Running MakePangenome..
Information about input data:
 Number of genomes:	4
 Number of sequences:	4
 Number of sequences per genome:	1
 Total length of input (bp):	17476994
 Minimum genome length (bp):	4284494
 Median genome length (bp):	4339588
 Average genome length (bp):	4369248
 Maximum genome length (bp):	4513324

============================

[2020-Dec-13 19:18:27 UTC+03:00] BeginIteration 1, AnchorJoinerFast

Length of all major blocks of at least 2 fragments:	712107

Stable blocks (represented in all genomes once, but not minor):
 fragments:	3664
 blocks:	916
 Block identity:
  min:	0.8186
  median:	0.8882
  avg:	0.8888
  max:	0.9947

 Identity of joined blocks:	0.909379
 Nucleotides in blocks:	2625892
  The percentage of input length:	15.02%


============================

[2020-Dec-13 19:18:47 UTC+03:00] BeginIteration 2, AnchorJoinerFast

Length of all major blocks of at least 2 fragments:	2418997

Stable blocks (represented in all genomes once, but not minor):
 fragments:	12324
 blocks:	3081
 Block identity:
  min:	0.7932
  median:	0.887
  avg:	0.8876
  max:	0.9947

 Identity of joined blocks:	0.90836
 Nucleotides in blocks:	8831194
  The percentage of input length:	50.53%

Distance from previous pre-pangenome (bp):	9223087
 The percentage of input length:	52.77%
Distance is sufficient to carry on

============================

[2020-Dec-13 19:19:14 UTC+03:00] BeginIteration 3, AnchorJoinerFast

Length of all major blocks of at least 2 fragments:	3213978

Stable blocks (represented in all genomes once, but not minor):
 fragments:	15400
 blocks:	3850
 Block identity:
  min:	0.7932
  median:	0.8867
  avg:	0.8875
  max:	0.9947

 Identity of joined blocks:	0.908116
 Nucleotides in blocks:	10934219
  The percentage of input length:	62.56%

Distance from previous pre-pangenome (bp):	3357666
 The percentage of input length:	19.21%
Distance is sufficient to carry on

============================

[2020-Dec-13 19:19:42 UTC+03:00] BeginIteration 4, AnchorJoinerFast

Length of all major blocks of at least 2 fragments:	3945898

Stable blocks (represented in all genomes once, but not minor):
 fragments:	18592
 blocks:	4648
 Block identity:
  min:	0.7932
  median:	0.8877
  avg:	0.8882
  max:	0.9947

 Identity of joined blocks:	0.908297
 Nucleotides in blocks:	13490688
  The percentage of input length:	77.19%

Distance from previous pre-pangenome (bp):	2788020
 The percentage of input length:	15.95%
Distance is sufficient to carry on

============================

[2020-Dec-13 19:20:14 UTC+03:00] BeginIteration 5, AnchorJoiner

Length of all major blocks of at least 2 fragments:	4137654

Stable blocks (represented in all genomes once, but not minor):
 fragments:	18824
 blocks:	4706
 Block identity:
  min:	0.7932
  median:	0.8878
  avg:	0.8882
  max:	0.9947

 Identity of joined blocks:	0.908275
 Nucleotides in blocks:	13668068
  The percentage of input length:	78.2%

Distance from previous pre-pangenome (bp):	495872
 The percentage of input length:	2.84%
Distance is sufficient to carry on

============================

[2020-Dec-13 19:21:49 UTC+03:00] BeginIteration 6, AnchorJoiner

Length of all major blocks of at least 2 fragments:	4136027

Stable blocks (represented in all genomes once, but not minor):
 fragments:	18836
 blocks:	4709
 Block identity:
  min:	0.7932
  median:	0.8877
  avg:	0.8882
  max:	0.9947

 Identity of joined blocks:	0.908273
 Nucleotides in blocks:	13668507
  The percentage of input length:	78.2%

Distance from previous pre-pangenome (bp):	32244
 The percentage of input length:	0.18%
Distance is sufficient to carry on

============================

[2020-Dec-13 19:22:35 UTC+03:00] BeginIteration 7, AnchorJoiner

Length of all major blocks of at least 2 fragments:	4136108

Stable blocks (represented in all genomes once, but not minor):
 fragments:	18844
 blocks:	4711
 Block identity:
  min:	0.7932
  median:	0.8877
  avg:	0.8881
  max:	0.9947

 Identity of joined blocks:	0.908267
 Nucleotides in blocks:	13669734
  The percentage of input length:	78.21%

Distance from previous pre-pangenome (bp):	5192
 The percentage of input length:	0.03%
Distance is too low => stopping this loop

============================

[2020-Dec-13 19:23:07 UTC+03:00] BeginIteration 8, AnchorBlastJoiner

Length of all major blocks of at least 2 fragments:	4132739

Stable blocks (represented in all genomes once, but not minor):
 fragments:	19048
 blocks:	4762
 Block identity:
  min:	0.7932
  median:	0.8873
  avg:	0.8878
  max:	0.9947

 Identity of joined blocks:	0.908144
 Nucleotides in blocks:	13685785
  The percentage of input length:	78.3%

Distance from previous pre-pangenome (bp):	142154
 The percentage of input length:	0.81%
Distance is sufficient to carry on

============================

[2020-Dec-13 19:24:16 UTC+03:00] BeginIteration 9, AnchorBlastJoiner

Length of all major blocks of at least 2 fragments:	4133587

Stable blocks (represented in all genomes once, but not minor):
 fragments:	19040
 blocks:	4760
 Block identity:
  min:	0.7932
  median:	0.8873
  avg:	0.8878
  max:	0.9947

 Identity of joined blocks:	0.908137
 Nucleotides in blocks:	13687343
  The percentage of input length:	78.31%

Distance from previous pre-pangenome (bp):	4982
 The percentage of input length:	0.03%
Distance is too low => stopping this loop

============================
[2020-Dec-13 19:26:11 UTC+03:00] StopInfo The pangenome has been constructed.

Blocks' lengths:	5439736
 major:	5401213
 minor:	38523

============================
All major blocks of at least 2 fragments:
 fragments:	12087
 blocks:	3361
 fragments / blocks:	3.5962
 Block identity:
  min:	0.7233
  median:	0.9142
  avg:	0.9242
  max:	1

 Identity of joined blocks:	0.912067
 Block sizes:
  min:	2
  median:	4
  avg:	3.60
  max:	21

 Fragment lengths:
  min:	50
  median:	364
  avg:	1342.61
  max:	29994

 Fragment length spreading ((max - min) / avg) inside block:
  min:	0
  median:	0
  avg:	0.005
  max:	0.6973

 GC content:
  min:	0.3447
  median:	0.6144
  avg:	0.6085
  max:	0.8144

 Nucleotides in blocks:	16228126
  The percentage of input length:	92.85%
 Total length of blocks:	4229474
  The percentage of total blocks' length:	77.75%

============================
Stable blocks (represented in all genomes once, but not minor):
 fragments:	6564
 blocks:	1641
 fragments / blocks:	4
 Block identity:
  min:	0.7485
  median:	0.8843
  avg:	0.8836
  max:	0.9937

 Identity of joined blocks:	0.899612
 Block sizes:  	4

 Fragment lengths:
  min:	87
  median:	1143
  avg:	2138.23
  max:	25171

 Fragment length spreading ((max - min) / avg) inside block:
  min:	0
  median:	0.0008
  avg:	0.004
  max:	0.2282

 GC content:
  min:	0.4044
  median:	0.6192
  avg:	0.6156
  max:	0.7554

 Nucleotides in blocks:	14035360
  The percentage of input length:	80.3%
 Total length of blocks:	3522617
  The percentage of total blocks' length:	64.75%


============================
Partial blocks (represented once in subset of genomes):
 fragments:	4290
 blocks:	1484
 fragments / blocks:	2.8908
 Block identity:
  min:	0.7594
  median:	0.9907
  avg:	0.9759
  max:	1

 Identity of joined blocks:	0.980122
 Block sizes:
  min:	2
  median:	3
  avg:	2.89
  max:	3

 Fragment lengths:
  min:	82
  median:	180
  avg:	429.84
  max:	29994

 Fragment length spreading ((max - min) / avg) inside block:
  min:	0
  median:	0
  avg:	0.0041
  max:	0.3963

 GC content:
  min:	0.3447
  median:	0.6019
  avg:	0.6001
  max:	0.8144

 Nucleotides in blocks:	1844030
  The percentage of input length:	10.55%
 Total length of blocks:	643411
  The percentage of total blocks' length:	11.82%

============================
Blocks with repeats (at least two copies in at least one genome):
 fragments:	1233
 blocks:	236
 fragments / blocks:	5.2245
 Block identity:
  min:	0.7233
  median:	0.8633
  avg:	0.8808
  max:	1

 Identity of joined blocks:	0.91343
 Block sizes:
  min:	2
  median:	5
  avg:	5.22
  max:	21

 Fragment lengths:
  min:	50
  median:	128
  avg:	282.84
  max:	2800

 Fragment length spreading ((max - min) / avg) inside block:
  min:	0
  median:	0
  avg:	0.0173
  max:	0.6973

 GC content:
  min:	0.4517
  median:	0.6174
  avg:	0.6119
  max:	0.7411

 Nucleotides in blocks:	348736
  The percentage of input length:	1.99%
 Total length of blocks:	63446
  The percentage of total blocks' length:	1.16%

============================
Unique (blocks of 1 fragment but not minor):
 fragments:	1567
 blocks:	1567
 Fragment lengths:
  min:	100
  median:	193
  avg:	747.76
  max:	55246

 GC content:
  min:	0.379
  median:	0.6024
  avg:	0.6012
  max:	0.8086

 Nucleotides in blocks:	1171739
  The percentage of input length:	6.7%
 Total length of blocks:	1171739
  The percentage of total blocks' length:	21.54%

============================
Minor blocks (too short to say smth about):
 fragments:	2549
 blocks:	1106
 fragments / blocks:	2.3047
 Block identity:
  min:	0
  median:	1
  avg:	0.7582
  max:	1

 Identity of joined blocks:	0.937957
 Block sizes:
  min:	1
  median:	3
  avg:	2.30
  max:	14

 Fragment lengths:
  min:	1
  median:	14
  avg:	30.26
  max:	99

 Fragment length spreading ((max - min) / avg) inside block:
  min:	0
  median:	0
  avg:	0.0354
  max:	2.4444

 GC content:
  min:	0
  median:	0.6011
  avg:	0.5843
  max:	1

 Nucleotides in blocks:	77129
  The percentage of input length:	0.44%
 Total length of blocks:	38523
  The percentage of total blocks' length:	0.7%

The pangenome has been prepared for the next step: PostProcessing
.. done