RID: 8WKAJ62M013 Job Title:BAC09029:photosystem II D1 protein [Thermosynechococcus... Program: BLASTP Query: RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; AltName: Full=p270 nonstructural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Sindbis virus] ID: P03317.2(amino acid) Length: 540 Database: swissprot Non-redundant UniProtKB/SwissProt sequences Sequences producing significant alignments: Scientific Common Max Total Query E Per. Acc. Description Name Name Taxid Score Score cover Value Ident Len Accession RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Sindbis virus NA 11034 1079 1079 100% 0.0 100.00 2513 P03317.2 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Ockelbo virus NA 31699 1055 1055 100% 0.0 97.96 2515 P27283.2 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Aura virus NA 44158 846 846 95% 0.0 77.67 2499 Q86924.3 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Getah virus NA 59300 719 719 88% 0.0 68.55 2467 Q5Y389.3 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Sagiyama virus NA 59303 718 718 88% 0.0 68.55 2467 Q9JGL0.3 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Ross river v... NA 11031 712 712 88% 0.0 67.65 2480 P13887.2 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Semliki Fore... NA 11033 703 703 94% 0.0 65.23 2432 P08411.2 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Chikungunya ... NA 371095 687 687 88% 0.0 65.07 2474 Q5XXP4.1 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Mayaro virus... NA 374990 685 685 88% 0.0 64.64 2437 Q8QZ73.3 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... O'nyong-nyon... NA 374989 684 684 94% 0.0 64.08 2513 O90368.1 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... O'nyong-nyon... NA 11028 684 684 94% 0.0 64.27 2514 P13886.2 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Igbo Ora virus NA 79899 679 679 94% 0.0 63.69 2513 O90370.1 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Barmah Fores... NA 11020 676 676 91% 0.0 62.83 2411 P87515.3 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Chikungunya ... NA 371094 675 675 86% 0.0 64.82 2474 Q8JUX6.1 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Venezuelan e... NA 11038 656 656 95% 0.0 60.89 2493 P27282.3 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Venezuelan e... NA 36385 656 656 95% 0.0 60.69 2493 P36328.2 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Venezuelan e... NA 36382 656 656 95% 0.0 60.50 2485 P36327.3 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Western equi... NA 11039 652 652 87% 0.0 63.87 2467 P13896.3 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Venezuelan e... NA 36384 649 649 95% 0.0 60.31 2499 Q9WJC7.3 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Eastern equi... NA 374596 647 647 88% 0.0 64.09 2471 Q306W6.3 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Eastern equi... NA 374597 647 647 88% 0.0 63.67 2474 Q306W8.3 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Venezuelan e... NA 376610 647 647 95% 0.0 60.12 2497 Q8V294.3 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Eastern equi... NA 374598 645 645 88% 0.0 63.81 2494 Q4QXJ8.3 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Salmon pancr... NA 84589 417 417 91% 2e-128 44.75 2601 Q8JJX1.1 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Sleeping dis... NA 78540 414 414 84% 1e-127 46.44 2593 Q8QL53.1 Alignments: >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; AltName: Full=p270 nonstructural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Sindbis virus] Sequence ID: P03317.2 Length: 2513 Range 1: 1 to 540 Score:1079 bits(2790), Expect:0.0, Method:Compositional matrix adjust., Identities:540/540(100%), Positives:540/540(100%), Gaps:0/540(0%) Query 1 MEKPVVNVDVDPQSPFVVQLQKSFPQFEVVAQQVTPNDHANARAFSHLASKLIELEVPTT 60 MEKPVVNVDVDPQSPFVVQLQKSFPQFEVVAQQVTPNDHANARAFSHLASKLIELEVPTT Sbjct 1 MEKPVVNVDVDPQSPFVVQLQKSFPQFEVVAQQVTPNDHANARAFSHLASKLIELEVPTT 60 Query 61 ATILDIGSAPARRMFSEHQYHCVCPMRSPEDPDRMMKYASKLAEKACKITNKNLHEKIKD 120 ATILDIGSAPARRMFSEHQYHCVCPMRSPEDPDRMMKYASKLAEKACKITNKNLHEKIKD Sbjct 61 ATILDIGSAPARRMFSEHQYHCVCPMRSPEDPDRMMKYASKLAEKACKITNKNLHEKIKD 120 Query 121 LRTVLDTPDAETPSLCFHNDVTCNMRAEYSVMQDVYINAPGTIYHQAMKGVRTLYWIGFD 180 LRTVLDTPDAETPSLCFHNDVTCNMRAEYSVMQDVYINAPGTIYHQAMKGVRTLYWIGFD Sbjct 121 LRTVLDTPDAETPSLCFHNDVTCNMRAEYSVMQDVYINAPGTIYHQAMKGVRTLYWIGFD 180 Query 181 TTQFMFSAMAGSYPAYNTNWADEKVLEARNIGLCSTKLSEGRTGKLSIMRKKELKPGSRV 240 TTQFMFSAMAGSYPAYNTNWADEKVLEARNIGLCSTKLSEGRTGKLSIMRKKELKPGSRV Sbjct 181 TTQFMFSAMAGSYPAYNTNWADEKVLEARNIGLCSTKLSEGRTGKLSIMRKKELKPGSRV 240 Query 241 YFSVGSTLYPEHRASLQSWHLPSVFHLNGKQSYTCRCDTVVSCEGYVVKKITISPGITGE 300 YFSVGSTLYPEHRASLQSWHLPSVFHLNGKQSYTCRCDTVVSCEGYVVKKITISPGITGE Sbjct 241 YFSVGSTLYPEHRASLQSWHLPSVFHLNGKQSYTCRCDTVVSCEGYVVKKITISPGITGE 300 Query 301 TVGYAVTHNSEGFLLCKVTDTVKGERVSFPVCTYIPATICDQMTGIMATDISPDDAQKLL 360 TVGYAVTHNSEGFLLCKVTDTVKGERVSFPVCTYIPATICDQMTGIMATDISPDDAQKLL Sbjct 301 TVGYAVTHNSEGFLLCKVTDTVKGERVSFPVCTYIPATICDQMTGIMATDISPDDAQKLL 360 Query 361 VGLNQRIVINGRTNRNTNTMQNYLLPIIAQGFSKWAKERKDDLDNEKMLGTRERKLTYGC 420 VGLNQRIVINGRTNRNTNTMQNYLLPIIAQGFSKWAKERKDDLDNEKMLGTRERKLTYGC Sbjct 361 VGLNQRIVINGRTNRNTNTMQNYLLPIIAQGFSKWAKERKDDLDNEKMLGTRERKLTYGC 420 Query 421 LWAFRTKKVHSFYRPPGTQTCVKVPASFSAFPMSSVWTTSLPMSLRQKLKLALQPKKEEK 480 LWAFRTKKVHSFYRPPGTQTCVKVPASFSAFPMSSVWTTSLPMSLRQKLKLALQPKKEEK Sbjct 421 LWAFRTKKVHSFYRPPGTQTCVKVPASFSAFPMSSVWTTSLPMSLRQKLKLALQPKKEEK 480 Query 481 LLQVSEELVMEAKAAFEDaqeearaeklrealPPLVADKGIeaaaevvceveGLQADIGA 540 LLQVSEELVMEAKAAFEDAQEEARAEKLREALPPLVADKGIEAAAEVVCEVEGLQADIGA Sbjct 481 LLQVSEELVMEAKAAFEDAQEEARAEKLREALPPLVADKGIEAAAEVVCEVEGLQADIGA 540 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Ockelbo virus] Sequence ID: P27283.2 Length: 2515 Range 1: 1 to 540 Score:1055 bits(2728), Expect:0.0, Method:Compositional matrix adjust., Identities:529/540(98%), Positives:533/540(98%), Gaps:0/540(0%) Query 1 MEKPVVNVDVDPQSPFVVQLQKSFPQFEVVAQQVTPNDHANARAFSHLASKLIELEVPTT 60 MEKPVVNVDVDPQSPFVVQLQKSFPQFEVVAQQ TPNDHANARAFSHLASKLIELEVPTT Sbjct 1 MEKPVVNVDVDPQSPFVVQLQKSFPQFEVVAQQATPNDHANARAFSHLASKLIELEVPTT 60 Query 61 ATILDIGSAPARRMFSEHQYHCVCPMRSPEDPDRMMKYASKLAEKACKITNKNLHEKIKD 120 ATILDIGSAPARRMFSEHQYHCVCPMRSPEDPDRMMKYASKLAEKACKITNKNLHEKIKD Sbjct 61 ATILDIGSAPARRMFSEHQYHCVCPMRSPEDPDRMMKYASKLAEKACKITNKNLHEKIKD 120 Query 121 LRTVLDTPDAETPSLCFHNDVTCNMRAEYSVMQDVYINAPGTIYHQAMKGVRTLYWIGFD 180 LRTVLDTPDAETPSLCFHNDVTCN RAEYSVMQDVYINAPGTIYHQAMKGVRTLYWIGFD Sbjct 121 LRTVLDTPDAETPSLCFHNDVTCNTRAEYSVMQDVYINAPGTIYHQAMKGVRTLYWIGFD 180 Query 181 TTQFMFSAMAGSYPAYNTNWADEKVLEARNIGLCSTKLSEGRTGKLSIMRKKELKPGSRV 240 TTQFMFSAMAGSYPAYNTNWADEKVLEARNIGLCSTKLSEGRTGKLSIMRKKELKPGSRV Sbjct 181 TTQFMFSAMAGSYPAYNTNWADEKVLEARNIGLCSTKLSEGRTGKLSIMRKKELKPGSRV 240 Query 241 YFSVGSTLYPEHRASLQSWHLPSVFHLNGKQSYTCRCDTVVSCEGYVVKKITISPGITGE 300 YFSVGSTLYPEHRASLQSWHLPSVFHL GKQSYTCRCDTVVSCEGYVVKKITISPGITGE Sbjct 241 YFSVGSTLYPEHRASLQSWHLPSVFHLKGKQSYTCRCDTVVSCEGYVVKKITISPGITGE 300 Query 301 TVGYAVTHNSEGFLLCKVTDTVKGERVSFPVCTYIPATICDQMTGIMATDISPDDAQKLL 360 TVGYAVT+NSEGFLLCKVTDTVKGERVSFPVCTYIPATICDQMTGIMATDISPDDAQKLL Sbjct 301 TVGYAVTNNSEGFLLCKVTDTVKGERVSFPVCTYIPATICDQMTGIMATDISPDDAQKLL 360 Query 361 VGLNQRIVINGRTNRNTNTMQNYLLPIIAQGFSKWAKERKDDLDNEKMLGTRERKLTYGC 420 VGLNQRIVING+TNRNTNTMQNYLLP IAQGFSKWAKERK+DLDNEKMLGTRERKLTYGC Sbjct 361 VGLNQRIVINGKTNRNTNTMQNYLLPTIAQGFSKWAKERKEDLDNEKMLGTRERKLTYGC 420 Query 421 LWAFRTKKVHSFYRPPGTQTCVKVPASFSAFPMSSVWTTSLPMSLRQKLKLALQPKKEEK 480 LWAFRTKKVHSFYRPPGTQT VKVPASFSAFPMSSVWTTSLPMSLRQK+KLALQPKKEEK Sbjct 421 LWAFRTKKVHSFYRPPGTQTSVKVPASFSAFPMSSVWTTSLPMSLRQKMKLALQPKKEEK 480 Query 481 LLQVSEELVMEAKAAFEDaqeearaeklrealPPLVADKGIeaaaevvceveGLQADIGA 540 LLQV EELVMEAKAAFEDAQEEARAEKLREALPPLVADK IEAAAEVVCEVEGLQADIGA Sbjct 481 LLQVPEELVMEAKAAFEDAQEEARAEKLREALPPLVADKDIEAAAEVVCEVEGLQADIGA 540 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Aura virus] Sequence ID: Q86924.3 Length: 2499 Range 1: 1 to 515 Score:846 bits(2185), Expect:0.0, Method:Compositional matrix adjust., Identities:400/515(78%), Positives:452/515(87%), Gaps:0/515(0%) Query 1 MEKPVVNVDVDPQSPFVVQLQKSFPQFEVVAQQVTPNDHANARAFSHLASKLIELEVPTT 60 MEKP V+VDVDPQSPFV+QLQKSFPQFE+VAQQVTPNDHANARAFSHLASKLIE E+PT+ Sbjct 1 MEKPTVHVDVDPQSPFVLQLQKSFPQFEIVAQQVTPNDHANARAFSHLASKLIEHEIPTS 60 Query 61 ATILDIGSAPARRMFSEHQYHCVCPMRSPEDPDRMMKYASKLAEKACKITNKNLHEKIKD 120 TILDIGSAPARRM+SEH+YHCVCPMRSPEDPDR+M YAS+LA+KA +ITNK LH+K+ D Sbjct 61 VTILDIGSAPARRMYSEHKYHCVCPMRSPEDPDRLMNYASRLADKAGEITNKRLHDKLAD 120 Query 121 LRTVLDTPDAETPSLCFHNDVTCNMRAEYSVMQDVYINAPGTIYHQAMKGVRTLYWIGFD 180 L++VL++PDAET ++CFHNDV C AE SVMQ+VYINAP TIYHQA+KGVR LYWIGFD Sbjct 121 LKSVLESPDAETGTICFHNDVICRTTAEVSVMQNVYINAPSTIYHQALKGVRKLYWIGFD 180 Query 181 TTQFMFSAMAGSYPAYNTNWADEKVLEARNIGLCSTKLSEGRTGKLSIMRKKELKPGSRV 240 TTQFMFS+MAGSYP+YNTNWADE+VLEARNIGLCSTKL EG GKLS RKK LKPG+ V Sbjct 181 TTQFMFSSMAGSYPSYNTNWADERVLEARNIGLCSTKLREGTMGKLSTFRKKALKPGTNV 240 Query 241 YFSVGSTLYPEHRASLQSWHLPSVFHLNGKQSYTCRCDTVVSCEGYVVKKITISPGITGE 300 YFSVGSTLYPE+RA LQSWHLPSVFHL GKQS+TCRCDT V+CEGYVVKKITISPGITG Sbjct 241 YFSVGSTLYPENRADLQSWHLPSVFHLKGKQSFTCRCDTAVNCEGYVVKKITISPGITGR 300 Query 301 TVGYAVTHNSEGFLLCKVTDTVKGERVSFPVCTYIPATICDQMTGIMATDISPDDAQKLL 360 Y VT+NSEGFLLCK+TDTVKGERVSFPVCTYIP +ICDQMTGI+ATDI P+DAQKLL Sbjct 301 VNRYTVTNNSEGFLLCKITDTVKGERVSFPVCTYIPPSICDQMTGILATDIQPEDAQKLL 360 Query 361 VGLNQRIVINGRTNRNTNTMQNYLLPIIAQGFSKWAKERKDDLDNEKMLGTRERKLTYGC 420 VGLNQRIV+NG+TNRNTNTMQNYLLP +A G SKWAKERK D +EK L RERKL +GC Sbjct 361 VGLNQRIVVNGKTNRNTNTMQNYLLPAVATGLSKWAKERKADCSDEKPLNVRERKLAFGC 420 Query 421 LWAFRTKKVHSFYRPPGTQTCVKVPASFSAFPMSSVWTTSLPMSLRQKLKLALQPKKEEK 480 LWAF+TKK+HSFYRPPGTQT VKV A FSAFPMSSVWTTSLPMSLRQK+KL L K + Sbjct 421 LWAFKTKKIHSFYRPPGTQTIVKVAAEFSAFPMSSVWTTSLPMSLRQKVKLLLVKKTNKP 480 Query 481 LLQVSEELVMEAKAAFEDaqeearaeklrealPPL 515 ++ +++ V A+ A+ +A E A AE+ +ALPPL Sbjct 481 VVTITDTAVKNAQEAYNEAVETAEAEEKAKALPPL 515 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Getah virus] Sequence ID: Q5Y389.3 Length: 2467 Range 1: 3 to 479 Score:719 bits(1856), Expect:0.0, Method:Compositional matrix adjust., Identities:327/477(69%), Positives:400/477(83%), Gaps:1/477(0%) Query 6 VNVDVDPQSPFVVQLQKSFPQFEVVAQQVTPNDHANARAFSHLASKLIELEVPTTATILD 65 V VDV+ SPF+ LQK+FP FEV +QQVTPNDHANARAFSHLA+KLIE EVPT TILD Sbjct 3 VTVDVEADSPFLKALQKAFPAFEVESQQVTPNDHANARAFSHLATKLIEQEVPTGVTILD 62 Query 66 IGSAPARRMFSEHQYHCVCPMRSPEDPDRMMKYASKLAEKACKITNKNLHEKIKDLRTVL 125 +GSAPARR+ S+H YHC+CPM+S EDP+R+ YA KLA+ + + +KN+ KI DL+ V+ Sbjct 63 VGSAPARRLMSDHTYHCICPMKSAEDPERLANYARKLAKASGTVLDKNVSGKITDLQDVM 122 Query 126 DTPDAETPSLCFHNDVTCNMRAEYSVMQDVY-INAPGTIYHQAMKGVRTLYWIGFDTTQF 184 TPD E+P+ C H D TC RAE +V QDVY ++AP ++YHQA+KGVRT YWIGFDTT F Sbjct 123 ATPDLESPTFCLHTDETCRTRAEVAVYQDVYAVHAPTSLYHQAIKGVRTAYWIGFDTTPF 182 Query 185 MFSAMAGSYPAYNTNWADEKVLEARNIGLCSTKLSEGRTGKLSIMRKKELKPGSRVYFSV 244 MF A+AG+YPAY+TNWADE+VL+ARNIGLC+T LSEGR GKLSIMRKK L+P RV FSV Sbjct 183 MFEALAGAYPAYSTNWADEQVLQARNIGLCATGLSEGRRGKLSIMRKKCLRPSDRVMFSV 242 Query 245 GSTLYPEHRASLQSWHLPSVFHLNGKQSYTCRCDTVVSCEGYVVKKITISPGITGETVGY 304 GSTLY E R L+SWHLPSVFHL GK S+TCRCDTVVSCEGYVVKKITISPGI G+TV Y Sbjct 243 GSTLYTESRKLLRSWHLPSVFHLKGKNSFTCRCDTVVSCEGYVVKKITISPGIYGKTVDY 302 Query 305 AVTHNSEGFLLCKVTDTVKGERVSFPVCTYIPATICDQMTGIMATDISPDDAQKLLVGLN 364 AVTH++EGFL+CK+TDTV+GERVSFPVCTY+PATICDQMTGI+ATD++P+DAQKLLVGLN Sbjct 303 AVTHHAEGFLMCKITDTVRGERVSFPVCTYVPATICDQMTGILATDVTPEDAQKLLVGLN 362 Query 365 QRIVINGRTNRNTNTMQNYLLPIIAQGFSKWAKERKDDLDNEKMLGTRERKLTYGCLWAF 424 QRIV+NGRT RNTNTM+NYLLP++AQ FSKWA+E + D+++EK LGTRER LT CLWAF Sbjct 363 QRIVVNGRTQRNTNTMKNYLLPVVAQAFSKWAREARADMEDEKPLGTRERTLTCCCLWAF 422 Query 425 RTKKVHSFYRPPGTQTCVKVPASFSAFPMSSVWTTSLPMSLRQKLKLALQPKKEEKL 481 ++ K+H+ Y+ P TQT VKVP++F +F + S+W++SL M +RQ++KL L + + L Sbjct 423 KSHKIHTMYKRPETQTIVKVPSTFDSFVIPSLWSSSLSMGIRQRIKLLLSARMAQGL 479 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Sagiyama virus] Sequence ID: Q9JGL0.3 Length: 2467 Range 1: 3 to 479 Score:718 bits(1853), Expect:0.0, Method:Compositional matrix adjust., Identities:327/477(69%), Positives:400/477(83%), Gaps:1/477(0%) Query 6 VNVDVDPQSPFVVQLQKSFPQFEVVAQQVTPNDHANARAFSHLASKLIELEVPTTATILD 65 V VDV+ SPF+ LQK+FP FEV +QQVTPNDHANARAFSHLA+KLIE EVPT TILD Sbjct 3 VTVDVEADSPFLKALQKAFPAFEVESQQVTPNDHANARAFSHLATKLIEQEVPTGVTILD 62 Query 66 IGSAPARRMFSEHQYHCVCPMRSPEDPDRMMKYASKLAEKACKITNKNLHEKIKDLRTVL 125 +GSAPARR+ S+H YHC+CPM+S EDP+R+ YA KLA+ + + +KN+ KI DL+ V+ Sbjct 63 VGSAPARRLMSDHTYHCICPMKSAEDPERLANYARKLAKASGTVLDKNVSGKITDLQDVM 122 Query 126 DTPDAETPSLCFHNDVTCNMRAEYSVMQDVY-INAPGTIYHQAMKGVRTLYWIGFDTTQF 184 TPD E+P+ C H D TC RAE +V QDVY ++AP ++YHQA+KGVRT YWIGFDTT F Sbjct 123 ATPDLESPTFCLHTDETCRTRAEVAVYQDVYAVHAPTSLYHQAIKGVRTAYWIGFDTTPF 182 Query 185 MFSAMAGSYPAYNTNWADEKVLEARNIGLCSTKLSEGRTGKLSIMRKKELKPGSRVYFSV 244 MF A+AG+YPAY+TNWADE+VL+ARNIGLC+T LSEGR GKLSIMRKK L+P RV FSV Sbjct 183 MFEALAGAYPAYSTNWADEQVLQARNIGLCATGLSEGRRGKLSIMRKKCLRPSDRVMFSV 242 Query 245 GSTLYPEHRASLQSWHLPSVFHLNGKQSYTCRCDTVVSCEGYVVKKITISPGITGETVGY 304 GSTLY E R L+SWHLPSVFHL GK S+TCRCDTVVSCEGYVVKKITISPGI G+TV Y Sbjct 243 GSTLYTESRKLLRSWHLPSVFHLKGKNSFTCRCDTVVSCEGYVVKKITISPGIYGKTVDY 302 Query 305 AVTHNSEGFLLCKVTDTVKGERVSFPVCTYIPATICDQMTGIMATDISPDDAQKLLVGLN 364 AVTH++EGFL+CK+TDTV+GERVSFPVCTY+PATICDQMTGI+ATD++P+DAQKLLVGLN Sbjct 303 AVTHHAEGFLVCKITDTVRGERVSFPVCTYVPATICDQMTGILATDVTPEDAQKLLVGLN 362 Query 365 QRIVINGRTNRNTNTMQNYLLPIIAQGFSKWAKERKDDLDNEKMLGTRERKLTYGCLWAF 424 QRIV+NGRT RNTNTM+NYLLP++AQ FSKWA+E + D+++EK LGTRER LT CLWAF Sbjct 363 QRIVVNGRTQRNTNTMKNYLLPVVAQAFSKWAREARADMEDEKPLGTRERTLTCCCLWAF 422 Query 425 RTKKVHSFYRPPGTQTCVKVPASFSAFPMSSVWTTSLPMSLRQKLKLALQPKKEEKL 481 ++ K+H+ Y+ P TQT VKVP++F +F + S+W++SL M +RQ++KL L + + L Sbjct 423 KSHKIHTMYKRPETQTIVKVPSTFDSFVIPSLWSSSLSMGIRQRIKLLLSARMAQGL 479 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Ross river virus (STRAIN NB5092)] Sequence ID: P13887.2 Length: 2480 Range 1: 3 to 478 Score:712 bits(1839), Expect:0.0, Method:Compositional matrix adjust., Identities:322/476(68%), Positives:392/476(82%), Gaps:0/476(0%) Query 6 VNVDVDPQSPFVVQLQKSFPQFEVVAQQVTPNDHANARAFSHLASKLIELEVPTTATILD 65 V VDV+ SPF+ LQK+FP FEV +QQVTPNDHANARAFSHLA+KLIE EVP TILD Sbjct 3 VTVDVEADSPFLKALQKAFPAFEVESQQVTPNDHANARAFSHLATKLIEQEVPANITILD 62 Query 66 IGSAPARRMFSEHQYHCVCPMRSPEDPDRMMKYASKLAEKACKITNKNLHEKIKDLRTVL 125 +GSAPARR+ S+H YHC+CPM+S EDP+R+ YA KLA+ A ++ +KN+ KI DL+ V+ Sbjct 63 VGSAPARRLMSDHSYHCICPMKSAEDPERLANYARKLAKTAGEVLDKNVSGKITDLQDVM 122 Query 126 DTPDAETPSLCFHNDVTCNMRAEYSVMQDVYINAPGTIYHQAMKGVRTLYWIGFDTTQFM 185 TPD E+P+ C H D TC RAE +V QDV +AP ++YHQAMKGVRT+YWIGFDTT FM Sbjct 123 ATPDLESPTFCLHTDETCRTRAEVAVYQDVXXHAPTSLYHQAMKGVRTVYWIGFDTTPFM 182 Query 186 FSAMAGSYPAYNTNWADEKVLEARNIGLCSTKLSEGRTGKLSIMRKKELKPGSRVYFSVG 245 F +AG+YP Y+TNWADE+VL+ARNIGLC+T LSEG GK+SIMRKK L+P R FSVG Sbjct 183 FEVVAGAYPTYSTNWADEQVLQARNIGLCATSLSEGHRGKISIMRKKRLRPSDRXMFSVG 242 Query 246 STLYPEHRASLQSWHLPSVFHLNGKQSYTCRCDTVVSCEGYVVKKITISPGITGETVGYA 305 TLY E R L+SWHLPSVFHL GK S+TCRCDT+VSCEGYVVKKIT+SPG G+TVGYA Sbjct 243 XTLYIESRRLLKSWHLPSVFHLKGKNSFTCRCDTIVSCEGYVVKKITMSPGTYGKTVGYA 302 Query 306 VTHNSEGFLLCKVTDTVKGERVSFPVCTYIPATICDQMTGIMATDISPDDAQKLLVGLNQ 365 VTH++EGFL+CKVTDTV+GERVSFPVCTY+PATICDQMTGI+ATD++P+DAQKLLVGLNQ Sbjct 303 VTHHAEGFLMCKVTDTVRGERVSFPVCTYVPATICDQMTGILATDVTPEDAQKLLVGLNQ 362 Query 366 RIVINGRTNRNTNTMQNYLLPIIAQGFSKWAKERKDDLDNEKMLGTRERKLTYGCLWAFR 425 RIV+NGRT RNTNTM+NYLLP++AQ FSKWA+E K D+++EK LGTRER LT CLWAF+ Sbjct 363 RIVVNGRTQRNTNTMKNYLLPVVAQAFSKWAREAKADMEDEKPLGTRERTLTCCCLWAFK 422 Query 426 TKKVHSFYRPPGTQTCVKVPASFSAFPMSSVWTTSLPMSLRQKLKLALQPKKEEKL 481 K H+ Y+ P TQT VKVP++F +F + S+W++SL + +RQ++KL L PK L Sbjct 423 NHKTHTMYKRPDTQTIVKVPSTFDSFVIPSLWSSSLSIGIRQRIKLLLGPKLSRDL 478 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Semliki Forest virus] Sequence ID: P08411.2 Length: 2432 Range 1: 5 to 514 Score:703 bits(1815), Expect:0.0, Method:Compositional matrix adjust., Identities:334/512(65%), Positives:413/512(80%), Gaps:3/512(0%) Query 6 VNVDVDPQSPFVVQLQKSFPQFEVVAQQVTPNDHANARAFSHLASKLIELEVPTTATILD 65 V+VD++ SPF+ LQK+FP FEV + QVTPNDHANARAFSHLA+KLIE E ILD Sbjct 5 VHVDIEADSPFIKSLQKAFPSFEVESLQVTPNDHANARAFSHLATKLIEQETDKDTLILD 64 Query 66 IGSAPARRMFSEHQYHCVCPMRSPEDPDRMMKYASKLAEKACKITNKNLHEKIKDLRTVL 125 IGSAP+RRM S H+YHCVCPMRS EDP+R++ YA KLA + K+ ++ + KI DL+TV+ Sbjct 65 IGSAPSRRMMSTHKYHCVCPMRSAEDPERLVCYAKKLAAASGKVLDREIAGKITDLQTVM 124 Query 126 DTPDAETPSLCFHNDVTCNMRAEYSVMQDVY-INAPGTIYHQAMKGVRTLYWIGFDTTQF 184 TPDAE+P+ C H DVTC AE +V QDVY ++AP ++YHQAMKGVRT YWIGFDTT F Sbjct 125 ATPDAESPTFCLHTDVTCRTAAEVAVYQDVYAVHAPTSLYHQAMKGVRTAYWIGFDTTPF 184 Query 185 MFSAMAGSYPAYNTNWADEKVLEARNIGLCSTKLSEGRTGKLSIMRKKELKPGSRVYFSV 244 MF A+AG+YP Y TNWADE+VL+ARNIGLC+ L+EGR GKLSI+RKK+LKP V FSV Sbjct 185 MFDALAGAYPTYATNWADEQVLQARNIGLCAASLTEGRLGKLSILRKKQLKPCDTVMFSV 244 Query 245 GSTLYPEHRASLQSWHLPSVFHLNGKQSYTCRCDTVVSCEGYVVKKITISPGITGETVGY 304 GSTLY E R L+SWHLPSVFHL GKQS+TCRCDT+VSCEGYVVKKIT+ PG+ G+TVGY Sbjct 245 GSTLYTESRKLLRSWHLPSVFHLKGKQSFTCRCDTIVSCEGYVVKKITMCPGLYGKTVGY 304 Query 305 AVTHNSEGFLLCKVTDTVKGERVSFPVCTYIPATICDQMTGIMATDISPDDAQKLLVGLN 364 AVT+++EGFL+CK TDTVKGERVSFPVCTY+P+TICDQMTGI+ATD++P+DAQKLLVGLN Sbjct 305 AVTYHAEGFLVCKTTDTVKGERVSFPVCTYVPSTICDQMTGILATDVTPEDAQKLLVGLN 364 Query 365 QRIVINGRTNRNTNTMQNYLLPIIAQGFSKWAKERKDDLDNEKMLGTRERKLTYGCLWAF 424 QRIV+NGRT RNTNTM+NYLLPI+A FSKWA+E K DLD+EK LG RER LT CLWAF Sbjct 365 QRIVVNGRTQRNTNTMKNYLLPIVAVAFSKWAREYKADLDDEKPLGVRERSLTCCCLWAF 424 Query 425 RTKKVHSFYRPPGTQTCVKVPASFSAFPMSSVWTTSLPMSLRQKLKLALQPKKEEKLLQV 484 +T+K+H+ Y+ P TQT VKVP+ F++F + S+W+T L + +R ++K+ L K + +L+ V Sbjct 425 KTRKMHTMYKKPDTQTIVKVPSEFNSFVIPSLWSTGLAIPVRSRIKMLLAKKTKRELIPV 484 Query 485 SEELVMEAKAAFEDaqeearaeklrealPPLV 516 + A+ A ++ +E AE REALPPLV Sbjct 485 LD--ASSARDAEQEEKERLEAELTREALPPLV 514 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Chikungunya virus strain Senegal 37997] Sequence ID: Q5XXP4.1 Length: 2474 Range 1: 4 to 484 Score:687 bits(1774), Expect:0.0, Method:Compositional matrix adjust., Identities:313/481(65%), Positives:391/481(81%), Gaps:1/481(0%) Query 6 VNVDVDPQSPFVVQLQKSFPQFEVVAQQVTPNDHANARAFSHLASKLIELEVPTTATILD 65 V VD+D S F+ LQ+++P FEV +QVTPNDHANARAFSHLA KLIE E+ +TILD Sbjct 4 VYVDIDADSAFLKALQRAYPMFEVEPRQVTPNDHANARAFSHLAIKLIEQEIDPDSTILD 63 Query 66 IGSAPARRMFSEHQYHCVCPMRSPEDPDRMMKYASKLAEKACKITNKNLHEKIKDLRTVL 125 IGSAPARRM S+ +YHCVCPMRS EDP+R+ YA KLA A K+ ++N+ EKI DL+ V+ Sbjct 64 IGSAPARRMMSDRKYHCVCPMRSAEDPERLANYARKLASAAGKVLDRNISEKIGDLQAVM 123 Query 126 DTPDAETPSLCFHNDVTCNMRAEYSVMQDVY-INAPGTIYHQAMKGVRTLYWIGFDTTQF 184 PDAETP+ C H DV+C RA+ ++ QDVY ++AP ++YHQA+KGVR YWIGFDTT F Sbjct 124 AVPDAETPTFCLHTDVSCRQRADVAIYQDVYAVHAPTSLYHQAIKGVRVAYWIGFDTTPF 183 Query 185 MFSAMAGSYPAYNTNWADEKVLEARNIGLCSTKLSEGRTGKLSIMRKKELKPGSRVYFSV 244 M++AMAG+YP+Y+TNWADE+VL+A+NIGLCST L+EGR GKLSIMR K++KP RV FSV Sbjct 184 MYNAMAGAYPSYSTNWADEQVLKAKNIGLCSTDLTEGRRGKLSIMRGKKMKPCDRVLFSV 243 Query 245 GSTLYPEHRASLQSWHLPSVFHLNGKQSYTCRCDTVVSCEGYVVKKITISPGITGETVGY 304 GSTLYPE R L+SWHLPSVFHL GK S+TCRCDTVVSCEGYVVK+ITISPG+ G+T GY Sbjct 244 GSTLYPESRKLLKSWHLPSVFHLKGKLSFTCRCDTVVSCEGYVVKRITISPGLYGKTTGY 303 Query 305 AVTHNSEGFLLCKVTDTVKGERVSFPVCTYIPATICDQMTGIMATDISPDDAQKLLVGLN 364 AVTH+++GFL+CK TDTV GERVSF VCTY+PATICDQMTGI+AT+++P+DAQKLLVGLN Sbjct 304 AVTHHADGFLMCKTTDTVDGERVSFSVCTYVPATICDQMTGILATEVTPEDAQKLLVGLN 363 Query 365 QRIVINGRTNRNTNTMQNYLLPIIAQGFSKWAKERKDDLDNEKMLGTRERKLTYGCLWAF 424 QRIV+NGRT RNTNTM+NYLLP++AQ FSKWAKE + D+++EK+LG RER LT CLWAF Sbjct 364 QRIVVNGRTQRNTNTMKNYLLPVVAQAFSKWAKECRKDMEDEKLLGIRERTLTCCCLWAF 423 Query 425 RTKKVHSFYRPPGTQTCVKVPASFSAFPMSSVWTTSLPMSLRQKLKLALQPKKEEKLLQV 484 + +K H+ Y+ P TQ+ KVPA F +F + S+W++ L + LR ++K L + L+ Sbjct 424 KKQKTHTVYKRPDTQSIQKVPAEFDSFVVPSLWSSGLSIPLRTRIKWLLSKVPKTDLIPY 483 Query 485 S 485 S Sbjct 484 S 484 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Mayaro virus (strain Brazil)] Sequence ID: Q8QZ73.3 Length: 2437 Range 1: 4 to 481 Score:685 bits(1768), Expect:0.0, Method:Compositional matrix adjust., Identities:309/478(65%), Positives:389/478(81%), Gaps:1/478(0%) Query 6 VNVDVDPQSPFVVQLQKSFPQFEVVAQQVTPNDHANARAFSHLASKLIELEVPTTATILD 65 V VD++ +SPF+ LQ++FP FEV AQQVTPNDHANARAFSHLA+KLIE E ILD Sbjct 4 VFVDIEAESPFLKSLQRAFPAFEVEAQQVTPNDHANARAFSHLATKLIEQETEKDTLILD 63 Query 66 IGSAPARRMFSEHQYHCVCPMRSPEDPDRMMKYASKLAEKACKITNKNLHEKIKDLRTVL 125 IGSAPARRM SEH YHCVCPMRS EDP+R++ YA KLA+ + ++ ++N+ KI DL++V+ Sbjct 64 IGSAPARRMMSEHTYHCVCPMRSAEDPERLLYYARKLAKASGEVVDRNIAAKIDDLQSVM 123 Query 126 DTPDAETPSLCFHNDVTCNMRAEYSVMQDVY-INAPGTIYHQAMKGVRTLYWIGFDTTQF 184 TPD E+ + C H D TC +AE +V QDVY ++AP ++Y QAMKGVRT YWIGFDTT F Sbjct 124 ATPDNESRTFCLHTDQTCRTQAEVAVYQDVYAVHAPTSLYFQAMKGVRTAYWIGFDTTPF 183 Query 185 MFSAMAGSYPAYNTNWADEKVLEARNIGLCSTKLSEGRTGKLSIMRKKELKPGSRVYFSV 244 MF MAG+YP Y TNWADE+VL+ARNIGLCS L+EG GKLSIMRKK++ P ++ FSV Sbjct 184 MFDTMAGAYPTYATNWADEQVLKARNIGLCSASLTEGHLGKLSIMRKKKMTPSDQIMFSV 243 Query 245 GSTLYPEHRASLQSWHLPSVFHLNGKQSYTCRCDTVVSCEGYVVKKITISPGITGETVGY 304 GSTLY E R L+SWHLPSVFHL G+QSYTCRCDT+VSCEGYVVKKIT+SPG+ G+T GY Sbjct 244 GSTLYIESRRLLKSWHLPSVFHLKGRQSYTCRCDTIVSCEGYVVKKITMSPGVFGKTSGY 303 Query 305 AVTHNSEGFLLCKVTDTVKGERVSFPVCTYIPATICDQMTGIMATDISPDDAQKLLVGLN 364 AVTH++EGFL+CK TDT+ GERVSFP+CTY+P+TICDQMTGI+AT+++P+DAQKLLVGLN Sbjct 304 AVTHHAEGFLVCKTTDTIAGERVSFPICTYVPSTICDQMTGILATEVTPEDAQKLLVGLN 363 Query 365 QRIVINGRTNRNTNTMQNYLLPIIAQGFSKWAKERKDDLDNEKMLGTRERKLTYGCLWAF 424 QRIV+NGRT RNTNTM+NYLLP+++Q FSKWAKE + D ++EK +G RER LT CLWAF Sbjct 364 QRIVVNGRTQRNTNTMKNYLLPVVSQAFSKWAKEYRLDQEDEKNMGMRERTLTCCCLWAF 423 Query 425 RTKKVHSFYRPPGTQTCVKVPASFSAFPMSSVWTTSLPMSLRQKLKLALQPKKEEKLL 482 +T K H+ Y+ P TQT VKVP+ F++F + S+W+ L + +R +++L LQ ++ E L+ Sbjct 424 KTHKNHTMYKKPDTQTIVKVPSEFNSFVIPSLWSAGLSIGIRHRIRLLLQSRRVEPLV 481 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [O'nyong-nyong virus strain SG650] Sequence ID: O90368.1 Length: 2513 Range 1: 4 to 515 Score:684 bits(1764), Expect:0.0, Method:Compositional matrix adjust., Identities:330/515(64%), Positives:405/515(78%), Gaps:6/515(1%) Query 6 VNVDVDPQSPFVVQLQKSFPQFEVVAQQVTPNDHANARAFSHLASKLIELEVPTTATILD 65 V VD+D S F+ LQ+++P FEV +QVTPNDHANARAFSHLA KLIE E+ +TILD Sbjct 4 VYVDIDADSAFLKALQRAYPMFEVEPKQVTPNDHANARAFSHLAIKLIEQEIDPDSTILD 63 Query 66 IGSAPARRMFSEHQYHCVCPMRSPEDPDRMMKYASKLAEKACKITNKNLHEKIKDLRTVL 125 IG APARRM S+ +YHCVCPMRS EDP+R+ YA KLA A K+T+KN+ KI DL+ V+ Sbjct 64 IGPAPARRMMSDRKYHCVCPMRSAEDPERLANYARKLASAAGKVTDKNISGKINDLQAVM 123 Query 126 DTPDAETPSLCFHNDVTCNMRAEYSVMQDVY-INAPGTIYHQAMKGVRTLYWIGFDTTQF 184 P+ ET + C H D TC R + ++ QDVY ++AP ++YHQA+KGVR YWIGFDTT F Sbjct 124 AVPNMETSTFCLHTDATCKQRGDVAIYQDVYAVHAPTSLYHQAIKGVRVAYWIGFDTTPF 183 Query 185 MFSAMAGSYPAYNTNWADEKVLEARNIGLCSTKLSEGRTGKLSIMRKKELKPGSRVYFSV 244 M++AMAG+YP+Y+TNWADE+VL+A+NIGLCST LSEGR GKLSIMR K+LKP RV FSV Sbjct 184 MYNAMAGAYPSYSTNWADEQVLKAKNIGLCSTDLSEGRRGKLSIMRGKKLKPCDRVLFSV 243 Query 245 GSTLYPEHRASLQSWHLPSVFHLNGKQSYTCRCDTVVSCEGYVVKKITISPGITGETVGY 304 GSTLYPE R LQSWHLPSVFHL GK S+TCRCDT+VSCEGYVVK++T+SPGI G+T GY Sbjct 244 GSTLYPESRKLLQSWHLPSVFHLKGKLSFTCRCDTIVSCEGYVVKRVTMSPGIYGKTSGY 303 Query 305 AVTHNSEGFLLCKVTDTVKGERVSFPVCTYIPATICDQMTGIMATDISPDDAQKLLVGLN 364 AVTH+++GFL+CK TDTV GERVSF VCTY+PATICDQMTGI+AT+++P+DAQKLLVGLN Sbjct 304 AVTHHADGFLMCKTTDTVDGERVSFSVCTYVPATICDQMTGILATEVTPEDAQKLLVGLN 363 Query 365 QRIVINGRTNRNTNTMQNYLLPIIAQGFSKWAKERKDDLDNEKMLGTRERKLTYGCLWAF 424 QRIV+NGRT RNTNTM+NYLLPI+AQ FSKWAKE + D+++EK+LG RER LT CLWAF Sbjct 364 QRIVVNGRTQRNTNTMKNYLLPIVAQAFSKWAKECRKDMEDEKLLGVRERTLTCCCLWAF 423 Query 425 RTKKVHSFYRPPGTQTCVKVPASFSAFPMSSVWTTSLPMSLRQKLK--LALQPKKEEKLL 482 R K H+ Y+ P TQ+ KVPA F +F + S+W++ L + LR ++K L+ PK E+ Sbjct 424 RKHKTHTVYKRPDTQSIQKVPAEFDSFVIPSLWSSGLSIPLRTRIKWLLSKAPKHEQLPH 483 Query 483 QVSEELVMEAKAAFEDaqeearaeklrealPPLVA 517 + E EA A DA EE AE REA+PPL A Sbjct 484 SGNAE---EAAQAEMDAAEEREAELTREAMPPLQA 515 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [O'nyong-nyong virus strain Gulu] Sequence ID: P13886.2 Length: 2514 Range 1: 4 to 515 Score:684 bits(1764), Expect:0.0, Method:Compositional matrix adjust., Identities:331/515(64%), Positives:405/515(78%), Gaps:6/515(1%) Query 6 VNVDVDPQSPFVVQLQKSFPQFEVVAQQVTPNDHANARAFSHLASKLIELEVPTTATILD 65 V VD+D S F+ LQ+++P FEV +QVTPNDHANARAFSHLA KLIE E+ +TILD Sbjct 4 VYVDIDADSAFLKALQQAYPMFEVEPKQVTPNDHANARAFSHLAIKLIEQEIDPDSTILD 63 Query 66 IGSAPARRMFSEHQYHCVCPMRSPEDPDRMMKYASKLAEKACKITNKNLHEKIKDLRTVL 125 IGSAPARRM S+ +YHCVCPMRS EDP+R+ YA KLA A K+T+KN+ KI DL+ V+ Sbjct 64 IGSAPARRMMSDRKYHCVCPMRSAEDPERLANYARKLASAAGKVTDKNISGKINDLQAVM 123 Query 126 DTPDAETPSLCFHNDVTCNMRAEYSVMQDVY-INAPGTIYHQAMKGVRTLYWIGFDTTQF 184 P+ ET + C H D TC R + ++ QDVY ++AP ++YHQA+KGVR YWIGFDTT F Sbjct 124 AVPNMETSTFCLHTDATCKQRGDVAIYQDVYAVHAPTSLYHQAIKGVRVAYWIGFDTTPF 183 Query 185 MFSAMAGSYPAYNTNWADEKVLEARNIGLCSTKLSEGRTGKLSIMRKKELKPGSRVYFSV 244 M++AMAG+YP+Y+TNWADE+VL+A+NIGLCST LSEGR GKLSIMR K+LKP RV FSV Sbjct 184 MYNAMAGAYPSYSTNWADEQVLKAKNIGLCSTDLSEGRRGKLSIMRGKKLKPCDRVLFSV 243 Query 245 GSTLYPEHRASLQSWHLPSVFHLNGKQSYTCRCDTVVSCEGYVVKKITISPGITGETVGY 304 GSTLYPE R LQSWHLPSVFHL GK S+TCRCDT+VSCEGYVVK++T+SPGI G+T GY Sbjct 244 GSTLYPESRKLLQSWHLPSVFHLKGKLSFTCRCDTIVSCEGYVVKRVTMSPGIYGKTSGY 303 Query 305 AVTHNSEGFLLCKVTDTVKGERVSFPVCTYIPATICDQMTGIMATDISPDDAQKLLVGLN 364 AVTH++ GFL+CK TDTV GERVSF VCTY+PATICDQMTGI+AT+++P+DAQKLLVGLN Sbjct 304 AVTHHAGGFLMCKTTDTVDGERVSFSVCTYVPATICDQMTGILATEVTPEDAQKLLVGLN 363 Query 365 QRIVINGRTNRNTNTMQNYLLPIIAQGFSKWAKERKDDLDNEKMLGTRERKLTYGCLWAF 424 QRIV+NGRT RNTNTM+NYLLPI+AQ FSKWAKE + D+++EK+LG RER LT CLWAF Sbjct 364 QRIVVNGRTQRNTNTMKNYLLPIVAQAFSKWAKECRKDMEDEKLLGVRERTLTCCCLWAF 423 Query 425 RTKKVHSFYRPPGTQTCVKVPASFSAFPMSSVWTTSLPMSLRQKLK--LALQPKKEEKLL 482 R K H+ Y+ P TQ+ KVPA F +F + S+W++ L + LR ++K L+ PK E+ Sbjct 424 RKHKTHTVYKRPDTQSIQKVPAEFDSFVIPSLWSSGLSIPLRTRIKWLLSKAPKYEQLPH 483 Query 483 QVSEELVMEAKAAFEDaqeearaeklrealPPLVA 517 + E EA A DA EE AE REA+PPL A Sbjct 484 SGNAE---EAAQAETDAVEEQEAELTREAMPPLQA 515 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Igbo Ora virus] Sequence ID: O90370.1 Length: 2513 Range 1: 4 to 515 Score:679 bits(1753), Expect:0.0, Method:Compositional matrix adjust., Identities:328/515(64%), Positives:403/515(78%), Gaps:6/515(1%) Query 6 VNVDVDPQSPFVVQLQKSFPQFEVVAQQVTPNDHANARAFSHLASKLIELEVPTTATILD 65 V VD+D S F+ LQ+++P FEV +QVTPNDHANARAFSHLA KLIE E+ +TIL Sbjct 4 VYVDIDADSAFLKALQRAYPMFEVEPKQVTPNDHANARAFSHLAIKLIEQEIDPGSTILG 63 Query 66 IGSAPARRMFSEHQYHCVCPMRSPEDPDRMMKYASKLAEKACKITNKNLHEKIKDLRTVL 125 IGSAPARRM S+ +YHCVCPMRS EDP+R+ YA KLA A K+T+KN+ KI DL+ V+ Sbjct 64 IGSAPARRMMSDRKYHCVCPMRSAEDPERLANYARKLASAAGKVTDKNISGKINDLQAVM 123 Query 126 DTPDAETPSLCFHNDVTCNMRAEYSVMQDVY-INAPGTIYHQAMKGVRTLYWIGFDTTQF 184 P+ ET + C H D TC R + ++ QDVY ++AP ++YHQA+KGV YWIGFDTT F Sbjct 124 AVPNMETSTFCLHTDATCKQRGDVAIYQDVYAVHAPTSLYHQAIKGVHVAYWIGFDTTPF 183 Query 185 MFSAMAGSYPAYNTNWADEKVLEARNIGLCSTKLSEGRTGKLSIMRKKELKPGSRVYFSV 244 M++AMAG+YP+Y+TNWADE+VL+A+NIGLCST LSEGR GKLSIMR K+ KP RV FSV Sbjct 184 MYNAMAGAYPSYSTNWADEQVLKAKNIGLCSTDLSEGRRGKLSIMRGKKFKPCDRVLFSV 243 Query 245 GSTLYPEHRASLQSWHLPSVFHLNGKQSYTCRCDTVVSCEGYVVKKITISPGITGETVGY 304 GSTLYPE R LQSWHLPSVFHL GK S+TCRCDT+VSCEGYVVK++T+SPGI G+T GY Sbjct 244 GSTLYPESRKLLQSWHLPSVFHLKGKLSFTCRCDTIVSCEGYVVKRVTMSPGIYGKTSGY 303 Query 305 AVTHNSEGFLLCKVTDTVKGERVSFPVCTYIPATICDQMTGIMATDISPDDAQKLLVGLN 364 AVTH+++GFL+CK TDTV GERVSF VCTY+PATICDQMTGI+AT+++P+DAQKLLVGLN Sbjct 304 AVTHHADGFLMCKTTDTVDGERVSFSVCTYVPATICDQMTGILATEVTPEDAQKLLVGLN 363 Query 365 QRIVINGRTNRNTNTMQNYLLPIIAQGFSKWAKERKDDLDNEKMLGTRERKLTYGCLWAF 424 QRIV+NGRT RNTNTM+NYLLPI+AQ FSKWAKE + D+++EK+LG RER LT CLWAF Sbjct 364 QRIVVNGRTQRNTNTMKNYLLPIVAQAFSKWAKECRKDMEDEKLLGVRERTLTCCCLWAF 423 Query 425 RTKKVHSFYRPPGTQTCVKVPASFSAFPMSSVWTTSLPMSLRQKLK--LALQPKKEEKLL 482 R K H+ Y+ P TQ+ KVPA F +F + S+W++ L + LR ++K L+ PK E+ Sbjct 424 RKHKTHTVYKRPDTQSIQKVPAEFDSFVIPSLWSSGLSIPLRTRIKWLLSKAPKHEQLPH 483 Query 483 QVSEELVMEAKAAFEDaqeearaeklrealPPLVA 517 + E EA A DA EE AE REA+PPL A Sbjct 484 SGNAE---EAAQAETDAVEEREAELTREAMPPLQA 515 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Barmah Forest virus] Sequence ID: P87515.3 Length: 2411 Range 1: 1 to 491 Score:676 bits(1743), Expect:0.0, Method:Compositional matrix adjust., Identities:311/495(63%), Positives:388/495(78%), Gaps:5/495(1%) Query 1 MEKPVVNVDVDPQSPFVVQLQKSFPQFEVVAQQVTPNDHANARAFSHLASKLIELEVPTT 60 M KPVV +DV+P+S F Q+Q FPQFE+ A Q TPNDHA+ARAFSHLA+KLIE+E Sbjct 1 MAKPVVKIDVEPESHFAKQVQSCFPQFEIEAVQTTPNDHAHARAFSHLATKLIEMETAKD 60 Query 61 ATILDIGSAPARRMFSEHQYHCVCPMRSPEDPDRMMKYASKLAEKACKITNKNLHEKIKD 120 ILDIGSAPARR++SEH+YHCVCPM+ EDP+RM+ YA KL + K EK++D Sbjct 61 QIILDIGSAPARRLYSEHKYHCVCPMKCTEDPERMLGYARKLIAGSAK----GKAEKLRD 116 Query 121 LRTVLDTPDAETPSLCFHNDVTCNMRAEYSVMQDVY-INAPGTIYHQAMKGVRTLYWIGF 179 LR VL TPD ET SLC H D +C R + +V QDVY I+AP T+YHQA+KGVRT YWIGF Sbjct 117 LRDVLATPDIETQSLCLHTDASCRYRGDVAVYQDVYAIDAPTTLYHQALKGVRTAYWIGF 176 Query 180 DTTQFMFSAMAGSYPAYNTNWADEKVLEARNIGLCSTKLSEGRTGKLSIMRKKELKPGSR 239 DTT FM+ A+AG+YP Y+TNWADE+VLE+RNIGLCS K+SEG SI+RKK LK R Sbjct 177 DTTPFMYDALAGAYPLYSTNWADEQVLESRNIGLCSDKVSEGGKKGRSILRKKFLKQSDR 236 Query 240 VYFSVGSTLYPEHRASLQSWHLPSVFHLNGKQSYTCRCDTVVSCEGYVVKKITISPGITG 299 V FSVGSTLY E R LQSWHLPS FHL GK S+TCRCDT+VSCEGYV+KKIT+ PG+TG Sbjct 237 VMFSVGSTLYTESRKLLQSWHLPSTFHLKGKSSFTCRCDTIVSCEGYVLKKITMCPGVTG 296 Query 300 ETVGYAVTHNSEGFLLCKVTDTVKGERVSFPVCTYIPATICDQMTGIMATDISPDDAQKL 359 + +GYAVTH+ EGF++ KVTDT++GERVSF VCTY+P T+CDQMTGI+AT+++ DDAQKL Sbjct 297 KPIGYAVTHHKEGFVVGKVTDTIRGERVSFAVCTYVPTTLCDQMTGILATEVTADDAQKL 356 Query 360 LVGLNQRIVINGRTNRNTNTMQNYLLPIIAQGFSKWAKERKDDLDNEKMLGTRERKLTYG 419 LVGLNQRIV+NGRT RNTNTM+NYLLP++AQ +KWAKE K D+++E+ L R+R LT Sbjct 357 LVGLNQRIVVNGRTQRNTNTMKNYLLPLVAQALAKWAKEAKQDMEDERPLNERQRTLTCL 416 Query 420 CLWAFRTKKVHSFYRPPGTQTCVKVPASFSAFPMSSVWTTSLPMSLRQKLKLALQPKKEE 479 C WAF+ K H+ Y+ P TQ+ VKVP F++FP+ S+W+ + +SLRQKLK+ LQ ++ Sbjct 417 CCWAFKRNKRHAIYKRPDTQSIVKVPCEFTSFPLVSLWSAGMSISLRQKLKMMLQARQPT 476 Query 480 KLLQVSEELVMEAKA 494 ++ V+EEL+ EA A Sbjct 477 QIAAVTEELIQEAAA 491 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Chikungunya virus strain S27-African prototype] Sequence ID: Q8JUX6.1 Length: 2474 Range 1: 4 to 472 Score:675 bits(1741), Expect:0.0, Method:Compositional matrix adjust., Identities:304/469(65%), Positives:384/469(81%), Gaps:1/469(0%) Query 6 VNVDVDPQSPFVVQLQKSFPQFEVVAQQVTPNDHANARAFSHLASKLIELEVPTTATILD 65 V VD+D S F+ LQ+++P FEV +QVTPNDHANARAFSHLA KLIE E+ +TILD Sbjct 4 VYVDIDADSAFLKALQRAYPMFEVEPRQVTPNDHANARAFSHLAIKLIEQEIDPDSTILD 63 Query 66 IGSAPARRMFSEHQYHCVCPMRSPEDPDRMMKYASKLAEKACKITNKNLHEKIKDLRTVL 125 IGSAPARRM S+ +YHCVCPMRS EDP+R+ YA KLA A K+ ++N+ KI DL+ V+ Sbjct 64 IGSAPARRMMSDRKYHCVCPMRSAEDPERLANYARKLASAAGKVLDRNISGKIGDLQAVM 123 Query 126 DTPDAETPSLCFHNDVTCNMRAEYSVMQDVY-INAPGTIYHQAMKGVRTLYWIGFDTTQF 184 PD ETP+ C H DV+C RA+ ++ QDVY ++AP ++YHQA+KGVR YW+GFDTT F Sbjct 124 AVPDTETPTFCLHTDVSCRQRADVAIYQDVYAVHAPTSLYHQAIKGVRLAYWVGFDTTPF 183 Query 185 MFSAMAGSYPAYNTNWADEKVLEARNIGLCSTKLSEGRTGKLSIMRKKELKPGSRVYFSV 244 M++AMAG+YP+Y+TNWADE+VL+A+NIGLCST L+EGR GKLSIMR K+L+P RV FSV Sbjct 184 MYNAMAGAYPSYSTNWADEQVLKAKNIGLCSTDLTEGRRGKLSIMRGKKLEPCDRVLFSV 243 Query 245 GSTLYPEHRASLQSWHLPSVFHLNGKQSYTCRCDTVVSCEGYVVKKITISPGITGETVGY 304 GSTLYPE R L+SWHLPSVFHL GK S+TCRCDTVVSCEGYVVK+IT+SPG+ G+T GY Sbjct 244 GSTLYPESRKLLKSWHLPSVFHLKGKLSFTCRCDTVVSCEGYVVKRITMSPGLYGKTTGY 303 Query 305 AVTHNSEGFLLCKVTDTVKGERVSFPVCTYIPATICDQMTGIMATDISPDDAQKLLVGLN 364 AVTH+++GFL+CK TDTV GERVSF VCTY+PATICDQMTGI+AT+++P+DAQKLLVGLN Sbjct 304 AVTHHADGFLMCKTTDTVDGERVSFSVCTYVPATICDQMTGILATEVTPEDAQKLLVGLN 363 Query 365 QRIVINGRTNRNTNTMQNYLLPIIAQGFSKWAKERKDDLDNEKMLGTRERKLTYGCLWAF 424 QRIV+NGRT RNTNTM+NY++P++AQ FSKWAKE + D+++EK+LG RER LT CLWAF Sbjct 364 QRIVVNGRTQRNTNTMKNYMIPVVAQAFSKWAKECRKDMEDEKLLGVRERTLTCCCLWAF 423 Query 425 RTKKVHSFYRPPGTQTCVKVPASFSAFPMSSVWTTSLPMSLRQKLKLAL 473 + +K H+ Y+ P TQ+ KV A F +F + S+W++ L + LR ++K L Sbjct 424 KKQKTHTVYKRPDTQSIQKVQAEFDSFVVPSLWSSGLSIPLRTRIKWLL 472 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Venezuelan equine encephalitis virus (strain Trinidad donkey)] Sequence ID: P27282.3 Length: 2493 Range 1: 1 to 516 Score:656 bits(1693), Expect:0.0, Method:Compositional matrix adjust., Identities:316/519(61%), Positives:402/519(77%), Gaps:4/519(0%) Query 1 MEKPVVNVDVDPQSPFVVQLQKSFPQFEVVAQQVTPNDHANARAFSHLASKLIELEVPTT 60 MEK V+VD++ SPF+ LQ+SFPQFEV A+QVT NDHANARAFSHLASKLIE EV + Sbjct 1 MEK--VHVDIEEDSPFLRALQRSFPQFEVEAKQVTDNDHANARAFSHLASKLIETEVDPS 58 Query 61 ATILDIGSAPARRMFSEHQYHCVCPMRSPEDPDRMMKYASKLAEKACKITNKNLHEKIKD 120 TILDIGSAPARRM+S+H+YHC+CPMR EDPDR+ KYA+KL + +IT+K L +K+K+ Sbjct 59 DTILDIGSAPARRMYSKHKYHCICPMRCAEDPDRLYKYATKLKKNCKEITDKELDKKMKE 118 Query 121 LRTVLDTPDAETPSLCFHNDVTCNMRAEYSVMQDVY-INAPGTIYHQAMKGVRTLYWIGF 179 L V+ PD ET ++C H+D +C + +V QDVY ++ P ++YHQA KGVR YWIGF Sbjct 119 LAAVMSDPDLETETMCLHDDESCRYEGQVAVYQDVYAVDGPTSLYHQANKGVRVAYWIGF 178 Query 180 DTTQFMFSAMAGSYPAYNTNWADEKVLEARNIGLCSTKLSEGRTGKLSIMRKKELKPGSR 239 DTT FMF +AG+YP+Y+TNWADE VL ARNIGLCS+ + E +SI+RKK LKP + Sbjct 179 DTTPFMFKNLAGAYPSYSTNWADETVLTARNIGLCSSDVMERSRRGMSILRKKYLKPSNN 238 Query 240 VYFSVGSTLYPEHRASLQSWHLPSVFHLNGKQSYTCRCDTVVSCEGYVVKKITISPGITG 299 V FSVGST+Y E R L+SWHLPSVFHL GKQ+YTCRC+T+VSC+GYVVK+I ISPG+ G Sbjct 239 VLFSVGSTIYHEKRDLLRSWHLPSVFHLRGKQNYTCRCETIVSCDGYVVKRIAISPGLYG 298 Query 300 ETVGYAVTHNSEGFLLCKVTDTVKGERVSFPVCTYIPATICDQMTGIMATDISPDDAQKL 359 + GYA T + EGFL CKVTDT+ GERVSFPVCTY+PAT+CDQMTGI+ATD+S DDAQKL Sbjct 299 KPSGYAATMHREGFLCCKVTDTLNGERVSFPVCTYVPATLCDQMTGILATDVSADDAQKL 358 Query 360 LVGLNQRIVINGRTNRNTNTMQNYLLPIIAQGFSKWAKERKDDLDNEKMLGTRERKLTYG 419 LVGLNQRIV+NGRT RNTNTM+NYLLP++AQ F++WAKE K+D ++E+ LG R+R+L G Sbjct 359 LVGLNQRIVVNGRTQRNTNTMKNYLLPVVAQAFARWAKEYKEDQEDERPLGLRDRQLVMG 418 Query 420 CLWAFRTKKVHSFYRPPGTQTCVKVPASFSAFPMSSVWTTSLPMSLRQKLKLALQPKKEE 479 C WAFR K+ S Y+ P TQT +KV + F +F + + + +L + LR +++ L+ KE Sbjct 419 CCWAFRRHKITSIYKRPDTQTIIKVNSDFHSFVLPRIGSNTLEIGLRTRIRKMLEEHKEP 478 Query 480 KLLQVSEELVMEAKAAFEDaqeearaeklrealPPLVAD 518 L +E+ V EAK A ++A+E AE+LR ALPPL AD Sbjct 479 SPLITAED-VQEAKCAADEAKEVREAEELRAALPPLAAD 516 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Venezuelan equine encephalitis virus (strain P676)] Sequence ID: P36328.2 Length: 2493 Range 1: 1 to 516 Score:656 bits(1692), Expect:0.0, Method:Compositional matrix adjust., Identities:315/519(61%), Positives:402/519(77%), Gaps:4/519(0%) Query 1 MEKPVVNVDVDPQSPFVVQLQKSFPQFEVVAQQVTPNDHANARAFSHLASKLIELEVPTT 60 MEK V+VD++ SPF+ LQ+SFPQFEV A+QVT NDHANARAFSHLASKLIE EV + Sbjct 1 MEK--VHVDIEEDSPFLRALQRSFPQFEVEAKQVTDNDHANARAFSHLASKLIETEVDPS 58 Query 61 ATILDIGSAPARRMFSEHQYHCVCPMRSPEDPDRMMKYASKLAEKACKITNKNLHEKIKD 120 TILDIGSAPARRM+S+H+YHC+CPMR EDPDR+ KYA+KL + +IT+K L +K+K+ Sbjct 59 DTILDIGSAPARRMYSKHKYHCICPMRCAEDPDRLYKYATKLKKNCKEITDKELDKKMKE 118 Query 121 LRTVLDTPDAETPSLCFHNDVTCNMRAEYSVMQDVY-INAPGTIYHQAMKGVRTLYWIGF 179 L V+ PD ET ++C H+D +C + +V QDVY ++ P ++YHQA KGVR YWIGF Sbjct 119 LAAVMSDPDLETETMCLHDDESCRYEGQVAVYQDVYAVDGPTSLYHQANKGVRVAYWIGF 178 Query 180 DTTQFMFSAMAGSYPAYNTNWADEKVLEARNIGLCSTKLSEGRTGKLSIMRKKELKPGSR 239 DTT FMF +AG+YP+Y+TNWADE VL ARNIGLCS+ + E +SI+RKK LKP + Sbjct 179 DTTPFMFKNLAGAYPSYSTNWADETVLTARNIGLCSSDVMERSRRGMSILRKKYLKPSNN 238 Query 240 VYFSVGSTLYPEHRASLQSWHLPSVFHLNGKQSYTCRCDTVVSCEGYVVKKITISPGITG 299 V FSVGST+Y E R L+SWHLPSVFHL GKQ+YTCRC+T+VSC+GYVVK+I ISPG+ G Sbjct 239 VLFSVGSTIYHEKRDLLRSWHLPSVFHLRGKQNYTCRCETIVSCDGYVVKRIAISPGLYG 298 Query 300 ETVGYAVTHNSEGFLLCKVTDTVKGERVSFPVCTYIPATICDQMTGIMATDISPDDAQKL 359 + GYA T + EGFL CKVTDT+ GERVSFPVCTY+PAT+CDQMTGI+ATD+S DDAQKL Sbjct 299 KPSGYAATMHREGFLCCKVTDTLNGERVSFPVCTYVPATLCDQMTGILATDVSADDAQKL 358 Query 360 LVGLNQRIVINGRTNRNTNTMQNYLLPIIAQGFSKWAKERKDDLDNEKMLGTRERKLTYG 419 LVGLNQRIV+NGRT RNTNTM+NYLLP++AQ F++WAKE K+D ++E+ LG R+R+L G Sbjct 359 LVGLNQRIVVNGRTQRNTNTMKNYLLPVVAQAFARWAKEYKEDQEDERPLGLRDRQLVMG 418 Query 420 CLWAFRTKKVHSFYRPPGTQTCVKVPASFSAFPMSSVWTTSLPMSLRQKLKLALQPKKEE 479 C WAFR K+ S Y+ P TQT +KV + F +F + + + +L + LR +++ L+ KE Sbjct 419 CCWAFRRHKITSIYKRPDTQTIIKVNSDFHSFVLPRIGSNTLEIGLRTRIRKMLEEHKEP 478 Query 480 KLLQVSEELVMEAKAAFEDaqeearaeklrealPPLVAD 518 L +E+ + EAK A ++A+E AE+LR ALPPL AD Sbjct 479 SPLITAED-IQEAKCAADEAKEVREAEELRAALPPLAAD 516 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Venezuelan equine encephalitis virus (strain 3880)] Sequence ID: P36327.3 Length: 2485 Range 1: 1 to 516 Score:656 bits(1692), Expect:0.0, Method:Compositional matrix adjust., Identities:314/519(61%), Positives:401/519(77%), Gaps:4/519(0%) Query 1 MEKPVVNVDVDPQSPFVVQLQKSFPQFEVVAQQVTPNDHANARAFSHLASKLIELEVPTT 60 MEK V+VD++ SPF+ LQ+SFPQFEV A+QVT NDHANARAFSHLASKLIE EV + Sbjct 1 MEK--VHVDIEEDSPFLRALQRSFPQFEVEAKQVTDNDHANARAFSHLASKLIETEVDPS 58 Query 61 ATILDIGSAPARRMFSEHQYHCVCPMRSPEDPDRMMKYASKLAEKACKITNKNLHEKIKD 120 TILDIGSAPARRM+S+H+YHC+CPMR EDPDR+ KYA+KL + +IT+K L +K+K+ Sbjct 59 DTILDIGSAPARRMYSKHKYHCICPMRCAEDPDRLYKYATKLKKNCKEITDKELDKKMKE 118 Query 121 LRTVLDTPDAETPSLCFHNDVTCNMRAEYSVMQDVY-INAPGTIYHQAMKGVRTLYWIGF 179 L V+ PD ET ++C H+D +C + +V QDVY ++ P ++YHQA KGVR YWIGF Sbjct 119 LAAVMSDPDLETETMCLHDDESCRYEGQVAVYQDVYAVDGPTSLYHQANKGVRVAYWIGF 178 Query 180 DTTQFMFSAMAGSYPAYNTNWADEKVLEARNIGLCSTKLSEGRTGKLSIMRKKELKPGSR 239 DTT FMF +AG+YP+Y+TNWADE VL ARNIGLCS+ + E +SI+RKK LKP + Sbjct 179 DTTPFMFKNLAGAYPSYSTNWADETVLTARNIGLCSSDVMERSRRGMSILRKKYLKPSNN 238 Query 240 VYFSVGSTLYPEHRASLQSWHLPSVFHLNGKQSYTCRCDTVVSCEGYVVKKITISPGITG 299 V FSVGST+Y E R L+SWHLPSVFHL GKQ+YTCRC+T+VSC+GYVVK+I ISPG+ G Sbjct 239 VLFSVGSTIYHEKRDLLRSWHLPSVFHLRGKQNYTCRCETIVSCDGYVVKRIAISPGLYG 298 Query 300 ETVGYAVTHNSEGFLLCKVTDTVKGERVSFPVCTYIPATICDQMTGIMATDISPDDAQKL 359 + GYA T + EGFL CKVTDT+ GERVSFPVCTY+PAT+CDQMTGI+ATD+S DDAQKL Sbjct 299 KPSGYAATMHREGFLCCKVTDTLNGERVSFPVCTYVPATLCDQMTGILATDVSADDAQKL 358 Query 360 LVGLNQRIVINGRTNRNTNTMQNYLLPIIAQGFSKWAKERKDDLDNEKMLGTRERKLTYG 419 LVGLNQRIV+NGRT RNTNTM+NYLLP++AQ F++WAKE K+D ++E+ LG R+R+L G Sbjct 359 LVGLNQRIVVNGRTQRNTNTMKNYLLPVVAQAFARWAKEYKEDQEDERPLGLRDRQLVMG 418 Query 420 CLWAFRTKKVHSFYRPPGTQTCVKVPASFSAFPMSSVWTTSLPMSLRQKLKLALQPKKEE 479 C WAFR K+ S Y+ P TQT +KV + F +F + + + +L + LR +++ L+ KE Sbjct 419 CCWAFRRHKITSIYKRPDTQTIIKVNSDFHSFVLPRIGSNTLEIGLRTRIRKMLEEHKEP 478 Query 480 KLLQVSEELVMEAKAAFEDaqeearaeklrealPPLVAD 518 L +E+ + EAK A ++A+E AE+LR LPPL AD Sbjct 479 SPLITAED-IQEAKCAADEAKEVREAEELRAVLPPLAAD 516 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Western equine encephalitis virus] Sequence ID: P13896.3 Length: 2467 Range 1: 1 to 472 Score:652 bits(1682), Expect:0.0, Method:Compositional matrix adjust., Identities:304/476(64%), Positives:373/476(78%), Gaps:5/476(1%) Query 1 MEKPVVNVDVDPQSPFVVQLQKSFPQFEVVAQQVTPNDHANARAFSHLASKLIELEVPTT 60 ME+ ++VD+D SP+V LQ++FPQFE+ A+QVT NDHANARAFSH+A+KLIE EV Sbjct 1 MER--IHVDLDADSPYVKSLQRTFPQFEIEARQVTDNDHANARAFSHVATKLIESEVDRD 58 Query 61 ATILDIGSAPARRMFSEHQYHCVCPMRSPEDPDRMMKYASKLAEKACKITNKNLHEKIKD 120 ILDIGSAP R S H+YHC+CPM S EDPDR+ +YA +L K IT+KN+ K D Sbjct 59 QVILDIGSAPVRHAHSNHRYHCICPMISAEDPDRLQRYAERL--KKSDITDKNIASKAAD 116 Query 121 LRTVLDTPDAETPSLCFHNDVTCNMRAEYSVMQDVY-INAPGTIYHQAMKGVRTLYWIGF 179 L V+ TPDAETPSLC H D TC +V QDVY ++AP +IYHQA+KGVRT+YWIGF Sbjct 117 LLEVMSTPDAETPSLCMHTDATCRYFGSVAVYQDVYAVHAPTSIYHQALKGVRTIYWIGF 176 Query 180 DTTQFMFSAMAGSYPAYNTNWADEKVLEARNIGLCSTKLSEGRTGKLSIMRKKELKPGSR 239 DTT FM+ MAGSYP YNTNWADE+VLEARNIGL ++ L E R GKLSI+RKK L+P ++ Sbjct 177 DTTPFMYKNMAGSYPTYNTNWADERVLEARNIGLGNSDLQESRLGKLSILRKKRLQPTNK 236 Query 240 VYFSVGSTLYPEHRASLQSWHLPSVFHLNGKQSYTCRCDTVVSCEGYVVKKITISPGITG 299 + FSVGST+Y E R+ L+SWHLP+VFHL GK ++T RC T+VSCEGYV+KKITISPG+ G Sbjct 237 IIFSVGSTIYTEDRSLLRSWHLPNVFHLKGKSNFTGRCGTIVSCEGYVIKKITISPGLYG 296 Query 300 ETVGYAVTHNSEGFLLCKVTDTVKGERVSFPVCTYIPATICDQMTGIMATDISPDDAQKL 359 + A T + EGFL CKVTDT++GERVSF VCTY+PAT+CDQMTGI+ATD+S DDAQKL Sbjct 297 KVENLASTMHREGFLSCKVTDTLRGERVSFAVCTYVPATLCDQMTGILATDVSVDDAQKL 356 Query 360 LVGLNQRIVINGRTNRNTNTMQNYLLPIIAQGFSKWAKERKDDLDNEKMLGTRERKLTYG 419 LVGLNQRIV+NGRT RNTNTMQNYLLP++AQ FS+WA+E + DLD+EK LG RER LT G Sbjct 357 LVGLNQRIVVNGRTQRNTNTMQNYLLPVVAQAFSRWAREHRADLDDEKELGVRERTLTMG 416 Query 420 CLWAFRTKKVHSFYRPPGTQTCVKVPASFSAFPMSSVWTTSLPMSLRQKLKLALQP 475 C WAF+T+K+ S Y+ PGTQT KVPA F +F + + + L M R++LKL L+P Sbjct 417 CCWAFKTQKITSIYKKPGTQTIKKVPAVFDSFVIPRLTSHGLDMGFRRRLKLLLEP 472 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Venezuelan equine encephalitis virus (strain Mena II)] Sequence ID: Q9WJC7.3 Length: 2499 Range 1: 1 to 516 Score:649 bits(1674), Expect:0.0, Method:Compositional matrix adjust., Identities:313/519(60%), Positives:403/519(77%), Gaps:4/519(0%) Query 1 MEKPVVNVDVDPQSPFVVQLQKSFPQFEVVAQQVTPNDHANARAFSHLASKLIELEVPTT 60 MEK V+VD++ SPF+ LQ+SFPQFEV A+QVT NDHANARAFSHLASKLIE EV + Sbjct 1 MEK--VHVDIEEDSPFLRALQRSFPQFEVEAKQVTDNDHANARAFSHLASKLIETEVEPS 58 Query 61 ATILDIGSAPARRMFSEHQYHCVCPMRSPEDPDRMMKYASKLAEKACKITNKNLHEKIKD 120 TILDIGSAPARRM+S+H+YHC+CPM+ EDPDR+ KYA+KL + +IT+K L +K+K+ Sbjct 59 DTILDIGSAPARRMYSKHKYHCICPMKCAEDPDRLFKYAAKLKKNCKEITDKELDKKMKE 118 Query 121 LRTVLDTPDAETPSLCFHNDVTCNMRAEYSVMQDVY-INAPGTIYHQAMKGVRTLYWIGF 179 L V++ PD ET ++C H+D TC + +V QDVY ++ P ++YHQA KGVR YWIGF Sbjct 119 LAEVMNDPDLETETICLHDDETCRFEGQVAVYQDVYAVDGPTSLYHQANKGVRVAYWIGF 178 Query 180 DTTQFMFSAMAGSYPAYNTNWADEKVLEARNIGLCSTKLSEGRTGKLSIMRKKELKPGSR 239 DTT FMF +AG+YP+Y+TNWADE VL ARNIGLCS+ + E +SI+RKK LKP + Sbjct 179 DTTPFMFKNLAGAYPSYSTNWADETVLTARNIGLCSSDVMERSRRGMSILRKKFLKPSNN 238 Query 240 VYFSVGSTLYPEHRASLQSWHLPSVFHLNGKQSYTCRCDTVVSCEGYVVKKITISPGITG 299 V FSVGST+Y E R L+SWHLPSVFHL GKQ+YTCRC+T+VSC+GYVVK+I ISPG+ G Sbjct 239 VLFSVGSTIYHEKRDLLRSWHLPSVFHLRGKQNYTCRCETIVSCDGYVVKRIAISPGLYG 298 Query 300 ETVGYAVTHNSEGFLLCKVTDTVKGERVSFPVCTYIPATICDQMTGIMATDISPDDAQKL 359 + GYA T + EGFL CKVTDT+ GERVSFPVCTY+PAT+CDQMTGI+ATD+S DDAQKL Sbjct 299 KPSGYAATMHREGFLCCKVTDTLNGERVSFPVCTYVPATLCDQMTGILATDVSADDAQKL 358 Query 360 LVGLNQRIVINGRTNRNTNTMQNYLLPIIAQGFSKWAKERKDDLDNEKMLGTRERKLTYG 419 LVGLNQRIV+NGRT RNTNTM+NYLLP++AQ F++WAKE K+D ++E+ LG R+R+L G Sbjct 359 LVGLNQRIVVNGRTQRNTNTMKNYLLPVVAQAFARWAKEYKEDQEDERPLGLRDRQLVMG 418 Query 420 CLWAFRTKKVHSFYRPPGTQTCVKVPASFSAFPMSSVWTTSLPMSLRQKLKLALQPKKEE 479 C WAFR K+ S Y+ P TQT +KV + F +F + + +++L + LR ++K L+ + Sbjct 419 CCWAFRKHKITSVYKRPDTQTIIKVNSDFHSFVLPRIGSSTLEIGLRTRIKKLLEEPVDR 478 Query 480 KLLQVSEELVMEAKAAFEDaqeearaeklrealPPLVAD 518 L +++ + EAK A ++A+E AE+LR ALPPL AD Sbjct 479 PPLITADD-IQEAKNAADEAKEVKEAEELRAALPPLSAD 516 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Eastern equine encephalitis virus (strain PE-0.0155)] Sequence ID: Q306W6.3 Length: 2471 Range 1: 1 to 475 Score:647 bits(1670), Expect:0.0, Method:Compositional matrix adjust., Identities:307/479(64%), Positives:372/479(77%), Gaps:5/479(1%) Query 1 MEKPVVNVDVDPQSPFVVQLQKSFPQFEVVAQQVTPNDHANARAFSHLASKLIELEVPTT 60 MEK V+VD+D SP+V LQK FP FE+ A QVT NDHANARAFSHLA+KLIE EV Sbjct 1 MEK--VHVDLDADSPYVKSLQKCFPHFEIEATQVTDNDHANARAFSHLATKLIESEVDPD 58 Query 61 ATILDIGSAPARRMFSEHQYHCVCPMRSPEDPDRMMKYASKLAEKACKITNKNLHEKIKD 120 ILDIGSAP R S+H+YHC+CPM S EDPDR+ +YA KL + +T++ + K D Sbjct 59 QVILDIGSAPVRHTHSKHKYHCICPMISAEDPDRLHRYADKL--RKSDVTDRFIASKAAD 116 Query 121 LRTVLDTPDAETPSLCFHNDVTCNMRAEYSVMQDVY-INAPGTIYHQAMKGVRTLYWIGF 179 L TV+ TPD ETPSLC H D TC +V QDVY ++AP +IYHQA+KGVRT+YWIGF Sbjct 117 LLTVMSTPDVETPSLCMHTDSTCRYHGTVAVYQDVYAVHAPTSIYHQALKGVRTIYWIGF 176 Query 180 DTTQFMFSAMAGSYPAYNTNWADEKVLEARNIGLCSTKLSEGRTGKLSIMRKKELKPGSR 239 DTT FM+ MAG+YP YNTNWADE VLEARNIGLCS+ L E R GK+SIMRKK+L+P ++ Sbjct 177 DTTPFMYKNMAGAYPTYNTNWADESVLEARNIGLCSSDLHEQRFGKISIMRKKKLQPTNK 236 Query 240 VYFSVGSTLYPEHRASLQSWHLPSVFHLNGKQSYTCRCDTVVSCEGYVVKKITISPGITG 299 V FSVGST+Y E R L+SWHLP+VFHL GK S+T RC+T+VSCEGYVVKKITISPGI G Sbjct 237 VVFSVGSTIYTEERILLRSWHLPNVFHLKGKTSFTGRCNTIVSCEGYVVKKITISPGIYG 296 Query 300 ETVGYAVTHNSEGFLLCKVTDTVKGERVSFPVCTYIPATICDQMTGIMATDISPDDAQKL 359 + A T + EGFL CKVTDT++GERVSFPVCTY+PAT+CDQMTGI+ATD+S DDAQKL Sbjct 297 KVDNLASTMHREGFLSCKVTDTLRGERVSFPVCTYVPATLCDQMTGILATDVSVDDAQKL 356 Query 360 LVGLNQRIVINGRTNRNTNTMQNYLLPIIAQGFSKWAKERKDDLDNEKMLGTRERKLTYG 419 LVGLNQRIV+NGRT RNTNTM NYLLPI+AQ FS+WA+E DL++EK LG RER L G Sbjct 357 LVGLNQRIVVNGRTQRNTNTMPNYLLPIVAQAFSRWAREYHADLEDEKDLGVRERSLVMG 416 Query 420 CLWAFRTKKVHSFYRPPGTQTCVKVPASFSAFPMSSVWTTSLPMSLRQKLKLALQPKKE 478 C WAF+T K+ S Y+ PGTQT KVPA F++F + + + L + LR+++K+ L+ KK+ Sbjct 417 CCWAFKTHKITSIYKKPGTQTTKKVPAVFNSFVVPQLTSYGLDIELRRRIKMLLEEKKK 475 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Eastern equine encephalitis virus (strain PE-3.0815)] Sequence ID: Q306W8.3 Length: 2474 Range 1: 1 to 475 Score:647 bits(1670), Expect:0.0, Method:Compositional matrix adjust., Identities:305/479(64%), Positives:373/479(77%), Gaps:5/479(1%) Query 1 MEKPVVNVDVDPQSPFVVQLQKSFPQFEVVAQQVTPNDHANARAFSHLASKLIELEVPTT 60 MEK V+VD+D SP+V LQK FP FE+ A QVT NDHANARAFSHLA+KLIE EV Sbjct 1 MEK--VHVDLDADSPYVKLLQKCFPHFEIEATQVTDNDHANARAFSHLATKLIESEVDPD 58 Query 61 ATILDIGSAPARRMFSEHQYHCVCPMRSPEDPDRMMKYASKLAEKACKITNKNLHEKIKD 120 ILDIGSAP R S+H+YHC+CPM S EDPDR+ +YA KL + +T++ + K D Sbjct 59 QVILDIGSAPVRHTHSKHKYHCICPMISAEDPDRLQRYADKL--RKSDVTDRFIASKAAD 116 Query 121 LRTVLDTPDAETPSLCFHNDVTCNMRAEYSVMQDVY-INAPGTIYHQAMKGVRTLYWIGF 179 L TV+ TPD ETPSLC H D TC +V QDVY ++AP +IYHQA+KGVRT+YWIGF Sbjct 117 LLTVMSTPDVETPSLCMHTDSTCRYHGTVAVYQDVYAVHAPTSIYHQALKGVRTIYWIGF 176 Query 180 DTTQFMFSAMAGSYPAYNTNWADEKVLEARNIGLCSTKLSEGRTGKLSIMRKKELKPGSR 239 DTT FM+ MAG+YP YNTNWADE VLEARNIGLCS+ L E R GK+SIMRKK+L+P ++ Sbjct 177 DTTPFMYKNMAGAYPTYNTNWADESVLEARNIGLCSSDLHEKRLGKISIMRKKKLQPTNK 236 Query 240 VYFSVGSTLYPEHRASLQSWHLPSVFHLNGKQSYTCRCDTVVSCEGYVVKKITISPGITG 299 V FSVGST+Y E R L+SWHLP+VFHL GK S+T RC+T+VSC+GYVVKKITISPGI G Sbjct 237 VVFSVGSTIYTEERILLRSWHLPNVFHLKGKTSFTGRCNTIVSCDGYVVKKITISPGIYG 296 Query 300 ETVGYAVTHNSEGFLLCKVTDTVKGERVSFPVCTYIPATICDQMTGIMATDISPDDAQKL 359 + A T + EGFL CKVTDT++GERVSFPVCTY+PAT+CDQMTGI+ATD+S DDAQKL Sbjct 297 KVDNLASTLHREGFLSCKVTDTLRGERVSFPVCTYVPATLCDQMTGILATDVSVDDAQKL 356 Query 360 LVGLNQRIVINGRTNRNTNTMQNYLLPIIAQGFSKWAKERKDDLDNEKMLGTRERKLTYG 419 LVGLNQRIV+NGRT RNTNTMQNYLLP++AQ FS+WA+E + DL++EK LG RER L G Sbjct 357 LVGLNQRIVVNGRTQRNTNTMQNYLLPVVAQAFSRWAREYRADLEDEKDLGVRERSLVMG 416 Query 420 CLWAFRTKKVHSFYRPPGTQTCVKVPASFSAFPMSSVWTTSLPMSLRQKLKLALQPKKE 478 C WAF+T K+ S Y+ PGTQT KVPA F++F + + L + LR+++K+ L+ K++ Sbjct 417 CCWAFKTHKITSIYKKPGTQTIKKVPAVFNSFVIPQFNSYGLNIGLRRRIKMLLEEKRK 475 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Venezuelan equine encephalitis virus (strain CPA201)] Sequence ID: Q8V294.3 Length: 2497 Range 1: 1 to 516 Score:647 bits(1668), Expect:0.0, Method:Compositional matrix adjust., Identities:312/519(60%), Positives:400/519(77%), Gaps:4/519(0%) Query 1 MEKPVVNVDVDPQSPFVVQLQKSFPQFEVVAQQVTPNDHANARAFSHLASKLIELEVPTT 60 MEK V+VD++ SPF+ LQ+SFPQFEV A+QVT NDHANARAFSHLASKLIE EV + Sbjct 1 MEK--VHVDIEEDSPFLRALQRSFPQFEVEAKQVTDNDHANARAFSHLASKLIETEVEPS 58 Query 61 ATILDIGSAPARRMFSEHQYHCVCPMRSPEDPDRMMKYASKLAEKACKITNKNLHEKIKD 120 TILDIGSAPARRM+S+H+YHC+CPM+ EDPDR+ KYA+KL + IT+K L +K+K+ Sbjct 59 DTILDIGSAPARRMYSKHKYHCICPMKCAEDPDRLFKYAAKLKKNCKDITDKELDKKMKE 118 Query 121 LRTVLDTPDAETPSLCFHNDVTCNMRAEYSVMQDVY-INAPGTIYHQAMKGVRTLYWIGF 179 L V+ PD ET ++C H+D TC + +V QDVY ++ P ++YHQA KGVR YWIGF Sbjct 119 LAEVMSDPDLETETICLHDDETCRFEGQVAVYQDVYAVDGPTSLYHQANKGVRVAYWIGF 178 Query 180 DTTQFMFSAMAGSYPAYNTNWADEKVLEARNIGLCSTKLSEGRTGKLSIMRKKELKPGSR 239 DTT FMF +AG+YP+Y+TNWADE VL ARNIGLCS+ + E +SI+RKK LKP + Sbjct 179 DTTPFMFKNLAGAYPSYSTNWADETVLTARNIGLCSSDVMERSRRGMSILRKKFLKPSNN 238 Query 240 VYFSVGSTLYPEHRASLQSWHLPSVFHLNGKQSYTCRCDTVVSCEGYVVKKITISPGITG 299 V FSVGST+Y E R L+SWHLPSVFHL GKQ+YTCRC+T+VSC+GYVVK+I ISPG+ G Sbjct 239 VLFSVGSTIYHEKRDLLRSWHLPSVFHLRGKQNYTCRCETIVSCDGYVVKRIAISPGLYG 298 Query 300 ETVGYAVTHNSEGFLLCKVTDTVKGERVSFPVCTYIPATICDQMTGIMATDISPDDAQKL 359 + GYA T + EGFL CKVTDT+ GERVSFPVCTY+PAT+CDQMTGI+ATD+S DDAQKL Sbjct 299 KPSGYAATMHREGFLCCKVTDTLDGERVSFPVCTYVPATLCDQMTGILATDVSADDAQKL 358 Query 360 LVGLNQRIVINGRTNRNTNTMQNYLLPIIAQGFSKWAKERKDDLDNEKMLGTRERKLTYG 419 LVGLNQRIV+NGRT RNTNTM+NYLLP++AQ F++WAKE K+D ++E+ LG R+R+L G Sbjct 359 LVGLNQRIVVNGRTQRNTNTMKNYLLPVVAQAFARWAKEYKEDQEDERPLGLRDRQLVMG 418 Query 420 CLWAFRTKKVHSFYRPPGTQTCVKVPASFSAFPMSSVWTTSLPMSLRQKLKLALQPKKEE 479 C WAFR K+ S Y+ P TQT +KV + F +F + + + +L + LR +++ L+ + Sbjct 419 CCWAFRKHKITSVYKRPDTQTIIKVNSDFHSFVLPRIGSNTLEIGLRTRIRKLLEEPVDR 478 Query 480 KLLQVSEELVMEAKAAFEDaqeearaeklrealPPLVAD 518 L +++ + EAK A ++A+E AE+LR ALPPL AD Sbjct 479 PPLITADD-IQEAKNAADEAKEVKEAEELRAALPPLSAD 516 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Eastern equine encephalitis virus (strain Florida 91-469)] Sequence ID: Q4QXJ8.3 Length: 2494 Range 1: 1 to 474 Score:645 bits(1663), Expect:0.0, Method:Compositional matrix adjust., Identities:305/478(64%), Positives:371/478(77%), Gaps:5/478(1%) Query 1 MEKPVVNVDVDPQSPFVVQLQKSFPQFEVVAQQVTPNDHANARAFSHLASKLIELEVPTT 60 MEK V+VD+D SPFV LQ+ FP FE+ A QVT NDHANARAFSHLA+KLIE EV T Sbjct 1 MEK--VHVDLDADSPFVKSLQRCFPHFEIEATQVTDNDHANARAFSHLATKLIEGEVDTD 58 Query 61 ATILDIGSAPARRMFSEHQYHCVCPMRSPEDPDRMMKYASKLAEKACKITNKNLHEKIKD 120 ILDIGSAP R S+H+YHC+CPM+S EDPDR+ +YA KL + +T+K + K D Sbjct 59 QVILDIGSAPVRHTHSKHKYHCICPMKSAEDPDRLYRYADKL--RKSDVTDKCIASKAAD 116 Query 121 LRTVLDTPDAETPSLCFHNDVTCNMRAEYSVMQDVY-INAPGTIYHQAMKGVRTLYWIGF 179 L TV+ TPDAETPSLC H D TC +V QDVY ++AP +IY+QA+KGVRT+YWIGF Sbjct 117 LLTVMSTPDAETPSLCMHTDSTCRYHGSVAVYQDVYAVHAPTSIYYQALKGVRTIYWIGF 176 Query 180 DTTQFMFSAMAGSYPAYNTNWADEKVLEARNIGLCSTKLSEGRTGKLSIMRKKELKPGSR 239 DTT FM+ MAG+YP YNTNWADE VLEARNIGL S+ L E GK+SIMRKK+L+P ++ Sbjct 177 DTTPFMYKNMAGAYPTYNTNWADESVLEARNIGLGSSDLHEKSFGKVSIMRKKKLQPTNK 236 Query 240 VYFSVGSTLYPEHRASLQSWHLPSVFHLNGKQSYTCRCDTVVSCEGYVVKKITISPGITG 299 V FSVGST+Y E R L+SWHLP+VFHL GK S+T RC+T+VSCEGYVVKKIT+SPGI G Sbjct 237 VIFSVGSTIYTEERILLRSWHLPNVFHLKGKTSFTGRCNTIVSCEGYVVKKITLSPGIYG 296 Query 300 ETVGYAVTHNSEGFLLCKVTDTVKGERVSFPVCTYIPATICDQMTGIMATDISPDDAQKL 359 + A T + EGFL CKVTDT++GERVSFPVCTY+PAT+CDQMTGI+ATD+S DDAQKL Sbjct 297 KVDNLASTMHREGFLSCKVTDTLRGERVSFPVCTYVPATLCDQMTGILATDVSVDDAQKL 356 Query 360 LVGLNQRIVINGRTNRNTNTMQNYLLPIIAQGFSKWAKERKDDLDNEKMLGTRERKLTYG 419 LVGLNQRIV+NGRT RNTNTMQNYLLP++AQ FS+WA+E + DL++EK LG RER L G Sbjct 357 LVGLNQRIVVNGRTQRNTNTMQNYLLPVVAQAFSRWAREHRADLEDEKGLGVRERSLVMG 416 Query 420 CLWAFRTKKVHSFYRPPGTQTCVKVPASFSAFPMSSVWTTSLPMSLRQKLKLALQPKK 477 C WAF+T K+ S Y+ PGTQT KVPA F++F + + L + LR+++K+ KK Sbjct 417 CCWAFKTHKITSIYKRPGTQTIKKVPAVFNSFVIPQPTSYGLDIGLRRRIKMLFDAKK 474 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Salmon pancreas disease virus] Sequence ID: Q8JJX1.1 Length: 2601 Range 1: 15 to 518 Score:417 bits(1071), Expect:2e-128, Method:Compositional matrix adjust., Identities:226/505(45%), Positives:308/505(60%), Gaps:14/505(2%) Query 6 VNVDVDPQSPFVVQLQKSFPQFEVVAQQVTPNDHANARAFSHLASKLIELEVPTTATIL- 64 V V++ P + Q + +FP FEVVA + NDHA ARAFSHLA+K IE ++ I+ Sbjct 15 VTVNLPADHPALNQFKTAFPGFEVVASNRSSNDHAAARAFSHLATKWIERDIGGRQVIVA 74 Query 65 DIGSAPARRMFSEHQ--YHCVCPMRSPEDPDRMMKYASKLAEKACKITNKNLHEKIKDLR 122 DIGSAPARR+ + YH VCP + EDP+R+ YA KL + ++EKI DL+ Sbjct 75 DIGSAPARRIGAPDNVTYHSVCPRKCAEDPERLASYARKLVRAVERGDGHLVNEKITDLK 134 Query 123 TVLDTPDA--ETPSLCFHNDVTCNMRAEYSVMQDVY-INAPGTIYHQAMKGVRTLYWIGF 179 VL+ PD ET S+C ++DV+C ++A+ +V QDVY ++AP TIY QA KG R +YWIGF Sbjct 135 DVLENPDTSLETTSICLNDDVSCKVKADIAVYQDVYAVDAPSTIYAQADKGTRVVYWIGF 194 Query 180 DTTQFMFSAMAGSYPAYNTNWADEKVLEARNIGLCSTKLSEGRTGKLSIMRKKELKPGSR 239 + F AMAGS+P Y+ NW+D VL A+N+ LC + LSE R K L P Sbjct 195 EPFVFHTDAMAGSFPLYDANWSDSAVLAAKNLPLCYSGLSEDSIKWRFRFRDKPLVPSGE 254 Query 240 VYFSVGSTLYPEHRASLQSWHLPSVFHLNGKQSYTCRCDTVVSCEGYVVKKITISPGITG 299 +++SVGST Y E R L+SWHLPS FH YTCRCDTVVSC GYVVKKITI GI G Sbjct 255 IHYSVGSTHYVEDRDKLKSWHLPSTFHFVAPNKYTCRCDTVVSCGGYVVKKITICEGIVG 314 Query 300 --ETVGYAVTHNSEGFLLCKVTDTVKGERVSFPVCTYIPATICDQMTGIMATDISPDDAQ 357 A +++ +G ++ K +DT+ E+VSFPV TYIPA ICDQMT + A + DA Sbjct 315 IPAKEELATSYHRDGVVVTKFSDTINHEQVSFPVVTYIPAVICDQMTAMTANPVKYSDAV 374 Query 358 KLLVGLNQRIVINGRTNRNTNTMQNYLLPIIAQGFSKWAKERKDDLDNEKMLGTRERKLT 417 KLLVGLNQRIV+NG T RN N+M N L+P+ A+ WA E + D+++E+ L T Sbjct 375 KLLVGLNQRIVVNGTTVRNVNSMDNSLIPVFARALCSWADEVRRDMEDEQDLYGITSVTT 434 Query 418 YGCLW-AFRTKKVHSFYRPPGTQTCVKVPASFSAFPMSSVWTT----SLPMSLRQKLKLA 472 + C+ A+ ++ H+FYR P + + VPA F+ +++ T L L LK A Sbjct 435 WICICRAYDKRQQHTFYRRPKQSSGIYVPAKFTGSLRAALSATYLNLPLKQLLLNTLKRA 494 Query 473 LQPKKEEKLLQVSEELVMEAKAAFE 497 ++P ++ + +E L +A E Sbjct 495 IKP-MDQAIADETEALAHDAAEVHE 518 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Sleeping disease virus] Sequence ID: Q8QL53.1 Length: 2593 Range 1: 15 to 477 Score:414 bits(1065), Expect:1e-127, Method:Compositional matrix adjust., Identities:215/463(46%), Positives:289/463(62%), Gaps:9/463(1%) Query 6 VNVDVDPQSPFVVQLQKSFPQFEVVAQQVTPNDHANARAFSHLASKLIELEVPTTATIL- 64 V VD+ P + Q + +FP FEVVA + NDHA ARAFSHLA+K IE ++ I+ Sbjct 15 VTVDLPADHPALNQFKTAFPGFEVVASNRSSNDHAAARAFSHLATKWIERDIDGRQVIVA 74 Query 65 DIGSAPARRMFSEHQ--YHCVCPMRSPEDPDRMMKYASKLAEKACKITNKNLHEKIKDLR 122 DIGSAPARR+ + YH VCP + EDP+R+ YA KL K + ++I DL+ Sbjct 75 DIGSAPARRVGAPDNVTYHSVCPRKCAEDPERLASYARKLVRAVEKGDGHLVSDRITDLK 134 Query 123 TVLDTPDA--ETPSLCFHNDVTCNMRAEYSVMQDVY-INAPGTIYHQAMKGVRTLYWIGF 179 VL+ PD ET S+C ++DV+C ++A+ +V QDVY ++AP TIY QA KG R +YWIGF Sbjct 135 DVLENPDTSLETTSICLNDDVSCKVKADIAVYQDVYAVDAPSTIYAQADKGTRVVYWIGF 194 Query 180 DTTQFMFSAMAGSYPAYNTNWADEKVLEARNIGLCSTKLSEGRTGKLSIMRKKELKPGSR 239 + F AMAGS+P Y+ NW+D VL A+N+ LC + LSE R K L P Sbjct 195 EPFVFHTDAMAGSFPLYDANWSDSAVLAAKNLPLCYSGLSEDSIKWRFRFRDKPLVPSGE 254 Query 240 VYFSVGSTLYPEHRASLQSWHLPSVFHLNGKQSYTCRCDTVVSCEGYVVKKITISPGITG 299 +++SVGST Y E R L+SWHLPS FH YTCRCDTVVSC GYVVKKITI GI G Sbjct 255 IHYSVGSTHYVEDRDKLKSWHLPSTFHFVAPNKYTCRCDTVVSCGGYVVKKITICEGIVG 314 Query 300 ETVG--YAVTHNSEGFLLCKVTDTVKGERVSFPVCTYIPATICDQMTGIMATDISPDDAQ 357 A +++ +G ++ K +DT+ E+VSFPV TYIPA ICDQMT + A + D Sbjct 315 RPANEELATSYHRDGVVVTKFSDTINHEQVSFPVVTYIPAVICDQMTAMTADPVKYPDVV 374 Query 358 KLLVGLNQRIVINGRTNRNTNTMQNYLLPIIAQGFSKWAKERKDDLDNEKMLGTRERKLT 417 KLLVGLNQRIV+NG T RN N+M N L+P+ A+ WA E + D+++E+ + T Sbjct 375 KLLVGLNQRIVVNGTTVRNVNSMDNSLIPVFARALCSWADEARRDMEDEQDMYGVTSVTT 434 Query 418 YGCLW-AFRTKKVHSFYRPPGTQTCVKVPASFSAFPMSSVWTT 459 + C+ A+ ++ H+FYR P + + VPA F+ +S+ T Sbjct 435 WICICRAYDKRQQHTFYRRPKQSSGIYVPAKFTGSLRASLSAT 477