RID: 9UJXM0HE013 Job Title:mRNA-capping enzyme nsP1 Program: BLASTP Query: POLN_WEEV P13896 Polyprotein P1234 (P1234) | mRNA-capping enzyme nsP1 (2.1.1.- {ECO:0000250|UniProtKB:P36328}) (2.7.7.- {ECO:0000250|UniProtKB:P36328}) OS=Western equine encephalitis virus OX=11039 PE=3 SV=3 ID: lcl|Query_6779(amino acid) Length: 533 Database: swissprot Non-redundant UniProtKB/SwissProt sequences Sequences producing significant alignments: Scientific Common Max Total Query E Per. Acc. Description Name Name Taxid Score Score cover Value Ident Len Accession RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Western equi... NA 11039 1113 1113 100% 0.0 100.00 2467 P13896.3 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Eastern equi... NA 374596 961 961 100% 0.0 84.99 2471 Q306W6.3 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Semliki Fore... NA 11033 740 740 99% 0.0 66.17 2432 P08411.2 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Getah virus NA 59300 715 715 87% 0.0 70.00 2467 Q5Y389.3 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Sagiyama virus NA 59303 714 714 87% 0.0 70.00 2467 Q9JGL0.3 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Chikungunya ... NA 371094 699 699 100% 0.0 62.62 2474 Q8JUX6.1 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Ross river v... NA 11031 697 697 99% 0.0 64.04 2480 P13887.2 Alignments: >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Western equine encephalitis virus] Sequence ID: P13896.3 Length: 2467 Range 1: 1 to 533 Score:1113 bits(2879), Expect:0.0, Method:Compositional matrix adjust., Identities:533/533(100%), Positives:533/533(100%), Gaps:0/533(0%) Query 1 MERIHVDLDADSPYVKSLQRTFPQFEIEARQVTDNDHANARAFSHVATKLIESEVDRDQV 60 MERIHVDLDADSPYVKSLQRTFPQFEIEARQVTDNDHANARAFSHVATKLIESEVDRDQV Sbjct 1 MERIHVDLDADSPYVKSLQRTFPQFEIEARQVTDNDHANARAFSHVATKLIESEVDRDQV 60 Query 61 ILDIGSAPVRHAHSNHRYHCICPMISAEDPDRLQRYAERLKKSDITDKNIASKAADLLEV 120 ILDIGSAPVRHAHSNHRYHCICPMISAEDPDRLQRYAERLKKSDITDKNIASKAADLLEV Sbjct 61 ILDIGSAPVRHAHSNHRYHCICPMISAEDPDRLQRYAERLKKSDITDKNIASKAADLLEV 120 Query 121 MSTPDAETPSLCMHTDATCRYFGSVAVYQDVYAVHAPTSIYHQALKGVRTIYWIGFDTTP 180 MSTPDAETPSLCMHTDATCRYFGSVAVYQDVYAVHAPTSIYHQALKGVRTIYWIGFDTTP Sbjct 121 MSTPDAETPSLCMHTDATCRYFGSVAVYQDVYAVHAPTSIYHQALKGVRTIYWIGFDTTP 180 Query 181 FMYKNMAGSYPTYNTNWADERVLEARNIGLGNSDLQESRLGKLSILRKKRLQPTNKIIFS 240 FMYKNMAGSYPTYNTNWADERVLEARNIGLGNSDLQESRLGKLSILRKKRLQPTNKIIFS Sbjct 181 FMYKNMAGSYPTYNTNWADERVLEARNIGLGNSDLQESRLGKLSILRKKRLQPTNKIIFS 240 Query 241 VGSTIYTEDRSLLRSWHLPNVFHLKGKSNFTGRCGTIVSCEGYVIKKITISPGLYGKVEN 300 VGSTIYTEDRSLLRSWHLPNVFHLKGKSNFTGRCGTIVSCEGYVIKKITISPGLYGKVEN Sbjct 241 VGSTIYTEDRSLLRSWHLPNVFHLKGKSNFTGRCGTIVSCEGYVIKKITISPGLYGKVEN 300 Query 301 LASTMHREGFLSCKVTDTLRGERVSFAVCTYVPATLCDQMTGILATDVSVDDAQKLLVGL 360 LASTMHREGFLSCKVTDTLRGERVSFAVCTYVPATLCDQMTGILATDVSVDDAQKLLVGL Sbjct 301 LASTMHREGFLSCKVTDTLRGERVSFAVCTYVPATLCDQMTGILATDVSVDDAQKLLVGL 360 Query 361 NQRIVVNGRTQRNTNTMQNYLLPVVAQAFSRWAREHRADLDDEKELGVRERTLTMGCCWA 420 NQRIVVNGRTQRNTNTMQNYLLPVVAQAFSRWAREHRADLDDEKELGVRERTLTMGCCWA Sbjct 361 NQRIVVNGRTQRNTNTMQNYLLPVVAQAFSRWAREHRADLDDEKELGVRERTLTMGCCWA 420 Query 421 FKTQKITSIYKKPGTQTIKKVPAVFDSFVIPRLTSHGLDMGFRRRLKLLLEPTVKPAPAI 480 FKTQKITSIYKKPGTQTIKKVPAVFDSFVIPRLTSHGLDMGFRRRLKLLLEPTVKPAPAI Sbjct 421 FKTQKITSIYKKPGTQTIKKVPAVFDSFVIPRLTSHGLDMGFRRRLKLLLEPTVKPAPAI 480 Query 481 TMADVEHLRGLQQEAEEVAAAEEIREALPPLLPEIEKETVEAEVDLIMQEAGA 533 TMADVEHLRGLQQEAEEVAAAEEIREALPPLLPEIEKETVEAEVDLIMQEAGA Sbjct 481 TMADVEHLRGLQQEAEEVAAAEEIREALPPLLPEIEKETVEAEVDLIMQEAGA 533 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Eastern equine encephalitis virus (strain PE-0.0155)] Sequence ID: Q306W6.3 Length: 2471 Range 1: 1 to 533 Score:961 bits(2483), Expect:0.0, Method:Compositional matrix adjust., Identities:453/533(85%), Positives:497/533(93%), Gaps:0/533(0%) Query 1 MERIHVDLDADSPYVKSLQRTFPQFEIEARQVTDNDHANARAFSHVATKLIESEVDRDQV 60 ME++HVDLDADSPYVKSLQ+ FP FEIEA QVTDNDHANARAFSH+ATKLIESEVD DQV Sbjct 1 MEKVHVDLDADSPYVKSLQKCFPHFEIEATQVTDNDHANARAFSHLATKLIESEVDPDQV 60 Query 61 ILDIGSAPVRHAHSNHRYHCICPMISAEDPDRLQRYAERLKKSDITDKNIASKAADLLEV 120 ILDIGSAPVRH HS H+YHCICPMISAEDPDRL RYA++L+KSD+TD+ IASKAADLL V Sbjct 61 ILDIGSAPVRHTHSKHKYHCICPMISAEDPDRLHRYADKLRKSDVTDRFIASKAADLLTV 120 Query 121 MSTPDAETPSLCMHTDATCRYFGSVAVYQDVYAVHAPTSIYHQALKGVRTIYWIGFDTTP 180 MSTPD ETPSLCMHTD+TCRY G+VAVYQDVYAVHAPTSIYHQALKGVRTIYWIGFDTTP Sbjct 121 MSTPDVETPSLCMHTDSTCRYHGTVAVYQDVYAVHAPTSIYHQALKGVRTIYWIGFDTTP 180 Query 181 FMYKNMAGSYPTYNTNWADERVLEARNIGLGNSDLQESRLGKLSILRKKRLQPTNKIIFS 240 FMYKNMAG+YPTYNTNWADE VLEARNIGL +SDL E R GK+SI+RKK+LQPTNK++FS Sbjct 181 FMYKNMAGAYPTYNTNWADESVLEARNIGLCSSDLHEQRFGKISIMRKKKLQPTNKVVFS 240 Query 241 VGSTIYTEDRSLLRSWHLPNVFHLKGKSNFTGRCGTIVSCEGYVIKKITISPGLYGKVEN 300 VGSTIYTE+R LLRSWHLPNVFHLKGK++FTGRC TIVSCEGYV+KKITISPG+YGKV+N Sbjct 241 VGSTIYTEERILLRSWHLPNVFHLKGKTSFTGRCNTIVSCEGYVVKKITISPGIYGKVDN 300 Query 301 LASTMHREGFLSCKVTDTLRGERVSFAVCTYVPATLCDQMTGILATDVSVDDAQKLLVGL 360 LASTMHREGFLSCKVTDTLRGERVSF VCTYVPATLCDQMTGILATDVSVDDAQKLLVGL Sbjct 301 LASTMHREGFLSCKVTDTLRGERVSFPVCTYVPATLCDQMTGILATDVSVDDAQKLLVGL 360 Query 361 NQRIVVNGRTQRNTNTMQNYLLPVVAQAFSRWAREHRADLDDEKELGVRERTLTMGCCWA 420 NQRIVVNGRTQRNTNTM NYLLP+VAQAFSRWARE+ ADL+DEK+LGVRER+L MGCCWA Sbjct 361 NQRIVVNGRTQRNTNTMPNYLLPIVAQAFSRWAREYHADLEDEKDLGVRERSLVMGCCWA 420 Query 421 FKTQKITSIYKKPGTQTIKKVPAVFDSFVIPRLTSHGLDMGFRRRLKLLLEPTVKPAPAI 480 FKT KITSIYKKPGTQT KKVPAVF+SFV+P+LTS+GLD+ RRR+K+LLE KPAP I Sbjct 421 FKTHKITSIYKKPGTQTTKKVPAVFNSFVVPQLTSYGLDIELRRRIKMLLEEKKKPAPII 480 Query 481 TMADVEHLRGLQQEAEEVAAAEEIREALPPLLPEIEKETVEAEVDLIMQEAGA 533 T ADV HL+G+Q+EAE VA AE IR ALPPLLPE+E+ETVEA++DLIMQEAGA Sbjct 481 TEADVAHLKGMQEEAEVVAEAEAIRAALPPLLPEVERETVEADIDLIMQEAGA 533 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Semliki Forest virus] Sequence ID: P08411.2 Length: 2432 Range 1: 4 to 537 Score:740 bits(1911), Expect:0.0, Method:Compositional matrix adjust., Identities:354/535(66%), Positives:425/535(79%), Gaps:5/535(0%) Query 3 RIHVDLDADSPYVKSLQRTFPQFEIEARQVTDNDHANARAFSHVATKLIESEVDRDQVIL 62 ++HVD++ADSP++KSLQ+ FP FE+E+ QVT NDHANARAFSH+ATKLIE E D+D +IL Sbjct 4 KVHVDIEADSPFIKSLQKAFPSFEVESLQVTPNDHANARAFSHLATKLIEQETDKDTLIL 63 Query 63 DIGSAPVRHAHSNHRYHCICPMISAEDPDRLQRYAERLKKSD--ITDKNIASKAADLLEV 120 DIGSAP R S H+YHC+CPM SAEDP+RL YA++L + + D+ IA K DL V Sbjct 64 DIGSAPSRRMMSTHKYHCVCPMRSAEDPERLVCYAKKLAAASGKVLDREIAGKITDLQTV 123 Query 121 MSTPDAETPSLCMHTDATCRYFGSVAVYQDVYAVHAPTSIYHQALKGVRTIYWIGFDTTP 180 M+TPDAE+P+ C+HTD TCR VAVYQDVYAVHAPTS+YHQA+KGVRT YWIGFDTTP Sbjct 124 MATPDAESPTFCLHTDVTCRTAAEVAVYQDVYAVHAPTSLYHQAMKGVRTAYWIGFDTTP 183 Query 181 FMYKNMAGSYPTYNTNWADERVLEARNIGLGNSDLQESRLGKLSILRKKRLQPTNKIIFS 240 FM+ +AG+YPTY TNWADE+VL+ARNIGL + L E RLGKLSILRKK+L+P + ++FS Sbjct 184 FMFDALAGAYPTYATNWADEQVLQARNIGLCAASLTEGRLGKLSILRKKQLKPCDTVMFS 243 Query 241 VGSTIYTEDRSLLRSWHLPNVFHLKGKSNFTGRCGTIVSCEGYVIKKITISPGLYGKVEN 300 VGST+YTE R LLRSWHLP+VFHLKGK +FT RC TIVSCEGYV+KKIT+ PGLYGK Sbjct 244 VGSTLYTESRKLLRSWHLPSVFHLKGKQSFTCRCDTIVSCEGYVVKKITMCPGLYGKTVG 303 Query 301 LASTMHREGFLSCKVTDTLRGERVSFAVCTYVPATLCDQMTGILATDVSVDDAQKLLVGL 360 A T H EGFL CK TDT++GERVSF VCTYVP+T+CDQMTGILATDV+ +DAQKLLVGL Sbjct 304 YAVTYHAEGFLVCKTTDTVKGERVSFPVCTYVPSTICDQMTGILATDVTPEDAQKLLVGL 363 Query 361 NQRIVVNGRTQRNTNTMQNYLLPVVAQAFSRWAREHRADLDDEKELGVRERTLTMGCCWA 420 NQRIVVNGRTQRNTNTM+NYLLP+VA AFS+WARE++ADLDDEK LGVRER+LT C WA Sbjct 364 NQRIVVNGRTQRNTNTMKNYLLPIVAVAFSKWAREYKADLDDEKPLGVRERSLTCCCLWA 423 Query 421 FKTQKITSIYKKPGTQTIKKVPAVFDSFVIPRLTSHGLDMGFRRRLKLLLEPTVKPAPAI 480 FKT+K+ ++YKKP TQTI KVP+ F+SFVIP L S GL + R R+K+LL K I Sbjct 424 FKTRKMHTMYKKPDTQTIVKVPSEFNSFVIPSLWSTGLAIPVRSRIKMLLAKKTK-RELI 482 Query 481 TMADVEHLRGLQQEAEEVAAAEEIREALPPLLPEIEKET--VEAEVDLIMQEAGA 533 + D R +QE +E AE REALPPL+P ET V+ +V+ + AGA Sbjct 483 PVLDASSARDAEQEEKERLEAELTREALPPLVPIAPAETGVVDVDVEELEYHAGA 537 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Getah virus] Sequence ID: Q5Y389.3 Length: 2467 Range 1: 2 to 471 Score:715 bits(1845), Expect:0.0, Method:Compositional matrix adjust., Identities:329/470(70%), Positives:395/470(84%), Gaps:2/470(0%) Query 3 RIHVDLDADSPYVKSLQRTFPQFEIEARQVTDNDHANARAFSHVATKLIESEVDRDQVIL 62 ++ VD++ADSP++K+LQ+ FP FE+E++QVT NDHANARAFSH+ATKLIE EV IL Sbjct 2 KVTVDVEADSPFLKALQKAFPAFEVESQQVTPNDHANARAFSHLATKLIEQEVPTGVTIL 61 Query 63 DIGSAPVRHAHSNHRYHCICPMISAEDPDRLQRYAERLKKSD--ITDKNIASKAADLLEV 120 D+GSAP R S+H YHCICPM SAEDP+RL YA +L K+ + DKN++ K DL +V Sbjct 62 DVGSAPARRLMSDHTYHCICPMKSAEDPERLANYARKLAKASGTVLDKNVSGKITDLQDV 121 Query 121 MSTPDAETPSLCMHTDATCRYFGSVAVYQDVYAVHAPTSIYHQALKGVRTIYWIGFDTTP 180 M+TPD E+P+ C+HTD TCR VAVYQDVYAVHAPTS+YHQA+KGVRT YWIGFDTTP Sbjct 122 MATPDLESPTFCLHTDETCRTRAEVAVYQDVYAVHAPTSLYHQAIKGVRTAYWIGFDTTP 181 Query 181 FMYKNMAGSYPTYNTNWADERVLEARNIGLGNSDLQESRLGKLSILRKKRLQPTNKIIFS 240 FM++ +AG+YP Y+TNWADE+VL+ARNIGL + L E R GKLSI+RKK L+P+++++FS Sbjct 182 FMFEALAGAYPAYSTNWADEQVLQARNIGLCATGLSEGRRGKLSIMRKKCLRPSDRVMFS 241 Query 241 VGSTIYTEDRSLLRSWHLPNVFHLKGKSNFTGRCGTIVSCEGYVIKKITISPGLYGKVEN 300 VGST+YTE R LLRSWHLP+VFHLKGK++FT RC T+VSCEGYV+KKITISPG+YGK + Sbjct 242 VGSTLYTESRKLLRSWHLPSVFHLKGKNSFTCRCDTVVSCEGYVVKKITISPGIYGKTVD 301 Query 301 LASTMHREGFLSCKVTDTLRGERVSFAVCTYVPATLCDQMTGILATDVSVDDAQKLLVGL 360 A T H EGFL CK+TDT+RGERVSF VCTYVPAT+CDQMTGILATDV+ +DAQKLLVGL Sbjct 302 YAVTHHAEGFLMCKITDTVRGERVSFPVCTYVPATICDQMTGILATDVTPEDAQKLLVGL 361 Query 361 NQRIVVNGRTQRNTNTMQNYLLPVVAQAFSRWAREHRADLDDEKELGVRERTLTMGCCWA 420 NQRIVVNGRTQRNTNTM+NYLLPVVAQAFS+WARE RAD++DEK LG RERTLT C WA Sbjct 362 NQRIVVNGRTQRNTNTMKNYLLPVVAQAFSKWAREARADMEDEKPLGTRERTLTCCCLWA 421 Query 421 FKTQKITSIYKKPGTQTIKKVPAVFDSFVIPRLTSHGLDMGFRRRLKLLL 470 FK+ KI ++YK+P TQTI KVP+ FDSFVIP L S L MG R+R+KLLL Sbjct 422 FKSHKIHTMYKRPETQTIVKVPSTFDSFVIPSLWSSSLSMGIRQRIKLLL 471 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Sagiyama virus] Sequence ID: Q9JGL0.3 Length: 2467 Range 1: 2 to 471 Score:714 bits(1844), Expect:0.0, Method:Compositional matrix adjust., Identities:329/470(70%), Positives:395/470(84%), Gaps:2/470(0%) Query 3 RIHVDLDADSPYVKSLQRTFPQFEIEARQVTDNDHANARAFSHVATKLIESEVDRDQVIL 62 ++ VD++ADSP++K+LQ+ FP FE+E++QVT NDHANARAFSH+ATKLIE EV IL Sbjct 2 KVTVDVEADSPFLKALQKAFPAFEVESQQVTPNDHANARAFSHLATKLIEQEVPTGVTIL 61 Query 63 DIGSAPVRHAHSNHRYHCICPMISAEDPDRLQRYAERLKKSD--ITDKNIASKAADLLEV 120 D+GSAP R S+H YHCICPM SAEDP+RL YA +L K+ + DKN++ K DL +V Sbjct 62 DVGSAPARRLMSDHTYHCICPMKSAEDPERLANYARKLAKASGTVLDKNVSGKITDLQDV 121 Query 121 MSTPDAETPSLCMHTDATCRYFGSVAVYQDVYAVHAPTSIYHQALKGVRTIYWIGFDTTP 180 M+TPD E+P+ C+HTD TCR VAVYQDVYAVHAPTS+YHQA+KGVRT YWIGFDTTP Sbjct 122 MATPDLESPTFCLHTDETCRTRAEVAVYQDVYAVHAPTSLYHQAIKGVRTAYWIGFDTTP 181 Query 181 FMYKNMAGSYPTYNTNWADERVLEARNIGLGNSDLQESRLGKLSILRKKRLQPTNKIIFS 240 FM++ +AG+YP Y+TNWADE+VL+ARNIGL + L E R GKLSI+RKK L+P+++++FS Sbjct 182 FMFEALAGAYPAYSTNWADEQVLQARNIGLCATGLSEGRRGKLSIMRKKCLRPSDRVMFS 241 Query 241 VGSTIYTEDRSLLRSWHLPNVFHLKGKSNFTGRCGTIVSCEGYVIKKITISPGLYGKVEN 300 VGST+YTE R LLRSWHLP+VFHLKGK++FT RC T+VSCEGYV+KKITISPG+YGK + Sbjct 242 VGSTLYTESRKLLRSWHLPSVFHLKGKNSFTCRCDTVVSCEGYVVKKITISPGIYGKTVD 301 Query 301 LASTMHREGFLSCKVTDTLRGERVSFAVCTYVPATLCDQMTGILATDVSVDDAQKLLVGL 360 A T H EGFL CK+TDT+RGERVSF VCTYVPAT+CDQMTGILATDV+ +DAQKLLVGL Sbjct 302 YAVTHHAEGFLVCKITDTVRGERVSFPVCTYVPATICDQMTGILATDVTPEDAQKLLVGL 361 Query 361 NQRIVVNGRTQRNTNTMQNYLLPVVAQAFSRWAREHRADLDDEKELGVRERTLTMGCCWA 420 NQRIVVNGRTQRNTNTM+NYLLPVVAQAFS+WARE RAD++DEK LG RERTLT C WA Sbjct 362 NQRIVVNGRTQRNTNTMKNYLLPVVAQAFSKWAREARADMEDEKPLGTRERTLTCCCLWA 421 Query 421 FKTQKITSIYKKPGTQTIKKVPAVFDSFVIPRLTSHGLDMGFRRRLKLLL 470 FK+ KI ++YK+P TQTI KVP+ FDSFVIP L S L MG R+R+KLLL Sbjct 422 FKSHKIHTMYKRPETQTIVKVPSTFDSFVIPSLWSSSLSMGIRQRIKLLL 471 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Chikungunya virus strain S27-African prototype] Sequence ID: Q8JUX6.1 Length: 2474 Range 1: 1 to 535 Score:699 bits(1804), Expect:0.0, Method:Compositional matrix adjust., Identities:335/535(63%), Positives:414/535(77%), Gaps:2/535(0%) Query 1 MERIHVDLDADSPYVKSLQRTFPQFEIEARQVTDNDHANARAFSHVATKLIESEVDRDQV 60 M+ ++VD+DADS ++K+LQR +P FE+E RQVT NDHANARAFSH+A KLIE E+D D Sbjct 1 MDPVYVDIDADSAFLKALQRAYPMFEVEPRQVTPNDHANARAFSHLAIKLIEQEIDPDST 60 Query 61 ILDIGSAPVRHAHSNHRYHCICPMISAEDPDRLQRYAERLKKS--DITDKNIASKAADLL 118 ILDIGSAP R S+ +YHC+CPM SAEDP+RL YA +L + + D+NI+ K DL Sbjct 61 ILDIGSAPARRMMSDRKYHCVCPMRSAEDPERLANYARKLASAAGKVLDRNISGKIGDLQ 120 Query 119 EVMSTPDAETPSLCMHTDATCRYFGSVAVYQDVYAVHAPTSIYHQALKGVRTIYWIGFDT 178 VM+ PD ETP+ C+HTD +CR VA+YQDVYAVHAPTS+YHQA+KGVR YW+GFDT Sbjct 121 AVMAVPDTETPTFCLHTDVSCRQRADVAIYQDVYAVHAPTSLYHQAIKGVRLAYWVGFDT 180 Query 179 TPFMYKNMAGSYPTYNTNWADERVLEARNIGLGNSDLQESRLGKLSILRKKRLQPTNKII 238 TPFMY MAG+YP+Y+TNWADE+VL+A+NIGL ++DL E R GKLSI+R K+L+P ++++ Sbjct 181 TPFMYNAMAGAYPSYSTNWADEQVLKAKNIGLCSTDLTEGRRGKLSIMRGKKLEPCDRVL 240 Query 239 FSVGSTIYTEDRSLLRSWHLPNVFHLKGKSNFTGRCGTIVSCEGYVIKKITISPGLYGKV 298 FSVGST+Y E R LL+SWHLP+VFHLKGK +FT RC T+VSCEGYV+K+IT+SPGLYGK Sbjct 241 FSVGSTLYPESRKLLKSWHLPSVFHLKGKLSFTCRCDTVVSCEGYVVKRITMSPGLYGKT 300 Query 299 ENLASTMHREGFLSCKVTDTLRGERVSFAVCTYVPATLCDQMTGILATDVSVDDAQKLLV 358 A T H +GFL CK TDT+ GERVSF+VCTYVPAT+CDQMTGILAT+V+ +DAQKLLV Sbjct 301 TGYAVTHHADGFLMCKTTDTVDGERVSFSVCTYVPATICDQMTGILATEVTPEDAQKLLV 360 Query 359 GLNQRIVVNGRTQRNTNTMQNYLLPVVAQAFSRWAREHRADLDDEKELGVRERTLTMGCC 418 GLNQRIVVNGRTQRNTNTM+NY++PVVAQAFS+WA+E R D++DEK LGVRERTLT C Sbjct 361 GLNQRIVVNGRTQRNTNTMKNYMIPVVAQAFSKWAKECRKDMEDEKLLGVRERTLTCCCL 420 Query 419 WAFKTQKITSIYKKPGTQTIKKVPAVFDSFVIPRLTSHGLDMGFRRRLKLLLEPTVKPAP 478 WAFK QK ++YK+P TQ+I+KV A FDSFV+P L S GL + R R+K LL K Sbjct 421 WAFKKQKTHTVYKRPDTQSIQKVQAEFDSFVVPSLWSSGLSIPLRTRIKWLLSKVPKTDL 480 Query 479 AITMADVEHLRGLQQEAEEVAAAEEIREALPPLLPEIEKETVEAEVDLIMQEAGA 533 D + R ++EAEE AE EALPPL E VE +V+ + AGA Sbjct 481 TPYSGDAQEARDAEKEAEEEREAELTLEALPPLQAAQEDVQVEIDVEQLEDRAGA 535 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Ross river virus (STRAIN NB5092)] Sequence ID: P13887.2 Length: 2480 Range 1: 2 to 533 Score:697 bits(1799), Expect:0.0, Method:Compositional matrix adjust., Identities:342/534(64%), Positives:420/534(78%), Gaps:5/534(0%) Query 3 RIHVDLDADSPYVKSLQRTFPQFEIEARQVTDNDHANARAFSHVATKLIESEVDRDQVIL 62 ++ VD++ADSP++K+LQ+ FP FE+E++QVT NDHANARAFSH+ATKLIE EV + IL Sbjct 2 KVTVDVEADSPFLKALQKAFPAFEVESQQVTPNDHANARAFSHLATKLIEQEVPANITIL 61 Query 63 DIGSAPVRHAHSNHRYHCICPMISAEDPDRLQRYAERLKKS--DITDKNIASKAADLLEV 120 D+GSAP R S+H YHCICPM SAEDP+RL YA +L K+ ++ DKN++ K DL +V Sbjct 62 DVGSAPARRLMSDHSYHCICPMKSAEDPERLANYARKLAKTAGEVLDKNVSGKITDLQDV 121 Query 121 MSTPDAETPSLCMHTDATCRYFGSVAVYQDVYAVHAPTSIYHQALKGVRTIYWIGFDTTP 180 M+TPD E+P+ C+HTD TCR VAVYQDV HAPTS+YHQA+KGVRT+YWIGFDTTP Sbjct 122 MATPDLESPTFCLHTDETCRTRAEVAVYQDV-XXHAPTSLYHQAMKGVRTVYWIGFDTTP 180 Query 181 FMYKNMAGSYPTYNTNWADERVLEARNIGLGNSDLQESRLGKLSILRKKRLQPTNKIIFS 240 FM++ +AG+YPTY+TNWADE+VL+ARNIGL + L E GK+SI+RKKRL+P+++ +FS Sbjct 181 FMFEVVAGAYPTYSTNWADEQVLQARNIGLCATSLSEGHRGKISIMRKKRLRPSDRXMFS 240 Query 241 VGSTIYTEDRSLLRSWHLPNVFHLKGKSNFTGRCGTIVSCEGYVIKKITISPGLYGKVEN 300 VG T+Y E R LL+SWHLP+VFHLKGK++FT RC TIVSCEGYV+KKIT+SPG YGK Sbjct 241 VGXTLYIESRRLLKSWHLPSVFHLKGKNSFTCRCDTIVSCEGYVVKKITMSPGTYGKTVG 300 Query 301 LASTMHREGFLSCKVTDTLRGERVSFAVCTYVPATLCDQMTGILATDVSVDDAQKLLVGL 360 A T H EGFL CKVTDT+RGERVSF VCTYVPAT+CDQMTGILATDV+ +DAQKLLVGL Sbjct 301 YAVTHHAEGFLMCKVTDTVRGERVSFPVCTYVPATICDQMTGILATDVTPEDAQKLLVGL 360 Query 361 NQRIVVNGRTQRNTNTMQNYLLPVVAQAFSRWAREHRADLDDEKELGVRERTLTMGCCWA 420 NQRIVVNGRTQRNTNTM+NYLLPVVAQAFS+WARE +AD++DEK LG RERTLT C WA Sbjct 361 NQRIVVNGRTQRNTNTMKNYLLPVVAQAFSKWAREAKADMEDEKPLGTRERTLTCCCLWA 420 Query 421 FKTQKITSIYKKPGTQTIKKVPAVFDSFVIPRLTSHGLDMGFRRRLKLLLEPTVKPAPAI 480 FK K ++YK+P TQTI KVP+ FDSFVIP L S L +G R+R+KLLL P + Sbjct 421 FKNHKTHTMYKRPDTQTIVKVPSTFDSFVIPSLWSSSLSIGIRQRIKLLLGPKLSRDLPY 480 Query 481 TMADVEHLRGLQQEAEEVAAAEEIREALPPLLPEIEKETV-EAEVDLIMQEAGA 533 + D R ++EAEE AE REALPPL+ + V + +V+ + AGA Sbjct 481 S-GDRNEAREAEKEAEETKEAELTREALPPLVGSNCADDVDQVDVEELTYRAGA 533