RMSD of the bases (----- for WC bp, + for isolated bp, x for helix change) Strand I Strand II Helix 1 (0.010) ....>B:.902_:[..G]G-----C[..C]:.971_:B<.... (0.005) | 2 (0.012) ....>B:.903_:[..G]G-----C[..C]:.970_:B<.... (0.007) | 3 (0.011) ....>B:.904_:[..G]G-----C[..C]:.969_:B<.... (0.006) | 4 (0.012) ....>B:.905_:[..G]G-----C[..C]:.968_:B<.... (0.010) | 5 (0.010) ....>B:.906_:[..U]U-----A[..A]:.967_:B<.... (0.010) | 6 (0.013) ....>B:.907_:[..A]A-----U[..U]:.966_:B<.... (0.004) | 7 (0.006) ....>B:.949_:[..C]C-----G[..G]:.965_:B<.... (0.011) | 8 (0.008) ....>B:.950_:[..G]G-----C[..C]:.964_:B<.... (0.004) | 9 (0.005) ....>B:.951_:[..A]A-----U[..U]:.963_:B<.... (0.004) | 10 (0.014) ....>B:.952_:[..G]G-----C[..C]:.962_:B<.... (0.005) | 11 (0.006) ....>B:.953_:[..G]G-----C[..C]:.961_:B<.... (0.005) | 12 (0.002) ....>B:.954_:[..U]U-**--A[..A]:.958_:B<.... (0.008) | 13 (0.005) ....>B:.955_:[..U]U-**+-G[..G]:.918_:B<.... (0.009) x 14 (0.007) ....>B:.937_:[..A]A-**--U[..U]:.933_:B<.... (0.003) | 15 (0.004) ....>B:.938_:[..U]U-**--U[..U]:.932_:B<.... (0.006) | 16 (0.006) ....>B:.939_:[..U]U-----A[..A]:.931_:B<.... (0.006) | 17 (0.005) ....>B:.940_:[..C]C-*---G[..G]:.930_:B<.... (0.012) | 18 (0.005) ....>B:.941_:[..C]C-----G[..G]:.929_:B<.... (0.007) | 19 (0.012) ....>B:.942_:[..G]G-----C[..C]:.928_:B<.... (0.010) | 20 (0.007) ....>B:.943_:[..G]G-----C[..C]:.927_:B<.... (0.003) | 21 (0.008) ....>B:.944_:[..A]A-**--A[..A]:.926_:B<.... (0.015) | 22 (0.013) ....>B:.910_:[..G]G-----C[..C]:.925_:B<.... (0.006) | 23 (0.013) ....>B:.911_:[..C]C-----G[..G]:.924_:B<.... (0.006) | 24 (0.008) ....>B:.912_:[..C]C-----G[..G]:.923_:B<.... (0.007) | 25 (0.012) ....>B:.913_:[..A]A-**+-G[..G]:.946_:B<.... (0.008) | 26 (0.006) ....>B:.914_:[..A]A-**--A[..A]:.921_:B<.... (0.008) | 27 (0.015) ....>B:.915_:[..G]G-**+-U[..U]:.948_:B<.... (0.012) x 28 (0.029) ....>B:.919_:[..G]G-----C[..C]:.956_:B<.... (0.012) + Note: This structure contains 9[8] non-Watson-Crick base-pairs. Detailed H-bond information: atom-name pair and length [ O N] 1 G-----C [3] O6 - N4 2.58 N1 - N3 2.89 N2 - O2 3.12 2 G-----C [3] O6 - N4 2.58 N1 - N3 2.55 N2 - O2 2.48 3 G-----C [3] O6 - N4 2.63 N1 - N3 2.60 N2 - O2 2.53 4 G-----C [3] O6 - N4 2.65 N1 - N3 2.72 N2 - O2 2.74 5 U-----A [2] N3 - N1 2.58 O4 - N6 2.60 6 A-----U [2] N6 - O4 2.41 N1 - N3 2.70 7 C-----G [3] O2 - N2 2.60 N3 - N1 2.71 N4 - O6 2.76 8 G-----C [3] O6 - N4 2.69 N1 - N3 2.58 N2 - O2 2.50 9 A-----U [2] N6 - O4 2.69 N1 - N3 2.44 10 G-----C [3] O6 - N4 2.79 N1 - N3 2.67 N2 - O2 2.55 11 G-----C [3] O6 - N4 3.04 N1 - N3 2.95 N2 - O2 2.74 12 U-**--A [2] O2 - N6 2.57 N3 - N7 3.03 13 U-**+-G [3] O4'* O6 3.33 N1 * N1 3.97 O2 - N2 2.38 14 A-**--U [1] N6 - O2 2.80 15 U-**--U [1] O4 - N3 3.15 16 U-----A [2] N3 - N1 2.86 O4 - N6 3.28 17 C-*---G [2] O2 - N1 2.68 N3 * O6 3.20 18 C-----G [3] O2 - N2 3.11 N3 - N1 3.00 N4 - O6 2.76 19 G-----C [3] O6 - N4 2.74 N1 - N3 2.59 N2 - O2 2.35 20 G-----C [3] O6 - N4 2.77 N1 - N3 2.86 N2 - O2 2.84 21 A-**--A [1] N1 - N6 2.75 22 G-----C [3] O6 - N4 2.79 N1 - N3 2.79 N2 - O2 2.71 23 C-----G [3] O2 - N2 2.84 N3 - N1 2.82 N4 - O6 2.80 24 C-----G [3] O2 - N2 2.62 N3 - N1 2.90 N4 - O6 3.05 25 A-**+-G [1] N1 - N2 2.92 26 A-**--A [2] N6 - N3 3.03 N1 - O2' 2.90 27 G-**+-U [2] O6 - N3 2.78 N1 - O4 2.80 28 G-----C [3] O6 - N4 3.02 N1 - N3 2.61 N2 - O2 2.27