Non-structural protein 14; Short=nsp14; AltName: Full=p58; Contains: RecName: Full=Uridylate-specific endoribonuclease; AltName: Full=NendoU; AltName: Full=Non-structural protein 15; Short=nsp15; AltName: Full=p39; Contains: RecName: Full=2'-O-methyl transferase; AltName: Full=Non-structural protein 16; Short=nsp16; AltName: Full=p35 [Avian infectious bronchitis virus (strain Beaudette)]
Sequence ID: P0C6Y1.1 Length: 6629
Range 1: 2780 to 3086
Score:228 bits(582), Expect:2e-66,
Method:Compositional matrix adjust.,
Identities:127/316(40%), Positives:180/316(56%), Gaps:19/316(6%)
Query 1 SGFRKMAFPSGKVEGCMVQVTCGTTTLNGLWLDDTVYCPRHVVCTAEDMLNPNYDDLLIR 60
SGF+K+ PS VE C+V V+ LNGLWL DT+YCPRHV+ ++D+L
Sbjct 2780 SGFKKLVSPSSAVEKCIVSVSYRGNNLNGLWLGDTIYCPRHVL---GKFSGDQWNDVLNL 2836
Query 61 KSNHSFLVQAGN-VQLRVIGHSMQNCLLRLKVDTSNPKTPKYKFVRIQPGQTFSVLACYN 119
+NH F V + V L V+ ++ +L L+ +N +TPKYKF++ G +F++ Y
Sbjct 2837 ANNHEFEVTTQHGVTLNVVSRRLKGAVLILQTAVANAETPKYKFIKANCGDSFTIACAYG 2896
Query 120 GSPSGVYQCAMRPNHTIKGSFLNGSCGSVGFNIDYDCVSFCYMHHMELPTGVHAGTDLEG 179
G+ G+Y MR N TI+ SFL G+CGSVGFNI+ V+F YMHH+ELP +H GTDL G
Sbjct 2897 GTVVGLYPVTMRSNGTIRASFLAGACGSVGFNIEKGVVNFFYMHHLELPNALHTGTDLMG 2956
Query 180 KFYGPFVDRQTAQAAGTDTTITLNVLAWLYAAVINGD-------RWFLNRFTTTLNDFNL 232
+FYG +VD + AQ D +T N++AWLYAA+I+ +W L T +++D+N
Sbjct 2957 EFYGGYVDEEVAQRVPPDNLVTNNIVAWLYAAIISVKESSFSLPKW-LESTTVSVDDYNK 3015
Query 233 VAMKYNYEPLTQDHVDILGPLSAQTGIAVLDMCAALKELL--QNGMNGRTILGSTILEDE 290
A + P + + LSA TG+ D+C L+ ++ + G ILG EDE
Sbjct 3016 WAGDNGFTPFSTSTA--ITKLSAITGV---DVCKLLRTIMVKNSQWGGDPILGQYNFEDE 3070
Query 291 FTPFDVVRQCSGVTFQ 306
TP V Q GV Q
Sbjct 3071 LTPESVFNQIGGVRLQ 3086
>RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p87; Contains: RecName: Full=Papain-like protease; Short=PL-PRO; AltName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=p195; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; AltName: Full=Peptide HD2; AltName: Full=p41; Contains: RecName: Full=3C-like proteinase; Short=3CL-PRO; Short=3CLp; AltName: Full=Main protease; Short=Mpro; AltName: Full=Non-structural protein 5; Short=nsp5; AltName: Full=p33; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; AltName: Full=p34; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; AltName: Full=p9; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; AltName: Full=p24; Contains: RecName: Full=Viral protein genome-linked nsp9; AltName: Full=Non-structural protein 9; Short=nsp9; AltName: Full=RNA-capping enzyme subunit nsp9; AltName: Full=p10; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; AltName: Full=p16; Contains: RecName: Full=RNA-directed RNA polymerase nsp12; Short=Pol; Short=RdRp; AltName: Full=nsp12; AltName: Full=p100; Contains: RecName: Full=Helicase; Short=Hel; AltName: Full=nsp13; AltName: Full=p68; Contains: RecName: Full=Proofreading exoribonuclease; Short=ExoN; AltName: Full=Guanine-N7 methyltransferase; AltName: Full=Non-structural protein 14; Short=nsp14; AltName: Full=p58; Contains: RecName: Full=Uridylate-specific endoribonuclease; AltName: Full=NendoU; AltName: Full=Non-structural protein 15; Short=nsp15; AltName: Full=p39; Contains: RecName: Full=2'-O-methyl transferase; AltName: Full=Non-structural protein 16; Short=nsp16; AltName: Full=p35 [Avian infectious bronchitis virus (strain Beaudette CK)]
Sequence ID: P0C6Y2.1 Length: 6629
Range 1: 2780 to 3086
Score:228 bits(582), Expect:2e-66,
Method:Compositional matrix adjust.,
Identities:127/316(40%), Positives:180/316(56%), Gaps:19/316(6%)
Query 1 SGFRKMAFPSGKVEGCMVQVTCGTTTLNGLWLDDTVYCPRHVVCTAEDMLNPNYDDLLIR 60
SGF+K+ PS VE C+V V+ LNGLWL DT+YCPRHV+ ++D+L
Sbjct 2780 SGFKKLVSPSSAVEKCIVSVSYRGNNLNGLWLGDTIYCPRHVL---GKFSGDQWNDVLNL 2836
Query 61 KSNHSFLVQAGN-VQLRVIGHSMQNCLLRLKVDTSNPKTPKYKFVRIQPGQTFSVLACYN 119
+NH F V + V L V+ ++ +L L+ +N +TPKYKF++ G +F++ Y
Sbjct 2837 ANNHEFEVTTQHGVTLNVVSRRLKGAVLILQTAVANAETPKYKFIKANCGDSFTIACAYG 2896
Query 120 GSPSGVYQCAMRPNHTIKGSFLNGSCGSVGFNIDYDCVSFCYMHHMELPTGVHAGTDLEG 179
G+ G+Y MR N TI+ SFL G+CGSVGFNI+ V+F YMHH+ELP +H GTDL G
Sbjct 2897 GTVVGLYPVTMRSNGTIRASFLAGACGSVGFNIEKGVVNFFYMHHLELPNALHTGTDLMG 2956
Query 180 KFYGPFVDRQTAQAAGTDTTITLNVLAWLYAAVINGD-------RWFLNRFTTTLNDFNL 232
+FYG +VD + AQ D +T N++AWLYAA+I+ +W L T +++D+N
Sbjct 2957 EFYGGYVDEEVAQRVPPDNLVTNNIVAWLYAAIISVKESSFSLPKW-LESTTVSVDDYNK 3015
Query 233 VAMKYNYEPLTQDHVDILGPLSAQTGIAVLDMCAALKELL--QNGMNGRTILGSTILEDE 290
A + P + + LSA TG+ D+C L+ ++ + G ILG EDE
Sbjct 3016 WAGDNGFTPFSTSTA--ITKLSAITGV---DVCKLLRTIMVKNSQWGGDPILGQYNFEDE 3070
Query 291 FTPFDVVRQCSGVTFQ 306
TP V Q GV Q
Sbjct 3071 LTPESVFNQIGGVRLQ 3086
>RecName: Full=Replicase polyprotein 1a; Short=pp1a; AltName: Full=ORF1a polyprotein; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p87; Contains: RecName: Full=Papain-like protease; Short=PL-PRO; AltName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=p195; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; AltName: Full=Peptide HD2; AltName: Full=p41; Contains: RecName: Full=3C-like proteinase; Short=3CL-PRO; Short=3CLp; AltName: Full=Main protease; Short=Mpro; AltName: Full=Non-structural protein 5; Short=nsp5; AltName: Full=p33; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; AltName: Full=p34; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; AltName: Full=p9; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; AltName: Full=p24; Contains: RecName: Full=Non-structural protein 9; Short=nsp9; AltName: Full=p10; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; AltName: Full=p16; Contains: RecName: Full=Non-structural protein 11; Short=nsp11 [Avian infectious bronchitis virus (strain M41)]
Sequence ID: P0C6V5.1 Length: 3953
Range 1: 2782 to 3088
Score:226 bits(575), Expect:1e-65,
Method:Compositional matrix adjust.,
Identities:126/316(40%), Positives:177/316(56%), Gaps:19/316(6%)
Query 1 SGFRKMAFPSGKVEGCMVQVTCGTTTLNGLWLDDTVYCPRHVVCTAEDMLNPNYDDLLIR 60
+GF+K+ PS VE C+V V+ LNGLWL D++YCPRHV+ + D+L
Sbjct 2782 AGFKKLVSPSSAVEKCIVSVSYRGNNLNGLWLGDSIYCPRHVL---GKFSGDQWGDVLNL 2838
Query 61 KSNHSFLVQAGN-VQLRVIGHSMQNCLLRLKVDTSNPKTPKYKFVRIQPGQTFSVLACYN 119
+NH F V N V L V+ ++ +L L+ +N +TPKYKFV+ G +F++ Y
Sbjct 2839 ANNHEFEVVTQNGVTLNVVSRRLKGAVLILQTAVANAETPKYKFVKANCGDSFTIACSYG 2898
Query 120 GSPSGVYQCAMRPNHTIKGSFLNGSCGSVGFNIDYDCVSFCYMHHMELPTGVHAGTDLEG 179
G+ G+Y MR N TI+ SFL G+CGSVGFNI+ V+F YMHH+ELP +H GTDL G
Sbjct 2899 GTVIGLYPVTMRSNGTIRASFLAGACGSVGFNIEKGVVNFFYMHHLELPNALHTGTDLMG 2958
Query 180 KFYGPFVDRQTAQAAGTDTTITLNVLAWLYAAVINGD-------RWFLNRFTTTLNDFNL 232
+FYG +VD + AQ D +T N++AWLYAA+I+ +W L T ++ D+N
Sbjct 2959 EFYGGYVDEEVAQRVPPDNLVTNNIVAWLYAAIISVKESSFSQPKW-LESTTVSIEDYNR 3017
Query 233 VAMKYNYEPLTQDHVDILGPLSAQTGIAVLDMCAALKELLQNGMNGRT--ILGSTILEDE 290
A + P + + LSA TG+ D+C L+ ++ + ILG EDE
Sbjct 3018 WASDNGFTPFSTSTA--ITKLSAITGV---DVCKLLRTIMVKSAQWGSDPILGQYNFEDE 3072
Query 291 FTPFDVVRQCSGVTFQ 306
TP V Q GV Q
Sbjct 3073 LTPESVFNQVGGVRLQ 3088
>RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p87; Contains: RecName: Full=Papain-like protease; Short=PL-PRO; AltName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=p195; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; AltName: Full=Peptide HD2; AltName: Full=p41; Contains: RecName: Full=3C-like proteinase; Short=3CL-PRO; Short=3CLp; AltName: Full=Main protease; Short=Mpro; AltName: Full=Non-structural protein 5; Short=nsp5; AltName: Full=p33; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; AltName: Full=p34; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; AltName: Full=p9; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; AltName: Full=p24; Contains: RecName: Full=Viral protein genome-linked nsp9; AltName: Full=Non-structural protein 9; Short=nsp9; AltName: Full=RNA-capping enzyme subunit nsp9; AltName: Full=p10; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; AltName: Full=p16; Contains: RecName: Full=RNA-directed RNA polymerase nsp12; Short=Pol; Short=RdRp; AltName: Full=nsp12; AltName: Full=p100; Contains: RecName: Full=Helicase; Short=Hel; AltName: Full=nsp13; AltName: Full=p68; Contains: RecName: Full=Proofreading exoribonuclease; Short=ExoN; AltName: Full=Guanine-N7 methyltransferase; AltName: Full=Non-structural protein 14; Short=nsp14; AltName: Full=p58; Contains: RecName: Full=Uridylate-specific endoribonuclease; AltName: Full=NendoU; AltName: Full=Non-structural protein 15; Short=nsp15; AltName: Full=p39; Contains: RecName: Full=2'-O-methyl transferase; AltName: Full=Non-structural protein 16; Short=nsp16; AltName: Full=p35 [Avian infectious bronchitis virus (strain M41)]
Sequence ID: P0C6Y3.1 Length: 6631
Range 1: 2782 to 3088
Score:225 bits(573), Expect:3e-65,
Method:Compositional matrix adjust.,
Identities:126/316(40%), Positives:176/316(55%), Gaps:19/316(6%)
Query 1 SGFRKMAFPSGKVEGCMVQVTCGTTTLNGLWLDDTVYCPRHVVCTAEDMLNPNYDDLLIR 60
+GF+K+ PS VE C+V V+ LNGLWL D++YCPRHV+ + D+L
Sbjct 2782 AGFKKLVSPSSAVEKCIVSVSYRGNNLNGLWLGDSIYCPRHVL---GKFSGDQWGDVLNL 2838
Query 61 KSNHSFLVQAGN-VQLRVIGHSMQNCLLRLKVDTSNPKTPKYKFVRIQPGQTFSVLACYN 119
+NH F V N V L V+ ++ +L L+ +N +TPKYKFV+ G +F++ Y
Sbjct 2839 ANNHEFEVVTQNGVTLNVVSRRLKGAVLILQTAVANAETPKYKFVKANCGDSFTIACSYG 2898
Query 120 GSPSGVYQCAMRPNHTIKGSFLNGSCGSVGFNIDYDCVSFCYMHHMELPTGVHAGTDLEG 179
G+ G+Y MR N TI+ SFL G+CGSVGFNI+ V+F YMHH+ELP +H GTDL G
Sbjct 2899 GTVIGLYPVTMRSNGTIRASFLAGACGSVGFNIEKGVVNFFYMHHLELPNALHTGTDLMG 2958
Query 180 KFYGPFVDRQTAQAAGTDTTITLNVLAWLYAAVI-------NGDRWFLNRFTTTLNDFNL 232
+FYG +VD + AQ D +T N++AWLYAA+I + +W L T ++ D+N
Sbjct 2959 EFYGGYVDEEVAQRVPPDNLVTNNIVAWLYAAIISVKESSFSQPKW-LESTTVSIEDYNR 3017
Query 233 VAMKYNYEPLTQDHVDILGPLSAQTGIAVLDMCAALKELLQNGMN--GRTILGSTILEDE 290
A + P + + LSA TG+ D+C L+ ++ ILG EDE
Sbjct 3018 WASDNGFTPFSTSTA--ITKLSAITGV---DVCKLLRTIMVKSAQWGSDPILGQYNFEDE 3072
Query 291 FTPFDVVRQCSGVTFQ 306
TP V Q GV Q
Sbjct 3073 LTPESVFNQVGGVRLQ 3088