BLASTP 2.2.28+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.


Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.



Database: all.fasta
           24,267 sequences; 7,649,153 total letters



Query= sp|P50866|CLPX_BACSU ATP-dependent Clp protease ATP-binding subunit
ClpX OS=Bacillus subtilis (strain 168) OX=224308 GN=clpX PE=2 SV=3

Length=420
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  sp|Q92QQ2|CLPX_RHIME ATP-dependent Clp protease ATP-binding sub...   541    0.0   
  sp|Q5P160|CLPX_AROAE ATP-dependent Clp protease ATP-binding sub...   537    0.0   
  sp|A5FX05|CLPX_ACICJ ATP-dependent Clp protease ATP-binding sub...   534    0.0   
  sp|Q165G0|CLPX_ROSDO ATP-dependent Clp protease ATP-binding sub...   533    0.0   
  sp|A4SXD7|CLPX_POLAQ ATP-dependent Clp protease ATP-binding sub...   530    0.0   
  sp|P57981|CLPX_PASMU ATP-dependent Clp protease ATP-binding sub...   527    0.0   
  sp|Q9JTX8|CLPX_NEIMA ATP-dependent Clp protease ATP-binding sub...   499    5e-175
  sp|Q92TA7|HSLU_RHIME ATP-dependent protease ATPase subunit HslU...  91.7    3e-20 
  sp|Q16CY2|HSLU_ROSDO ATP-dependent protease ATPase subunit HslU...  89.7    1e-19 
  sp|Q5P503|HSLU_AROAE ATP-dependent protease ATPase subunit HslU...  89.0    2e-19 
  sp|P57968|HSLU_PASMU ATP-dependent protease ATPase subunit HslU...  87.0    1e-18 
  tr|A5FYD7|A5FYD7_ACICJ ATP-dependent protease ATPase subunit Hs...  84.3    8e-18 
  tr|A4SZP7|A4SZP7_POLAQ ATP-dependent Clp protease ATP-binding s...  57.4    6e-09 
  tr|Q162S2|Q162S2_ROSDO ATP-dependent Clp protease, ATP-binding ...  53.5    1e-07 
  tr|Q5P202|Q5P202_AROAE Probable ATP-dependent protease OS=Aroma...  52.4    2e-07 
  tr|A5G1K5|A5G1K5_ACICJ ATP-dependent Clp protease, ATP-binding ...  49.3    2e-06 
  tr|Q92M98|Q92M98_RHIME ATP-dependent zinc metalloprotease FtsH ...  47.0    9e-06 
  tr|A5FVF9|A5FVF9_ACICJ ATP-dependent zinc metalloprotease FtsH ...  45.1    4e-05 
  tr|A0A0U1RIC9|A0A0U1RIC9_NEIMA Putative ATP-dependent protease ...  44.7    5e-05 
  tr|Q9CNJ2|Q9CNJ2_PASMU ATP-dependent zinc metalloprotease FtsH ...  43.1    1e-04 
  tr|A4SXL5|A4SXL5_POLAQ ATP-dependent zinc metalloprotease FtsH ...  41.6    4e-04 
  tr|Q167Z2|Q167Z2_ROSDO ATP-dependent zinc metalloprotease FtsH ...  41.2    6e-04 
  tr|Q92Q87|Q92Q87_RHIME Probable nitrogen regulation protein OS=...  40.4    0.001 


> sp|Q92QQ2|CLPX_RHIME ATP-dependent Clp protease ATP-binding subunit 
ClpX OS=Rhizobium meliloti (strain 1021) OX=266834 GN=clpX 
PE=3 SV=1
Length=425

 Score =  541 bits (1395),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 263/415 (63%), Positives = 338/415 (81%), Gaps = 4/415 (1%)

Query  6    EEKGQLKCSFCGKTQDQVRKLVAGPGVYICDECIELCTEIVEEELGTEEEVEFKDVPKPQ  65
            + K  L CSFCGK+Q +VRKL+AGP V+ICDEC+ELC +I+ EE  T        VP PQ
Sbjct  11   DSKNTLYCSFCGKSQHEVRKLIAGPTVFICDECVELCMDIIREENKTSMVKSRDGVPTPQ  70

Query  66   EIREILNEYVIGQDQAKKSLAVAVYNHYKRINSNSKVDDVELSKSNISLIGPTGSGKTLL  125
            EI ++L+EYVIGQ QAK+ L+VAV+NHYKR+   +K  DVEL+KSNI L+GPTG GKT L
Sbjct  71   EIIKVLDEYVIGQQQAKRILSVAVHNHYKRLAHAAKSSDVELAKSNIMLVGPTGCGKTYL  130

Query  126  AQTLARILNVPFAIADATSLTEAGYVGEDVENILLKLIQAADYDVEKAEKGIIYIDEIDK  185
            AQTLARI++VPF +ADAT+LTEAGYVGEDVENI+LKL+QAADY+VE+A++GI+YIDE+DK
Sbjct  131  AQTLARIIDVPFTMADATTLTEAGYVGEDVENIILKLLQAADYNVERAQRGIVYIDEVDK  190

Query  186  VARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQEFIQIDTTNILFICG  245
            ++RKS+NPSITRDVSGEGVQQALLKI+EGTVASVPPQGGRKHP QEF+Q+DTTNILFICG
Sbjct  191  ISRKSDNPSITRDVSGEGVQQALLKIMEGTVASVPPQGGRKHPQQEFLQVDTTNILFICG  250

Query  246  GAFDGIEQIIKRRLGQKVIGFGADNKAA-DLEKEDLLSKVLPEDLLRFGLIPEFIGRLPV  304
            GAF G+++II  R  +  IGFGA  +A  D    ++L ++ PEDL++FGLIPEFIGRLPV
Sbjct  251  GAFAGLDKIISARGEKTSIGFGATVRAPEDRRVGEVLRELEPEDLVKFGLIPEFIGRLPV  310

Query  305  IASLEKLDEEALVAILTKPKNALVKQFKKMLELDNVELEFEEEALSEIAKKAIERKTGAR  364
            +A+LE LDE+AL+ IL++PKNALVKQ++++ E+++VEL F E+AL EIA++AI RKTGAR
Sbjct  311  LATLEDLDEDALIQILSEPKNALVKQYQRLFEMEDVELNFHEDALREIARRAIVRKTGAR  370

Query  365  GLRSIIEGIMLDVMFELPSRDDIEKCVITGATVTHGEPPRLLLKDGTEVSQDKTS  419
            GLRSI+E I+LD MFELP+ + + + VI+   V     P  +    +E S++KT+
Sbjct  371  GLRSIMEKILLDTMFELPTLEGVREVVISDEVVKGTARPLYIY---SERSEEKTN  422


> sp|Q5P160|CLPX_AROAE ATP-dependent Clp protease ATP-binding subunit 
ClpX OS=Aromatoleum aromaticum (strain EbN1) OX=76114 
GN=clpX PE=3 SV=1
Length=422

 Score =  537 bits (1383),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 260/408 (64%), Positives = 335/408 (82%), Gaps = 4/408 (1%)

Query  11   LKCSFCGKTQDQVRKLVAGPGVYICDECIELCTEIVEEELG--TEEEVEFKDVPKPQEIR  68
            L CSFCGK+Q +VRKL+AGP V+ICDECIELC +I+ +E+    + E     +P PQEI 
Sbjct  12   LYCSFCGKSQHEVRKLIAGPSVFICDECIELCNDIIRDEIAETVDAEGTRTTLPTPQEIC  71

Query  69   EILNEYVIGQDQAKKSLAVAVYNHYKRINSNS-KVDDVELSKSNISLIGPTGSGKTLLAQ  127
            EILN+YVIGQ QAK++L+VAVYNHYKR+   S + ++VELSKSNI LIGPTGSGKTLLAQ
Sbjct  72   EILNQYVIGQTQAKRNLSVAVYNHYKRLRHLSGRKEEVELSKSNILLIGPTGSGKTLLAQ  131

Query  128  TLARILNVPFAIADATSLTEAGYVGEDVENILLKLIQAADYDVEKAEKGIIYIDEIDKVA  187
            TLAR+LNVPF +ADAT+LTEAGYVGEDVENI+ KL+Q  DYDV+KA+ GI+YIDEIDK++
Sbjct  132  TLARLLNVPFVMADATTLTEAGYVGEDVENIIQKLLQKCDYDVDKAQHGIVYIDEIDKIS  191

Query  188  RKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQEFIQIDTTNILFICGGA  247
            RKS+NPSITRDVSGEGVQQALLK++EGTVAS+PPQGGRKHP+Q+FIQIDTTNILFICGGA
Sbjct  192  RKSDNPSITRDVSGEGVQQALLKLIEGTVASIPPQGGRKHPNQDFIQIDTTNILFICGGA  251

Query  248  FDGIEQIIKRRLGQKVIGFGADNKAADLEK-EDLLSKVLPEDLLRFGLIPEFIGRLPVIA  306
            FDG+E++I+ R  +  IGFGA+ K+ + +   +   +V PEDL++FGLIPEF+GRLPV+A
Sbjct  252  FDGLEKVIRNRTEKIGIGFGAEIKSREGKNVSESFRQVEPEDLIKFGLIPEFVGRLPVVA  311

Query  307  SLEKLDEEALVAILTKPKNALVKQFKKMLELDNVELEFEEEALSEIAKKAIERKTGARGL  366
            +L++LDEEAL+ IL +PKNALVKQ++K+  ++ V+LE    AL  +A+KAI RKTGARGL
Sbjct  312  TLQELDEEALIQILVEPKNALVKQYQKLFSMEGVDLEIRPAALHAVARKAIRRKTGARGL  371

Query  367  RSIIEGIMLDVMFELPSRDDIEKCVITGATVTHGEPPRLLLKDGTEVS  414
            RSI+E  +LD+M++LP+ + +EK V+   T+  G  P L+  +  +VS
Sbjct  372  RSILESALLDIMYDLPTLEGVEKVVVDEGTIEEGAQPLLMYAEQPKVS  419


> sp|A5FX05|CLPX_ACICJ ATP-dependent Clp protease ATP-binding subunit 
ClpX OS=Acidiphilium cryptum (strain JF-5) OX=349163 
GN=clpX PE=3 SV=1
Length=418

 Score =  534 bits (1376),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 256/393 (65%), Positives = 325/393 (83%), Gaps = 1/393 (0%)

Query  3    KFNEEKGQLKCSFCGKTQDQVRKLVAGPGVYICDECIELCTEIVEEELGTEEEVEFKDVP  62
            K  + K  L CSFCGK+Q +V KL+AGP V+IC+EC+ELC +I+ E+  T        VP
Sbjct  4    KSGDSKNTLYCSFCGKSQHEVVKLIAGPTVFICNECVELCMDIIREDNRTHLVKTRDGVP  63

Query  63   KPQEIREILNEYVIGQDQAKKSLAVAVYNHYKRINSNSKVDDVELSKSNISLIGPTGSGK  122
             P+EI ++L++YVIGQD AK+ L+VAV+NHYKR+    K +D+E++KSNI L+GPTGSGK
Sbjct  64   TPREICKVLDDYVIGQDHAKRILSVAVHNHYKRLAHAQKNNDIEIAKSNIMLVGPTGSGK  123

Query  123  TLLAQTLARILNVPFAIADATSLTEAGYVGEDVENILLKLIQAADYDVEKAEKGIIYIDE  182
            TLLAQTLARIL+VPF +ADAT+LTEAGYVGEDVENI+LKL+QAADY+VE+A++GI+YIDE
Sbjct  124  TLLAQTLARILDVPFTMADATTLTEAGYVGEDVENIILKLLQAADYNVERAQRGIVYIDE  183

Query  183  IDKVARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQEFIQIDTTNILF  242
            +DK++RKS+NPSITRDVSGEGVQQALLKI+EGTVASVPPQGGRKHP QEF+Q+DTTNILF
Sbjct  184  VDKISRKSDNPSITRDVSGEGVQQALLKIMEGTVASVPPQGGRKHPQQEFLQVDTTNILF  243

Query  243  ICGGAFDGIEQIIKRRLGQKVIGFGADNKAADLEKED-LLSKVLPEDLLRFGLIPEFIGR  301
            ICGGAF G+E+II +R     IGFGAD +    ++   +L +V PEDLL+FGLIPEFIGR
Sbjct  244  ICGGAFAGLEKIIAQRGKGSGIGFGADVRDPTEQRTGAILREVEPEDLLKFGLIPEFIGR  303

Query  302  LPVIASLEKLDEEALVAILTKPKNALVKQFKKMLELDNVELEFEEEALSEIAKKAIERKT  361
            LPV+A+LE LDE AL+ ILTKPKNALVKQ+ ++ E++ V+L F E+AL  +A +AI+RKT
Sbjct  304  LPVVATLEDLDEAALIEILTKPKNALVKQYGRLFEMEGVKLNFTEDALKVVAARAIQRKT  363

Query  362  GARGLRSIIEGIMLDVMFELPSRDDIEKCVITG  394
            GARGLRSI+E I+L+ MF+LP  D +E+ VI G
Sbjct  364  GARGLRSIMENILLETMFDLPGLDSVEEVVING  396


> sp|Q165G0|CLPX_ROSDO ATP-dependent Clp protease ATP-binding subunit 
ClpX OS=Roseobacter denitrificans (strain ATCC 33942 
/ OCh 114) OX=375451 GN=clpX PE=3 SV=1
Length=421

 Score =  533 bits (1373),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 254/406 (63%), Positives = 326/406 (80%), Gaps = 1/406 (0%)

Query  8    KGQLKCSFCGKTQDQVRKLVAGPGVYICDECIELCTEIVEEELGTEEEVEFKDVPKPQEI  67
            K  L CSFCGK+Q +VRKL+AGP V+ICDEC+ELC +I+ EE           VP P++I
Sbjct  10   KNTLYCSFCGKSQHEVRKLIAGPTVFICDECVELCMDIIREETKASGLKATDGVPTPKDI  69

Query  68   REILNEYVIGQDQAKKSLAVAVYNHYKRINSNSKVDDVELSKSNISLIGPTGSGKTLLAQ  127
              +L++YVIGQ  AK+ L+VAV+NHYKR+N   K  D+EL+KSNI LIGPTG GKTLLAQ
Sbjct  70   CAVLDDYVIGQAMAKRVLSVAVHNHYKRLNHAQKGGDIELAKSNILLIGPTGCGKTLLAQ  129

Query  128  TLARILNVPFAIADATSLTEAGYVGEDVENILLKLIQAADYDVEKAEKGIIYIDEIDKVA  187
            TLARIL+VPF +ADAT+LTEAGYVGEDVENI+LKL+Q+++Y+VE+A++GI+YIDE+DK+ 
Sbjct  130  TLARILDVPFTMADATTLTEAGYVGEDVENIILKLLQSSEYNVERAQRGIVYIDEVDKIT  189

Query  188  RKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQEFIQIDTTNILFICGGA  247
            RKSENPSITRDVSGEGVQQALLK++EGTVASVPPQGGRKHP QEF+Q+DTTNILFICGGA
Sbjct  190  RKSENPSITRDVSGEGVQQALLKLMEGTVASVPPQGGRKHPQQEFLQVDTTNILFICGGA  249

Query  248  FDGIEQIIKRRLGQKVIGFGADNKAADLEK-EDLLSKVLPEDLLRFGLIPEFIGRLPVIA  306
            F G+++II  R     +GFGAD +  D     ++ + + PEDLL+FGLIPEF+GRLPV+A
Sbjct  250  FAGLDKIIAARGKGSAMGFGADVRGNDDRGVGEIFTDLEPEDLLKFGLIPEFVGRLPVLA  309

Query  307  SLEKLDEEALVAILTKPKNALVKQFKKMLELDNVELEFEEEALSEIAKKAIERKTGARGL  366
            +LE LDE+ALV ILT+PKNALVKQ++++ EL++ EL F ++ALS IAK+AIERKTGARGL
Sbjct  310  TLEDLDEDALVTILTQPKNALVKQYQRLFELEDTELTFTDDALSAIAKRAIERKTGARGL  369

Query  367  RSIIEGIMLDVMFELPSRDDIEKCVITGATVTHGEPPRLLLKDGTE  412
            RSI+E I+LD MF+LP  + + + V+    V     P ++  D ++
Sbjct  370  RSILEDILLDTMFDLPGLESVTEVVVNEEAVNSDAAPLMIHADASK  415


> sp|A4SXD7|CLPX_POLAQ ATP-dependent Clp protease ATP-binding subunit 
ClpX OS=Polynucleobacter asymbioticus (strain DSM 18221 
/ CIP 109841 / QLW-P1DMWA-1) OX=312153 GN=clpX PE=3 SV=1
Length=453

 Score =  530 bits (1365),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 265/434 (61%), Positives = 336/434 (77%), Gaps = 30/434 (7%)

Query  5    NEEKGQLKCSFCGKTQDQVRKLVAGPGVYICDECIELCTEIVEEELGT-EEEVEFKDVPK  63
            N  +  L CSFCGK+Q +V+KL+AGP V+ICDECI+LCT+I++EE+    +E   + +P 
Sbjct  8    NSSEKVLYCSFCGKSQHEVKKLIAGPSVFICDECIDLCTDIIQEEIAKLPKEEGDESLPT  67

Query  64   PQEIREILNEYVIGQDQAKKSLAVAVYNHYKRINSNSK----------------------  101
            P EIR  L++YVIGQ+ AKK+LAVAVYNHYKR+    K                      
Sbjct  68   PHEIRGNLDQYVIGQEHAKKTLAVAVYNHYKRLQYLPKPKKEKLDKDGKPVEASDKKESK  127

Query  102  ------VDDVELSKSNISLIGPTGSGKTLLAQTLARILNVPFAIADATSLTEAGYVGEDV  155
                  VD VEL+KSNI LIGPTGSGKTLLAQTLAR+L+VPF +ADAT+LTEAGYVGEDV
Sbjct  128  LPAKAIVDGVELAKSNILLIGPTGSGKTLLAQTLARMLDVPFVMADATTLTEAGYVGEDV  187

Query  156  ENILLKLIQAADYDVEKAEKGIIYIDEIDKVARKSENPSITRDVSGEGVQQALLKILEGT  215
            ENI+ KL+QA DY+VEKA++GI+YIDEIDK++RKS+NPSITRDVSGEGVQQALLK++EGT
Sbjct  188  ENIIQKLLQACDYNVEKAQRGIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLVEGT  247

Query  216  VASVPPQGGRKHPHQEFIQIDTTNILFICGGAFDGIEQIIKRRLGQKVIGFGADNKAADL  275
            +ASVPPQGGRKHP+Q+F+Q+DTTNILFICGGAFDG+E++I++R  +  IGF A     D 
Sbjct  248  MASVPPQGGRKHPNQDFLQVDTTNILFICGGAFDGLEKVIQQRTAKTGIGFNATVPGKDE  307

Query  276  EK-EDLLSKVLPEDLLRFGLIPEFIGRLPVIASLEKLDEEALVAILTKPKNALVKQFKKM  334
                DLL +V PEDL++FGLIPE IGRLPV+A+L +LDEEAL+ ILT+PKNALVKQ++ +
Sbjct  308  RGVSDLLIEVEPEDLIKFGLIPELIGRLPVVATLAQLDEEALIQILTEPKNALVKQYQAL  367

Query  335  LELDNVELEFEEEALSEIAKKAIERKTGARGLRSIIEGIMLDVMFELPSRDDIEKCVITG  394
            L ++  ELE   EALS IAKKAI RKTGARGLRSI+EG ++DVM++LPS  +++K VI  
Sbjct  368  LTMEGSELEVRREALSAIAKKAIARKTGARGLRSILEGSLMDVMYDLPSLKNVQKVVIDE  427

Query  395  ATVTHGEPPRLLLK  408
            +++  G  P L+ K
Sbjct  428  SSIAEGGKPLLVYK  441


> sp|P57981|CLPX_PASMU ATP-dependent Clp protease ATP-binding subunit 
ClpX OS=Pasteurella multocida (strain Pm70) OX=272843 
GN=clpX PE=3 SV=1
Length=411

 Score =  527 bits (1358),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 257/411 (63%), Positives = 329/411 (80%), Gaps = 10/411 (2%)

Query  6    EEKGQLKCSFCGKTQDQVRKLVAGPGVYICDECIELCTEIVEEELGTEEEVEFKD---VP  62
            E+  +L CSFCGK Q  V KL+AG   YIC+ECIELC +++  +     EVE  +   +P
Sbjct  2    EKDTELHCSFCGKEQKHVSKLIAGTSGYICNECIELCHDMLLSDAVETPEVESTEQQKLP  61

Query  63   KPQEIREILNEYVIGQDQAKKSLAVAVYNHYKRINSNSKVDDVELSKSNISLIGPTGSGK  122
             P EIR  L++YVIGQD AKK L+VAVYNHYKR+ S+ ++ DVEL KSNI LIGPTGSGK
Sbjct  62   TPHEIRAHLDDYVIGQDYAKKVLSVAVYNHYKRLRSDKQITDVELGKSNILLIGPTGSGK  121

Query  123  TLLAQTLARILNVPFAIADATSLTEAGYVGEDVENILLKLIQAADYDVEKAEKGIIYIDE  182
            TLLA+T+AR+LNVPFA+ADAT+LTEAGYVGEDVEN+L KL+Q+ DYDVE+AE+GIIYIDE
Sbjct  122  TLLAETMARMLNVPFAMADATTLTEAGYVGEDVENVLQKLVQSCDYDVERAEQGIIYIDE  181

Query  183  IDKVARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQEFIQIDTTNILF  242
            IDK+ RKSENPSITRDVSGEGVQQALLK++EGTVAS+PPQGGRKHP QE +++DT+ ILF
Sbjct  182  IDKITRKSENPSITRDVSGEGVQQALLKLIEGTVASIPPQGGRKHPQQEMLRVDTSKILF  241

Query  243  ICGGAFDGIEQIIKRRLG-QKVIGFGADNKA----ADLEKEDLLSKVLPEDLLRFGLIPE  297
            ICGGAF G++++I++R+     IGF A+ K+    A L +  L  +V P+DL++FGLIPE
Sbjct  242  ICGGAFAGLDKVIEKRVHVGSGIGFSAEVKSKQDKATLSQ--LFEQVEPDDLMKFGLIPE  299

Query  298  FIGRLPVIASLEKLDEEALVAILTKPKNALVKQFKKMLELDNVELEFEEEALSEIAKKAI  357
            FIGRLPV+A L +LDEEALV ILT+PKNAL+KQ++ +  L++V LEF  EAL+ +AKKA+
Sbjct  300  FIGRLPVVAPLAELDEEALVKILTEPKNALIKQYQALFSLEDVALEFSPEALTAMAKKAL  359

Query  358  ERKTGARGLRSIIEGIMLDVMFELPSRDDIEKCVITGATVTHGEPPRLLLK  408
             RKTGARGLRSI+E I+LD M++LPS   +EK ++  +T+T  +PP L+ K
Sbjct  360  ARKTGARGLRSIVEAILLDTMYDLPSLQHLEKVIVEASTITDNQPPTLVYK  410


> sp|Q9JTX8|CLPX_NEIMA ATP-dependent Clp protease ATP-binding subunit 
ClpX OS=Neisseria meningitidis serogroup A / serotype 
4A (strain Z2491) OX=122587 GN=clpX PE=3 SV=1
Length=414

 Score =  499 bits (1285),  Expect = 5e-175, Method: Compositional matrix adjust.
 Identities = 251/408 (62%), Positives = 317/408 (78%), Gaps = 14/408 (3%)

Query  13   CSFCGKTQDQVRKLVAGPGVYICDECIELCTEIVEEEL--GTEEEV------EFKDVPKP  64
            CSFCGK++  V+ L+ G   +ICDEC+  C EI+ E+   GT  E       E   +P P
Sbjct  8    CSFCGKSKSHVKHLIEGENAFICDECVSNCIEILHEDGNDGTPSESAGGEPEESGKLPTP  67

Query  65   QEIREILNEYVIGQDQAKKSLAVAVYNHYKRINSNSKVDDVELSKSNISLIGPTGSGKTL  124
             EI   LN++VIGQ+QAKK+LAV+VYNHYKR+       +VELSKSNI LIGPTGSGKTL
Sbjct  68   AEIVANLNDHVIGQEQAKKALAVSVYNHYKRLRHPKARANVELSKSNILLIGPTGSGKTL  127

Query  125  LAQTLARILNVPFAIADATSLTEAGYVGEDVENILLKLIQAADYDVEKAEKGIIYIDEID  184
            LAQ+LAR L+VPF +ADAT+LTEAGYVGEDVE I+ KL+   D+DVEKA++GI+YIDEID
Sbjct  128  LAQSLARKLDVPFVMADATTLTEAGYVGEDVEQIITKLLGKCDFDVEKAQRGIVYIDEID  187

Query  185  KVARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQEFIQIDTTNILFIC  244
            K++RKS+NPSITRDVSGEGVQQALLK++EGTVASVPPQGGRKHP+QEFI +DTTNILFIC
Sbjct  188  KISRKSDNPSITRDVSGEGVQQALLKLIEGTVASVPPQGGRKHPNQEFINVDTTNILFIC  247

Query  245  GGAFDGIEQIIKRRLGQKVIGFGAD----NKAADLEKEDLLSKVLPEDLLRFGLIPEFIG  300
            GGAF G+E++I++R  +  IGFGA     ++ AD+ K  L   V PEDL++FGLIPE IG
Sbjct  248  GGAFAGLEKVIRQRTEKGGIGFGASVHSKDENADITK--LFGIVEPEDLIKFGLIPELIG  305

Query  301  RLPVIASLEKLDEEALVAILTKPKNALVKQFKKMLELDNVELEFEEEALSEIAKKAIERK  360
            RLPVIA+LE+LDE+AL+ ILT+PKNALVKQ++ +  ++NVELEFEE AL  IA++A+ERK
Sbjct  306  RLPVIATLEELDEDALINILTEPKNALVKQYQALFGMENVELEFEEGALRSIARQAMERK  365

Query  361  TGARGLRSIIEGIMLDVMFELPSRDDIEKCVITGATVTHGEPPRLLLK  408
            TGARGLRSI+E  +LD M+ LP    ++K V+  A +  G  P L+ +
Sbjct  366  TGARGLRSIVERCLLDTMYRLPDLQGLKKVVVGKAVIEEGREPELVFE  413


> sp|Q92TA7|HSLU_RHIME ATP-dependent protease ATPase subunit HslU 
OS=Rhizobium meliloti (strain 1021) OX=266834 GN=hslU PE=3 
SV=1
Length=435

 Score = 91.7 bits (226),  Expect = 3e-20, Method: Compositional matrix adjust.
 Identities = 73/236 (31%), Positives = 113/236 (48%), Gaps = 62/236 (26%)

Query  154  DVENILLKLIQAADYDVEKAEKGIIYIDEIDKVARKSENPSITRDVSGEGVQQALLKILE  213
            D E I  + + AA+ D      GI+++DEIDK+A  +    I   VS EGVQ+ LL ++E
Sbjct  227  DNEQIQREAVAAAEND------GIVFLDEIDKIA--TREGGIGAGVSREGVQRDLLPLVE  278

Query  214  GTVASVPPQGGRKHPHQEFIQIDTTNILFICGGAFDGIEQIIKRRLGQKVIGFGADNKAA  273
            GT  +            ++  + T +ILFI  GAF     + K                 
Sbjct  279  GTTVAT-----------KYGPVKTDHILFIASGAF----HVAK-----------------  306

Query  274  DLEKEDLLSKVLPEDLLRFGLIPEFIGRLPVIASLEKLDEEALVAILTKPKNALVKQFKK  333
                        P DLL     PE  GRLP+   L  L +E    ILT+ + +L++Q+K 
Sbjct  307  ------------PSDLL-----PELQGRLPIRVELRALTKEDFRRILTETEASLIRQYKA  349

Query  334  MLELDNVELEFEEEALSEIAKKAIE-----RKTGARGLRSIIEGIMLDVMFELPSR  384
            +LE + V L+F E+A+  +A+ A++        GAR L++++E ++ DV F  P R
Sbjct  350  LLETEGVALDFTEDAIDALAEVAVQLNANVENIGARRLQTVMERVLDDVSFNAPDR  405


 Score = 88.2 bits (217),  Expect = 5e-19, Method: Compositional matrix adjust.
 Identities = 43/101 (43%), Positives = 67/101 (66%), Gaps = 1/101 (1%)

Query  64   PQEIREILNEYVIGQDQAKKSLAVAVYNHYKRINSNSKVDDVELSKSNISLIGPTGSGKT  123
            P+EI   L+ Y+IGQ  AK+++A+A+ N ++R   + ++ D E+   NI +IGPTG GKT
Sbjct  6    PREIVSELDRYIIGQKDAKRAVAIALRNRWRRQQLDDELRD-EVMPKNILMIGPTGVGKT  64

Query  124  LLAQTLARILNVPFAIADATSLTEAGYVGEDVENILLKLIQ  164
             +++ LA++   PF   +AT  TE GYVG DVE I+  L++
Sbjct  65   EISRRLAKLAGAPFVKVEATKFTEVGYVGRDVEQIVRDLVE  105


> sp|Q16CY2|HSLU_ROSDO ATP-dependent protease ATPase subunit HslU 
OS=Roseobacter denitrificans (strain ATCC 33942 / OCh 114) 
OX=375451 GN=hslU PE=3 SV=1
Length=435

 Score = 89.7 bits (221),  Expect = 1e-19, Method: Compositional matrix adjust.
 Identities = 75/218 (34%), Positives = 101/218 (46%), Gaps = 60/218 (28%)

Query  174  EKGIIYIDEIDKVARKSENPSITR--DVSGEGVQQALLKILEGTVASVPPQGGRKHPHQE  231
            + GI+++DEIDKV  KS+    TR  DVS EGVQ+ LL ++EGT  S       KH    
Sbjct  241  QNGIVFLDEIDKVCAKSD----TRGGDVSREGVQRDLLPLIEGTTVST------KHG---  287

Query  232  FIQIDTTNILFICGGAFDGIEQIIKRRLGQKVIGFGADNKAADLEKEDLLSKVLPEDLLR  291
               I T +ILFI  GAF     I K                             P DLL 
Sbjct  288  --PIKTDHILFIASGAF----HIAK-----------------------------PSDLL-  311

Query  292  FGLIPEFIGRLPVIASLEKLDEEALVAILTKPKNALVKQFKKMLELDNVELEFEEEALSE  351
                PE  GRLP+   L  L EE  V ILT+  NAL  Q+  ++  + V + F E+ ++ 
Sbjct  312  ----PELQGRLPIRVELRALTEEDFVRILTETDNALTLQYTALMGTEEVTVSFTEDGIAA  367

Query  352  IAKKAIE-----RKTGARGLRSIIEGIMLDVMFELPSR  384
            +AK A E        GAR L +++E +  ++ F  P R
Sbjct  368  LAKIAAEVNQSVENIGARRLYTVMERVFEELSFSAPDR  405


 Score = 86.7 bits (213),  Expect = 1e-18, Method: Compositional matrix adjust.
 Identities = 44/103 (43%), Positives = 66/103 (64%), Gaps = 1/103 (1%)

Query  64   PQEIREILNEYVIGQDQAKKSLAVAVYNHYKRINSNSKVDDVELSKSNISLIGPTGSGKT  123
            P+EI   L+ ++IGQ+ AK+++AVA+ N ++R      + D E+   NI +IGPTG GKT
Sbjct  6    PREIVSELDRFIIGQNDAKRAVAVALRNRWRRKQLADDLRD-EVYPKNILMIGPTGVGKT  64

Query  124  LLAQTLARILNVPFAIADATSLTEAGYVGEDVENILLKLIQAA  166
             +++ LA++   PF   +AT  TE GYVG DVE I+  L+  A
Sbjct  65   EISRRLAKLARAPFLKVEATKFTEVGYVGRDVEQIIRDLVDNA  107


> sp|Q5P503|HSLU_AROAE ATP-dependent protease ATPase subunit HslU 
OS=Aromatoleum aromaticum (strain EbN1) OX=76114 GN=hslU 
PE=3 SV=1
Length=442

 Score = 89.0 bits (219),  Expect = 2e-19, Method: Compositional matrix adjust.
 Identities = 72/212 (34%), Positives = 103/212 (49%), Gaps = 56/212 (26%)

Query  174  EKGIIYIDEIDKVARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQEFI  233
            + GI+++DEIDKVA +SE      DVS +GVQ+ LL ++EGT  S            ++ 
Sbjct  248  QNGIVFLDEIDKVASRSEGQGA--DVSRQGVQRDLLPLVEGTTIST-----------KYG  294

Query  234  QIDTTNILFICGGAFDGIEQIIKRRLGQKVIGFGADNKAADLEKEDLLSKVLPEDLLRFG  293
             I T +ILFI  GAF                                L+K  P DL    
Sbjct  295  MIKTDHILFIASGAFH-------------------------------LAK--PSDL----  317

Query  294  LIPEFIGRLPVIASLEKLDEEALVAILTKPKNALVKQFKKMLELDNVELEFEEEA---LS  350
             IPE  GRLP+   LE L  E    ILT+    LV+Q++ +L  D V LEF ++    L+
Sbjct  318  -IPELQGRLPIRVELESLSVEDFQCILTQTDACLVRQYQALLATDGVTLEFTDDGIRRLA  376

Query  351  EIAKKAIER--KTGARGLRSIIEGIMLDVMFE  380
            EIA +  E+    GAR L +++E ++ ++ FE
Sbjct  377  EIAYQVNEKTENIGARRLYTVMEKLLEEISFE  408


 Score = 88.6 bits (218),  Expect = 4e-19, Method: Compositional matrix adjust.
 Identities = 45/106 (42%), Positives = 68/106 (64%), Gaps = 1/106 (1%)

Query  64   PQEIREILNEYVIGQDQAKKSLAVAVYNHYKRINSNSKVDDVELSKSNISLIGPTGSGKT  123
            P EI   L+++++GQ +AKK++A+A+ N ++R      +   E++  NI +IGPTG GKT
Sbjct  6    PPEIVSELDKHIVGQGKAKKAVAIALRNRWRRAQVEEPLRS-EITPKNILMIGPTGVGKT  64

Query  124  LLAQTLARILNVPFAIADATSLTEAGYVGEDVENILLKLIQAADYD  169
             +A+ LAR+ N PF   +AT  TE GYVG DV+ I+  L + A  D
Sbjct  65   EIARRLARLANAPFIKIEATKFTEVGYVGRDVDTIIRDLAEIAVKD  110


> sp|P57968|HSLU_PASMU ATP-dependent protease ATPase subunit HslU 
OS=Pasteurella multocida (strain Pm70) OX=272843 GN=hslU 
PE=3 SV=1
Length=443

 Score = 87.0 bits (214),  Expect = 1e-18, Method: Compositional matrix adjust.
 Identities = 42/103 (41%), Positives = 70/103 (68%), Gaps = 1/103 (1%)

Query  64   PQEIREILNEYVIGQDQAKKSLAVAVYNHYKRINSNSKVDDVELSKSNISLIGPTGSGKT  123
            P+EI   L++++IGQ  AK+++A+A+ N ++R+     +   E++  NI +IGPTG GKT
Sbjct  6    PREIVSELDQHIIGQADAKRAVAIALRNRWRRMQLQEPLRH-EVTPKNILMIGPTGVGKT  64

Query  124  LLAQTLARILNVPFAIADATSLTEAGYVGEDVENILLKLIQAA  166
             +A+ LA++ N PF   +AT  TE GYVG++V++I+  L  +A
Sbjct  65   EIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSA  107


 Score = 85.5 bits (210),  Expect = 4e-18, Method: Compositional matrix adjust.
 Identities = 69/211 (33%), Positives = 100/211 (47%), Gaps = 56/211 (27%)

Query  174  EKGIIYIDEIDKVARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQEFI  233
            + GI++IDEIDK+ +K E      DVS EGVQ+ LL ++EGT  S       KH      
Sbjct  249  QNGIVFIDEIDKICKKGEYSGA--DVSREGVQRDLLPLVEGTTVST------KHG-----  295

Query  234  QIDTTNILFICGGAFDGIEQIIKRRLGQKVIGFGADNKAADLEKEDLLSKVLPEDLLRFG  293
             + T +ILFI  GAF    Q+ +                             P DL    
Sbjct  296  MVKTDHILFIASGAF----QVAR-----------------------------PSDL----  318

Query  294  LIPEFIGRLPVIASLEKLDEEALVAILTKPKNALVKQFKKMLELDNVELEFEEEALSEIA  353
             IPE  GRLP+   L  L       ILT+P  +L +Q+K ++  + V +EF  E++ +IA
Sbjct  319  -IPELQGRLPIRVELSALSAVDFERILTEPNASLTEQYKALMATEGVNIEFTGESIKKIA  377

Query  354  KKA--IERKT---GARGLRSIIEGIMLDVMF  379
            + A  +  KT   GAR L +++E +M  + F
Sbjct  378  EAAFRVNEKTENIGARRLHTVMERLMDKISF  408


> tr|A5FYD7|A5FYD7_ACICJ ATP-dependent protease ATPase subunit 
HslU OS=Acidiphilium cryptum (strain JF-5) OX=349163 GN=hslU 
PE=3 SV=1
Length=439

 Score = 84.3 bits (207),  Expect = 8e-18, Method: Compositional matrix adjust.
 Identities = 41/103 (40%), Positives = 67/103 (65%), Gaps = 1/103 (1%)

Query  64   PQEIREILNEYVIGQDQAKKSLAVAVYNHYKRINSNSKVDDVELSKSNISLIGPTGSGKT  123
            P+EI   L+ +++GQ  AK+++A+A+ N ++R      + + E+   NI +IGPTG GKT
Sbjct  9    PREIVSELDRFIVGQQDAKRAVAIALRNRWRRQQLPEGLRE-EVVPKNILMIGPTGCGKT  67

Query  124  LLAQTLARILNVPFAIADATSLTEAGYVGEDVENILLKLIQAA  166
             +A+ LA++   PF   +AT  TE GYVG DVE+I+  L++ +
Sbjct  68   EIARRLAKLAQAPFIKVEATKFTEVGYVGRDVESIVRDLVEVS  110


 Score = 80.1 bits (196),  Expect = 2e-16, Method: Compositional matrix adjust.
 Identities = 66/224 (29%), Positives = 106/224 (47%), Gaps = 54/224 (24%)

Query  166  ADYDVEKAEKGIIYIDEIDKVARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGR  225
            AD  +     GI+++DEIDK+  ++E+     DVS EGVQ+ LL ++EGT  S       
Sbjct  235  ADARLHAETHGIVFLDEIDKICARTESGFRGGDVSREGVQRDLLPLIEGTTVST------  288

Query  226  KHPHQEFIQIDTTNILFICGGAFDGIEQIIKRRLGQKVIGFGADNKAADLEKEDLLSKVL  285
                 ++  + T +ILFI  GAF     + K                             
Sbjct  289  -----KYGPVKTDHILFIASGAF----HVAK-----------------------------  310

Query  286  PEDLLRFGLIPEFIGRLPVIASLEKLDEEALVAILTKPKNALVKQFKKMLELDNVELEFE  345
            P DLL     PE  GRLP+   L  L  E    ILT+P+++L+KQ+  +++ +NV+L F 
Sbjct  311  PSDLL-----PELQGRLPIRVELASLSREDFRRILTEPEHSLLKQYVALMKTENVDLHFT  365

Query  346  EEALSEIAKKAIE-----RKTGARGLRSIIEGIMLDVMFELPSR  384
            ++A+  +A  A +        GAR L +++E ++ ++ F    R
Sbjct  366  DDAVDAVAALAADINDRVENIGARRLATVLERLLEEISFAATDR  409


> tr|A4SZP7|A4SZP7_POLAQ ATP-dependent Clp protease ATP-binding 
subunit ClpA OS=Polynucleobacter asymbioticus (strain DSM 18221 
/ CIP 109841 / QLW-P1DMWA-1) OX=312153 GN=Pnuc_1748 PE=3 
SV=1
Length=768

 Score = 57.4 bits (137),  Expect = 6e-09, Method: Compositional matrix adjust.
 Identities = 83/330 (25%), Positives = 132/330 (40%), Gaps = 71/330 (22%)

Query  54   EEVEFKDVPKPQEIREILNEYVIGQDQAKKSLAVAVYNHYKRINSNSKVDDVELSKSNIS  113
            + V   D  K Q +   +   V GQD A ++LA A+        + + +  ++    +  
Sbjct  442  QSVTVDDRSKLQTLDRDIKSVVFGQDPAIEALASAIKM------TRAGLGKIDRPIGSFL  495

Query  114  LIGPTGSGKTLLAQTLARILNVPFAIADATSLTE-----------AGYVGEDVENILLKL  162
              GPTG GKT +A+ LA IL +     D +   E            GYVG D   +L + 
Sbjct  496  FSGPTGVGKTEVAKQLAYILGIELLRFDMSEYMERHAVSRLIGAPPGYVGFDQGGLLTEA  555

Query  163  IQAADYDVEKAEKGIIYIDEIDKVARKSENPSITRDVSGEGVQQALLKILE-GTVASVPP  221
                   V K    ++ +DEI+K      +P I            LL++++ GT+     
Sbjct  556  -------VNKKPHCVLLLDEIEKA-----HPDIF---------NILLQVMDHGTLTD---  591

Query  222  QGGRKHPHQEFIQIDTTNILFICGGAFDGIEQIIKRRLGQKVIGFGADNKAADLEKEDLL  281
              GRK   +  I I TTN          G E + K       IGF    ++ D       
Sbjct  592  NNGRKTDFRNVIIIMTTNA---------GAEAMQK-----STIGFTNARESGDEMA----  633

Query  282  SKVLPEDLLRFGLIPEFIGRLPVIASLEKLDEEALVAILTKPKNALVKQFKKMLELDNVE  341
                  D+ +F   PEF  RL  I S + LDE  ++ ++ K     + Q ++ L    V+
Sbjct  634  ------DIKKF-FTPEFRNRLDAIVSFKALDETIIMRVVDK----FLMQLEEQLHEKKVD  682

Query  342  LEFEEEALSEIAKKAIERKTGARGLRSIIE  371
              F     + +AK   +   GAR ++ II+
Sbjct  683  ATFSAALRAHLAKHGFDPLMGARPMQRIIQ  712


> tr|Q162S2|Q162S2_ROSDO ATP-dependent Clp protease, ATP-binding 
subunit ClpA, putative OS=Roseobacter denitrificans (strain 
ATCC 33942 / OCh 114) OX=375451 GN=clpA PE=3 SV=1
Length=773

 Score = 53.5 bits (127),  Expect = 1e-07, Method: Compositional matrix adjust.
 Identities = 76/312 (24%), Positives = 123/312 (39%), Gaps = 69/312 (22%)

Query  71   LNEYVIGQDQAKKSLAVAVYNHYKRINSNSKVDDVELSKSNISLIGPTGSGKTLLAQTLA  130
            L   V GQ+ A ++L+ A+        + + + + E    N    GPTG GKT +A+ LA
Sbjct  466  LKRVVFGQNAAIEALSSAIKL------ARAGLREPEKPIGNYLFAGPTGVGKTEVAKQLA  519

Query  131  RILNVPFAIADATSLTE-----------AGYVGEDVENILLKLIQAADYDVEKAEKGIIY  179
              L V     D +   E            GYVG D   +L          V++    ++ 
Sbjct  520  DTLGVELLRFDMSEYMEKHAVSRLIGAPPGYVGFDQGGMLTD-------GVDQHPHCVLL  572

Query  180  IDEIDKVARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQEFIQIDTTN  239
            +DE++K      +P          V   LL++++     +    GR         +D  N
Sbjct  573  LDEMEKA-----HPD---------VYNILLQVMDH--GKLTDHNGR--------TVDFRN  608

Query  240  ILFICGGAFDGIEQIIKRRLGQKVIGFGADNKAADLEKEDLLSKVLPEDLLRFGLIPEFI  299
            ++ I        EQ       ++ IGFG D +    E ED  +       +     PEF 
Sbjct  609  VVLIMTSNAGAAEQ------AKEAIGFGRDRR----EGEDTAA-------IERTFTPEFR  651

Query  300  GRLPVIASLEKLDEEALVAILTKPKNALVKQFKKMLELDNVELEFEEEALSEIAKKAIER  359
             RL  + S   L +E ++ ++ K     V Q +  L   NV +E  + A   +A K  + 
Sbjct  652  NRLDAVISFAPLPKEVILRVVEK----FVLQLEAQLMDRNVTIELTKPAAEWLADKGYDA  707

Query  360  KTGARGLRSIIE  371
            K GAR L  +I+
Sbjct  708  KMGARPLGRVIQ  719


> tr|Q5P202|Q5P202_AROAE Probable ATP-dependent protease OS=Aromatoleum 
aromaticum (strain EbN1) OX=76114 GN=clpA PE=3 SV=1
Length=757

 Score = 52.4 bits (124),  Expect = 2e-07, Method: Compositional matrix adjust.
 Identities = 80/313 (26%), Positives = 124/313 (40%), Gaps = 71/313 (23%)

Query  71   LNEYVIGQDQAKKSLAVAVYNHYKRINSNSKVDDVELSKSNISLIGPTGSGKTLLAQTLA  130
            L   V GQ+ A  +LA A+        S S + +      +    GPTG GKT +A+ LA
Sbjct  460  LKNVVFGQEAAIDALAKAIKM------SRSGLGNPAKPIGSFLFSGPTGVGKTEVARQLA  513

Query  131  RILNVPFAIADATSLTE-----------AGYVGEDVENILLKLIQAADYDVEKAEKGIIY  179
              + +     D +   E            GYVG D   +L + I        K    ++ 
Sbjct  514  FTMGIELVRFDMSEYMERHAVSRLIGAPPGYVGFDQGGLLTEAIT-------KKPHCVLL  566

Query  180  IDEIDKVARKSENPSITRDVSGEGVQQALLKILE-GTVASVPPQGGRKHPHQEFIQIDTT  238
            +DEI+K      +P I            LL++++ GT+       GR+   +  I I TT
Sbjct  567  LDEIEKA-----HPDIY---------NILLQVMDHGTLTD---NNGRQADFRNVILIMTT  609

Query  239  NILFICGGAFDGIEQIIKRRLGQKVIGFGADNKAADLEKEDLLSKVLPEDLLRFGLIPEF  298
            N          G E + K      VIGF A  +A D E  D          ++    PEF
Sbjct  610  NA---------GAESMQK-----AVIGFSAKREAGD-EMAD----------IKRMFSPEF  644

Query  299  IGRLPVIASLEKLDEEALVAILTKPKNALVKQFKKMLELDNVELEFEEEALSEIAKKAIE  358
              RL    S + LD E ++ ++ K     + Q +  L    VE  F +E  + +A +  +
Sbjct  645  RNRLDATISFKALDNEVILRVVDK----FLMQLEAQLHEKKVEAHFTDELKAWLAGEGFD  700

Query  359  RKTGARGLRSIIE  371
               GAR +  +I+
Sbjct  701  PMMGARPMARLIQ  713


> tr|A5G1K5|A5G1K5_ACICJ ATP-dependent Clp protease, ATP-binding 
subunit clpA OS=Acidiphilium cryptum (strain JF-5) OX=349163 
GN=Acry_2546 PE=3 SV=1
Length=775

 Score = 49.3 bits (116),  Expect = 2e-06, Method: Compositional matrix adjust.
 Identities = 74/312 (24%), Positives = 120/312 (38%), Gaps = 69/312 (22%)

Query  71   LNEYVIGQDQAKKSLAVAVYNHYKRINSNSKVDDVELSKSNISLIGPTGSGKTLLAQTLA  130
            L   V GQD A ++L+ A+        + + + D E         GPTG GKT +A+ LA
Sbjct  462  LKSMVFGQDSAIEALSAAIKL------ARAGLRDAEKPIGCYLFSGPTGVGKTEVARQLA  515

Query  131  RILNVPFAIADATSLTE-----------AGYVGEDVENILLKLIQAADYDVEKAEKGIIY  179
              L +     D +   E            GYVG D   +L          V++    ++ 
Sbjct  516  STLGIELTRFDMSEYMERHSISRLIGAPPGYVGFDQGGLLTD-------SVDQHPHCVLL  568

Query  180  IDEIDKVARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQEFIQIDTTN  239
            +DEI+K      +P +            LL++++     +    G+    +  I I TTN
Sbjct  569  LDEIEKA-----HPDLF---------NILLQVMDH--GKLTDHNGKTVDFRNVILIMTTN  612

Query  240  ILFICGGAFDGIEQIIKRRLGQKVIGFGADNKAADLEKEDLLSKVLPEDLLRFGLIPEFI  299
                  GA D         + +  IGFG D +    E E+ + ++           PEF 
Sbjct  613  -----AGAAD---------MAKTAIGFGRDVRLG--EDEEAIKRL---------FTPEFR  647

Query  300  GRLPVIASLEKLDEEALVAILTKPKNALVKQFKKMLELDNVELEFEEEALSEIAKKAIER  359
             RL  +     L  E +  ++ K     V Q +  L   NV +E    A   +A++  + 
Sbjct  648  NRLDAVIPFSGLTPEIVARVVEK----FVMQLEAQLADRNVTIELSSAAKEFLAERGYDP  703

Query  360  KTGARGLRSIIE  371
              GAR L  +I+
Sbjct  704  LYGARPLARVIQ  715


> tr|Q92M98|Q92M98_RHIME ATP-dependent zinc metalloprotease FtsH 
OS=Rhizobium meliloti (strain 1021) OX=266834 GN=ftsH PE=3 
SV=1
Length=645

 Score = 47.0 bits (110),  Expect = 9e-06, Method: Compositional matrix adjust.
 Identities = 30/75 (40%), Positives = 40/75 (53%), Gaps = 6/75 (8%)

Query  114  LIGPTGSGKTLLAQTLARILNVPFAIADATSLTEAGYVGEDVENILLKLIQAADYDVEKA  173
            L+GP G+GKTLLA+++A   NVPF     +   E  +VG     +     QA     +K 
Sbjct  196  LVGPPGTGKTLLARSVAGEANVPFFTISGSDFVEM-FVGVGASRVRDMFEQA-----KKN  249

Query  174  EKGIIYIDEIDKVAR  188
               II+IDEID V R
Sbjct  250  APCIIFIDEIDAVGR  264


> tr|A5FVF9|A5FVF9_ACICJ ATP-dependent zinc metalloprotease FtsH 
OS=Acidiphilium cryptum (strain JF-5) OX=349163 GN=ftsH PE=3 
SV=1
Length=641

 Score = 45.1 bits (105),  Expect = 4e-05, Method: Compositional matrix adjust.
 Identities = 29/77 (38%), Positives = 39/77 (51%), Gaps = 6/77 (8%)

Query  112  ISLIGPTGSGKTLLAQTLARILNVPFAIADATSLTEAGYVGEDVENILLKLIQAADYDVE  171
            + L+GP G+GKTLLA+ +A   NVPF     +   E  +VG     +     Q      +
Sbjct  193  VLLVGPPGTGKTLLARAIAGEANVPFFTISGSDFVEM-FVGVGASRVRDMFEQG-----K  246

Query  172  KAEKGIIYIDEIDKVAR  188
            K    II+IDEID V R
Sbjct  247  KNAPCIIFIDEIDAVGR  263


> tr|A0A0U1RIC9|A0A0U1RIC9_NEIMA Putative ATP-dependent protease 
ATP-binding protein OS=Neisseria meningitidis serogroup A 
/ serotype 4A (strain Z2491) OX=122587 GN=NMA1045 PE=3 SV=1
Length=759

 Score = 44.7 bits (104),  Expect = 5e-05, Method: Compositional matrix adjust.
 Identities = 77/312 (25%), Positives = 119/312 (38%), Gaps = 69/312 (22%)

Query  71   LNEYVIGQDQAKKSLAVAVYNHYKRINSNSKVDDVELSKSNISLIGPTGSGKTLLAQTLA  130
            L   V GQ+ A  +L  AV    K   S   + D  +     S  GPTG GKT +A+ LA
Sbjct  457  LKNMVYGQENAIYALVAAV----KMSRSGLGLPDKPIGSFLFS--GPTGVGKTEVAKQLA  510

Query  131  RILNVPFAIADATSLTE-----------AGYVGEDVENILLKLIQAADYDVEKAEKGIIY  179
              + VP    D +   E            GYVG +   +L +        V K    ++ 
Sbjct  511  YSMGVPLQRFDMSEYMERHAVSRLIGAPPGYVGFEQGGLLTEA-------VNKQPHCVLL  563

Query  180  IDEIDKVARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQEFIQIDTTN  239
            +DEI+K      +P I            LL++++     +    G+    +  I I TTN
Sbjct  564  LDEIEKA-----HPDIF---------NVLLQVMDA--GKLTDNNGKSADFRNVILIMTTN  607

Query  240  ILFICGGAFDGIEQIIKRRLGQKVIGFGADNKAADLEKEDLLSKVLPEDLLRFGLIPEFI  299
                  GA           L +  +GF A  +  D  +   ++K+           PEF 
Sbjct  608  -----AGA---------ESLSRPSLGFTAKRERGD--EMQAINKL---------FTPEFR  642

Query  300  GRLPVIASLEKLDEEALVAILTKPKNALVKQFKKMLELDNVELEFEEEALSEIAKKAIER  359
             RL  I     L E  +V ++ K     + Q +  L    VE EF       +A+K  + 
Sbjct  643  NRLDAIIPFAPLSEPIIVKVVDK----FLLQLEHRLLDKKVEAEFTPALRKYLAEKGFDP  698

Query  360  KTGARGLRSIIE  371
            + GAR +  +I+
Sbjct  699  QMGARPMNRLIQ  710


> tr|Q9CNJ2|Q9CNJ2_PASMU ATP-dependent zinc metalloprotease FtsH 
OS=Pasteurella multocida (strain Pm70) OX=272843 GN=ftsH PE=3 
SV=1
Length=639

 Score = 43.1 bits (100),  Expect = 1e-04, Method: Compositional matrix adjust.
 Identities = 28/78 (36%), Positives = 40/78 (51%), Gaps = 6/78 (8%)

Query  112  ISLIGPTGSGKTLLAQTLARILNVPFAIADATSLTEAGYVGEDVENILLKLIQAADYDVE  171
            I ++GP G+GKTLLA+ +A    VPF     +   E  +VG     +     QA     +
Sbjct  186  ILMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEM-FVGVGASRVRDMFEQA-----K  239

Query  172  KAEKGIIYIDEIDKVARK  189
            K    +I+IDEID V R+
Sbjct  240  KNAPCLIFIDEIDAVGRQ  257


> tr|A4SXL5|A4SXL5_POLAQ ATP-dependent zinc metalloprotease FtsH 
OS=Polynucleobacter asymbioticus (strain DSM 18221 / CIP 109841 
/ QLW-P1DMWA-1) OX=312153 GN=ftsH PE=3 SV=1
Length=621

 Score = 41.6 bits (96),  Expect = 4e-04, Method: Compositional matrix adjust.
 Identities = 28/75 (37%), Positives = 37/75 (49%), Gaps = 6/75 (8%)

Query  114  LIGPTGSGKTLLAQTLARILNVPFAIADATSLTEAGYVGEDVENILLKLIQAADYDVEKA  173
            L+GP G+GKTLLA+ +A    VPF     +   E  +VG     +      A     +K 
Sbjct  188  LVGPPGTGKTLLAKAIAGEAKVPFFSISGSDFVEM-FVGVGASRVRDMFENA-----KKN  241

Query  174  EKGIIYIDEIDKVAR  188
               II+IDEID V R
Sbjct  242  SPCIIFIDEIDAVGR  256


> tr|Q167Z2|Q167Z2_ROSDO ATP-dependent zinc metalloprotease FtsH 
OS=Roseobacter denitrificans (strain ATCC 33942 / OCh 114) 
OX=375451 GN=ftsH PE=3 SV=1
Length=641

 Score = 41.2 bits (95),  Expect = 6e-04, Method: Compositional matrix adjust.
 Identities = 28/75 (37%), Positives = 37/75 (49%), Gaps = 6/75 (8%)

Query  114  LIGPTGSGKTLLAQTLARILNVPFAIADATSLTEAGYVGEDVENILLKLIQAADYDVEKA  173
            L GP G+GKTLLA+ +A    VPF     +   E  +VG     +     QA     +K 
Sbjct  192  LEGPPGTGKTLLARAIAGEAGVPFFTISGSDFVEM-FVGVGASRVRDMFEQA-----KKN  245

Query  174  EKGIIYIDEIDKVAR  188
               I++IDEID V R
Sbjct  246  APCIVFIDEIDAVGR  260


> tr|Q92Q87|Q92Q87_RHIME Probable nitrogen regulation protein OS=Rhizobium 
meliloti (strain 1021) OX=266834 GN=ntrX PE=4 SV=1
Length=454

 Score = 40.4 bits (93),  Expect = 0.001, Method: Compositional matrix adjust.
 Identities = 29/98 (30%), Positives = 52/98 (53%), Gaps = 11/98 (11%)

Query  102  VDDVELSKSNISLIGPTGSGKTLLAQTLAR---ILNVPFAIADATSLT----EAGYVGED  154
            ++ V  + S I + GP+GSGK L+A+ + R     N PF   +A ++T    E    G +
Sbjct  156  IEKVAPTNSRIMIQGPSGSGKELVARMIHRKSARANGPFVALNAAAITPDRMEIALFGTE  215

Query  155  VENILLKLIQAADYDVEKAEKGIIYIDEIDKVARKSEN  192
                  +   A    +E+A  GI+Y+DE+ ++ R+++N
Sbjct  216  GTTGQPRRTGA----LEEAHGGILYLDEVGEMPRETQN  249



Lambda      K        H        a         alpha
   0.315    0.136    0.374    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1697257814


  Database: all.fasta
    Posted date:  Feb 27, 2019  3:46 PM
  Number of letters in database: 7,649,153
  Number of sequences in database:  24,267



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40