########################################
# Program: needle
# Rundate: Wed 10 Sep 2014 19:41:42
# Commandline: needle
#    [-asequence] a_seq.txt
#    [-bsequence] b_seq.txt
#    [-outfile] out_seq_needle_orig.txt
# Align_format: srspair
# Report_file: out_seq_needle_orig.txt
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: A
# 2: B
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 109
# Identity:      18/109 (16.5%)
# Similarity:    29/109 (26.6%)
# Gaps:          48/109 (44.0%)
# Score: 37.5
# 
#
#=======================================

A                  1 -----------agagkagegEIPAPLAGTVSKILVKEGDTVKAGQTVLVL     39
                                |.:        |....|||.:...|.|:.:..|..:..:
B                  1 sypphmQVLLPAls--------ptmtMGTVQRWEKKVGEKLSEGDLLAEI     42

A                 40 EAMKMETEINAPTDGKVEKVLVKE--RDAVQGGQGLIKIG----------     77
                     |..|.........:|.:.|:||.|  ||        :.:|          
B                 43 ETDKATIGFEVQEEGYLAKILVPEGTRd--------VPLGTPLCIIVeke     84

A                 77 ---------     77
                              
B                 85 adisafady     93


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