BLASTP 2.2.26+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.



Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.



Database: mouse.fasta
           1,370 sequences; 908,396 total letters



Query= sp|Q8NFF5|FAD1_HUMAN FAD synthase OS=Homo sapiens GN=FLAD1 PE=1 SV=1

Length=587
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  sp|Q8R123|FAD1_MOUSE FAD synthase;                                   908    0.0  
  sp|Q8BUV3|GEPH_MOUSE Gephyrin;                                      31.2    0.14 
  sp|Q8BWW9|PKN2_MOUSE Serine/threonine-protein kinase N2;            29.6    0.46 
  sp|Q922H2|PDK3_MOUSE [Pyruvate dehydrogenase [lipoamide]] kinas...  26.2    5.5  


> sp|Q8R123|FAD1_MOUSE FAD synthase;
Length=492

 Score =  908 bits (2346),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 440/491 (90%), Positives = 462/491 (94%), Gaps = 2/491 (0%)

Query  98   MTSRASELSPG--RSVTAGIIIVGDEILKGHTQDTNTFFLCRTLRSLGVQVCRVSVVPDE  155
            M SRASEL PG  RSVTAGIIIVGDEILKGHTQDTNT+FLCRTLRSLGVQVCRVSVVPDE
Sbjct  1    MASRASELPPGSGRSVTAGIIIVGDEILKGHTQDTNTYFLCRTLRSLGVQVCRVSVVPDE  60

Query  156  VATIAAEVTSFSNRFTHVLTAGGIGPTHDDVTFEAVAQAFGDELKPHPKLEAATKALGGE  215
            VATIA+EV SFS RFTHVLTAGGIGPTHDDVTFEAVAQAFG+ELKPHP+L+AA K LGGE
Sbjct  61   VATIASEVNSFSRRFTHVLTAGGIGPTHDDVTFEAVAQAFGEELKPHPELQAAIKTLGGE  120

Query  216  GWEKLSLVPSSARLHYGTDPCTGQPFRFPLVSVRNVYLFPGIPELLRRVLEGMKGLFQNP  275
            GWEKLS+VPSSARLHYGTDP TG PFRFPLVSVRNVYLFPGIPELLRRVLEG+KGLFQN 
Sbjct  121  GWEKLSMVPSSARLHYGTDPRTGHPFRFPLVSVRNVYLFPGIPELLRRVLEGLKGLFQNT  180

Query  276  AVQFHSKELYVAADEASIAPILAEAQAHFGRRLGLGSYPDWGSNYYQVKLTLDSEEEGPL  335
            AVQFH KELYVAA E SIAPIL+EAQAHFGRRL LGSYPDW SNY+QVKL LDSEE+ PL
Sbjct  181  AVQFHLKELYVAASEGSIAPILSEAQAHFGRRLSLGSYPDWSSNYFQVKLILDSEEKEPL  240

Query  336  EECLAYLTARLPQGSLVPYMPNAVEQASEAVYKLAESGSSLGKKVAGALQTIETSLAQYS  395
            EECLAYLTARLPQGSLVPY P+AVE+A EAVYKLAESGS LGKKVAGALQTIET+LAQY 
Sbjct  241  EECLAYLTARLPQGSLVPYQPDAVEKAGEAVYKLAESGSCLGKKVAGALQTIETALAQYH  300

Query  396  LTQLCVGFNGGKDCTALLHLFHAAVQRKLPDVPNPLQILYIRSISPFPELEQFLQDTIKR  455
            L+QLCVGFNGGKDCTALLHLFHAAVQRK PDVP PLQILYIRSISPFPELEQFLQDTIKR
Sbjct  301  LSQLCVGFNGGKDCTALLHLFHAAVQRKFPDVPKPLQILYIRSISPFPELEQFLQDTIKR  360

Query  456  YNLQMLEAEGSMKQALGELQARHPQLEAVLMGTRRTDPYSCSLCPFSPTDPGWPAFMRIN  515
            YNLQ+LEAEG+MKQALGELQ +HPQLEAVLMGTRRTDPYSCSL  FSPTDPGWP+FMRIN
Sbjct  361  YNLQVLEAEGNMKQALGELQEKHPQLEAVLMGTRRTDPYSCSLSHFSPTDPGWPSFMRIN  420

Query  516  PLLDWTYRDIWDFLRQLFVPYCILYDRGYTSLGSRENTVRNPALKCLSPGGHPTYRPAYL  575
            PLLDWTYR+IW+FLRQLFVPYCILYDRGYTSLGSRENT +NPALKCLSPGGHP YRPAYL
Sbjct  421  PLLDWTYRNIWEFLRQLFVPYCILYDRGYTSLGSRENTTQNPALKCLSPGGHPVYRPAYL  480

Query  576  LENEEEERNSR  586
            LENE+EERNSR
Sbjct  481  LENEDEERNSR  491


> sp|Q8BUV3|GEPH_MOUSE Gephyrin;
Length=769

 Score = 31.2 bits (69),  Expect = 0.14, Method: Compositional matrix adjust.
 Identities = 23/93 (25%), Positives = 39/93 (42%), Gaps = 5/93 (5%)

Query  111  VTAGIIIVGDEILKGHTQDTNTFFLCRTLRS---LGVQVCRVSVVPDEVATIAAEVTSFS  167
            +  G++ V D   +   +D +   L   ++    LG  +    +VPDE+  I   +  + 
Sbjct  15   IRVGVLTVSDSCFRNLAEDRSGINLKDLVQDPSLLGGTISAYKIVPDEIEEIKETLIDWC  74

Query  168  NR--FTHVLTAGGIGPTHDDVTFEAVAQAFGDE  198
            +      +LT GG G    DVT EA  +    E
Sbjct  75   DEKELNLILTTGGTGFAPRDVTPEATKEVIERE  107


> sp|Q8BWW9|PKN2_MOUSE Serine/threonine-protein kinase N2;
Length=983

 Score = 29.6 bits (65),  Expect = 0.46, Method: Compositional matrix adjust.
 Identities = 21/105 (20%), Positives = 44/105 (42%), Gaps = 2/105 (2%)

Query  403  FNGGKDCTALLHLFHAAVQRKLPDVPNPLQILYIRSISPFPELEQFLQDTIKRYNLQMLE  462
            F+        L      VQ+KL D+ + ++    + +      E   + T  + NL  ++
Sbjct  24   FSENVSAVQKLDFSDTMVQQKLDDIKDRIKREIRKELKIKEGAENLRKVTTDKKNLAYVD  83

Query  463  AEGSMKQALGELQARHPQLEAVLMGTRRTDPYSCSLCPFSPTDPG  507
                +K++  +L+  H +L+ +      +DP   + CP +P  P 
Sbjct  84   --NILKKSNKKLEELHHKLQELNAHIVVSDPEDSTDCPRTPDTPN  126


> sp|Q922H2|PDK3_MOUSE [Pyruvate dehydrogenase [lipoamide]] kinase 
isozyme 3, mitochondrial;
Length=415

 Score = 26.2 bits (56),  Expect = 5.5, Method: Compositional matrix adjust.
 Identities = 12/26 (46%), Positives = 15/26 (58%), Gaps = 0/26 (0%)

Query  210  KALGGEGWEKLSLVPSSARLHYGTDP  235
            KAL  E +E+L +   SA  HY T P
Sbjct  359  KALSSESFERLPVFNKSAWRHYKTTP  384



Lambda     K      H
   0.320    0.138    0.427 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 

Effective search space used: 393130164


  Database: mouse.fasta
    Posted date:  Mar 26, 2013  2:26 AM
  Number of letters in database: 908,396
  Number of sequences in database:  1,370



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40