RID: AA699JZZ016 Job Title:sp|P13888|1-538 Program: BLASTP Query: sp|P13888|1-538 ID: lcl|Query_54212(amino acid) Length: 538 Database: swissprot Non-redundant UniProtKB/SwissProt sequences Sequences producing significant alignments: Scientific Common Max Total Query E Per. Acc. Description Name Name Taxid Score Score cover Value Ident Len Accession RecName: Full=Polyprotein nsP1234; Short=P1234; AltName:... Ross river v... NA 11032 1107 1107 100% 0.0 100.00 1149 P13888.2 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Ross river v... NA 11031 1087 1087 100% 0.0 98.33 2480 P13887.2 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Getah virus NA 59300 734 734 100% 0.0 73.19 2467 Q5Y389.3 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Sagiyama virus NA 59303 729 729 100% 0.0 72.64 2467 Q9JGL0.3 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Semliki Fore... NA 11033 518 518 82% 2e-165 58.30 2432 P08411.2 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Chikungunya ... NA 371094 512 512 70% 5e-163 62.44 2474 Q8JUX6.1 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Chikungunya ... NA 371095 504 504 70% 3e-160 61.22 2474 Q5XXP4.1 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... O'nyong-nyon... NA 374989 501 501 60% 3e-159 71.56 2513 O90368.1 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Igbo Ora virus NA 79899 501 501 60% 3e-159 71.56 2513 O90370.1 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... O'nyong-nyon... NA 11028 499 499 60% 1e-158 71.25 2514 P13886.2 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Mayaro virus... NA 374990 488 488 100% 7e-155 52.01 2437 Q8QZ73.3 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Venezuelan e... NA 36384 426 426 83% 4e-133 44.61 2499 Q9WJC7.3 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Western equi... NA 11039 422 422 60% 1e-131 61.42 2467 P13896.3 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Venezuelan e... NA 376610 421 421 68% 2e-131 55.04 2497 Q8V294.3 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Venezuelan e... NA 36382 420 420 90% 5e-131 44.02 2485 P36327.3 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Eastern equi... NA 374597 420 420 60% 6e-131 61.54 2474 Q306W8.3 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Eastern equi... NA 374596 420 420 60% 8e-131 61.23 2471 Q306W6.3 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Barmah Fores... NA 11020 420 420 70% 8e-131 54.20 2411 P87515.3 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Eastern equi... NA 374598 419 419 86% 9e-131 44.60 2494 Q4QXJ8.3 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Venezuelan e... NA 11038 416 416 90% 2e-129 44.22 2493 P27282.3 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Venezuelan e... NA 36385 412 412 60% 3e-128 58.48 2493 P36328.2 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Ockelbo virus NA 31699 397 397 70% 4e-123 49.77 2515 P27283.2 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Sindbis virus NA 11034 393 393 70% 2e-121 49.42 2513 P03317.2 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Aura virus NA 44158 387 387 60% 1e-119 58.59 2499 Q86924.3 RecName: Full=Polyprotein nsP1234; Short=P1234; AltName:... Middelburg v... NA 11023 363 363 70% 2e-115 52.62 995 P03318.2 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Salmon pancr... NA 84589 228 228 56% 1e-64 39.81 2601 Q8JJX1.1 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Sleeping dis... NA 78540 226 226 56% 4e-64 40.12 2593 Q8QL53.1 RecName: Full=Non-structural polyprotein p200; Short=p200;... Rubella viru... NA 376267 46.6 46.6 18% 2e-05 34.86 2116 Q8BCR0.1 RecName: Full=Non-structural polyprotein p200; Short=p200;... Rubella viru... NA 376265 46.6 46.6 18% 2e-05 34.86 2116 Q99IE7.1 RecName: Full=Non-structural polyprotein p200; Short=p200;... Rubella viru... NA 376264 46.2 46.2 18% 3e-05 34.86 2116 Q99IE5.1 RecName: Full=Non-structural polyprotein p200; Short=p200;... Rubella viru... NA 376266 45.8 45.8 18% 4e-05 35.51 2116 Q9J6K9.2 RecName: Full=Non-structural polyprotein pORF1; Includes:... Hepatitis E ... NA 31768 44.3 44.3 17% 1e-04 29.81 1691 Q03495.1 RecName: Full=Non-structural polyprotein p200; Short=p200;... Rubella viru... NA 11045 43.9 43.9 18% 2e-04 33.94 2116 P13889.5 RecName: Full=Non-structural polyprotein pORF1; Includes:... Hepatitis E ... NA 33774 43.5 43.5 17% 2e-04 30.93 1693 P33424.2 RecName: Full=Non-structural polyprotein pORF1; Includes:... Hepatitis E ... NA 31767 43.5 43.5 17% 2e-04 30.93 1693 P29324.1 RecName: Full=Non-structural polyprotein p200; Short=p200;... Rubella viru... NA 376262 43.1 43.1 18% 2e-04 34.58 2116 Q6X2U4.1 RecName: Full=Non-structural polyprotein p200; Short=p200;... Rubella viru... NA 376263 43.1 43.1 18% 3e-04 33.03 2116 Q6X2U2.1 RecName: Full=Non-structural polyprotein pORF1; Includes:... Hepatitis E ... NA 652674 42.7 42.7 17% 3e-04 30.93 1693 Q81862.1 RecName: Full=Replicase polyprotein 1a; Short=pp1a; AltName:... Berne virus NA 11156 42.0 42.0 23% 6e-04 25.18 4569 P0C6F3.1 RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName:... Berne virus NA 11156 42.0 42.0 23% 6e-04 25.18 6857 P0C6V7.1 RecName: Full=Non-structural polyprotein pORF1; Includes:... Avian hepati... NA 516993 42.0 42.0 18% 6e-04 29.13 1531 Q6QLN1.1 RecName: Full=Non-structural polyprotein pORF1; Includes:... Hepatitis E ... NA 512346 41.6 41.6 17% 8e-04 29.90 1693 Q9WC28.1 RecName: Full=Non-structural polyprotein p200; Short=p200;... Rubella viru... NA 11043 41.2 41.2 18% 0.001 34.86 2116 Q86500.2 RecName: Full=Non-structural polyprotein pORF1; Includes:... Hepatitis E ... NA 509627 40.8 40.8 17% 0.001 27.88 1707 Q9IVZ9.1 RecName: Full=Non-structural polyprotein pORF1; Includes:... Hepatitis E ... NA 31769 40.4 40.4 17% 0.002 29.90 1693 Q04610.1 RecName: Full=Non-structural polyprotein p200; Short=p200;... Rubella viru... NA 11044 40.0 40.0 18% 0.003 34.86 2116 O40955.1 RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName:... Porcine epid... NA 229032 38.1 38.1 18% 0.010 29.63 6781 P0C6Y4.1 RecName: Full=Replicase polyprotein 1a; Short=pp1a; AltName:... Porcine epid... NA 229032 37.7 37.7 18% 0.013 29.63 4117 P0C6V6.1 RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName:... Betacoronavi... NA 1263720 37.7 37.7 18% 0.014 30.97 7078 K9N7C7.1 RecName: Full=Replicase polyprotein 1a; Short=pp1a; AltName:... Betacoronavi... NA 1263720 37.7 37.7 18% 0.014 30.97 4391 K9N638.1 Alignments: >RecName: Full=Polyprotein nsP1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Ross river virus (STRAIN T48)] Sequence ID: P13888.2 Length: 1149 Range 1: 1 to 538 Score:1107 bits(2864), Expect:0.0, Method:Compositional matrix adjust., Identities:538/538(100%), Positives:538/538(100%), Gaps:0/538(0%) Query 1 APSYRVRRTDISGHAEEAVVNAANAKGTVGDGVCRAVARKWPDSFKGAATPVGTAKLVQA 60 APSYRVRRTDISGHAEEAVVNAANAKGTVGDGVCRAVARKWPDSFKGAATPVGTAKLVQA Sbjct 1 APSYRVRRTDISGHAEEAVVNAANAKGTVGDGVCRAVARKWPDSFKGAATPVGTAKLVQA 60 Query 61 NGMNVIHAVGPNFSTVTEAEGDRELAAAYRAVAGIINASNIKSVAIPLLSTGVFSGGKDR 120 NGMNVIHAVGPNFSTVTEAEGDRELAAAYRAVAGIINASNIKSVAIPLLSTGVFSGGKDR Sbjct 61 NGMNVIHAVGPNFSTVTEAEGDRELAAAYRAVAGIINASNIKSVAIPLLSTGVFSGGKDR 120 Query 121 VMQSLNHLFTAMDTTDADVVIYCRDKAWEKKIQEAIDRRTAVELVSEDISLESDLIRVHP 180 VMQSLNHLFTAMDTTDADVVIYCRDKAWEKKIQEAIDRRTAVELVSEDISLESDLIRVHP Sbjct 121 VMQSLNHLFTAMDTTDADVVIYCRDKAWEKKIQEAIDRRTAVELVSEDISLESDLIRVHP 180 Query 181 DSCLVGRKGYSITDGKLHSYLEGTRFHQTAVDMAEISTLWPKLQDANEQICLYALGESMD 240 DSCLVGRKGYSITDGKLHSYLEGTRFHQTAVDMAEISTLWPKLQDANEQICLYALGESMD Sbjct 181 DSCLVGRKGYSITDGKLHSYLEGTRFHQTAVDMAEISTLWPKLQDANEQICLYALGESMD 240 Query 241 SIRTKCPVEDADSSTPPKTVPCLCRYAMTAERVARLRMNNTKAIIVCSSFPLPKYRIEGV 300 SIRTKCPVEDADSSTPPKTVPCLCRYAMTAERVARLRMNNTKAIIVCSSFPLPKYRIEGV Sbjct 241 SIRTKCPVEDADSSTPPKTVPCLCRYAMTAERVARLRMNNTKAIIVCSSFPLPKYRIEGV 300 Query 301 QKVKCDRVLIFDQTVPSLVSPRKYIPAAASTHADTVSLDSTVSTGSAWSFPSEATYETME 360 QKVKCDRVLIFDQTVPSLVSPRKYIPAAASTHADTVSLDSTVSTGSAWSFPSEATYETME Sbjct 301 QKVKCDRVLIFDQTVPSLVSPRKYIPAAASTHADTVSLDSTVSTGSAWSFPSEATYETME 360 Query 361 VVAEVHHSEPPVPPPRRRRAQVTMHHQELLEVSDMHTPIAARVEIPVYDTAVVVERVAIP 420 VVAEVHHSEPPVPPPRRRRAQVTMHHQELLEVSDMHTPIAARVEIPVYDTAVVVERVAIP Sbjct 361 VVAEVHHSEPPVPPPRRRRAQVTMHHQELLEVSDMHTPIAARVEIPVYDTAVVVERVAIP 420 Query 421 CTSEYAKPIPAPRAARVVPVPAPRIQRASTYRVSPTPTPRVLRASVCSVTTSAGVEFPWA 480 CTSEYAKPIPAPRAARVVPVPAPRIQRASTYRVSPTPTPRVLRASVCSVTTSAGVEFPWA Sbjct 421 CTSEYAKPIPAPRAARVVPVPAPRIQRASTYRVSPTPTPRVLRASVCSVTTSAGVEFPWA 480 Query 481 PEDLEVLTEPVHCKMREPVELPWEPEDVDIQFGDFETSDKIQFGDIDFDQFXLGRAGA 538 PEDLEVLTEPVHCKMREPVELPWEPEDVDIQFGDFETSDKIQFGDIDFDQFXLGRAGA Sbjct 481 PEDLEVLTEPVHCKMREPVELPWEPEDVDIQFGDFETSDKIQFGDIDFDQFXLGRAGA 538 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Ross river virus (STRAIN NB5092)] Sequence ID: P13887.2 Length: 2480 Range 1: 1332 to 1869 Score:1087 bits(2812), Expect:0.0, Method:Compositional matrix adjust., Identities:529/538(98%), Positives:530/538(98%), Gaps:0/538(0%) Query 1 APSYRVRRTDISGHAEEAVVNAANAKGTVGDGVCRAVARKWPDSFKGAATPVGTAKLVQA 60 APSYRVRRTDISGHAEEAVVNAANAKGTVG GVCRAVARKWPDSFKGAATPVGTAKLVQA Sbjct 1332 APSYRVRRTDISGHAEEAVVNAANAKGTVGVGVCRAVARKWPDSFKGAATPVGTAKLVQA 1391 Query 61 NGMNVIHAVGPNFSTVTEAEGDRELAAAYRAVAGIINASNIKSVAIPLLSTGVFSGGKDR 120 NGMNVIHAVGPNFSTVTEAEGDRELAAAYRAVAGIINASNIKSVAIPLLSTGVFSGGKDR Sbjct 1392 NGMNVIHAVGPNFSTVTEAEGDRELAAAYRAVAGIINASNIKSVAIPLLSTGVFSGGKDR 1451 Query 121 VMQSLNHLFTAMDTTDADVVIYCRDKAWEKKIQEAIDRRTAVELVSEDISLESDLIRVHP 180 VMQSLNHLFTAMDTTDADVVIYCRDKAWEKKIQEAIDRRTAVELVSEDISLESDLIRVHP Sbjct 1452 VMQSLNHLFTAMDTTDADVVIYCRDKAWEKKIQEAIDRRTAVELVSEDISLESDLIRVHP 1511 Query 181 DSCLVGRKGYSITDGKLHSYLEGTRFHQTAVDMAEISTLWPKLQDANEQICLYALGESMD 240 DSCLVGRKGYSITDGKLHSYLEGTRFHQTAVDMAEISTLWPKLQDANEQICLYALGESMD Sbjct 1512 DSCLVGRKGYSITDGKLHSYLEGTRFHQTAVDMAEISTLWPKLQDANEQICLYALGESMD 1571 Query 241 SIRTKCPVEDADSSTPPKTVPCLCRYAMTAERVARLRMNNTKAIIVCSSFPLPKYRIEGV 300 SIRTKCPVEDADSSTPPKTVPCLCRYAMTAERVARLRMNNTKAIIVCSSFPLPKYRIEGV Sbjct 1572 SIRTKCPVEDADSSTPPKTVPCLCRYAMTAERVARLRMNNTKAIIVCSSFPLPKYRIEGV 1631 Query 301 QKVKCDRVLIFDQTVPSLVSPRKYIPAAASTHADTVSLDSTVSTGSAWSFPSEATYETME 360 QKVKCDRVLIFDQTVPSLVSPRKYIPAAAS HADTVSLDSTVSTGSAWSFPSEATYETME Sbjct 1632 QKVKCDRVLIFDQTVPSLVSPRKYIPAAASMHADTVSLDSTVSTGSAWSFPSEATYETME 1691 Query 361 VVAEVHHSEPPVPPPRRRRAQVTMHHQELLEVSDMHTPIAARVEIPVYDTAVVVERVAIP 420 VVAEVHHSEPPVPPPRRRRAQVTMHHQELLEVSDMHTPIAARVEIPVYDTAVV ERVAIP Sbjct 1692 VVAEVHHSEPPVPPPRRRRAQVTMHHQELLEVSDMHTPIAARVEIPVYDTAVVAERVAIP 1751 Query 421 CTSEYAKPIPAPRAARVVPVPAPRIQRASTYRVSPTPTPRVLRASVCSVTTSAGVEFPWA 480 CTSEYA PIP PRA RVVPVPAPRIQRASTYRVSPTPTPRVLRASVCSVTTSAGVEFPWA Sbjct 1752 CTSEYATPIPTPRAVRVVPVPAPRIQRASTYRVSPTPTPRVLRASVCSVTTSAGVEFPWA 1811 Query 481 PEDLEVLTEPVHCKMREPVELPWEPEDVDIQFGDFETSDKIQFGDIDFDQFXLGRAGA 538 PEDLEVLTEPVHC+MREPVELPWEPEDVDIQFGDFET DKIQFGDIDFDQFXL RAGA Sbjct 1812 PEDLEVLTEPVHCEMREPVELPWEPEDVDIQFGDFETPDKIQFGDIDFDQFXLSRAGA 1869 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Getah virus] Sequence ID: Q5Y389.3 Length: 2467 Range 1: 1333 to 1856 Score:734 bits(1894), Expect:0.0, Method:Compositional matrix adjust., Identities:404/552(73%), Positives:441/552(79%), Gaps:42/552(7%) Query 1 APSYRVRRTDISGHAEEAVVNAANAKGTVGDGVCRAVARKWPDSFKGAATPVGTAKLVQA 60 APSYRVRR DISGH+EEAVVNAANAKGTV DGVCRAVA+KWP SFKGAATPVGTAK+++A Sbjct 1333 APSYRVRRADISGHSEEAVVNAANAKGTVSDGVCRAVAKKWPSSFKGAATPVGTAKMIRA 1392 Query 61 NGMNVIHAVGPNFSTVTEAEGDRELAAAYRAVAGIINASNIKSVAIPLLSTGVFSGGKDR 120 +GM VIHAVGPNFSTVTEAEGDRELAAAYRAVA II+ +NIKSVA+PLLSTG FSGGKDR Sbjct 1393 DGMTVIHAVGPNFSTVTEAEGDRELAAAYRAVASIISTNNIKSVAVPLLSTGTFSGGKDR 1452 Query 121 VMQSLNHLFTAMDTTDADVVIYCRDKAWEKKIQEAIDRRTAVELVSEDISLESDLIRVHP 180 VMQSLNHLFTA+D TDADVVIYCRDK WEKKIQEAIDRRTA+ELVSED++LE+DL+RVHP Sbjct 1453 VMQSLNHLFTALDATDADVVIYCRDKNWEKKIQEAIDRRTAIELVSEDVTLETDLVRVHP 1512 Query 181 DSCLVGRKGYSITDGKLHSYLEGTRFHQTAVDMAEISTLWPKLQDANEQICLYALGESMD 240 DSCLVGR GYS TDGKL+SYLEGTRFHQTAVDMAEISTLWP+LQDANEQICLYALGE+MD Sbjct 1513 DSCLVGRNGYSATDGKLYSYLEGTRFHQTAVDMAEISTLWPRLQDANEQICLYALGETMD 1572 Query 241 SIRTKCPVEDADSSTPPKTVPCLCRYAMTAERVARLRMNNTKAIIVCSSFPLPKYRIEGV 300 SIRTKCPVEDADSSTPPKTVPCLCRYAMTAERVARLRMNNTK IIVCSSFPLPKYRIEGV Sbjct 1573 SIRTKCPVEDADSSTPPKTVPCLCRYAMTAERVARLRMNNTKNIIVCSSFPLPKYRIEGV 1632 Query 301 QKVKCDRVLIFDQTVPSLVSPRKYIPAAASTHADTVSLDSTVSTGSAWSFPSEATYETME 360 QKVKCDRVLIFDQTVPSLVSPRKYI D VSL ST STGSAWSFPSE TYETME Sbjct 1633 QKVKCDRVLIFDQTVPSLVSPRKYIQQPPE-QLDNVSLTSTTSTGSAWSFPSETTYETME 1691 Query 361 VVAEVHHSEPPVPPPRRRRAQVTMHHQELLEVSDMHTPIAARVEIPVYDTAVVVERVAIP 420 VVAEV H+EPP+PPPRRRRA V Q+L ++ + + EI +V+ERVA Sbjct 1692 VVAEV-HTEPPIPPPRRRRAAVAQLRQDLEVTEEIEPYVTQQAEI------MVMERVAT- 1743 Query 421 CTSEYAKPIPAPRAARVVPVPAPRIQRAST----YRVSPTPTPRVLRASVCSVTTSAGVE 476 T A P+PA RA +PVPAPR+++ +T +P P PR R + S Sbjct 1744 -TDIRAIPVPARRAI-TMPVPAPRVRKVATEPPLEPEAPIPAPRKRRTTSTSP------- 1794 Query 477 FPWAPEDLEVLTEPVHCKMREPVELPWEPEDVDIQFGDFE----------TSDKIQFGDI 526 P PED R PVELPWEPED+DIQFGD E S IQFGDI Sbjct 1795 -PHNPEDF---------VPRVPVELPWEPEDLDIQFGDLEPRRRNTRDRDVSTGIQFGDI 1844 Query 527 DFDQFXLGRAGA 538 DF+Q XLGRAGA Sbjct 1845 DFNQSXLGRAGA 1856 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Sagiyama virus] Sequence ID: Q9JGL0.3 Length: 2467 Range 1: 1333 to 1856 Score:729 bits(1882), Expect:0.0, Method:Compositional matrix adjust., Identities:401/552(73%), Positives:438/552(79%), Gaps:42/552(7%) Query 1 APSYRVRRTDISGHAEEAVVNAANAKGTVGDGVCRAVARKWPDSFKGAATPVGTAKLVQA 60 APSYRVRR DISGH EEAVVNAANAKGTV DGVCRAVA+KWP SFKGAATPVGTAK+++A Sbjct 1333 APSYRVRRADISGHGEEAVVNAANAKGTVSDGVCRAVAKKWPSSFKGAATPVGTAKMIRA 1392 Query 61 NGMNVIHAVGPNFSTVTEAEGDRELAAAYRAVAGIINASNIKSVAIPLLSTGVFSGGKDR 120 +GM VIHAVGPNFSTVTEAEGDRELAAAYRAVA II+ +NIKSVA+PLLSTG FSGGKDR Sbjct 1393 DGMTVIHAVGPNFSTVTEAEGDRELAAAYRAVASIISTNNIKSVAVPLLSTGTFSGGKDR 1452 Query 121 VMQSLNHLFTAMDTTDADVVIYCRDKAWEKKIQEAIDRRTAVELVSEDISLESDLIRVHP 180 VMQSLNHLFTA+D TDADVVIYCRDK WEKKIQEAIDRRTA+ELVSED++LE+DL+RVHP Sbjct 1453 VMQSLNHLFTALDATDADVVIYCRDKNWEKKIQEAIDRRTAIELVSEDVTLETDLVRVHP 1512 Query 181 DSCLVGRKGYSITDGKLHSYLEGTRFHQTAVDMAEISTLWPKLQDANEQICLYALGESMD 240 DSCLVGR GYS TDGKL+SYLEGTRFHQTAVDMAEISTLWP+LQDANEQICLYALGE+MD Sbjct 1513 DSCLVGRNGYSATDGKLYSYLEGTRFHQTAVDMAEISTLWPRLQDANEQICLYALGETMD 1572 Query 241 SIRTKCPVEDADSSTPPKTVPCLCRYAMTAERVARLRMNNTKAIIVCSSFPLPKYRIEGV 300 SIRTKCPVEDADSSTPPKTVPCLCRYAMTAERVARLRMNNTK IIVCSSFPLPKYRIEGV Sbjct 1573 SIRTKCPVEDADSSTPPKTVPCLCRYAMTAERVARLRMNNTKNIIVCSSFPLPKYRIEGV 1632 Query 301 QKVKCDRVLIFDQTVPSLVSPRKYIPAAASTHADTVSLDSTVSTGSAWSFPSEATYETME 360 QKVKCDRVLIFDQTVPSLVSPRKYI D VSL ST STGSAWS PSE TYETME Sbjct 1633 QKVKCDRVLIFDQTVPSLVSPRKYIQQPPE-QLDNVSLTSTTSTGSAWSLPSETTYETME 1691 Query 361 VVAEVHHSEPPVPPPRRRRAQVTMHHQELLEVSDMHTPIAARVEIPVYDTAVVVERVAIP 420 VVAEV H+EPP+PPPRRRRA V Q+L ++ + + EI +V+ERVA Sbjct 1692 VVAEV-HTEPPIPPPRRRRAAVAQLRQDLEVTEEIEPYVIQQAEI------MVMERVAT- 1743 Query 421 CTSEYAKPIPAPRAARVVPVPAPRIQRASTYRVS----PTPTPRVLRASVCSVTTSAGVE 476 T A P+PA RA +PVPAPR+++ +T S P P PR R + + + G Sbjct 1744 -TDIRAIPVPARRAI-TMPVPAPRVRKVATEPPSEPEAPIPAPRKRRTTSTTPPHNPGDF 1801 Query 477 FPWAPEDLEVLTEPVHCKMREPVELPWEPEDVDIQFGDFE----------TSDKIQFGDI 526 P R PVELPWEPED+DIQFGD E S IQFGDI Sbjct 1802 VP-----------------RVPVELPWEPEDLDIQFGDLEPRRRNTRDWDVSTGIQFGDI 1844 Query 527 DFDQFXLGRAGA 538 DF+Q XLGRAGA Sbjct 1845 DFNQSXLGRAGA 1856 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Semliki Forest virus] Sequence ID: P08411.2 Length: 2432 Range 1: 1337 to 1776 Score:518 bits(1335), Expect:2e-165, Method:Compositional matrix adjust., Identities:281/482(58%), Positives:334/482(69%), Gaps:80/482(16%) Query 1 APSYRVRRTDISGHAEEAVVNAANAKGTVGDGVCRAVARKWPDSFKGAATPVGTAKLVQA 60 APSYRV+R DI+ E AVVNAANA+GTVGDGVCRAVA+KWP +FKGAATPVGT K V Sbjct 1337 APSYRVKRADIATCTEAAVVNAANARGTVGDGVCRAVAKKWPSAFKGAATPVGTIKTVMC 1396 Query 61 NGMNVIHAVGPNFSTVTEAEGDRELAAAYRAVAGIINASNIKSVAIPLLSTGVFSGGKDR 120 VIHAV PNFS TEAEGDRELAA YRAVA +N ++ SVAIPLLSTGVFSGG+DR Sbjct 1397 GSYPVIHAVAPNFSATTEAEGDRELAAVYRAVAAEVNRLSLSSVAIPLLSTGVFSGGRDR 1456 Query 121 VMQSLNHLFTAMDTTDADVVIYCRDKAWEKKIQEAIDRRTAVELVSEDISLESDLIRVHP 180 + QSLNHLFTAMD TDADV IYCRDK+WEKKIQEAID RTAVEL+++D+ L +DL+RVHP Sbjct 1457 LQQSLNHLFTAMDATDADVTIYCRDKSWEKKIQEAIDMRTAVELLNDDVELTTDLVRVHP 1516 Query 181 DSCLVGRKGYSITDGKLHSYLEGTRFHQTAVDMAEISTLWPKLQDANEQICLYALGESMD 240 DS LVGRKGYS TDG L+SY EGT+F+Q A+DMAEI TLWP+LQ+ANEQICLYALGE+MD Sbjct 1517 DSSLVGRKGYSTTDGSLYSYFEGTKFNQAAIDMAEILTLWPRLQEANEQICLYALGETMD 1576 Query 241 SIRTKCPVEDADSSTPPKTVPCLCRYAMTAERVARLRMNNTKAIIVCSSFPLPKYRIEGV 300 +IR+KCPV D+DSSTPP+TVPCLCRYAMTAER+ARLR + K+++VCSSFPLPKY ++GV Sbjct 1577 NIRSKCPVNDSDSSTPPRTVPCLCRYAMTAERIARLRSHQVKSMVVCSSFPLPKYHVDGV 1636 Query 301 QKVKCDRVLIFDQTVPSLVSPRKYIPAAASTHADTV--------SLDSTVSTGSAWSFPS 352 QKVKC++ L+FD TVPS+VSPRKY A+ + H+D + DS+ + S PS Sbjct 1637 QKVKCEKGLLFDPTVPSVVSPRKY-AASTTDHSDRSLRGFDLDWTTDSSSTASDTMSLPS 1695 Query 353 ------EATYETME---VVAEVH-------------HSEP--------PVPPPRRRRAQV 382 ++ YE M V A+VH H EP P+PPPR +RA Sbjct 1696 LQSCDIDSIYEPMAPIVVTADVHPEPAGIADLAADVHPEPADHVDLENPIPPPRPKRA-- 1753 Query 383 TMHHQELLEVSDMHTPIAARVEIPVYDTAVVVERVAIPCTSEYAKPIPAPRAARVVPVPA 442 A + R A +P+PAPR P PA Sbjct 1754 ----------------------------AYLASRAA-------ERPVPAPRK----PTPA 1774 Query 443 PR 444 PR Sbjct 1775 PR 1776 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Chikungunya virus strain S27-African prototype] Sequence ID: Q8JUX6.1 Length: 2474 Range 1: 1334 to 1741 Score:512 bits(1318), Expect:5e-163, Method:Compositional matrix adjust., Identities:256/410(62%), Positives:303/410(73%), Gaps:31/410(7%) Query 1 APSYRVRRTDISGHAEEAVVNAANAKGTVGDGVCRAVARKWPDSFKGAATPVGTAKLVQA 60 APSYRV+R DI+ + EE VVNAAN +G GDGVC+AV +KWP+SFK +ATPVGTAK V Sbjct 1334 APSYRVKRMDIAKNDEECVVNAANPRGLPGDGVCKAVYKKWPESFKNSATPVGTAKTVMC 1393 Query 61 NGMNVIHAVGPNFSTVTEAEGDRELAAAYRAVAGIINASNIKSVAIPLLSTGVFSGGKDR 120 VIHAVGPNFS +E+EGDRELAAAYR VA + + SVAIPLLSTGV+SGGKDR Sbjct 1394 GTYPVIHAVGPNFSNYSESEGDRELAAAYREVAKEVTRLGVNSVAIPLLSTGVYSGGKDR 1453 Query 121 VMQSLNHLFTAMDTTDADVVIYCRDKAWEKKIQEAIDRRTAVELVSEDISLESDLIRVHP 180 + QSLNHLFTAMD+TDADVVIYCRDK WEKKI EAI RT VEL+ E IS++ D++RVHP Sbjct 1454 LTQSLNHLFTAMDSTDADVVIYCRDKEWEKKISEAIQMRTQVELLDEHISIDCDVVRVHP 1513 Query 181 DSCLVGRKGYSITDGKLHSYLEGTRFHQTAVDMAEISTLWPKLQDANEQICLYALGESMD 240 DS L GRKGYS T+G L+SYLEGTRFHQTAVDMAEI T+WPK +ANEQ+CLYALGES++ Sbjct 1514 DSSLAGRKGYSTTEGALYSYLEGTRFHQTAVDMAEIYTMWPKQTEANEQVCLYALGESIE 1573 Query 241 SIRTKCPVEDADSSTPPKTVPCLCRYAMTAERVARLRMNNTKAIIVCSSFPLPKYRIEGV 300 SIR KCPV+DAD+S+PPKTVPCLCRYAMT ERV RLRMN+ +IIVCSSFPLPKY+IEGV Sbjct 1574 SIRQKCPVDDADASSPPKTVPCLCRYAMTPERVTRLRMNHVTSIIVCSSFPLPKYKIEGV 1633 Query 301 QKVKCDRVLIFDQTVPSLVSPRKYIPAAAS----------TH------------------ 332 QKVKC +V++FD VPS VSPR+Y P+ S TH Sbjct 1634 QKVKCSKVMLFDHNVPSRVSPREYRPSQESVQEASTTTSLTHSQFDLSVDGKILPVPSDL 1693 Query 333 -ADTVSLDSTVSTGSAWSFPSEATYETMEVVAEVHHSEPPVPPPRRRRAQ 381 AD +L+ + G+ + PS + V++ S PV PPRRRR + Sbjct 1694 DADAPALEPALDDGAIHTLPSATG--NLAAVSDWVMSTVPVAPPRRRRGR 1741 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Chikungunya virus strain Senegal 37997] Sequence ID: Q5XXP4.1 Length: 2474 Range 1: 1334 to 1741 Score:504 bits(1297), Expect:3e-160, Method:Compositional matrix adjust., Identities:251/410(61%), Positives:299/410(72%), Gaps:31/410(7%) Query 1 APSYRVRRTDISGHAEEAVVNAANAKGTVGDGVCRAVARKWPDSFKGAATPVGTAKLVQA 60 APSYRV+R DI+ + EE VVNAAN +G GDGVC+AV +KWP+SFK +ATPVGTAK V Sbjct 1334 APSYRVKRMDIAKNDEECVVNAANPRGLPGDGVCKAVYKKWPESFKNSATPVGTAKTVMC 1393 Query 61 NGMNVIHAVGPNFSTVTEAEGDRELAAAYRAVAGIINASNIKSVAIPLLSTGVFSGGKDR 120 VIHAVGPNFS +E+EGDRELAAAYR VA + + SVAIPLLSTGV+SGGKDR Sbjct 1394 GTYPVIHAVGPNFSNYSESEGDRELAAAYREVAKEVTRLGVNSVAIPLLSTGVYSGGKDR 1453 Query 121 VMQSLNHLFTAMDTTDADVVIYCRDKAWEKKIQEAIDRRTAVELVSEDISLESDLIRVHP 180 + QSLNHLFTA+D+TDADVVIYCRDK WEKKI EAI RT VEL+ E IS++ D+IRVHP Sbjct 1454 LTQSLNHLFTALDSTDADVVIYCRDKEWEKKIAEAIQMRTQVELLDEHISVDCDIIRVHP 1513 Query 181 DSCLVGRKGYSITDGKLHSYLEGTRFHQTAVDMAEISTLWPKLQDANEQICLYALGESMD 240 DS L GRKGYS T+G L+SYLEGTRFHQTAVDMAE+ T+WPK +ANEQ+CLYALGES++ Sbjct 1514 DSSLAGRKGYSTTEGSLYSYLEGTRFHQTAVDMAEVYTMWPKQTEANEQVCLYALGESIE 1573 Query 241 SIRTKCPVEDADSSTPPKTVPCLCRYAMTAERVARLRMNNTKAIIVCSSFPLPKYRIEGV 300 SIR KCPV+DAD+S+PPKTVPCLCRYAMT ERV RLRMN+ +IIVCSSFPLPKY+IEGV Sbjct 1574 SIRQKCPVDDADASSPPKTVPCLCRYAMTPERVTRLRMNHVTSIIVCSSFPLPKYKIEGV 1633 Query 301 QKVKCDRVLIFDQTVPSLVSPRKY-----------------------------IPAAAST 331 QKVKC +V++FD VPS VSPR+Y +PA + Sbjct 1634 QKVKCSKVMLFDHNVPSRVSPREYKSPQETAQEVSSTTSLTHSQFDLSVDGEELPAPSDL 1693 Query 332 HADTVSLDSTVSTGSAWSFPSEATYETMEVVAEVHHSEPPVPPPRRRRAQ 381 AD + T + + P T + V++ + PV PPRRRR + Sbjct 1694 EADAPIPEPTPDDRAVLTLP--PTIDNFSAVSDWVMNTAPVAPPRRRRGK 1741 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [O'nyong-nyong virus strain SG650] Sequence ID: O90368.1 Length: 2513 Range 1: 1334 to 1660 Score:501 bits(1291), Expect:3e-159, Method:Compositional matrix adjust., Identities:234/327(72%), Positives:274/327(83%), Gaps:0/327(0%) Query 1 APSYRVRRTDISGHAEEAVVNAANAKGTVGDGVCRAVARKWPDSFKGAATPVGTAKLVQA 60 APSYRV+R DI+ + EE VVNAAN +G GDGVC+AV RKWP+SF+ +ATPVGTAK + Sbjct 1334 APSYRVKRMDIAKNTEECVVNAANPRGVPGDGVCKAVYRKWPESFRNSATPVGTAKTIMC 1393 Query 61 NGMNVIHAVGPNFSTVTEAEGDRELAAAYRAVAGIINASNIKSVAIPLLSTGVFSGGKDR 120 VIHAVGPNFS +EAEGDRELA+ YR VA ++ + SVAIPLLSTGV+SGGKDR Sbjct 1394 GQYPVIHAVGPNFSNYSEAEGDRELASVYREVAKEVSRLGVSSVAIPLLSTGVYSGGKDR 1453 Query 121 VMQSLNHLFTAMDTTDADVVIYCRDKAWEKKIQEAIDRRTAVELVSEDISLESDLIRVHP 180 ++QSLNHLFTAMD+TDADVVIYCRDK WEKKI EAI R+ VEL+ + IS++ D++RVHP Sbjct 1454 LLQSLNHLFTAMDSTDADVVIYCRDKEWEKKITEAISLRSQVELLDDHISVDCDIVRVHP 1513 Query 181 DSCLVGRKGYSITDGKLHSYLEGTRFHQTAVDMAEISTLWPKLQDANEQICLYALGESMD 240 DS L GRKGYS +G L+SYLEGTRFHQTAVDMAEI T+WPK +ANEQ+CLYALGES++ Sbjct 1514 DSSLAGRKGYSTVEGALYSYLEGTRFHQTAVDMAEIYTMWPKQTEANEQVCLYALGESIE 1573 Query 241 SIRTKCPVEDADSSTPPKTVPCLCRYAMTAERVARLRMNNTKAIIVCSSFPLPKYRIEGV 300 S+R KCPV+DAD+S PPKTVPCLCRYAMT ERVARLRMN+T +IIVCSSFPLPKY+IEGV Sbjct 1574 SVRQKCPVDDADASFPPKTVPCLCRYAMTPERVARLRMNHTTSIIVCSSFPLPKYKIEGV 1633 Query 301 QKVKCDRVLIFDQTVPSLVSPRKYIPA 327 QKVKC + L+FD VPS VSPR Y PA Sbjct 1634 QKVKCSKALLFDHNVPSRVSPRTYRPA 1660 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Igbo Ora virus] Sequence ID: O90370.1 Length: 2513 Range 1: 1334 to 1660 Score:501 bits(1290), Expect:3e-159, Method:Compositional matrix adjust., Identities:234/327(72%), Positives:274/327(83%), Gaps:0/327(0%) Query 1 APSYRVRRTDISGHAEEAVVNAANAKGTVGDGVCRAVARKWPDSFKGAATPVGTAKLVQA 60 APSYRV+R DI+ + EE VVNAAN +G GDGVC+AV RKWP+SF+ +ATPVGTAK + Sbjct 1334 APSYRVKRMDIAKNTEECVVNAANPRGVPGDGVCKAVYRKWPESFRNSATPVGTAKTIMC 1393 Query 61 NGMNVIHAVGPNFSTVTEAEGDRELAAAYRAVAGIINASNIKSVAIPLLSTGVFSGGKDR 120 VIHAVGPNFS +EAEGDRELA+AYR VA ++ + SVAIPLLSTGV+SGGKDR Sbjct 1394 GQYPVIHAVGPNFSNYSEAEGDRELASAYREVAKEVSRLGVSSVAIPLLSTGVYSGGKDR 1453 Query 121 VMQSLNHLFTAMDTTDADVVIYCRDKAWEKKIQEAIDRRTAVELVSEDISLESDLIRVHP 180 ++QSLNHLF AMD+TDADVVIYCRDK WEKKI EAI R+ VEL+ + IS++ D++RVHP Sbjct 1454 LLQSLNHLFAAMDSTDADVVIYCRDKEWEKKITEAISLRSQVELLDDHISVDCDIVRVHP 1513 Query 181 DSCLVGRKGYSITDGKLHSYLEGTRFHQTAVDMAEISTLWPKLQDANEQICLYALGESMD 240 DS L GRKGYS +G L+SYLEGTRFHQTAVDMAEI T+WPK +ANEQ+CLYALGES++ Sbjct 1514 DSSLAGRKGYSTVEGALYSYLEGTRFHQTAVDMAEIYTMWPKQTEANEQVCLYALGESIE 1573 Query 241 SIRTKCPVEDADSSTPPKTVPCLCRYAMTAERVARLRMNNTKAIIVCSSFPLPKYRIEGV 300 S+R KCPV+DAD+S PPKTVPCLCRYAMT ERVARLRMN+T +IIVCSSFPLPKY+IEGV Sbjct 1574 SVRQKCPVDDADASFPPKTVPCLCRYAMTPERVARLRMNHTTSIIVCSSFPLPKYKIEGV 1633 Query 301 QKVKCDRVLIFDQTVPSLVSPRKYIPA 327 QKVKC + L+FD VPS VSPR Y PA Sbjct 1634 QKVKCSKALLFDHNVPSRVSPRTYRPA 1660 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [O'nyong-nyong virus strain Gulu] Sequence ID: P13886.2 Length: 2514 Range 1: 1334 to 1660 Score:499 bits(1285), Expect:1e-158, Method:Compositional matrix adjust., Identities:233/327(71%), Positives:273/327(83%), Gaps:0/327(0%) Query 1 APSYRVRRTDISGHAEEAVVNAANAKGTVGDGVCRAVARKWPDSFKGAATPVGTAKLVQA 60 APSYRV+R DI+ + EE VVNAAN +G GDGVC+AV RKWP+SF+ +ATPVGTAK + Sbjct 1334 APSYRVKRMDIAKNTEECVVNAANPRGVPGDGVCKAVYRKWPESFRNSATPVGTAKTIMC 1393 Query 61 NGMNVIHAVGPNFSTVTEAEGDRELAAAYRAVAGIINASNIKSVAIPLLSTGVFSGGKDR 120 VIHAVGPNFS +EAEGDRELA+ YR VA ++ + SVAIPLLSTGV+SGGKDR Sbjct 1394 GQYPVIHAVGPNFSNYSEAEGDRELASVYREVAKEVSRLGVSSVAIPLLSTGVYSGGKDR 1453 Query 121 VMQSLNHLFTAMDTTDADVVIYCRDKAWEKKIQEAIDRRTAVELVSEDISLESDLIRVHP 180 ++QSLNHLF AMD+TDADVVIYCRDK WEKKI EAI R+ VEL+ + IS++ D++RVHP Sbjct 1454 LLQSLNHLFAAMDSTDADVVIYCRDKEWEKKITEAISLRSQVELLDDHISVDCDIVRVHP 1513 Query 181 DSCLVGRKGYSITDGKLHSYLEGTRFHQTAVDMAEISTLWPKLQDANEQICLYALGESMD 240 DS L GRKGYS +G L+SYLEGTRFHQTAVDMAEI T+WPK +ANEQ+CLYALGES++ Sbjct 1514 DSSLAGRKGYSTVEGALYSYLEGTRFHQTAVDMAEIYTMWPKQTEANEQVCLYALGESIE 1573 Query 241 SIRTKCPVEDADSSTPPKTVPCLCRYAMTAERVARLRMNNTKAIIVCSSFPLPKYRIEGV 300 S+R KCPV+DAD+S PPKTVPCLCRYAMT ERVARLRMN+T +IIVCSSFPLPKY+IEGV Sbjct 1574 SVRQKCPVDDADASFPPKTVPCLCRYAMTPERVARLRMNHTTSIIVCSSFPLPKYKIEGV 1633 Query 301 QKVKCDRVLIFDQTVPSLVSPRKYIPA 327 QKVKC + L+FD VPS VSPR Y PA Sbjct 1634 QKVKCSKALLFDHNVPSRVSPRTYRPA 1660 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Mayaro virus (strain Brazil)] Sequence ID: Q8QZ73.3 Length: 2437 Range 1: 1335 to 1826 Score:488 bits(1257), Expect:7e-155, Method:Compositional matrix adjust., Identities:284/546(52%), Positives:355/546(65%), Gaps:62/546(11%) Query 1 APSYRVRRTDISGHAEEAVVNAANAKGTVGDGVCRAVARKWPDSFKGAATPVGTAKLVQA 60 AP+Y V+R DI+ E+AVVNAAN +G VGDGVCRAVARKWP +F+ AATPVGTAK V+ Sbjct 1335 APAYAVKRADIATAIEDAVVNAANHRGQVGDGVCRAVARKWPQAFRNAATPVGTAKTVKC 1394 Query 61 NGMNVIHAVGPNFSTVTEAEGDRELAAAYRAVAGIINASNIKSVAIPLLSTGVFSGGKDR 120 + +IHAVGPNF+ +EAEGDR+LAAAYRAVA IN +I SVAIPLLSTG+FS GKDR Sbjct 1395 DETYIIHAVGPNFNNTSEAEGDRDLAAAYRAVAAEINRLSISSVAIPLLSTGIFSAGKDR 1454 Query 121 VMQSLNHLFTAMDTTDADVVIYCRDKAWEKKIQEAIDRRTAVELVSEDISLESDLIRVHP 180 V QSL+HL AMDTT+A V IYCRDK WE+KI+ + R+A ELVS+++ E +L RVHP Sbjct 1455 VHQSLSHLLAAMDTTEARVTIYCRDKTWEQKIKTVLQNRSATELVSDELQFEVNLTRVHP 1514 Query 181 DSCLVGRKGYSITDGKLHSYLEGTRFHQTAVDMAEISTLWPKLQDANEQICLYALGESMD 240 DS LVGR GYS TDG L+SY+EGT+FHQ A+DMAEI+TLWP++QDANE ICLYALGE+MD Sbjct 1515 DSSLVGRPGYSTTDGTLYSYMEGTKFHQAALDMAEITTLWPRVQDANEHICLYALGETMD 1574 Query 241 SIRTKCPVEDADSSTPPKTVPCLCRYAMTAERVARLRMNNTKAIIVCSSFPLPKYRIEGV 300 +IR +CPVED+DSSTPPKTVPCLCRYAMT ERV RLRM++TK +VCSSF LPKYRI GV Sbjct 1575 NIRARCPVEDSDSSTPPKTVPCLCRYAMTPERVTRLRMHHTKDFVVCSSFQLPKYRIPGV 1634 Query 301 QKVKCDRVLIFDQTVPSLVSPRKYIPAAASTHADTVSLDSTVSTGSAWSFPSEATYETME 360 Q+VKC++V++FD P+ VSP +Y+ + T T+SL S T + S +T+ +E Sbjct 1635 QRVKCEKVMLFDAAPPASVSPVQYLTNQSET---TISLSSFSITSDS---SSLSTFPDLE 1688 Query 361 VVAEVHHSEPPVPPPRRR--------RAQVTMHHQELLEVSDMHTPIAARVEIPVYDTAV 412 E+ H V P A++ H + AARV++ V Sbjct 1689 SAEELDHDSQSVRPALNEPDDHQPTPTAELATHPVPPPRPNRARRLAAARVQVQV----- 1743 Query 413 VVERVAIPCTSEYAKPIPAPRAARVVPVPAPRIQRASTYRVSPTPTPRVLRASVCSVTTS 472 V P +++ KPIPAPR + + PVPAPR R P P Sbjct 1744 ---EVHQPPSNQPTKPIPAPRTS-LRPVPAPR-------RYVPRPV-------------- 1778 Query 473 AGVEFPWAPEDLEVLTEPVHCKMREPVELPWEPEDVDIQFGDFETSDKIQFGDIDFDQFX 532 VE PW E ++V + P E E+ DI FGDF S+ + + X Sbjct 1779 --VELPWPLETIDV-------EFGAPTE-----EESDITFGDFSASE----WETISNSSX 1820 Query 533 LGRAGA 538 LGRAGA Sbjct 1821 LGRAGA 1826 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Venezuelan equine encephalitis virus (strain Mena II)] Sequence ID: Q9WJC7.3 Length: 2499 Range 1: 1330 to 1846 Score:426 bits(1096), Expect:4e-133, Method:Compositional matrix adjust., Identities:236/529(45%), Positives:315/529(59%), Gaps:94/529(17%) Query 1 APSYRVRRTDISGHAEEAVVNAANAKGTVGDGVCRAVARKWPDSFKGAATPVGTAKLVQA 60 APSY V R DI+ E +VNAAN+KG G GVC A+ RK+P+SF VG A+LV+ Sbjct 1330 APSYHVVRGDIATATEGVIVNAANSKGQPGSGVCGALYRKYPESFDLQPIEVGKARLVKG 1389 Query 61 NGMNVIHAVGPNFSTVTEAEGDRELAAAYRAVAGIINASNIKSVAIPLLSTGVFSGGKDR 120 + ++IHAVGPNFS V+E EGD++LA AY ++A IIN +N +SVAIPLLSTG+F+G KDR Sbjct 1390 SSKHIIHAVGPNFSKVSEVEGDKQLAEAYESIAKIINDNNYRSVAIPLLSTGIFAGNKDR 1449 Query 121 VMQSLNHLFTAMDTTDADVVIYCRDKAWEKKIQEAIDRRTAVE--LVSEDISL---ESDL 175 +MQSLNHL TA+DTTDADV IYCRDK WE ++E + RR AVE +SED S+ +++L Sbjct 1450 LMQSLNHLLTALDTTDADVAIYCRDKKWEVTLKEVVARREAVEEICISEDSSVAEPDAEL 1509 Query 176 IRVHPDSCLVGRKGYSITDGKLHSYLEGTRFHQTAVDMAEISTLWPKLQDANEQICLYAL 235 +RVHP S L GRKGYS +DGK SYLEGT+FHQ A DMAEI+ +WP +ANEQ+CLY L Sbjct 1510 VRVHPKSSLAGRKGYSTSDGKTFSYLEGTKFHQAAKDMAEINAMWPTATEANEQVCLYIL 1569 Query 236 GESMDSIRTKCPVEDADSSTPPKTVPCLCRYAMTAERVARLRMNNTKAIIVCSSFPLPKY 295 GESM SIR+KCPVE++++STPP T+PCLC +AMT ERV RL+ + + I VCSSFPLPKY Sbjct 1570 GESMSSIRSKCPVEESEASTPPSTLPCLCIHAMTPERVQRLKASRPEQITVCSSFPLPKY 1629 Query 296 RIEGVQKVKCDRVLIFDQTVPSLVSPRKYIPAAASTHADT-------------------- 335 RI GVQK++C ++F VP + PRKY+ A +T AD Sbjct 1630 RITGVQKIQCSHPILFSPKVPEYIHPRKYL--ADATPADNEAAEPTMECVQPLQEERPAN 1687 Query 336 ----VSLDSTVST-------------------------GSAWSFPSEATYETMEVVAEVH 366 V D ++S S+WS P + +E++ V+ + Sbjct 1688 TEQPVEEDDSISVLSEDAPHQVHQVEAEVHRSLCASAQSSSWSIPRASDFESLSVLDSLG 1747 Query 367 HSE---------------------PPVPPPRRRRAQVTMHHQELLE----VSDMHTPIAA 401 ++ PP+P PR R + +LE SD+ + ++ Sbjct 1748 ANDTISMGSSSNETALALRTIFRTPPIPKPRVRSTSTDVDSISVLESLGSTSDVRSIGSS 1807 Query 402 --RVEIPVYDTAVVVERVAIPCTSEYAKPIPAPRAA-RVVPVPAPRIQR 447 ++ V+D + A+P+PAPR R PVP PR +R Sbjct 1808 SDETDVSVFDKGLEF----------MARPVPAPRTIFRTPPVPKPRARR 1846 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Western equine encephalitis virus] Sequence ID: P13896.3 Length: 2467 Range 1: 1328 to 1650 Score:422 bits(1084), Expect:1e-131, Method:Compositional matrix adjust., Identities:199/324(61%), Positives:249/324(76%), Gaps:1/324(0%) Query 1 APSYRVRRTDISGHAEEAVVNAANAKGTVGDGVCRAVARKWPDSFKGAATPVGTAKLVQA 60 AP+YRV R DIS A++A+VNAAN+KG G GVC A+ RKWP +F VGTA+LV+ Sbjct 1328 APAYRVIRGDISKSADQAIVNAANSKGQPGSGVCGALYRKWPAAFDRQPIAVGTARLVKH 1387 Query 61 NGMNVIHAVGPNFSTVTEAEGDRELAAAYRAVAGIINASNIKSVAIPLLSTGVFSGGKDR 120 + +IHAVGPNFS + E EGD +LAAAY ++A I+NA I +++PLLSTG++SGGKDR Sbjct 1388 EPL-IIHAVGPNFSKMPEPEGDLKLAAAYMSIASIVNAERITKISVPLLSTGIYSGGKDR 1446 Query 121 VMQSLNHLFTAMDTTDADVVIYCRDKAWEKKIQEAIDRRTAVELVSEDISLESDLIRVHP 180 VMQSL+HLFTA DTTDADV IYC DK WE +I EAI R+ +VE++ +D ++ DL+RVHP Sbjct 1447 VMQSLHHLFTAFDTTDADVTIYCLDKQWETRIIEAIHRKESVEILDDDKPVDIDLVRVHP 1506 Query 181 DSCLVGRKGYSITDGKLHSYLEGTRFHQTAVDMAEISTLWPKLQDANEQICLYALGESMD 240 +S L GR GYS+ +GKL+SYLEGTRFHQTA D+AEI +WP +ANEQICLY LGESM Sbjct 1507 NSSLAGRPGYSVNEGKLYSYLEGTRFHQTAKDIAEIHAMWPNKSEANEQICLYILGESMS 1566 Query 241 SIRTKCPVEDADSSTPPKTVPCLCRYAMTAERVARLRMNNTKAIIVCSSFPLPKYRIEGV 300 SIR+KCPVE++++S PP T+PCLC YAMTAERV RLR + VCSSF LPKYRI GV Sbjct 1567 SIRSKCPVEESEASAPPHTLPCLCNYAMTAERVYRLRSAKKEQFAVCSSFLLPKYRITGV 1626 Query 301 QKVKCDRVLIFDQTVPSLVSPRKY 324 QK++C + ++F VP V PRKY Sbjct 1627 QKLQCSKPVLFSGVVPPAVHPRKY 1650 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Venezuelan equine encephalitis virus (strain CPA201)] Sequence ID: Q8V294.3 Length: 2497 Range 1: 1330 to 1716 Score:421 bits(1083), Expect:2e-131, Method:Compositional matrix adjust., Identities:213/387(55%), Positives:272/387(70%), Gaps:21/387(5%) Query 1 APSYRVRRTDISGHAEEAVVNAANAKGTVGDGVCRAVARKWPDSFKGAATPVGTAKLVQA 60 APSY V R DI+ E +VNAAN+KG G GVC A+ RK+P+SF VG A+LV+ Sbjct 1330 APSYHVVRGDIATATEGVIVNAANSKGQPGSGVCGALYRKYPESFDLQPIEVGKARLVKG 1389 Query 61 NGMNVIHAVGPNFSTVTEAEGDRELAAAYRAVAGIINASNIKSVAIPLLSTGVFSGGKDR 120 N ++IHAVGPNF+ V+E EGD++LA AY ++A IIN +N +SVAIPLLSTG+F+G KDR Sbjct 1390 NSKHLIHAVGPNFNKVSEVEGDKQLAEAYESIARIINDNNYRSVAIPLLSTGIFAGNKDR 1449 Query 121 VMQSLNHLFTAMDTTDADVVIYCRDKAWEKKIQEAIDRRTAVE--LVSEDISL---ESDL 175 +MQSLNHL TA+DTTDADV IYCRDK WE ++E + RR AVE +SED S+ +++L Sbjct 1450 LMQSLNHLLTALDTTDADVAIYCRDKKWEVTLKEVVARREAVEEICISEDSSVAEPDAEL 1509 Query 176 IRVHPDSCLVGRKGYSITDGKLHSYLEGTRFHQTAVDMAEISTLWPKLQDANEQICLYAL 235 +RVHP S L GRKGYS +DGK SYLEGT+FHQ A DMAEI+ +WP +ANEQ+CLY L Sbjct 1510 VRVHPKSSLAGRKGYSTSDGKTFSYLEGTKFHQAAKDMAEINAMWPAATEANEQVCLYIL 1569 Query 236 GESMDSIRTKCPVEDADSSTPPKTVPCLCRYAMTAERVARLRMNNTKAIIVCSSFPLPKY 295 GESM SIR+KCPVE++++STPP T+PCLC +AMT ERV RL+ + + I VCSSFPLPKY Sbjct 1570 GESMSSIRSKCPVEESEASTPPSTLPCLCIHAMTPERVQRLKASRPEQITVCSSFPLPKY 1629 Query 296 RIEGVQKVKCDRVLIFDQTVPSLVSPRKYIPAAASTHADTVSLDST-------------- 341 RI GVQK++C ++F VP + PRKY+ AAS + + L S Sbjct 1630 RITGVQKIQCSHPILFSPKVPEYIHPRKYLADAASANNEAAELTSVDVQPQLEESPENTE 1689 Query 342 --VSTGSAWSFPSEATYETMEVVAEVH 366 V + S SEA ++ +V AEVH Sbjct 1690 QLVEEEDSISVLSEAPHQVHQVEAEVH 1716 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Venezuelan equine encephalitis virus (strain 3880)] Sequence ID: P36327.3 Length: 2485 Range 1: 1330 to 1833 Score:420 bits(1080), Expect:5e-131, Method:Compositional matrix adjust., Identities:232/527(44%), Positives:318/527(60%), Gaps:62/527(11%) Query 1 APSYRVRRTDISGHAEEAVVNAANAKGTVGDGVCRAVARKWPDSFKGAATPVGTAKLVQA 60 APSY V R DI+ E ++NAAN+KG G GVC A+ +K+P+SF VG A+LV+ Sbjct 1330 APSYHVVRGDIATATEGVIINAANSKGQPGGGVCGALYKKFPESFDLQPIEVGKARLVKG 1389 Query 61 NGMNVIHAVGPNFSTVTEAEGDRELAAAYRAVAGIINASNIKSVAIPLLSTGVFSGGKDR 120 ++IHAVGPNF+ V+E EGD++LA AY ++A I+N +N KSVAIPLLSTG+FSG KDR Sbjct 1390 AAKHIIHAVGPNFNKVSEIEGDKQLAEAYESIAKIVNDNNYKSVAIPLLSTGIFSGNKDR 1449 Query 121 VMQSLNHLFTAMDTTDADVVIYCRDKAWEKKIQEAIDRRTAVE--LVSEDISL---ESDL 175 + QSLNHL TA+DTTDADV IYCRDK WE ++EA+ RR AVE +S+D S+ +++L Sbjct 1450 LTQSLNHLLTALDTTDADVAIYCRDKKWEMTLKEAVARREAVEEICISDDSSVTEPDAEL 1509 Query 176 IRVHPDSCLVGRKGYSITDGKLHSYLEGTRFHQTAVDMAEISTLWPKLQDANEQICLYAL 235 +RVHP S L GRKGYS +DGK SYLEGT+FHQ A D+AEI+ +WP +ANEQ+C+Y L Sbjct 1510 VRVHPKSSLAGRKGYSTSDGKTFSYLEGTKFHQAAKDIAEINAMWPVATEANEQVCMYIL 1569 Query 236 GESMDSIRTKCPVEDADSSTPPKTVPCLCRYAMTAERVARLRMNNTKAIIVCSSFPLPKY 295 GESM SIR+KCPVE++++STPP T+PCLC +AMT ERV RL+ + + I VCSSFPLPKY Sbjct 1570 GESMSSIRSKCPVEESEASTPPSTLPCLCIHAMTPERVQRLKASRPEQITVCSSFPLPKY 1629 Query 296 RIEGVQKVKCDRVLIFDQTVPSLVSPRKYIP---------------------AAASTHAD 334 RI GVQK++C + ++F VP+ + PRKY+ T Sbjct 1630 RITGVQKIQCSQPILFSPKVPAYIHPRKYLVETPTVEENQSTEGTPEQPTLITVGETRTR 1689 Query 335 TVSLDSTVSTGSAWSFPSEA-TYETMEVVAEVHHSEPPVPPPRRRRAQVTMHHQELLEVS 393 T + S S+ T++ ++V A++H PP + ++ H +V Sbjct 1690 TPEPIIIEEEEDSISLLSDGPTHQVLQVEADIHG------PPSASSSSWSIPHASDFDVD 1743 Query 394 DMHTPIAARVEIPVYDT----AVVVERVAIPCTSEY-------AKPIPAPRAA-RVVPVP 441 + + DT +V E ++ S + A+P+PAPR R P P Sbjct 1744 SL----------SILDTLEGASVTSEEASVETNSHFARSMEFLARPVPAPRTVFRNPPQP 1793 Query 442 APRIQRASTYRVSPTPTPRVLRASVCSVTTSAGVEFPWAPEDLEVLT 488 APR + +P+ P + + V+ GV E+LE LT Sbjct 1794 APRTR-------TPSLAPSRASSRISLVSNPPGVNRVITREELEALT 1833 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Eastern equine encephalitis virus (strain PE-3.0815)] Sequence ID: Q306W8.3 Length: 2474 Range 1: 1328 to 1651 Score:420 bits(1080), Expect:6e-131, Method:Compositional matrix adjust., Identities:200/325(62%), Positives:248/325(76%), Gaps:2/325(0%) Query 1 APSYRVRRTDISGHAEEAVVNAANAKGTVGDGVCRAVARKWPDSFKGAATPVGTAKLVQA 60 AP+YRV R DIS +EA+VNAAN KG G GVC A+ +KWP +F GTA LV+ Sbjct 1328 APAYRVIRGDISKSTDEAIVNAANNKGQPGAGVCGALYKKWPGAFDKVPIATGTAHLVK- 1386 Query 61 NGMNVIHAVGPNFSTVTEAEGDRELAAAYRAVAGIINASNIKSVAIPLLSTGVFSGGKDR 120 + N+IHAVGPNFS V+E EG+++L+ Y +A IIN V+IPLLSTG+++GGKDR Sbjct 1387 HTPNIIHAVGPNFSRVSEVEGNQKLSEVYMDIAKIINRERYNKVSIPLLSTGIYAGGKDR 1446 Query 121 VMQSLNHLFTAMDTTDADVVIYCRDKAWEKKIQEAIDRRTAVE-LVSEDISLESDLIRVH 179 VMQSLNHLFTAMDTTDADV IYC DK WE +I++AI R+ +VE LV +D ++ +L+RVH Sbjct 1447 VMQSLNHLFTAMDTTDADVTIYCLDKQWEARIKDAIARKESVEELVEDDKPVDIELVRVH 1506 Query 180 PDSCLVGRKGYSITDGKLHSYLEGTRFHQTAVDMAEISTLWPKLQDANEQICLYALGESM 239 P S LVGR GYS +GK+HSYLEGTRFHQTA D+AEI +WP Q+ANEQICLY LGESM Sbjct 1507 PLSSLVGRPGYSTDEGKVHSYLEGTRFHQTAKDIAEIYAMWPNKQEANEQICLYVLGESM 1566 Query 240 DSIRTKCPVEDADSSTPPKTVPCLCRYAMTAERVARLRMNNTKAIIVCSSFPLPKYRIEG 299 SIR+KCPVED+++S+PP T+PCLC YAMTAERV RLRM + VCSSF LPKYRI G Sbjct 1567 TSIRSKCPVEDSEASSPPHTIPCLCNYAMTAERVYRLRMAKNEQFAVCSSFQLPKYRITG 1626 Query 300 VQKVKCDRVLIFDQTVPSLVSPRKY 324 VQK++C++ +IF VP + PRK+ Sbjct 1627 VQKIQCNKPVIFSGVVPPAIHPRKF 1651 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Eastern equine encephalitis virus (strain PE-0.0155)] Sequence ID: Q306W6.3 Length: 2471 Range 1: 1328 to 1651 Score:420 bits(1079), Expect:8e-131, Method:Compositional matrix adjust., Identities:199/325(61%), Positives:248/325(76%), Gaps:2/325(0%) Query 1 APSYRVRRTDISGHAEEAVVNAANAKGTVGDGVCRAVARKWPDSFKGAATPVGTAKLVQA 60 AP+YRV R DIS +E +VNAAN KG G GVC A+ +KWP +F A GTA LV+ Sbjct 1328 APAYRVIRGDISKSTDEVIVNAANNKGQPGAGVCGALYKKWPGAFDKAPIATGTAHLVK- 1386 Query 61 NGMNVIHAVGPNFSTVTEAEGDRELAAAYRAVAGIINASNIKSVAIPLLSTGVFSGGKDR 120 + N+IHAVGPNFS ++E EG+++L+ Y +A IIN V+IPLLSTGV++GGKDR Sbjct 1387 HTPNIIHAVGPNFSRMSEVEGNQKLSEVYMDIAKIINKERYNKVSIPLLSTGVYAGGKDR 1446 Query 121 VMQSLNHLFTAMDTTDADVVIYCRDKAWEKKIQEAIDRRTAVE-LVSEDISLESDLIRVH 179 VMQSLNHLFTAMDTTDADV IYC DK WE +I++AI R+ +VE LV +D ++ +L+RVH Sbjct 1447 VMQSLNHLFTAMDTTDADVTIYCLDKQWETRIKDAIARKESVEELVEDDKPVDIELVRVH 1506 Query 180 PDSCLVGRKGYSITDGKLHSYLEGTRFHQTAVDMAEISTLWPKLQDANEQICLYALGESM 239 P S LVGR GYS +GK+HSYLEGTRFHQTA D+AEI +WP Q+ANEQICLY LGESM Sbjct 1507 PQSSLVGRPGYSTNEGKVHSYLEGTRFHQTAKDIAEIYAMWPNKQEANEQICLYVLGESM 1566 Query 240 DSIRTKCPVEDADSSTPPKTVPCLCRYAMTAERVARLRMNNTKAIIVCSSFPLPKYRIEG 299 SIR+KCPVE++++S+PP T+PCLC YAMTAERV RLRM + VCSSF LPKYRI G Sbjct 1567 TSIRSKCPVEESEASSPPHTIPCLCNYAMTAERVYRLRMAKNEQFAVCSSFQLPKYRITG 1626 Query 300 VQKVKCDRVLIFDQTVPSLVSPRKY 324 VQK++C++ +IF VP + PRK+ Sbjct 1627 VQKIQCNKPVIFSGVVPPAIHPRKF 1651 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Barmah Forest virus] Sequence ID: P87515.3 Length: 2411 Range 1: 1332 to 1747 Score:420 bits(1079), Expect:8e-131, Method:Compositional matrix adjust., Identities:226/417(54%), Positives:275/417(65%), Gaps:38/417(9%) Query 1 APSYRVRRTDISGHAEEAVVNAANAKGTVGDGVCRAVARKWPDSFKGAATPVGTAKLVQA 60 AP+YRV+R DIS E+AVVNAAN +G G GVC A+ RKWPD+F ATP GTA Sbjct 1332 APAYRVKRGDISNAPEDAVVNAANQQGVKGAGVCGAIYRKWPDAFGDVATPTGTAVSKSV 1391 Query 61 NGMNVIHAVGPNFSTVTEAEGDRELAAAYRAVAGIINASNIKSVAIPLLSTGVFSGGKDR 120 VIHAVGPNFS +E EGDR+LA+AYRA A I+ I +VA+PLLSTG+++GGK+R Sbjct 1392 QDKLVIHAVGPNFSKCSEEEGDRDLASAYRAAAEIVMDKKITTVAVPLLSTGIYAGGKNR 1451 Query 121 VMQSLNHLFTAMDTTDADVVIYCRDKAWEKKIQEAIDRRTAVELVSEDISLESDLIRVHP 180 V QSLNHLFTA D TDADV IYC DK WEKKI+EAID RT+VE+V +D+ LE +L+RVHP Sbjct 1452 VEQSLNHLFTAFDNTDADVTIYCMDKTWEKKIKEAIDHRTSVEMVQDDVQLEEELVRVHP 1511 Query 181 DSCLVGRKGYSITDGKLHSYLEGTRFHQTAVDMAEISTLWPKLQDANEQICLYALGESMD 240 S L GRKGYS G++ SYLEGT+FHQTAVD+AE+ LWP L+++NEQI Y LGESMD Sbjct 1512 LSSLAGRKGYSTDSGRVFSYLEGTKFHQTAVDIAEMQVLWPALKESNEQIVAYTLGESMD 1571 Query 241 SIRTKCPVEDADSSTPPKTVPCLCRYAMTAERVARLRMNNTKAIIVCSSFPLPKYRIEGV 300 IR KCP ED D+STPP+TVPCLCRYAMT ERV RL+ NT VCSSF LPKY I+GV Sbjct 1572 QIRGKCPTEDTDASTPPRTVPCLCRYAMTPERVYRLKCTNTTQFTVCSSFELPKYHIQGV 1631 Query 301 QKVKCDRVLIFDQTVPSLVSP---RKYIPAAASTHA--DTVSLDST----------VSTG 345 Q+VKC+R++I D TVP R+Y P+ S ++ D+ SL + + G Sbjct 1632 QRVKCERIIILDPTVPPTYKRPCIRRY-PSTISCNSSEDSRSLSTFSVSSDSSIGSLPVG 1690 Query 346 SAWSFPSEATY---------------------ETMEVVAEVHHSEPPVPPPR-RRRA 380 P+ T T V AEVH + P PP +RA Sbjct 1691 DTRPIPAPRTIFRPVPAPRAPVLRTTPPPKPPRTFTVRAEVHQAPPTPVPPPRPKRA 1747 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Eastern equine encephalitis virus (strain Florida 91-469)] Sequence ID: Q4QXJ8.3 Length: 2494 Range 1: 1328 to 1868 Score:419 bits(1078), Expect:9e-131, Method:Compositional matrix adjust., Identities:248/556(45%), Positives:317/556(57%), Gaps:106/556(19%) Query 1 APSYRVRRTDISGHAEEAVVNAANAKGTVGDGVCRAVARKWPDSFKGAATPVGTAKLVQA 60 AP+YRV R DI+ +E +VNAAN KG G GVC A+ RKWP +F G A LV+ Sbjct 1328 APAYRVVRGDITKSNDEVIVNAANNKGQPGSGVCGALYRKWPGAFDKQPVATGKAHLVK- 1386 Query 61 NGMNVIHAVGPNFSTVTEAEGDRELAAAYRAVAGIINASNIKSVAIPLLSTGVFSGGKDR 120 + NVIHAVGPNFS ++E EGD++L+ Y +A IIN V+IPLLSTG+++GGKDR Sbjct 1387 HSPNVIHAVGPNFSRLSENEGDQKLSEVYMDIARIINNERFTKVSIPLLSTGIYAGGKDR 1446 Query 121 VMQSLNHLFTAMDTTDADVVIYCRDKAWEKKIQEAIDRRTAVE-LVSEDISLESDLIRVH 179 VMQSLNHLFTAMDTTDAD+ IYC DK WE +I+EAI R+ +VE L +D ++ +L+RVH Sbjct 1447 VMQSLNHLFTAMDTTDADITIYCLDKQWESRIKEAITRKESVEELTEDDRPVDIELVRVH 1506 Query 180 PDSCLVGRKGYSITDGKLHSYLEGTRFHQTAVDMAEISTLWPKLQDANEQICLYALGESM 239 P S L GR GYS T+GK++SYLEGTRFHQTA D+AEI +WP Q+ANEQICLY LGESM Sbjct 1507 PLSSLAGRPGYSTTEGKVYSYLEGTRFHQTAKDIAEIYAMWPNKQEANEQICLYVLGESM 1566 Query 240 DSIRTKCPVEDADSSTPPKTVPCLCRYAMTAERVARLRMNNTKAIIVCSSFPLPKYRIEG 299 +SIR+KCPVE++++S+PP T+PCLC YAMTAERV RLRM + VCSSF LPKYRI G Sbjct 1567 NSIRSKCPVEESEASSPPHTIPCLCNYAMTAERVYRLRMAKNEQFAVCSSFQLPKYRITG 1626 Query 300 VQKVKCDRVLIFDQTVPSLVSPRKYI--------------------------------PA 327 VQK++C + +IF TVP + PRK+ P Sbjct 1627 VQKIQCSKPVIFSGTVPPAIHPRKFASVTVEDTPVVQPERLVPRRPAPPVPVPARIPSPP 1686 Query 328 AASTHADTVSLDS-------TVSTG--------SAWSFPS---------------EATYE 357 ST+ T S+ S + S+G S WS PS + T+ Sbjct 1687 CTSTNGSTTSIQSLGEDQSASASSGAEISVDQVSLWSIPSATGFDVRTSSSLSLEQPTFP 1746 Query 358 TMEVVAEVHHSE---------------PPVPPPRRRRAQVTMHHQELLEVSDMHTPIAAR 402 TM V AE+H S+ P PP + R S HT Sbjct 1747 TMVVEAEIHASQGSLWSIPSITGSETRAPSPPSQDSRPSTP-------SASGSHT----S 1795 Query 403 VEIPVYDT-AVVVE---RVAIPCTSEYAKPIPAPR---------AARVVPVPAPRIQRAS 449 V++ +D+ A ++E R SE KPIPAPR A + P+P PR + Sbjct 1796 VDLITFDSVAEILEDFSRSPFQFLSE-IKPIPAPRTRVNNMSRSADTIKPIPKPR--KCQ 1852 Query 450 TYRVSPTPTPRVLRAS 465 P RV+ A+ Sbjct 1853 VKYTQPPGVARVISAA 1868 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Venezuelan equine encephalitis virus (strain Trinidad donkey)] Sequence ID: P27282.3 Length: 2493 Range 1: 1330 to 1841 Score:416 bits(1068), Expect:2e-129, Method:Compositional matrix adjust., Identities:237/536(44%), Positives:323/536(60%), Gaps:72/536(13%) Query 1 APSYRVRRTDISGHAEEAVVNAANAKGTVGDGVCRAVARKWPDSFKGAATPVGTAKLVQA 60 APSY V R DI+ E ++NAAN+KG G GVC A+ +K+P+SF VG A+LV+ Sbjct 1330 APSYHVVRGDIATATEGVIINAANSKGQPGGGVCGALYKKFPESFDLQPIEVGKARLVKG 1389 Query 61 NGMNVIHAVGPNFSTVTEAEGDRELAAAYRAVAGIINASNIKSVAIPLLSTGVFSGGKDR 120 ++IHAVGPNF+ V+E EGD++LA AY ++A I+N +N KSVAIPLLSTG+FSG KDR Sbjct 1390 AAKHIIHAVGPNFNKVSEVEGDKQLAEAYESIAKIVNDNNYKSVAIPLLSTGIFSGNKDR 1449 Query 121 VMQSLNHLFTAMDTTDADVVIYCRDKAWEKKIQEAIDRRTAVE--LVSEDISL---ESDL 175 + QSLNHL TA+DTTDADV IYCRDK WE ++EA+ RR AVE +S+D S+ +++L Sbjct 1450 LTQSLNHLLTALDTTDADVAIYCRDKKWEMTLKEAVARREAVEEICISDDSSVTEPDAEL 1509 Query 176 IRVHPDSCLVGRKGYSITDGKLHSYLEGTRFHQTAVDMAEISTLWPKLQDANEQICLYAL 235 +RVHP S L GRKGYS +DGK SYLEGT+FHQ A D+AEI+ +WP +ANEQ+C+Y L Sbjct 1510 VRVHPKSSLAGRKGYSTSDGKTFSYLEGTKFHQAAKDIAEINAMWPVATEANEQVCMYIL 1569 Query 236 GESMDSIRTKCPVEDADSSTPPKTVPCLCRYAMTAERVARLRMNNTKAIIVCSSFPLPKY 295 GESM SIR+KCPVE++++STPP T+PCLC +AMT ERV RL+ + + I VCSSFPLPKY Sbjct 1570 GESMSSIRSKCPVEESEASTPPSTLPCLCIHAMTPERVQRLKASRPEQITVCSSFPLPKY 1629 Query 296 RIEGVQKVKCDRVLIFDQTVPSLVSPRKYI-----------PAAASTHAD-------TVS 337 RI GVQK++C + ++F VP+ + PRKY+ P+A + + ++ Sbjct 1630 RITGVQKIQCSQPILFSPKVPAYIHPRKYLVETPPVDETPEPSAENQSTEGTPEQPPLIT 1689 Query 338 LDST-----------VSTGSAWSFPSEA-TYETMEVVAEVHHSEPPVPPPRRRRAQVTMH 385 D T + S S+ T++ ++V A++H PP + ++ Sbjct 1690 EDETRTRTPEPIIIEEEEEDSISLLSDGPTHQVLQVEADIHG------PPSVSSSSWSIP 1743 Query 386 HQELLEVSDMHTPIAARVEIPVYDTAVVVERVAIPCTSEY--------AKPIPAPRAA-R 436 H +V + + + A V T+ Y A+P+PAPR R Sbjct 1744 HASDFDVDSLSI-------LDTLEGASVTSGATSAETNSYFAKSMEFLARPVPAPRTVFR 1796 Query 437 VVPVPAPRIQRASTYRVSPTPTPRVLRASVCS----VTTSAGVEFPWAPEDLEVLT 488 P PAPR T TP + + CS V+T GV E+LE LT Sbjct 1797 NPPHPAPR-----------TRTPSLAPSRACSRTSLVSTPPGVNRVITREELEALT 1841 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Venezuelan equine encephalitis virus (strain P676)] Sequence ID: P36328.2 Length: 2493 Range 1: 1330 to 1659 Score:412 bits(1060), Expect:3e-128, Method:Compositional matrix adjust., Identities:193/330(58%), Positives:252/330(76%), Gaps:5/330(1%) Query 1 APSYRVRRTDISGHAEEAVVNAANAKGTVGDGVCRAVARKWPDSFKGAATPVGTAKLVQA 60 APSY V R DI+ E ++NAAN+KG G GVC A+ +K+P+SF VG A+LV+ Sbjct 1330 APSYHVVRGDIATATEGVIINAANSKGQPGGGVCGALYKKFPESFDLQPIEVGKARLVKG 1389 Query 61 NGMNVIHAVGPNFSTVTEAEGDRELAAAYRAVAGIINASNIKSVAIPLLSTGVFSGGKDR 120 ++IHAVGPNF+ V+E EGD++LA AY ++A I+N +N KSVAIPLLSTG+FSG KDR Sbjct 1390 AAKHIIHAVGPNFNKVSEVEGDKQLAEAYESIAKIVNDNNYKSVAIPLLSTGIFSGNKDR 1449 Query 121 VMQSLNHLFTAMDTTDADVVIYCRDKAWEKKIQEAIDRRTAVE--LVSEDISL---ESDL 175 + QSLNHL TA+DTTDADV IYCRDK WE ++EA+ RR AVE +S+D S+ +++L Sbjct 1450 LTQSLNHLLTALDTTDADVAIYCRDKKWEMTLKEAVARREAVEEICISDDSSVTEPDAEL 1509 Query 176 IRVHPDSCLVGRKGYSITDGKLHSYLEGTRFHQTAVDMAEISTLWPKLQDANEQICLYAL 235 +RVHP S L GRKGYS +DGK SYLEGT+FHQ A D+AEI+ +WP +ANEQ+C+Y L Sbjct 1510 VRVHPKSSLAGRKGYSTSDGKTFSYLEGTKFHQAAKDIAEINAMWPVATEANEQVCMYIL 1569 Query 236 GESMDSIRTKCPVEDADSSTPPKTVPCLCRYAMTAERVARLRMNNTKAIIVCSSFPLPKY 295 GESM SIR+KCPVE++++STPP T+PCLC +AMT ERV RL+ + + I VCSSFPLPKY Sbjct 1570 GESMSSIRSKCPVEESEASTPPSTLPCLCIHAMTPERVQRLKASRPEQITVCSSFPLPKY 1629 Query 296 RIEGVQKVKCDRVLIFDQTVPSLVSPRKYI 325 RI GVQK++C + ++F VP+ + PRKY+ Sbjct 1630 RITGVQKIQCSQPILFSPKVPAYIHPRKYL 1659 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Ockelbo virus] Sequence ID: P27283.2 Length: 2515 Range 1: 1348 to 1773 Score:397 bits(1021), Expect:4e-123, Method:Compositional matrix adjust., Identities:212/426(50%), Positives:272/426(63%), Gaps:47/426(11%) Query 1 APSYRVRRTDISGHAEEAVVNAANAKGTVGDGVCRAVARKWPDSFKGAATPVGTAKLVQA 60 APSYR +R +I+ EEAVVNAAN G G+GVCRA+ ++WP+SF +AT GTAKL Sbjct 1348 APSYRTKRENIADCQEEAVVNAANPLGRPGEGVCRAIYKRWPNSFTDSATETGTAKLTVC 1407 Query 61 NGMNVIHAVGPNFSTVTEAEGDRELAAAYRAVAGIINASNIKSVAIPLLSTGVFSGGKDR 120 +G VIHAVGP+F EAE + L AY AVA ++N NIKSVAIPLLSTG+++ GKDR Sbjct 1408 HGKKVIHAVGPDFRKHPEAEALKLLQNAYHAVADLVNEHNIKSVAIPLLSTGIYAAGKDR 1467 Query 121 VMQSLNHLFTAMDTTDADVVIYCRDKAWEKKIQEAIDRRTAV-ELVSEDISLESDLIRVH 179 + SLN L TA+D TDADV IYC DK W+++I + + +V EL ED+ ++ +L+ +H Sbjct 1468 LEVSLNCLTTALDRTDADVTIYCLDKKWKERIDAVLQLKESVTELKDEDMEIDDELVWIH 1527 Query 180 PDSCLVGRKGYSITDGKLHSYLEGTRFHQTAVDMAEISTLWPKLQDANEQICLYALGESM 239 PDSCL GRKG+S T GKL+SY EGT+FHQ A DMAEI L+P Q++NEQ+C Y LGE+M Sbjct 1528 PDSCLKGRKGFSTTKGKLYSYFEGTKFHQAAKDMAEIKVLFPNDQESNEQLCAYILGETM 1587 Query 240 DSIRTKCPVEDADSSTPPKTVPCLCRYAMTAERVARLRMNNTKAIIVCSSFPLPKYRIEG 299 ++IR KCPV+ SS+PPKT+PCLC YAMT ERV RLR NN K + VCSS PLPKY+I+ Sbjct 1588 EAIREKCPVDHNPSSSPPKTLPCLCMYAMTPERVHRLRSNNVKEVTVCSSTPLPKYKIKN 1647 Query 300 VQKVKCDRVLIFDQTVPSLVSPRKYI-----PAA---------------ASTHADTVSLD 339 VQKV+C +V++F+ P+ V RKYI PAA A AD SLD Sbjct 1648 VQKVQCTKVVLFNPHTPAFVPARKYIEVPEQPAAPPAQDEEAPEAVATPAPPAADNTSLD 1707 Query 340 ST------------------------VSTGSAWSFPSEATYETMEVVAEVHH-SEP-PVP 373 T ++ WS + VVA+VH EP P+P Sbjct 1708 VTDISLDMDDSSEGSLFSSFSGSDNSITCMDRWSSGPSSLDRRQVVVADVHAVQEPAPIP 1767 Query 374 PPRRRR 379 PPR ++ Sbjct 1768 PPRLKK 1773 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; AltName: Full=p270 nonstructural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Sindbis virus] Sequence ID: P03317.2 Length: 2513 Range 1: 1348 to 1776 Score:393 bits(1009), Expect:2e-121, Method:Compositional matrix adjust., Identities:212/429(49%), Positives:275/429(64%), Gaps:50/429(11%) Query 1 APSYRVRRTDISGHAEEAVVNAANAKGTVGDGVCRAVARKWPDSFKGAATPVGTAKLVQA 60 APSYR +R +I+ EEAVVNAAN G G+GVCRA+ ++WP SF +AT GTA++ Sbjct 1348 APSYRTKRENIADCQEEAVVNAANPLGRPGEGVCRAIYKRWPTSFTDSATETGTARMTVC 1407 Query 61 NGMNVIHAVGPNFSTVTEAEGDRELAAAYRAVAGIINASNIKSVAIPLLSTGVFSGGKDR 120 G VIHAVGP+F EAE + L AY AVA ++N NIKSVAIPLLSTG+++ GKDR Sbjct 1408 LGKKVIHAVGPDFRKHPEAEALKLLQNAYHAVADLVNEHNIKSVAIPLLSTGIYAAGKDR 1467 Query 121 VMQSLNHLFTAMDTTDADVVIYCRDKAWEKKIQEAIDRRTAV-ELVSEDISLESDLIRVH 179 + SLN L TA+D TDADV IYC DK W+++I A+ + +V EL ED+ ++ +L+ +H Sbjct 1468 LEVSLNCLTTALDRTDADVTIYCLDKKWKERIDAALQLKESVTELKDEDMEIDDELVWIH 1527 Query 180 PDSCLVGRKGYSITDGKLHSYLEGTRFHQTAVDMAEISTLWPKLQDANEQICLYALGESM 239 PDSCL GRKG+S T GKL+SY EGT+FHQ A DMAEI L+P Q++NEQ+C Y LGE+M Sbjct 1528 PDSCLKGRKGFSTTKGKLYSYFEGTKFHQAAKDMAEIKVLFPNDQESNEQLCAYILGETM 1587 Query 240 DSIRTKCPVEDADSSTPPKTVPCLCRYAMTAERVARLRMNNTKAIIVCSSFPLPKYRIEG 299 ++IR KCPV+ SS+PPKT+PCLC YAMT ERV RLR NN K + VCSS PLPK++I+ Sbjct 1588 EAIREKCPVDHNPSSSPPKTLPCLCMYAMTPERVHRLRSNNVKEVTVCSSTPLPKHKIKN 1647 Query 300 VQKVKCDRVLIFDQTVPSLVSPRKYI---------PAAAS-----------THADTVSLD 339 VQKV+C +V++F+ P+ V RKYI PA A + AD SLD Sbjct 1648 VQKVQCTKVVLFNPHTPAFVPARKYIEVPEQPTAPPAQAEEAPEVVATPSPSTADNTSLD 1707 Query 340 ST------------------------VSTGSAWSF-PS--EATYETMEVVAEVHH-SEP- 370 T +++ +WS PS E VVA+VH EP Sbjct 1708 VTDISLDMDDSSEGSLFSSFSGSDNSITSMDSWSSGPSSLEIVDRRQVVVADVHAVQEPA 1767 Query 371 PVPPPRRRR 379 P+PPPR ++ Sbjct 1768 PIPPPRLKK 1776 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Aura virus] Sequence ID: Q86924.3 Length: 2499 Range 1: 1346 to 1671 Score:387 bits(995), Expect:1e-119, Method:Compositional matrix adjust., Identities:191/326(59%), Positives:233/326(71%), Gaps:1/326(0%) Query 1 APSYRVRRTDISGHAEEAVVNAANAKGTVGDGVCRAVARKWPDSFKGAATPVGTAKLVQA 60 APSYRV+R +I+ EEAVVNAANA+G GDGVCRA+ +KWP SF+ A T V TA + Sbjct 1346 APSYRVKRMNIADCTEEAVVNAANARGKPGDGVCRAIFKKWPKSFENATTEVETAVMKPC 1405 Query 61 NGMNVIHAVGPNFSTVTEAEGDRELAAAYRAVAGIINASNIKSVAIPLLSTGVFSGGKDR 120 + VIHAVGP+F T E + L AY VA I+N I SVAIPLLSTG+++ G DR Sbjct 1406 HNKVVIHAVGPDFRKYTLEEATKLLQNAYHDVAKIVNEKGISSVAIPLLSTGIYAAGADR 1465 Query 121 VMQSLNHLFTAMDTTDADVVIYCRDKAWEKKIQEAIDRRTAV-ELVSEDISLESDLIRVH 179 + SL LFTA+D TDADV IYC DK WE++I +AI R V EL DI ++ L RVH Sbjct 1466 LDLSLRCLFTALDRTDADVTIYCLDKKWEQRIADAIRMREQVTELKDPDIEIDEGLTRVH 1525 Query 180 PDSCLVGRKGYSITDGKLHSYLEGTRFHQTAVDMAEISTLWPKLQDANEQICLYALGESM 239 PDSCL GYS GKL+SY EGT+FHQTA D+AEI L+P +Q ANEQICLY LGE M Sbjct 1526 PDSCLKDHIGYSTQYGKLYSYFEGTKFHQTAKDIAEIRALFPDVQAANEQICLYTLGEPM 1585 Query 240 DSIRTKCPVEDADSSTPPKTVPCLCRYAMTAERVARLRMNNTKAIIVCSSFPLPKYRIEG 299 +SIR KCPVED+ +S PPKT+PCLC YAMTAER+ R+R N+ I VCSSFPLPKYRI+ Sbjct 1586 ESIREKCPVEDSPASAPPKTIPCLCMYAMTAERICRVRSNSVTNITVCSSFPLPKYRIKN 1645 Query 300 VQKVKCDRVLIFDQTVPSLVSPRKYI 325 VQK++C +V++F+ VP + R YI Sbjct 1646 VQKIQCTKVVLFNPDVPPYIPARVYI 1671 >RecName: Full=Polyprotein nsP1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Middelburg virus] Sequence ID: P03318.2 Length: 995 Range 1: 1 to 327 Score:363 bits(933), Expect:2e-115, Method:Compositional matrix adjust., Identities:201/382(53%), Positives:244/382(63%), Gaps:56/382(14%) Query 82 DRELAAAYRAVAGIINASNIKSVAIPLLSTGVFSGGKDRVMQSLNHLFTAMDTTDADVVI 141 D +LAA YRAVA + + + ++++AIPLLSTG F+GGKDRV+QSLNHLFTA+DTTD DV I Sbjct 1 DADLAAVYRAVASLADET-VRTMAIPLLSTGTFAGGKDRVLQSLNHLFTALDTTDVDVTI 59 Query 142 YCRDKAWEKKIQEAIDRRTAVELVSEDISLESDLIRVHPDSCLVGRKGYSITDGKLHSYL 201 YCRDK+WEKKIQEAID RTA EL+ +D ++ +L RVHPDSCLVGR G+S DG+LHSYL Sbjct 60 YCRDKSWEKKIQEAIDMRTATELLDDDTTVMKELTRVHPDSCLVGRSGFSTVDGRLHSYL 119 Query 202 EGTRFHQTAVDMAEISTLWPKLQDANEQICLYALGESMDSIRTKCPVEDADSSTPPKTVP 261 EGTRFHQTAVD+AE TLWP+ ++ANEQI Y LGESM++IRTKCPV+D DSS PP TVP Sbjct 120 EGTRFHQTAVDVAERPTLWPRREEANEQITHYVLGESMEAIRTKCPVDDTDSSAPPCTVP 179 Query 262 CLCRYAMTAERVARLRMNNTKAIIVCSSFPLPKYRIEGVQKVKCDRVLIFDQTVPSLVSP 321 CLCRYAMT ERV RLR K VCSSFPLPKY+I GVQ+V C V++F+ VP+LVSP Sbjct 180 CLCRYAMTPERVHRLRAAQVKQFTVCSSFPLPKYKIPGVQRVACSAVMLFNHDVPALVSP 239 Query 322 RKYI-PAAASTHADTVSLDSTVSTGSAWSFPSEATYETMEVVAEVHHSEPPVPPPRRRRA 380 RKY P+ +S + + + G S++ YE ME PV P Sbjct 240 RKYREPSISSESSSSGLSVFDLDIG------SDSEYEPME----------PVQPE----- 278 Query 381 QVTMHHQELLEVSDMHTPIAARVEIPVYDTAVVVERVAIPCTSEYAKPIPAPRAARVVPV 440 P+ D AVV E P E P+ APR AR P Sbjct 279 -------------------------PLIDLAVVEE--TAPVRLERVAPVAAPRRARATPF 311 Query 441 PAPRIQRASTYRVSPTPTPRVL 462 QR V+P P PR + Sbjct 312 TLE--QRV----VAPVPAPRTM 327 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Salmon pancreas disease virus] Sequence ID: Q8JJX1.1 Length: 2601 Range 1: 1422 to 1745 Score:228 bits(581), Expect:1e-64, Method:Compositional matrix adjust., Identities:129/324(40%), Positives:175/324(54%), Gaps:19/324(5%) Query 1 APSYRVRRTDISGHAEEAVVNAANAKGTVGDGVCRAVARKWPDSFKGAATPVGTAKLVQA 60 AP YRV +I EE +VNAAN+ G GDGVC A+ + D+F A G A LV+ Sbjct 1422 APGYRVLNRNIITAEEEVLVNAANSNGRPGDGVCGALYGAFGDAFPNGAIGAGNAVLVRG 1481 Query 61 NGMNVIHAVGPNFSTVTEAEGDRELAAAYRAVAGIINASNIKSVAIPLLSTGVFSGGKDR 120 +IHA G +F V E G R+L AAYRA A ++ A+ I S AIPLLST +FS G++R Sbjct 1482 LEATIIHAAGADFREVDEETGARQLRAAYRAAATLVTANGITSAAIPLLSTHIFSNGRNR 1541 Query 121 VMQSLNHLFTAMDTTDADVVIYCRDKAWEKKIQEAIDRR----------------TAVEL 164 + QS + L A DTT+ DV IYC +IQ+ ID + Sbjct 1542 LEQSFSALVEAFDTTECDVTIYCLANNMAARIQQLIDAHAREEFDEEVVVEEEEEHEADA 1601 Query 165 VSEDISLES---DLIRVHPDSCLVGRKGYSITDGKLHSYLEGTRFHQTAVDMAEISTLWP 221 +S+ +L S + + V S L GR GYS G S GT+FH+ AV M+ I WP Sbjct 1602 MSDTETLSSFGDETVWVPKHSTLAGRPGYSAYYGDRRSLFVGTKFHRAAVAMSSIEAAWP 1661 Query 222 KLQDANEQICLYALGESMDSIRTKCPVEDADSSTPPKTVPCLCRYAMTAERVARLRMNNT 281 K ++AN ++ Y G+ + + CPV+D PP ++PC C YAMT ERV L+ Sbjct 1662 KTKEANAKLIEYIRGQHLVDVLKSCPVDDIPVGRPPSSLPCGCIYAMTPERVTVLKQRPQ 1721 Query 282 KAIIVCSSFPLPKYRIEGVQKVKC 305 + +VCS+F LP I+ V KV+C Sbjct 1722 EGFVVCSAFKLPLTNIQDVTKVEC 1745 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Sleeping disease virus] Sequence ID: Q8QL53.1 Length: 2593 Range 1: 1421 to 1744 Score:226 bits(576), Expect:4e-64, Method:Compositional matrix adjust., Identities:130/324(40%), Positives:172/324(53%), Gaps:19/324(5%) Query 1 APSYRVRRTDISGHAEEAVVNAANAKGTVGDGVCRAVARKWPDSFKGAATPVGTAKLVQA 60 AP YRV +I EE +VNAAN+ G GDGVC A+ + D+F A G A LV+ Sbjct 1421 APGYRVLNKNIITAEEEVLVNAANSNGRPGDGVCGALYGAFGDAFPNGAIGAGNAVLVRG 1480 Query 61 NGMNVIHAVGPNFSTVTEAEGDRELAAAYRAVAGIINASNIKSVAIPLLSTGVFSGGKDR 120 +IHA G +F V E G R+L AAYRA A ++ A+ I S AIPLLST +FS G++R Sbjct 1481 LEATIIHAAGADFREVDEETGARQLRAAYRAAATLVTANGITSAAIPLLSTHIFSNGRNR 1540 Query 121 VMQSLNHLFTAMDTTDADVVIYCRDKAWEKKIQEAIDRRTAVELV--------------- 165 + QS L A DTT+ DV IYC +IQ+ ID E Sbjct 1541 LEQSFGALVEAFDTTECDVTIYCLANNMAARIQQLIDDHAREEFDEEVVVEEEEEHEANA 1600 Query 166 ---SEDISLESD-LIRVHPDSCLVGRKGYSITDGKLHSYLEGTRFHQTAVDMAEISTLWP 221 +E +S D + V S L GR GYS T G S GT+FH+ AV M+ I WP Sbjct 1601 MCDTETLSSFGDETVWVPKHSTLAGRPGYSATYGDRRSLFVGTKFHRAAVAMSSIEAAWP 1660 Query 222 KLQDANEQICLYALGESMDSIRTKCPVEDADSSTPPKTVPCLCRYAMTAERVARLRMNNT 281 + ++AN ++ Y G+ + + CPV D PP ++PC C YAMT ERV L+ Sbjct 1661 RTKEANAKLIEYIRGQHLVDVLKSCPVNDIPVGRPPSSLPCGCIYAMTPERVTVLKQRPQ 1720 Query 282 KAIIVCSSFPLPKYRIEGVQKVKC 305 + +VCS+F LP I+ V KV+C Sbjct 1721 EGFVVCSAFKLPLTNIQDVTKVEC 1744 >RecName: Full=Non-structural polyprotein p200; Short=p200; Contains: RecName: Full=Protease/methyltransferase p150; Short=p150; Contains: RecName: Full=RNA-directed RNA polymerase p90; Short=p90 [Rubella virus strain RN-UK86] Sequence ID: Q8BCR0.1 Length: 2116 Range 1: 834 to 942 Score:46.6 bits(109), Expect:2e-05, Method:Compositional matrix adjust., Identities:38/109(35%), Positives:49/109(44%), Gaps:10/109(9%) Query 17 EAVVNAANAKGTVGDGVCRAV-----ARKWPDSFKGAATPVGTAKLVQANG---MNVIHA 68 + VVNAAN G GVC A+ A D + A P G A +G ++IHA Sbjct 834 KVVVNAANEGLLAGSGVCGAIFANATAALAADCRRLAPCPTGEAVATPGHGCGYTHIIHA 893 Query 69 VGPNFSTVTEA--EGDRELAAAYRAVAGIINASNIKSVAIPLLSTGVFS 115 V P A EG+ L AYR++ + A VA PLL GV+ Sbjct 894 VAPRRPRDPAALEEGEALLERAYRSIVALAAARRWACVACPLLGAGVYG 942 >RecName: Full=Non-structural polyprotein p200; Short=p200; Contains: RecName: Full=Protease/methyltransferase p150; Short=p150; Contains: RecName: Full=RNA-directed RNA polymerase p90; Short=p90 [Rubella virus strain TO-336 vaccine] Sequence ID: Q99IE7.1 Length: 2116 Range 1: 834 to 942 Score:46.6 bits(109), Expect:2e-05, Method:Compositional matrix adjust., Identities:38/109(35%), Positives:49/109(44%), Gaps:10/109(9%) Query 17 EAVVNAANAKGTVGDGVCRAV-----ARKWPDSFKGAATPVGTAKLVQANG---MNVIHA 68 + VVNAAN G GVC A+ A D + A P G A +G ++IHA Sbjct 834 KVVVNAANEGLLAGSGVCGAIFANATAALAADCRRLAPCPTGEAVATPGHGCGYTHIIHA 893 Query 69 VGPNFSTVTEA--EGDRELAAAYRAVAGIINASNIKSVAIPLLSTGVFS 115 V P A EG+ L AYR++ + A VA PLL GV+ Sbjct 894 VAPRRPRDPAALEEGEALLERAYRSIVALAAARRWACVACPLLGAGVYG 942 >RecName: Full=Non-structural polyprotein p200; Short=p200; Contains: RecName: Full=Protease/methyltransferase p150; Short=p150; Contains: RecName: Full=RNA-directed RNA polymerase p90; Short=p90 [Rubella virus strain TO-336] Sequence ID: Q99IE5.1 Length: 2116 Range 1: 834 to 942 Score:46.2 bits(108), Expect:3e-05, Method:Compositional matrix adjust., Identities:38/109(35%), Positives:49/109(44%), Gaps:10/109(9%) Query 17 EAVVNAANAKGTVGDGVCRAV-----ARKWPDSFKGAATPVGTAKLVQANG---MNVIHA 68 + VVNAAN G GVC A+ A D + A P G A +G ++IHA Sbjct 834 KVVVNAANEGLLAGSGVCGAIFANATAALAADCRRLAPCPTGEAVATPGHGCGYTHIIHA 893 Query 69 VGPNFSTVTEA--EGDRELAAAYRAVAGIINASNIKSVAIPLLSTGVFS 115 V P A EG+ L AYR++ + A VA PLL GV+ Sbjct 894 VAPRRPRDPAALEEGEALLERAYRSIVALAAARRWACVACPLLGAGVYG 942 >RecName: Full=Non-structural polyprotein p200; Short=p200; Contains: RecName: Full=Protease/methyltransferase p150; Short=p150; Contains: RecName: Full=RNA-directed RNA polymerase p90; Short=p90 [Rubella virus strain Cendehill] Sequence ID: Q9J6K9.2 Length: 2116 Range 1: 836 to 942 Score:45.8 bits(107), Expect:4e-05, Method:Compositional matrix adjust., Identities:38/107(36%), Positives:48/107(44%), Gaps:10/107(9%) Query 19 VVNAANAKGTVGDGVCRAV-----ARKWPDSFKGAATPVGTAKLVQANG---MNVIHAVG 70 VVNAAN G GVC A+ A D + A P G A +G ++IHAV Sbjct 836 VVNAANEGLLAGSGVCGAIFANATAALAADCRRLAPCPTGEAVATPGHGCGYTHIIHAVA 895 Query 71 PNFSTVTEA--EGDRELAAAYRAVAGIINASNIKSVAIPLLSTGVFS 115 P A EG+ L AYR++ + A VA PLL GV+ Sbjct 896 PRRPRDPAALEEGEALLERAYRSIVALAAARRWAYVACPLLGAGVYG 942 >RecName: Full=Non-structural polyprotein pORF1; Includes: RecName: Full=Methyltransferase; Includes: RecName: Full=Putative papain-like cysteine protease; Short=PLP; Includes: RecName: Full=NTPase/helicase; Includes: RecName: Full=RNA-directed RNA polymerase; Short=RdRp [Hepatitis E virus (strain Mexico)] Sequence ID: Q03495.1 Length: 1691 Range 1: 801 to 889 Score:44.3 bits(103), Expect:1e-04, Method:Compositional matrix adjust., Identities:31/104(30%), Positives:47/104(45%), Gaps:23/104(22%) Query 19 VVNAANAKGTVGDGVCRAVARKWPDSFKGAATPVGTAKLVQANGMN--------VIHAVG 70 +VNA+NA G G+C A +++PDSF K V +G+ +IHAV Sbjct 801 LVNASNAGHRPGGGLCHAFFQRYPDSFD-------ATKFVMRDGLAAYTLTPRPIIHAVA 853 Query 71 PNFSTVTEAEGDRELAAAYRAVAGIINASNIKSVAIPLLSTGVF 114 P++ + L AAYR + + A PLL G++ Sbjct 854 PDYRL---EHNPKRLEAAYRE-----TCARRGTAAYPLLGAGIY 889 >RecName: Full=Non-structural polyprotein p200; Short=p200; Contains: RecName: Full=Protease/methyltransferase p150; Short=p150; Contains: RecName: Full=RNA-directed RNA polymerase p90; Short=p90 [Rubella virus strain Therien] Sequence ID: P13889.5 Length: 2116 Range 1: 834 to 942 Score:43.9 bits(102), Expect:2e-04, Method:Compositional matrix adjust., Identities:37/109(34%), Positives:49/109(44%), Gaps:10/109(9%) Query 17 EAVVNAANAKGTVGDGVCRAV-----ARKWPDSFKGAATPVGTAKLVQANG---MNVIHA 68 + VVNAAN G GVC A+ A + + A P G A +G ++IHA Sbjct 834 KVVVNAANEGLLAGSGVCGAIFANATAALAANCRRLAPCPTGEAVATPGHGCGYTHIIHA 893 Query 69 VGPNFSTVTEA--EGDRELAAAYRAVAGIINASNIKSVAIPLLSTGVFS 115 V P A EG+ L AYR++ + A VA PLL GV+ Sbjct 894 VAPRRPRDPAALEEGEALLERAYRSIVALAAARRWACVACPLLGAGVYG 942 >RecName: Full=Non-structural polyprotein pORF1; Includes: RecName: Full=Methyltransferase; Includes: RecName: Full=Putative papain-like cysteine protease; Short=PLP; Includes: RecName: Full=NTPase/helicase; Includes: RecName: Full=RNA-directed RNA polymerase; Short=RdRp [Hepatitis E virus (strain Pakistan)] Sequence ID: P33424.2 Length: 1693 Range 1: 803 to 891 Score:43.5 bits(101), Expect:2e-04, Method:Compositional matrix adjust., Identities:30/97(31%), Positives:46/97(47%), Gaps:9/97(9%) Query 19 VVNAANAKGTVGDGVCRAVARKWPDSFKGAATPV-GTAKLVQANGMNVIHAVGPNFSTVT 77 +VNA+N G G+C A +++P SF A+ + A +IHAV P++ Sbjct 803 LVNASNVDHRPGGGLCHAFYQRYPASFDAASFVMRDGAAAYTLTPRPIIHAVAPDYRL-- 860 Query 78 EAEGDRELAAAYRAVAGIINASNIKSVAIPLLSTGVF 114 + L AAYR S + + A PLL TG++ Sbjct 861 -EHNPKRLEAAYRE-----TCSRLGTAAYPLLGTGIY 891 >RecName: Full=Non-structural polyprotein pORF1; Includes: RecName: Full=Methyltransferase; Includes: RecName: Full=Putative papain-like cysteine protease; Short=PLP; Includes: RecName: Full=NTPase/helicase; Includes: RecName: Full=RNA-directed RNA polymerase; Short=RdRp [Hepatitis E virus (strain Burma)] Sequence ID: P29324.1 Length: 1693 Range 1: 803 to 891 Score:43.5 bits(101), Expect:2e-04, Method:Compositional matrix adjust., Identities:30/97(31%), Positives:46/97(47%), Gaps:9/97(9%) Query 19 VVNAANAKGTVGDGVCRAVARKWPDSFKGAATPV-GTAKLVQANGMNVIHAVGPNFSTVT 77 +VNA+N G G+C A +++P SF A+ + A +IHAV P++ Sbjct 803 LVNASNVDHRPGGGLCHAFYQRYPASFDAASFVMRDGAAAYTLTPRPIIHAVAPDYRL-- 860 Query 78 EAEGDRELAAAYRAVAGIINASNIKSVAIPLLSTGVF 114 + L AAYR S + + A PLL TG++ Sbjct 861 -EHNPKRLEAAYRE-----TCSRLGTAAYPLLGTGIY 891 >RecName: Full=Non-structural polyprotein p200; Short=p200; Contains: RecName: Full=Protease/methyltransferase p150; Short=p150; Contains: RecName: Full=RNA-directed RNA polymerase p90; Short=p90 [Rubella virus strain BRD1] Sequence ID: Q6X2U4.1 Length: 2116 Range 1: 836 to 942 Score:43.1 bits(100), Expect:2e-04, Method:Compositional matrix adjust., Identities:37/107(35%), Positives:46/107(42%), Gaps:10/107(9%) Query 19 VVNAANAKGTVGDGVCRAV-----ARKWPDSFKGAATPVGTAKLVQANG---MNVIHAVG 70 VVNAAN G GVC A+ A D + A P G A +G ++IHAV Sbjct 836 VVNAANEGLLAGSGVCGAIFASAAATLAEDCRRLAPCPTGEAVATPGHGCGYTHIIHAVA 895 Query 71 PNFSTVTEAEGDRE--LAAAYRAVAGIINASNIKSVAIPLLSTGVFS 115 P A E L AYR+V + A VA PLL G++ Sbjct 896 PRRPQDPAALEQSEALLERAYRSVVALAAARRWACVACPLLGAGIYG 942 >RecName: Full=Non-structural polyprotein p200; Short=p200; Contains: RecName: Full=Protease/methyltransferase p150; Short=p150; Contains: RecName: Full=RNA-directed RNA polymerase p90; Short=p90 [Rubella virus strain BRDII] Sequence ID: Q6X2U2.1 Length: 2116 Range 1: 834 to 942 Score:43.1 bits(100), Expect:3e-04, Method:Compositional matrix adjust., Identities:36/109(33%), Positives:47/109(43%), Gaps:10/109(9%) Query 17 EAVVNAANAKGTVGDGVCRAV-----ARKWPDSFKGAATPVGTAKLVQANGM---NVIHA 68 + VVNAAN G GVC A+ A D + A P G A +G ++IHA Sbjct 834 KVVVNAANEGLLAGSGVCGAIFASAAASLAEDCRRLAPCPTGEAVATPGHGCGYAHIIHA 893 Query 69 VGPNFSTVTEAEGDRE--LAAAYRAVAGIINASNIKSVAIPLLSTGVFS 115 V P A E L AYR++ + A VA PLL G++ Sbjct 894 VAPRRPQDPAALEQSEALLERAYRSIVALAAARRWTCVACPLLGAGIYG 942 >RecName: Full=Non-structural polyprotein pORF1; Includes: RecName: Full=Methyltransferase; Includes: RecName: Full=Papain-like cysteine protease; Short=PLP; Includes: RecName: Full=NTPase/helicase; Includes: RecName: Full=RNA-directed RNA polymerase; Short=RdRp [Hepatitis E virus isolate Hetian] Sequence ID: Q81862.1 Length: 1693 Range 1: 803 to 891 Score:42.7 bits(99), Expect:3e-04, Method:Compositional matrix adjust., Identities:30/97(31%), Positives:46/97(47%), Gaps:9/97(9%) Query 19 VVNAANAKGTVGDGVCRAVARKWPDSFKGAATPV-GTAKLVQANGMNVIHAVGPNFSTVT 77 +VNA+N G G+C A +++P SF A+ + A +IHAV P++ Sbjct 803 LVNASNVDHRPGGGLCHAFYQRYPASFDAASFVMRDGAAAYTLTPRPIIHAVAPDYRL-- 860 Query 78 EAEGDRELAAAYRAVAGIINASNIKSVAIPLLSTGVF 114 + L AAYR S + + A PLL TG++ Sbjct 861 -EHNPKMLEAAYRE-----TCSRLGTAAYPLLGTGIY 891 >RecName: Full=Replicase polyprotein 1a; Short=pp1a; AltName: Full=ORF1a polyprotein; Contains: RecName: Full=Non-structural protein 1; Short=nsp1; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; Contains: RecName: Full=3C-like serine proteinase; Short=3CLSP; AltName: Full=M-PRO; AltName: Full=nsp3; AltName: Full=p27; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; Contains: RecName: Full=Non-structural protein 5; Short=nsp5; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; Contains: RecName: Full=Non-structural protein 9; Short=nsp9 [Berne virus] Sequence ID: P0C6F3.1 Length: 4569 Range 1: 1715 to 1843 Score:42.0 bits(97), Expect:6e-04, Method:Composition-based stats., Identities:35/139(25%), Positives:66/139(47%), Gaps:25/139(17%) Query 19 VVNAANAKGTVGDGVCRAVA-------RKWPDSFKGAATPVGTAKLVQANG------MNV 65 VVN AN++ G G+ + ++ + W +++ V K +++ G +N+ Sbjct 1715 VVNPANSQLKHGGGIAKVISCMCGPKLQAWSNNYITKNKTVPVTKAIKSPGFQLGKKVNI 1774 Query 66 IHAVGPNFSTVTEAEGD--RELAAAYRAVAGIINASNIKSVAIPLLSTGVFSGGKDRVMQ 123 IHAVGP S +GD ++L A+R+V + + ++ +LSTG+F V Sbjct 1775 IHAVGPRVS-----DGDVFQKLDQAWRSVFDL--CEDQHTILTSMLSTGIFGC---TVND 1824 Query 124 SLNHLFTAMDTTDADVVIY 142 S N + + D +V++ Sbjct 1825 SFNTFLSNVARLDKSLVVF 1843 >RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Non-structural protein 1; Short=nsp1; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; Contains: RecName: Full=3C-like serine proteinase; Short=3CLSP; AltName: Full=M-PRO; AltName: Full=nsp3; AltName: Full=p27; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; Contains: RecName: Full=Non-structural protein 5; Short=nsp5; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; Contains: RecName: Full=RNA-directed RNA polymerase; Short=Pol; Short=RdRp; AltName: Full=nsp10; AltName: Full=p100; Contains: RecName: Full=Helicase; Short=Hel; AltName: Full=nsp11; AltName: Full=p67; Contains: RecName: Full=Exoribonuclease; Short=ExoN; AltName: Full=nsp12; Contains: RecName: Full=Non-structural protein 13; Short=nsp13; Contains: RecName: Full=Uridylate-specific endoribonuclease; AltName: Full=NendoU; AltName: Full=nsp14; Contains: RecName: Full=Putative 2'-O-methyl transferase; AltName: Full=nsp15 [Berne virus] Sequence ID: P0C6V7.1 Length: 6857 Range 1: 1715 to 1843 Score:42.0 bits(97), Expect:6e-04, Method:Composition-based stats., Identities:35/139(25%), Positives:66/139(47%), Gaps:25/139(17%) Query 19 VVNAANAKGTVGDGVCRAVA-------RKWPDSFKGAATPVGTAKLVQANG------MNV 65 VVN AN++ G G+ + ++ + W +++ V K +++ G +N+ Sbjct 1715 VVNPANSQLKHGGGIAKVISCMCGPKLQAWSNNYITKNKTVPVTKAIKSPGFQLGKKVNI 1774 Query 66 IHAVGPNFSTVTEAEGD--RELAAAYRAVAGIINASNIKSVAIPLLSTGVFSGGKDRVMQ 123 IHAVGP S +GD ++L A+R+V + + ++ +LSTG+F V Sbjct 1775 IHAVGPRVS-----DGDVFQKLDQAWRSVFDL--CEDQHTILTSMLSTGIFGC---TVND 1824 Query 124 SLNHLFTAMDTTDADVVIY 142 S N + + D +V++ Sbjct 1825 SFNTFLSNVARLDKSLVVF 1843 >RecName: Full=Non-structural polyprotein pORF1; Includes: RecName: Full=Methyltransferase; Includes: RecName: Full=Putative papain-like cysteine protease; Short=PLP; Includes: RecName: Full=NTPase/helicase; Includes: RecName: Full=RNA-directed RNA polymerase; Short=RdRp [Avian hepatitis E virus chicken/United States/Meng] Sequence ID: Q6QLN1.1 Length: 1531 Range 1: 636 to 730 Score:42.0 bits(97), Expect:6e-04, Method:Compositional matrix adjust., Identities:30/103(29%), Positives:47/103(45%), Gaps:11/103(10%) Query 15 AEEAVVNAANAKGTVGDGVCRAVARKWPDSFK--GAATPVGTAKLVQANG-MNVIHAVGP 71 A + +VN AN G G+C R+WP + G + T ++ G VIHA GP Sbjct 636 AADWLVNPANRDHQPGGGLCGMFHRRWPHLWPVCGEVQDLPTGPVIFQQGPPKVIHAPGP 695 Query 72 NFSTVTEAEGDRELAAAYRAVAGIINASNIKSVAIPLLSTGVF 114 ++ + +G R + A G +VA PL+S G++ Sbjct 696 DYRIKPDPDGLRRVYAVVHQAHG--------TVASPLISAGIY 730 >RecName: Full=Non-structural polyprotein pORF1; Includes: RecName: Full=Methyltransferase; Includes: RecName: Full=Putative papain-like cysteine protease; Short=PLP; Includes: RecName: Full=NTPase/helicase; Includes: RecName: Full=RNA-directed RNA polymerase; Short=RdRp [Hepatitis E virus human/g1/India/Hyderabad] Sequence ID: Q9WC28.1 Length: 1693 Range 1: 803 to 891 Score:41.6 bits(96), Expect:8e-04, Method:Compositional matrix adjust., Identities:29/97(30%), Positives:44/97(45%), Gaps:9/97(9%) Query 19 VVNAANAKGTVGDGVCRAVARKWPDSFKGAATPV-GTAKLVQANGMNVIHAVGPNFSTVT 77 +VNA+N G G+C A +++P SF A + A +IH V P++ Sbjct 803 LVNASNVDHCPGGGLCHAFYQRYPASFDAACFVMRDGAAAYTLTPRPIIHRVAPDYRL-- 860 Query 78 EAEGDRELAAAYRAVAGIINASNIKSVAIPLLSTGVF 114 + L AAYR S + + A PLL TG++ Sbjct 861 -EHNPKRLEAAYRE-----TCSRLGTAAYPLLGTGIY 891 >RecName: Full=Non-structural polyprotein p200; Short=p200; Contains: RecName: Full=Protease/methyltransferase p150; Short=p150; Contains: RecName: Full=RNA-directed RNA polymerase p90; Short=p90 [Rubella virus strain M33] Sequence ID: Q86500.2 Length: 2116 Range 1: 834 to 942 Score:41.2 bits(95), Expect:0.001, Method:Compositional matrix adjust., Identities:38/109(35%), Positives:50/109(45%), Gaps:10/109(9%) Query 17 EAVVNAANAKGTVGDGVCRAV-----ARKWPDSFKGAATPVGTAKLVQANG---MNVIHA 68 + VVNAAN G GVC A+ A D + A P+G A +G ++IHA Sbjct 834 KVVVNAANEGLLAGSGVCGAIFANATAALAADCRRLAPCPIGEAVATPGHGCGYTHIIHA 893 Query 69 VGPNFSTVTEA--EGDRELAAAYRAVAGIINASNIKSVAIPLLSTGVFS 115 V P A EG+ L AYR++ + A VA PLL GV+ Sbjct 894 VAPRRPRDPAALEEGEALLERAYRSIVALAAARRWARVACPLLGAGVYG 942 >RecName: Full=Non-structural polyprotein pORF1; Includes: RecName: Full=Methyltransferase; Includes: RecName: Full=Putative papain-like cysteine protease; Short=PLP; Includes: RecName: Full=NTPase/helicase; Includes: RecName: Full=RNA-directed RNA polymerase; Short=RdRp [Hepatitis E virus Ct1] Sequence ID: Q9IVZ9.1 Length: 1707 Range 1: 817 to 905 Score:40.8 bits(94), Expect:0.001, Method:Compositional matrix adjust., Identities:29/104(28%), Positives:47/104(45%), Gaps:23/104(22%) Query 19 VVNAANAKGTVGDGVCRAVARKWPDSFKGAATPVGTAKLVQANGMN--------VIHAVG 70 +VNA+N G G+C A +++P+SF A+ + ++G +IHAV Sbjct 817 LVNASNPGHRPGGGLCHAFYQRFPESFD-------PAEFIMSDGFAAYTLTPRPIIHAVA 869 Query 71 PNFSTVTEAEGDRELAAAYRAVAGIINASNIKSVAIPLLSTGVF 114 P++ + L AAYR S + A PLL G++ Sbjct 870 PDYRV---EHNPKRLEAAYRE-----TCSRRGTAAYPLLGVGIY 905 >RecName: Full=Non-structural polyprotein pORF1; Includes: RecName: Full=Methyltransferase; Includes: RecName: Full=Putative papain-like cysteine protease; Short=PLP; Includes: RecName: Full=NTPase/helicase; Includes: RecName: Full=RNA-directed RNA polymerase; Short=RdRp [Hepatitis E virus (strain Myanmar)] Sequence ID: Q04610.1 Length: 1693 Range 1: 803 to 891 Score:40.4 bits(93), Expect:0.002, Method:Compositional matrix adjust., Identities:29/97(30%), Positives:45/97(46%), Gaps:9/97(9%) Query 19 VVNAANAKGTVGDGVCRAVARKWPDSFKGAATPV-GTAKLVQANGMNVIHAVGPNFSTVT 77 +VNA+N G G+C A +++P SF A+ + A +IHAV P++ Sbjct 803 LVNASNVDHRPGGGLCHAFYQRYPASFDAASFVMRDGAAAYTLTPRPIIHAVAPDYRL-- 860 Query 78 EAEGDRELAAAYRAVAGIINASNIKSVAIPLLSTGVF 114 + L AAYR S + + A LL TG++ Sbjct 861 -EHNPKRLEAAYRE-----TCSRLGTAAYSLLGTGIY 891 >RecName: Full=Non-structural polyprotein p200; Short=p200; Contains: RecName: Full=Protease/methyltransferase p150; Short=p150; Contains: RecName: Full=RNA-directed RNA polymerase p90; Short=p90 [Rubella virus vaccine strain RA27/3] Sequence ID: O40955.1 Length: 2116 Range 1: 834 to 942 Score:40.0 bits(92), Expect:0.003, Method:Compositional matrix adjust., Identities:38/109(35%), Positives:49/109(44%), Gaps:10/109(9%) Query 17 EAVVNAANAKGTVGDGVCRAV-----ARKWPDSFKGAATPVGTAKLVQANG---MNVIHA 68 + VVNAAN G GVC A+ A D + A P G A +G ++IHA Sbjct 834 KVVVNAANEGLLAGSGVCGAIFANATAALAADCRRLAPCPTGEAVATPGHGCGYTHIIHA 893 Query 69 VGPNFSTVTEA--EGDRELAAAYRAVAGIINASNIKSVAIPLLSTGVFS 115 V P A EG+ L AYR++ + A VA PLL GV+ Sbjct 894 VAPRRPRDPAALEEGEALLERAYRSIVALAAARRWARVACPLLGAGVYG 942 >RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Non-structural protein 1; Short=nsp1; AltName: Full=p9; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p87; Contains: RecName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=PL1-PRO/PL2-PRO; AltName: Full=PLP1/PLP2; AltName: Full=Papain-like proteinases 1/2; AltName: Full=p195; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; AltName: Full=Peptide HD2; Contains: RecName: Full=3C-like proteinase; Short=3CL-PRO; Short=3CLp; AltName: Full=M-PRO; AltName: Full=nsp5; AltName: Full=p34; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; AltName: Full=p5; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; AltName: Full=p23; Contains: RecName: Full=Non-structural protein 9; Short=nsp9; AltName: Full=p12; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; AltName: Full=p14; Contains: RecName: Full=RNA-directed RNA polymerase; Short=Pol; Short=RdRp; AltName: Full=nsp12; AltName: Full=p100; Contains: RecName: Full=Helicase; Short=Hel; AltName: Full=nsp13; AltName: Full=p66; AltName: Full=p66-HEL; Contains: RecName: Full=Exoribonuclease; Short=ExoN; AltName: Full=nsp14; Contains: RecName: Full=Uridylate-specific endoribonuclease; AltName: Full=NendoU; AltName: Full=nsp15; Contains: RecName: Full=Putative 2'-O-methyl transferase; AltName: Full=nsp16 [Porcine epidemic diarrhea virus CV777] Sequence ID: P0C6Y4.1 Length: 6781 Range 1: 1315 to 1413 Score:38.1 bits(87), Expect:0.010, Method:Compositional matrix adjust., Identities:32/108(30%), Positives:50/108(46%), Gaps:18/108(16%) Query 17 EAVVNAANAKGTVGDGVCRAV-------ARKWPDSFKGAATP--VGTAKLVQANGMNVIH 67 + VVNAAN K + G G+ +A+ +K + + A P VG +++A G+ V + Sbjct 1315 DFVVNAANEKLSHGGGIAKAIDVYTKGMLQKCSNDYIKAHGPIKVGRGVMLEALGLKVFN 1374 Query 68 AVGPNFSTVTEAEGDRELAAAYRAVAGIINASNIKSVAIPLLSTGVFS 115 VGP L AY++V +N PL+S G+FS Sbjct 1375 VVGPR----KGKHAPELLVKAYKSV-----FANSGVALTPLISVGIFS 1413 >RecName: Full=Replicase polyprotein 1a; Short=pp1a; AltName: Full=ORF1a polyprotein; Contains: RecName: Full=Non-structural protein 1; Short=nsp1; AltName: Full=p9; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p87; Contains: RecName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=PL1-PRO/PL2-PRO; AltName: Full=PLP1/PLP2; AltName: Full=Papain-like proteinases 1/2; AltName: Full=p195; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; AltName: Full=Peptide HD2; Contains: RecName: Full=3C-like proteinase; Short=3CL-PRO; Short=3CLp; AltName: Full=M-PRO; AltName: Full=nsp5; AltName: Full=p34; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; AltName: Full=p5; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; AltName: Full=p23; Contains: RecName: Full=Non-structural protein 9; Short=nsp9; AltName: Full=p12; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; AltName: Full=p14; Contains: RecName: Full=Non-structural protein 11; Short=nsp11 [Porcine epidemic diarrhea virus CV777] Sequence ID: P0C6V6.1 Length: 4117 Range 1: 1315 to 1413 Score:37.7 bits(86), Expect:0.013, Method:Compositional matrix adjust., Identities:32/108(30%), Positives:50/108(46%), Gaps:18/108(16%) Query 17 EAVVNAANAKGTVGDGVCRAV-------ARKWPDSFKGAATP--VGTAKLVQANGMNVIH 67 + VVNAAN K + G G+ +A+ +K + + A P VG +++A G+ V + Sbjct 1315 DFVVNAANEKLSHGGGIAKAIDVYTKGMLQKCSNDYIKAHGPIKVGRGVMLEALGLKVFN 1374 Query 68 AVGPNFSTVTEAEGDRELAAAYRAVAGIINASNIKSVAIPLLSTGVFS 115 VGP L AY++V +N PL+S G+FS Sbjct 1375 VVGPR----KGKHAPELLVKAYKSV-----FANSGVALTPLISVGIFS 1413 >RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Host translation inhibitor nsp1; Short=nsp1; AltName: Full=Leader protein; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p65 homolog; Contains: RecName: Full=Papain-like proteinase; Short=PL-PRO; AltName: Full=Non-structural protein 3; Short=nsp3; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; Contains: RecName: Full=3C-like proteinase; Short=3CL-PRO; Short=3CLp; AltName: Full=nsp5; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; Contains: RecName: Full=Non-structural protein 9; Short=nsp9; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; Contains: RecName: Full=RNA-directed RNA polymerase; Short=Pol; Short=RdRp; AltName: Full=nsp12; Contains: RecName: Full=Helicase; Short=Hel; AltName: Full=nsp13; Contains: RecName: Full=Guanine-N7 methyltransferase; Short=ExoN; AltName: Full=nsp14; Contains: RecName: Full=Uridylate-specific endoribonuclease; AltName: Full=NendoU; AltName: Full=nsp15; Contains: RecName: Full=2'-O-methyltransferase; AltName: Full=nsp16 [Betacoronavirus England 1] Sequence ID: K9N7C7.1 Length: 7078 Range 1: 1137 to 1239 Score:37.7 bits(86), Expect:0.014, Method:Compositional matrix adjust., Identities:35/113(31%), Positives:55/113(48%), Gaps:22/113(19%) Query 14 HAEEAVVNAANAKGTVGDGVCRAV-------ARKWPDSFKGAATP--VGTAKLVQANGM- 63 + E +VNAAN G G+ A+ +K D + A P VG + L+Q + + Sbjct 1137 YGESVLVNAANTHLKHGGGIAGAINAASKGAVQKESDEYILAKGPLQVGDSVLLQGHSLA 1196 Query 64 -NVIHAVGPNFSTVTEAEGDRE-LAAAYRAVAGIINASNIKSVAIPLLSTGVF 114 N++H VGP+ A+ D L+ Y+A +NA + V PL+S G+F Sbjct 1197 KNILHVVGPD----ARAKQDVSLLSKCYKA----MNAYPL--VVTPLVSAGIF 1239 >RecName: Full=Replicase polyprotein 1a; Short=pp1a; AltName: Full=ORF1a polyprotein; Contains: RecName: Full=Host translation inhibitor nsp1; Short=nsp1; AltName: Full=Leader protein; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p65 homolog; Contains: RecName: Full=Papain-like proteinase; Short=PL-PRO; AltName: Full=Non-structural protein 3; Short=nsp3; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; Contains: RecName: Full=3C-like proteinase; Short=3CL-PRO; Short=3CLp; AltName: Full=nsp5; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; Contains: RecName: Full=Non-structural protein 9; Short=nsp9; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; Contains: RecName: Full=Non-structural protein 11; Short=nsp11 [Betacoronavirus England 1] Sequence ID: K9N638.1 Length: 4391 Range 1: 1137 to 1239 Score:37.7 bits(86), Expect:0.014, Method:Compositional matrix adjust., Identities:35/113(31%), Positives:55/113(48%), Gaps:22/113(19%) Query 14 HAEEAVVNAANAKGTVGDGVCRAV-------ARKWPDSFKGAATP--VGTAKLVQANGM- 63 + E +VNAAN G G+ A+ +K D + A P VG + L+Q + + Sbjct 1137 YGESVLVNAANTHLKHGGGIAGAINAASKGAVQKESDEYILAKGPLQVGDSVLLQGHSLA 1196 Query 64 -NVIHAVGPNFSTVTEAEGDRE-LAAAYRAVAGIINASNIKSVAIPLLSTGVF 114 N++H VGP+ A+ D L+ Y+A +NA + V PL+S G+F Sbjct 1197 KNILHVVGPD----ARAKQDVSLLSKCYKA----MNAYPL--VVTPLVSAGIF 1239