########################################
# Program: needle
# Rundate: Wed 10 Sep 2014 19:55:55
# Commandline: needle
#    [-asequence] pr10_ng_1.txt
#    [-bsequence] pr10_ng_2.txt
#    [-outfile] out_seq_ng_needle_orig.txt
# Align_format: srspair
# Report_file: out_seq_ng_needle_orig.txt
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: NP_560184.1
# 2: YP_003707477.1
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 435
# Identity:      57/435 (13.1%)
# Similarity:   105/435 (24.1%)
# Gaps:         217/435 (49.9%)
# Score: 48.5
# 
#
#=======================================

NP_560184.1        1 MRAAAFSTPGLENLKLVEAETPRPGPGEVLIRVKYAGVNPLDYNVVAGAV     50
                                                                       
YP_003707477.      0 --------------------------------------------------      0

NP_560184.1       51 KASPMPHIPGSEFAGVVEEAGPGVTGVSRGDPVVVYNRLYCGHCRQCLTG    100
                                                                       
YP_003707477.      0 --------------------------------------------------      0

NP_560184.1      101 WTQMCE------VTGGGIIGIVTQGGYAEYAVVPAKNAVATRADL-----    139
                        |.:      ..|......:.:|||.::    .|.|.||..:|     
YP_003707477.      1 ---MSDNLTDLPGVGPSTAEKLAEGGYIDF----MKIATATVGELTDIEG     43

NP_560184.1      140 ---KEAATLPIGALTAWNMAYRASI--------------SPGEKVAVVGA    172
                        |.||.:.:||....::.:::.|              :.||...|:|.
YP_003707477.     44 ISEKAAAKMIMGARDLCDLGFKSGIDLLKQRSTVWKLSTNSGELDNVLGG     93

NP_560184.1      173 TGNVGIYAVQFAKLLGGEVYAISRRKAKVESILKSAGADAVLTPDEAKS-    221
                         |:.:....:..|  |:...:.:...:|.:.....|.:...:.|.| 
YP_003707477.     94 ----GLESQSVTEFAG--VFGSGKTQIMHQSCVNLQRPDCIFFDESAVSD    137

NP_560184.1      222 ---AAPFDVVLDPTGSASWDLSFGV---LGRGGRYVTAGALTGAEVRLDL    265
                        |||..|.:|..|:...:....:   .|..|:.:............|:
YP_003707477.    138 EELAAPKAVYIDTEGTFRPERIMQMAEHAGIEGQTILDNTFVARAYNSDM    187

NP_560184.1      266 RRLY------------GMQILVIG--------------------------    277
                     :.|:            .::::||.                          
YP_003707477.    188 QMLFAEKIEDLINDGNNIKLVVIDSLTSTFRNEYTGRGKLAERQQKLGRH    237

NP_560184.1      278 -ATGGRRAD-FNTVVRLLE--AGRIKAFL---------HNVYPLADVRKA    314
                      ||..:.|| ||.||.:..  :.:..||.         |.|...|..|..
YP_003707477.    238 MATLNKLADLFNCVVLVTNQVSAKPDAFFGMAEQAIGGHIVGHAATFRFF    287

NP_560184.1      315 LEELRSPERVGKVLIAP------------------    331
                     :.:.:..:||.|:..:|                  
YP_003707477.    288 VRKGKGDKRVAKLYDSPHLPDSEAIFRITEKGIQD    322


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