******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.5.1 (Release date: Sun Jan 29 10:33:12 2023 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= housekeeping.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ cds-WP_193703834.1 1.0000 100 rpoC 1.0000 100 rpoB 1.0000 100 rplL 1.0000 100 rplJ 1.0000 100 rplA 1.0000 100 rplK 1.0000 100 nusG 1.0000 100 tuf 1.0000 100 cds-WP_058885623.1 1.0000 100 cds-WP_058885629.1 1.0000 100 prmA 1.0000 100 cds-WP_232122865.1 1.0000 100 cds-WP_058885688.1 1.0000 100 cds-WP_101955185.1 1.0000 100 cds-WP_083501085.1 1.0000 100 greA 1.0000 100 cds-WP_058885749.1 1.0000 100 infC 1.0000 100 rpmI 1.0000 100 rplT 1.0000 100 cds-WP_058886312.1 1.0000 100 rpmF 1.0000 100 cds-WP_058885877.1 1.0000 100 cds-WP_058885878.1 1.0000 100 cds-WP_058885880.1 1.0000 100 cds-WP_058885908.1 1.0000 100 cds-WP_058885914.1 1.0000 100 dnaE 1.0000 100 cds-WP_232122964.1 1.0000 100 cds-WP_058886319.1 1.0000 100 cds-WP_193702428.1 1.0000 100 polA 1.0000 100 cds-WP_232119668.1 1.0000 100 atpG 1.0000 100 atpA 1.0000 100 atpH 1.0000 100 cds-WP_058886135.1 1.0000 100 atpE 1.0000 100 atpB 1.0000 100 cds-WP_232123044.1 1.0000 100 mfd 1.0000 100 cds-WP_232119056.1 1.0000 100 rimK 1.0000 100 rplU 1.0000 100 rpmA 1.0000 100 cds-WP_232123083.1 1.0000 100 cds-WP_193702578.1 1.0000 100 cds-WP_232123115.1 1.0000 100 cds-WP_193702622.1 1.0000 100 nusA 1.0000 100 infB 1.0000 100 cds-WP_101915013.1 1.0000 100 cds-WP_058884651.1 1.0000 100 rpsH 1.0000 100 rplF 1.0000 100 rplR 1.0000 100 rpsE 1.0000 100 rpmD 1.0000 100 rplO 1.0000 100 infA 1.0000 100 ykgO 1.0000 100 rpsM 1.0000 100 rpsK 1.0000 100 rpsD 1.0000 100 cds-WP_058884674.1 1.0000 100 rplQ 1.0000 100 nusB 1.0000 100 cds-WP_058884720.1 1.0000 100 holA 1.0000 100 rplS 1.0000 100 rpmH 1.0000 100 cds-WP_232123187.1 1.0000 100 cds-WP_172504886.1 1.0000 100 cds-WP_193702791.1 1.0000 100 efp 1.0000 100 cds-WP_232123228.1 1.0000 100 cds-WP_232123239.1 1.0000 100 cds-WP_058884920.1 1.0000 100 rpsF 1.0000 100 rpsR 1.0000 100 rplI 1.0000 100 cds-WP_058884968.1 1.0000 100 cds-WP_058885136.1 1.0000 100 ychF 1.0000 100 cds-WP_172505829.1 1.0000 100 cds-WP_058885236.1 1.0000 100 cds-WP_172505892.1 1.0000 100 cds-WP_058885264.1 1.0000 100 rho 1.0000 100 cds-WP_172505569.1 1.0000 100 rpsO 1.0000 100 dnaX 1.0000 100 rpsA 1.0000 100 cds-WP_058885032.1 1.0000 100 cds-WP_101955936.1 1.0000 100 cds-WP_193703486.1 1.0000 100 cds-WP_101955994.1 1.0000 100 cds-WP_058884614.1 1.0000 100 rpmG 1.0000 100 rpmB 1.0000 100 cds-WP_058884584.1 1.0000 100 dnaN 1.0000 100 cds-WP_058884545.1 1.0000 100 cds-WP_058884534.1 1.0000 100 cds-WP_058885474.1 1.0000 100 cds-WP_232123563.1 1.0000 100 cds-WP_058885514.1 1.0000 100 cds-WP_101914703.1 1.0000 100 cds-WP_058885536.1 1.0000 100 cds-WP_232123576.1 1.0000 100 cds-WP_058885378.1 1.0000 100 rpsN 1.0000 100 rplE 1.0000 100 rplX 1.0000 100 rplN 1.0000 100 rpsQ 1.0000 100 rpmC 1.0000 100 rplP 1.0000 100 rpsC 1.0000 100 rplV 1.0000 100 rpsS 1.0000 100 rplB 1.0000 100 rplW 1.0000 100 rplD 1.0000 100 rplC 1.0000 100 rpsJ 1.0000 100 fusA 1.0000 100 rpsG 1.0000 100 rpsL 1.0000 100 cds-WP_058884150.1 1.0000 100 atpD 1.0000 100 cds-WP_058884159.1 1.0000 100 cds-WP_058884193.1 1.0000 100 cds-WP_058884194.1 1.0000 100 cds-WP_193703221.1 1.0000 100 rpsT 1.0000 100 cds-WP_232123625.1 1.0000 100 rpoN 1.0000 100 tsf 1.0000 100 rpsB 1.0000 100 rpsI 1.0000 100 rplM 1.0000 100 cds-WP_193706139.1 1.0000 100 cds-WP_193704945.1 1.0000 100 cds-WP_232123678.1 1.0000 100 cds-WP_232123679.1 1.0000 100 cds-WP_100945805.1 1.0000 100 cds-WP_058885312.1 1.0000 100 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme housekeeping.fasta -dna -nmotifs 3 -minw 5 -maxw 10 model: mod= zoops nmotifs= 3 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 5 maxw= 10 nsites: minsites= 2 maxsites= 149 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 14900 N= 149 sample: seed= 0 hsfrac= 0 searchsize= 14900 norand= no csites= 1000 Letter frequencies in dataset: A 0.344 C 0.153 G 0.158 T 0.345 Background letter frequencies (from file dataset with add-one prior applied): A 0.344 C 0.153 G 0.158 T 0.345 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF CTTCGSCAW MEME-1 width = 9 sites = 12 llr = 121 E-value = 1.5e+002 ******************************************************************************** -------------------------------------------------------------------------------- Motif CTTCGSCAW MEME-1 Description -------------------------------------------------------------------------------- Simplified A :1::::3a6 pos.-specific C a:19178:: probability G ::3193::: matrix T :97:::::4 bits 2.7 * 2.4 * 2.2 * ** 1.9 * *** Relative 1.6 * ***** Entropy 1.4 * ***** (14.6 bits) 1.1 ** ***** 0.8 ******** 0.5 ********* 0.3 ********* 0.0 --------- Multilevel CTTCGCCAA consensus G GA T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTTCGSCAW MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- --------- cds-WP_193702428.1 7 1.22e-06 CATTTA CTTCGCCAA TTTCATTTAC cds-WP_058885878.1 17 1.22e-06 CCTAATAATT CTTCGCCAA CAGCCATTGC cds-WP_058885536.1 22 3.00e-06 TTTTCAAAAA CTTCGCCAT ATTTATCTTC infB 75 5.40e-06 ATTCCGCTTC CTGCGGCAA AGGCTAGGTA rpoN 80 6.66e-06 AATTCAAAAA CTTCGGCAT CAATATTATG cds-WP_058886135.1 33 7.78e-06 TCATTGTCTT CTCCGCCAA TAATTCCGTT cds-WP_232123678.1 85 1.29e-05 TCCGTTTCTA CTGCGCAAA CGAGCTA rplE 44 2.11e-05 AAGTTCAGCA CTTGGCCAA GCAGCAATTA rpsN 42 2.11e-05 GCCTTGTCAG CATCGCCAA TTTTGTCCAT cds-WP_058884720.1 85 3.51e-05 ATTAACGCTT CTTCGGAAT TATGGAA nusA 4 3.51e-05 TTA CTTCGGAAT TGCTAAAATG polA 61 3.51e-05 GTTGATTTTC CTGCCCCAT TTTTTCCTAT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTTCGSCAW MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- cds-WP_193702428.1 1.2e-06 6_[+1]_85 cds-WP_058885878.1 1.2e-06 16_[+1]_75 cds-WP_058885536.1 3e-06 21_[+1]_70 infB 5.4e-06 74_[+1]_17 rpoN 6.7e-06 79_[+1]_12 cds-WP_058886135.1 7.8e-06 32_[+1]_59 cds-WP_232123678.1 1.3e-05 84_[+1]_7 rplE 2.1e-05 43_[+1]_48 rpsN 2.1e-05 41_[+1]_50 cds-WP_058884720.1 3.5e-05 84_[+1]_7 nusA 3.5e-05 3_[+1]_88 polA 3.5e-05 60_[+1]_31 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTTCGSCAW MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CTTCGSCAW width=9 seqs=12 cds-WP_193702428.1 ( 7) CTTCGCCAA 1 cds-WP_058885878.1 ( 17) CTTCGCCAA 1 cds-WP_058885536.1 ( 22) CTTCGCCAT 1 infB ( 75) CTGCGGCAA 1 rpoN ( 80) CTTCGGCAT 1 cds-WP_058886135.1 ( 33) CTCCGCCAA 1 cds-WP_232123678.1 ( 85) CTGCGCAAA 1 rplE ( 44) CTTGGCCAA 1 rpsN ( 42) CATCGCCAA 1 cds-WP_058884720.1 ( 85) CTTCGGAAT 1 nusA ( 4) CTTCGGAAT 1 polA ( 61) CTGCCCCAT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTTCGSCAW MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 9 n= 13708 bayes= 11.2567 E= 1.5e+002 -1023 271 -1023 -1023 -204 -1023 -1023 141 -1023 -87 66 95 -1023 258 -92 -1023 -1023 -87 254 -1023 -1023 212 108 -1023 -46 229 -1023 -1023 154 -1023 -1023 -1023 76 -1023 -1023 27 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTTCGSCAW MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 9 nsites= 12 E= 1.5e+002 0.000000 1.000000 0.000000 0.000000 0.083333 0.000000 0.000000 0.916667 0.000000 0.083333 0.250000 0.666667 0.000000 0.916667 0.083333 0.000000 0.000000 0.083333 0.916667 0.000000 0.000000 0.666667 0.333333 0.000000 0.250000 0.750000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.583333 0.000000 0.000000 0.416667 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTTCGSCAW MEME-1 regular expression -------------------------------------------------------------------------------- CT[TG]CG[CG][CA]A[AT] -------------------------------------------------------------------------------- Time 6.04 secs. ******************************************************************************** ******************************************************************************** MOTIF CCAGTGCGC MEME-2 width = 9 sites = 2 llr = 30 E-value = 2.4e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif CCAGTGCGC MEME-2 Description -------------------------------------------------------------------------------- Simplified A ::a:::::: pos.-specific C aa::::a:a probability G :::a:a:a: matrix T ::::a:::: bits 2.7 ** * **** 2.4 ** * **** 2.2 ** * **** 1.9 ** * **** Relative 1.6 ********* Entropy 1.4 ********* (21.9 bits) 1.1 ********* 0.8 ********* 0.5 ********* 0.3 ********* 0.0 --------- Multilevel CCAGTGCGC consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCAGTGCGC MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- --------- cds-WP_058884584.1 84 2.57e-07 TTTCTTGTAA CCAGTGCGC TACTTTAT rpoC 70 2.57e-07 TTTCTTGTAA CCAGTGCGC TACTTTATAC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCAGTGCGC MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- cds-WP_058884584.1 2.6e-07 83_[+2]_8 rpoC 2.6e-07 69_[+2]_22 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCAGTGCGC MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CCAGTGCGC width=9 seqs=2 cds-WP_058884584.1 ( 84) CCAGTGCGC 1 rpoC ( 70) CCAGTGCGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCAGTGCGC MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 9 n= 13708 bayes= 12.7425 E= 2.4e+003 -765 270 -765 -765 -765 270 -765 -765 153 -765 -765 -765 -765 -765 266 -765 -765 -765 -765 153 -765 -765 266 -765 -765 270 -765 -765 -765 -765 266 -765 -765 270 -765 -765 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCAGTGCGC MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 9 nsites= 2 E= 2.4e+003 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCAGTGCGC MEME-2 regular expression -------------------------------------------------------------------------------- CCAGTGCGC -------------------------------------------------------------------------------- Time 11.78 secs. ******************************************************************************** ******************************************************************************** MOTIF CAGCCACC MEME-3 width = 8 sites = 2 llr = 27 E-value = 3.5e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif CAGCCACC MEME-3 Description -------------------------------------------------------------------------------- Simplified A :a:::a:: pos.-specific C a::aa:aa probability G ::a::::: matrix T :::::::: bits 2.7 * *** ** 2.4 * *** ** 2.2 * *** ** 1.9 * *** ** Relative 1.6 ******** Entropy 1.4 ******** (19.3 bits) 1.1 ******** 0.8 ******** 0.5 ******** 0.3 ******** 0.0 -------- Multilevel CAGCCACC consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGCCACC MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- rplF 81 1.57e-06 AATTGGACAA CAGCCACC AACTGGAATT cds-WP_232119668.1 55 1.57e-06 TAAATATCAA CAGCCACC TCAACTTCCT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGCCACC MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- rplF 1.6e-06 80_[+3]_12 cds-WP_232119668.1 1.6e-06 54_[+3]_38 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGCCACC MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CAGCCACC width=8 seqs=2 rplF ( 81) CAGCCACC 1 cds-WP_232119668.1 ( 55) CAGCCACC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGCCACC MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 13857 bayes= 12.7581 E= 3.5e+003 -765 270 -765 -765 153 -765 -765 -765 -765 -765 266 -765 -765 270 -765 -765 -765 270 -765 -765 153 -765 -765 -765 -765 270 -765 -765 -765 270 -765 -765 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGCCACC MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 2 E= 3.5e+003 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGCCACC MEME-3 regular expression -------------------------------------------------------------------------------- CAGCCACC -------------------------------------------------------------------------------- Time 17.51 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- cds-WP_193703834.1 9.40e-01 100 rpoC 8.35e-04 69_[+2(2.57e-07)]_22 rpoB 2.51e-01 100 rplL 1.00e+00 100 rplJ 5.98e-01 100 rplA 6.63e-01 100 rplK 4.38e-01 100 nusG 1.00e+00 100 tuf 9.95e-01 100 cds-WP_058885623.1 1.81e-02 100 cds-WP_058885629.1 5.88e-01 100 prmA 7.95e-01 100 cds-WP_232122865.1 9.96e-01 100 cds-WP_058885688.1 2.95e-01 100 cds-WP_101955185.1 6.31e-01 100 cds-WP_083501085.1 9.69e-01 100 greA 3.73e-01 100 cds-WP_058885749.1 9.33e-01 100 infC 3.83e-01 100 rpmI 3.38e-01 100 rplT 7.22e-01 100 cds-WP_058886312.1 6.29e-01 100 rpmF 3.90e-01 100 cds-WP_058885877.1 4.61e-01 100 cds-WP_058885878.1 1.88e-04 16_[+1(1.22e-06)]_75 cds-WP_058885880.1 3.12e-01 100 cds-WP_058885908.1 5.50e-01 100 cds-WP_058885914.1 9.97e-01 100 dnaE 9.61e-01 100 cds-WP_232122964.1 4.79e-01 100 cds-WP_058886319.1 3.60e-01 100 cds-WP_193702428.1 4.53e-03 6_[+1(1.22e-06)]_85 polA 8.36e-03 60_[+1(3.51e-05)]_31 cds-WP_232119668.1 1.73e-03 30_[+3(5.93e-05)]_16_[+3(1.57e-06)]_\ 38 atpG 8.60e-01 100 atpA 1.88e-01 100 atpH 7.17e-01 100 cds-WP_058886135.1 5.98e-03 32_[+1(7.78e-06)]_59 atpE 5.43e-01 100 atpB 2.86e-01 100 cds-WP_232123044.1 9.77e-01 100 mfd 1.00e+00 100 cds-WP_232119056.1 7.95e-01 100 rimK 1.50e-01 100 rplU 1.00e+00 100 rpmA 9.77e-01 100 cds-WP_232123083.1 7.34e-01 100 cds-WP_193702578.1 3.24e-01 100 cds-WP_232123115.1 2.13e-01 100 cds-WP_193702622.1 6.84e-01 100 nusA 7.47e-02 3_[+1(3.51e-05)]_88 infB 2.48e-03 74_[+1(5.40e-06)]_17 cds-WP_101915013.1 5.61e-01 100 cds-WP_058884651.1 4.38e-01 100 rpsH 5.32e-01 100 rplF 5.06e-04 80_[+3(1.57e-06)]_12 rplR 7.87e-01 100 rpsE 7.58e-01 100 rpmD 6.83e-01 100 rplO 8.99e-01 100 infA 5.41e-02 100 ykgO 6.32e-01 100 rpsM 1.00e+00 100 rpsK 9.05e-01 100 rpsD 2.63e-01 100 cds-WP_058884674.1 2.63e-01 100 rplQ 8.54e-01 100 nusB 9.48e-01 100 cds-WP_058884720.1 5.55e-02 84_[+1(3.51e-05)]_7 holA 5.07e-01 100 rplS 3.71e-01 100 rpmH 8.96e-01 100 cds-WP_232123187.1 3.99e-01 100 cds-WP_172504886.1 8.33e-01 100 cds-WP_193702791.1 9.77e-01 100 efp 4.90e-01 100 cds-WP_232123228.1 8.49e-01 100 cds-WP_232123239.1 5.09e-01 100 cds-WP_058884920.1 9.44e-01 100 rpsF 3.65e-01 100 rpsR 7.87e-01 100 rplI 6.94e-01 100 cds-WP_058884968.1 1.00e+00 100 cds-WP_058885136.1 1.87e-01 100 ychF 3.82e-01 100 cds-WP_172505829.1 3.82e-01 100 cds-WP_058885236.1 9.82e-01 100 cds-WP_172505892.1 6.46e-01 100 cds-WP_058885264.1 9.38e-01 100 rho 2.55e-01 100 cds-WP_172505569.1 8.84e-01 100 rpsO 5.65e-01 100 dnaX 3.00e-01 100 rpsA 4.74e-01 100 cds-WP_058885032.1 4.91e-01 100 cds-WP_101955936.1 9.70e-01 100 cds-WP_193703486.1 9.57e-01 100 cds-WP_101955994.1 9.64e-01 100 cds-WP_058884614.1 9.50e-01 100 rpmG 4.01e-01 100 rpmB 7.04e-01 100 cds-WP_058884584.1 8.35e-04 83_[+2(2.57e-07)]_8 dnaN 9.80e-01 100 cds-WP_058884545.1 7.62e-01 100 cds-WP_058884534.1 5.80e-01 100 cds-WP_058885474.1 4.13e-01 100 cds-WP_232123563.1 1.31e-01 100 cds-WP_058885514.1 3.82e-01 100 cds-WP_101914703.1 9.91e-01 100 cds-WP_058885536.1 9.32e-03 21_[+1(3.00e-06)]_70 cds-WP_232123576.1 1.68e-01 100 cds-WP_058885378.1 5.96e-01 100 rpsN 1.32e-02 41_[+1(2.11e-05)]_50 rplE 2.16e-02 43_[+1(2.11e-05)]_48 rplX 9.80e-01 100 rplN 7.54e-01 100 rpsQ 9.99e-01 100 rpmC 8.16e-01 100 rplP 7.68e-01 100 rpsC 9.00e-01 100 rplV 2.99e-01 100 rpsS 8.92e-01 100 rplB 9.94e-01 100 rplW 9.93e-01 100 rplD 9.57e-01 100 rplC 9.90e-01 100 rpsJ 2.75e-01 100 fusA 4.88e-01 100 rpsG 9.86e-01 100 rpsL 5.96e-01 100 cds-WP_058884150.1 2.31e-02 100 atpD 6.70e-01 100 cds-WP_058884159.1 9.85e-01 100 cds-WP_058884193.1 4.51e-01 100 cds-WP_058884194.1 5.22e-01 100 cds-WP_193703221.1 8.36e-01 100 rpsT 3.14e-01 100 cds-WP_232123625.1 6.74e-01 100 rpoN 1.59e-02 79_[+1(6.66e-06)]_12 tsf 2.30e-01 100 rpsB 7.64e-01 100 rpsI 9.99e-01 100 rplM 9.86e-01 100 cds-WP_193706139.1 9.24e-01 100 cds-WP_193704945.1 4.87e-01 100 cds-WP_232123678.1 9.76e-04 84_[+1(1.29e-05)]_7 cds-WP_232123679.1 9.98e-01 100 cds-WP_100945805.1 4.00e-01 100 cds-WP_058885312.1 2.26e-01 100 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (3) found. ******************************************************************************** CPU: kodomo ********************************************************************************