RID: YW6T0UFR014 Job Title:Protein Sequence Program: BLASTP Query: unnamed protein product ID: lcl|Query_7512923(amino acid) Length: 539 Database: swissprot Non-redundant UniProtKB/SwissProt sequences Sequences producing significant alignments: Scientific Common Max Total Query E Per. Acc. Description Name Name Taxid Score Score cover Value Ident Len Accession RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Aura virus NA 44158 1023 1023 100% 0.0 100.00 2499 Q86924.3 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Ockelbo virus NA 31699 833 833 86% 0.0 82.33 2515 P27283.2 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Sindbis virus NA 11034 828 828 100% 0.0 74.26 2513 P03317.2 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Getah virus NA 59300 676 676 85% 0.0 67.32 2467 Q5Y389.3 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Sagiyama virus NA 59303 675 675 85% 0.0 67.17 2467 Q9JGL0.3 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Semliki Fore... NA 11033 673 673 85% 0.0 67.10 2432 P08411.2 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Ross river v... NA 11031 664 664 85% 0.0 65.58 2480 P13887.2 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Mayaro virus... NA 374990 650 650 85% 0.0 64.77 2437 Q8QZ73.3 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Chikungunya ... NA 371095 647 647 85% 0.0 65.21 2474 Q5XXP4.1 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... O'nyong-nyon... NA 374989 641 641 85% 0.0 64.13 2513 O90368.1 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... O'nyong-nyon... NA 11028 641 641 85% 0.0 64.35 2514 P13886.2 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Chikungunya ... NA 371094 640 640 85% 0.0 64.05 2474 Q8JUX6.1 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Igbo Ora virus NA 79899 636 636 85% 0.0 63.70 2513 O90370.1 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Venezuelan e... NA 11038 625 625 86% 0.0 62.34 2493 P27282.3 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Venezuelan e... NA 36384 625 625 86% 0.0 62.07 2499 Q9WJC7.3 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Venezuelan e... NA 36385 625 625 86% 0.0 62.34 2493 P36328.2 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Venezuelan e... NA 36382 625 625 86% 0.0 62.07 2485 P36327.3 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Venezuelan e... NA 11036 624 624 86% 0.0 61.85 2497 Q8V294.3 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Western equi... NA 11039 622 622 86% 0.0 63.15 2467 P13896.3 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Eastern equi... NA 374598 620 620 84% 0.0 65.04 2494 Q4QXJ8.3 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Barmah Fores... NA 11020 619 619 86% 0.0 62.58 2411 P87515.3 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Eastern equi... NA 374597 619 619 84% 0.0 64.82 2474 Q306W8.3 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Eastern equi... NA 374596 613 613 84% 0.0 64.60 2471 Q306W6.3 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Sleeping dis... NA 78540 405 405 84% 7e-126 46.34 2593 Q8QL53.1 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Salmon pancr... NA 84589 403 403 83% 6e-125 46.37 2601 Q8JJX1.1 Alignments: >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Aura virus] Sequence ID: Q86924.3 Length: 2499 Range 1: 1 to 539 Score:1023 bits(2644), Expect:0.0, Method:Compositional matrix adjust., Identities:539/539(100%), Positives:539/539(100%), Gaps:0/539(0%) Query 1 MEKPTVHVDVDPQSPFVLQLQKSFPQFEIVAQQVTPNDHANARAFSHLASKLIEHEIPTS 60 MEKPTVHVDVDPQSPFVLQLQKSFPQFEIVAQQVTPNDHANARAFSHLASKLIEHEIPTS Sbjct 1 MEKPTVHVDVDPQSPFVLQLQKSFPQFEIVAQQVTPNDHANARAFSHLASKLIEHEIPTS 60 Query 61 VTILDIGSAPARRMYSEHKYHCVCPMRSPEDPDRLMNYASRLADKAGEITNKRLHDKLAD 120 VTILDIGSAPARRMYSEHKYHCVCPMRSPEDPDRLMNYASRLADKAGEITNKRLHDKLAD Sbjct 61 VTILDIGSAPARRMYSEHKYHCVCPMRSPEDPDRLMNYASRLADKAGEITNKRLHDKLAD 120 Query 121 LKSVLESPDAETGTICFHNDVICRTTAEVSVMQNVYINAPSTIYHQALKGVRKLYWIGFD 180 LKSVLESPDAETGTICFHNDVICRTTAEVSVMQNVYINAPSTIYHQALKGVRKLYWIGFD Sbjct 121 LKSVLESPDAETGTICFHNDVICRTTAEVSVMQNVYINAPSTIYHQALKGVRKLYWIGFD 180 Query 181 TTQFMFSSMAGSYPSYNTNWADERVLEARNIGLCSTKLREGTMGKLSTFRKKALKPGTNV 240 TTQFMFSSMAGSYPSYNTNWADERVLEARNIGLCSTKLREGTMGKLSTFRKKALKPGTNV Sbjct 181 TTQFMFSSMAGSYPSYNTNWADERVLEARNIGLCSTKLREGTMGKLSTFRKKALKPGTNV 240 Query 241 YFSVGSTLYPENRADLQSWHLPSVFHLKGKQSFTCRCDTAVNCEGYVVKKITISPGITGR 300 YFSVGSTLYPENRADLQSWHLPSVFHLKGKQSFTCRCDTAVNCEGYVVKKITISPGITGR Sbjct 241 YFSVGSTLYPENRADLQSWHLPSVFHLKGKQSFTCRCDTAVNCEGYVVKKITISPGITGR 300 Query 301 VNRYTVTNNSEGFLLCKITDTVKGERVSFPVCTYIPPSICDQMTGILATDIQPEDAQKLL 360 VNRYTVTNNSEGFLLCKITDTVKGERVSFPVCTYIPPSICDQMTGILATDIQPEDAQKLL Sbjct 301 VNRYTVTNNSEGFLLCKITDTVKGERVSFPVCTYIPPSICDQMTGILATDIQPEDAQKLL 360 Query 361 VGLNQRIVVNGKTNRNTNTMQNYLLPAVATGLSKWAKERKADCSDEKPLNVRERKLAFGC 420 VGLNQRIVVNGKTNRNTNTMQNYLLPAVATGLSKWAKERKADCSDEKPLNVRERKLAFGC Sbjct 361 VGLNQRIVVNGKTNRNTNTMQNYLLPAVATGLSKWAKERKADCSDEKPLNVRERKLAFGC 420 Query 421 LWAFKTKKIHSFYRPPGTQTIVKVAAEFSAFPMSSVWTTSLPMSlrqkvklllvkktnkp 480 LWAFKTKKIHSFYRPPGTQTIVKVAAEFSAFPMSSVWTTSLPMSLRQKVKLLLVKKTNKP Sbjct 421 LWAFKTKKIHSFYRPPGTQTIVKVAAEFSAFPMSSVWTTSLPMSLRQKVKLLLVKKTNKP 480 Query 481 vvTITDTAVKNAQEAYNeavetaeaeekakalpplkptappvaeDVKCEVTDLVDDAGA 539 VVTITDTAVKNAQEAYNEAVETAEAEEKAKALPPLKPTAPPVAEDVKCEVTDLVDDAGA Sbjct 481 VVTITDTAVKNAQEAYNEAVETAEAEEKAKALPPLKPTAPPVAEDVKCEVTDLVDDAGA 539 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Ockelbo virus] Sequence ID: P27283.2 Length: 2515 Range 1: 1 to 464 Score:833 bits(2151), Expect:0.0, Method:Compositional matrix adjust., Identities:382/464(82%), Positives:420/464(90%), Gaps:0/464(0%) Query 1 MEKPTVHVDVDPQSPFVLQLQKSFPQFEIVAQQVTPNDHANARAFSHLASKLIEHEIPTS 60 MEKP V+VDVDPQSPFV+QLQKSFPQFE+VAQQ TPNDHANARAFSHLASKLIE E+PT+ Sbjct 1 MEKPVVNVDVDPQSPFVVQLQKSFPQFEVVAQQATPNDHANARAFSHLASKLIELEVPTT 60 Query 61 VTILDIGSAPARRMYSEHKYHCVCPMRSPEDPDRLMNYASRLADKAGEITNKRLHDKLAD 120 TILDIGSAPARRM+SEH+YHCVCPMRSPEDPDR+M YAS+LA+KA +ITNK LH+K+ D Sbjct 61 ATILDIGSAPARRMFSEHQYHCVCPMRSPEDPDRMMKYASKLAEKACKITNKNLHEKIKD 120 Query 121 LKSVLESPDAETGTICFHNDVICRTTAEVSVMQNVYINAPSTIYHQALKGVRKLYWIGFD 180 L++VL++PDAET ++CFHNDV C T AE SVMQ+VYINAP TIYHQA+KGVR LYWIGFD Sbjct 121 LRTVLDTPDAETPSLCFHNDVTCNTRAEYSVMQDVYINAPGTIYHQAMKGVRTLYWIGFD 180 Query 181 TTQFMFSSMAGSYPSYNTNWADERVLEARNIGLCSTKLREGTMGKLSTFRKKALKPGTNV 240 TTQFMFS+MAGSYP+YNTNWADE+VLEARNIGLCSTKL EG GKLS RKK LKPG+ V Sbjct 181 TTQFMFSAMAGSYPAYNTNWADEKVLEARNIGLCSTKLSEGRTGKLSIMRKKELKPGSRV 240 Query 241 YFSVGSTLYPENRADLQSWHLPSVFHLKGKQSFTCRCDTAVNCEGYVVKKITISPGITGR 300 YFSVGSTLYPE+RA LQSWHLPSVFHLKGKQS+TCRCDT V+CEGYVVKKITISPGITG Sbjct 241 YFSVGSTLYPEHRASLQSWHLPSVFHLKGKQSYTCRCDTVVSCEGYVVKKITISPGITGE 300 Query 301 VNRYTVTNNSEGFLLCKITDTVKGERVSFPVCTYIPPSICDQMTGILATDIQPEDAQKLL 360 Y VTNNSEGFLLCK+TDTVKGERVSFPVCTYIP +ICDQMTGI+ATDI P+DAQKLL Sbjct 301 TVGYAVTNNSEGFLLCKVTDTVKGERVSFPVCTYIPATICDQMTGIMATDISPDDAQKLL 360 Query 361 VGLNQRIVVNGKTNRNTNTMQNYLLPAVATGLSKWAKERKADCSDEKPLNVRERKLAFGC 420 VGLNQRIV+NGKTNRNTNTMQNYLLP +A G SKWAKERK D +EK L RERKL +GC Sbjct 361 VGLNQRIVINGKTNRNTNTMQNYLLPTIAQGFSKWAKERKEDLDNEKMLGTRERKLTYGC 420 Query 421 LWAFKTKKIHSFYRPPGTQTIVKVAAEFSAFPMSSVWTTSLPMS 464 LWAF+TKK+HSFYRPPGTQT VKV A FSAFPMSSVWTTSLPMS Sbjct 421 LWAFRTKKVHSFYRPPGTQTSVKVPASFSAFPMSSVWTTSLPMS 464 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; AltName: Full=p270 nonstructural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Sindbis virus] Sequence ID: P03317.2 Length: 2513 Range 1: 1 to 540 Score:828 bits(2138), Expect:0.0, Method:Compositional matrix adjust., Identities:401/540(74%), Positives:455/540(84%), Gaps:1/540(0%) Query 1 MEKPTVHVDVDPQSPFVLQLQKSFPQFEIVAQQVTPNDHANARAFSHLASKLIEHEIPTS 60 MEKP V+VDVDPQSPFV+QLQKSFPQFE+VAQQVTPNDHANARAFSHLASKLIE E+PT+ Sbjct 1 MEKPVVNVDVDPQSPFVVQLQKSFPQFEVVAQQVTPNDHANARAFSHLASKLIELEVPTT 60 Query 61 VTILDIGSAPARRMYSEHKYHCVCPMRSPEDPDRLMNYASRLADKAGEITNKRLHDKLAD 120 TILDIGSAPARRM+SEH+YHCVCPMRSPEDPDR+M YAS+LA+KA +ITNK LH+K+ D Sbjct 61 ATILDIGSAPARRMFSEHQYHCVCPMRSPEDPDRMMKYASKLAEKACKITNKNLHEKIKD 120 Query 121 LKSVLESPDAETGTICFHNDVICRTTAEVSVMQNVYINAPSTIYHQALKGVRKLYWIGFD 180 L++VL++PDAET ++CFHNDV C AE SVMQ+VYINAP TIYHQA+KGVR LYWIGFD Sbjct 121 LRTVLDTPDAETPSLCFHNDVTCNMRAEYSVMQDVYINAPGTIYHQAMKGVRTLYWIGFD 180 Query 181 TTQFMFSSMAGSYPSYNTNWADERVLEARNIGLCSTKLREGTMGKLSTFRKKALKPGTNV 240 TTQFMFS+MAGSYP+YNTNWADE+VLEARNIGLCSTKL EG GKLS RKK LKPG+ V Sbjct 181 TTQFMFSAMAGSYPAYNTNWADEKVLEARNIGLCSTKLSEGRTGKLSIMRKKELKPGSRV 240 Query 241 YFSVGSTLYPENRADLQSWHLPSVFHLKGKQSFTCRCDTAVNCEGYVVKKITISPGITGR 300 YFSVGSTLYPE+RA LQSWHLPSVFHL GKQS+TCRCDT V+CEGYVVKKITISPGITG Sbjct 241 YFSVGSTLYPEHRASLQSWHLPSVFHLNGKQSYTCRCDTVVSCEGYVVKKITISPGITGE 300 Query 301 VNRYTVTNNSEGFLLCKITDTVKGERVSFPVCTYIPPSICDQMTGILATDIQPEDAQKLL 360 Y VT+NSEGFLLCK+TDTVKGERVSFPVCTYIP +ICDQMTGI+ATDI P+DAQKLL Sbjct 301 TVGYAVTHNSEGFLLCKVTDTVKGERVSFPVCTYIPATICDQMTGIMATDISPDDAQKLL 360 Query 361 VGLNQRIVVNGKTNRNTNTMQNYLLPAVATGLSKWAKERKADCSDEKPLNVRERKLAFGC 420 VGLNQRIV+NG+TNRNTNTMQNYLLP +A G SKWAKERK D +EK L RERKL +GC Sbjct 361 VGLNQRIVINGRTNRNTNTMQNYLLPIIAQGFSKWAKERKDDLDNEKMLGTRERKLTYGC 420 Query 421 LWAFKTKKIHSFYRPPGTQTIVKVAAEFSAFPMSSVWTTSLPMSlrqkvklllvkktnkp 480 LWAF+TKK+HSFYRPPGTQT VKV A FSAFPMSSVWTTSLPMSLRQK+KL L K + Sbjct 421 LWAFRTKKVHSFYRPPGTQTCVKVPASFSAFPMSSVWTTSLPMSLRQKLKLALQPKKEEK 480 Query 481 vvTITDTAVKNAQEAY-NeavetaeaeekakalpplkptappvaeDVKCEVTDLVDDAGA 539 ++ +++ V A+ A+ + E + + P + A +V CEV L D GA Sbjct 481 LLQVSEELVMEAKAAFEDAQEEARAEKLREALPPLVADKGIEAAAEVVCEVEGLQADIGA 540 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Getah virus] Sequence ID: Q5Y389.3 Length: 2467 Range 1: 3 to 461 Score:676 bits(1744), Expect:0.0, Method:Compositional matrix adjust., Identities:309/459(67%), Positives:374/459(81%), Gaps:1/459(0%) Query 6 VHVDVDPQSPFVLQLQKSFPQFEIVAQQVTPNDHANARAFSHLASKLIEHEIPTSVTILD 65 V VDV+ SPF+ LQK+FP FE+ +QQVTPNDHANARAFSHLA+KLIE E+PT VTILD Sbjct 3 VTVDVEADSPFLKALQKAFPAFEVESQQVTPNDHANARAFSHLATKLIEQEVPTGVTILD 62 Query 66 IGSAPARRMYSEHKYHCVCPMRSPEDPDRLMNYASRLADKAGEITNKRLHDKLADLKSVL 125 +GSAPARR+ S+H YHC+CPM+S EDP+RL NYA +LA +G + +K + K+ DL+ V+ Sbjct 63 VGSAPARRLMSDHTYHCICPMKSAEDPERLANYARKLAKASGTVLDKNVSGKITDLQDVM 122 Query 126 ESPDAETGTICFHNDVICRTTAEVSVMQNVY-INAPSTIYHQALKGVRKLYWIGFDTTQF 184 +PD E+ T C H D CRT AEV+V Q+VY ++AP+++YHQA+KGVR YWIGFDTT F Sbjct 123 ATPDLESPTFCLHTDETCRTRAEVAVYQDVYAVHAPTSLYHQAIKGVRTAYWIGFDTTPF 182 Query 185 MFSSMAGSYPSYNTNWADERVLEARNIGLCSTKLREGTMGKLSTFRKKALKPGTNVYFSV 244 MF ++AG+YP+Y+TNWADE+VL+ARNIGLC+T L EG GKLS RKK L+P V FSV Sbjct 183 MFEALAGAYPAYSTNWADEQVLQARNIGLCATGLSEGRRGKLSIMRKKCLRPSDRVMFSV 242 Query 245 GSTLYPENRADLQSWHLPSVFHLKGKQSFTCRCDTAVNCEGYVVKKITISPGITGRVNRY 304 GSTLY E+R L+SWHLPSVFHLKGK SFTCRCDT V+CEGYVVKKITISPGI G+ Y Sbjct 243 GSTLYTESRKLLRSWHLPSVFHLKGKNSFTCRCDTVVSCEGYVVKKITISPGIYGKTVDY 302 Query 305 TVTNNSEGFLLCKITDTVKGERVSFPVCTYIPPSICDQMTGILATDIQPEDAQKLLVGLN 364 VT+++EGFL+CKITDTV+GERVSFPVCTY+P +ICDQMTGILATD+ PEDAQKLLVGLN Sbjct 303 AVTHHAEGFLMCKITDTVRGERVSFPVCTYVPATICDQMTGILATDVTPEDAQKLLVGLN 362 Query 365 QRIVVNGKTNRNTNTMQNYLLPAVATGLSKWAKERKADCSDEKPLNVRERKLAFGCLWAF 424 QRIVVNG+T RNTNTM+NYLLP VA SKWA+E +AD DEKPL RER L CLWAF Sbjct 363 QRIVVNGRTQRNTNTMKNYLLPVVAQAFSKWAREARADMEDEKPLGTRERTLTCCCLWAF 422 Query 425 KTKKIHSFYRPPGTQTIVKVAAEFSAFPMSSVWTTSLPM 463 K+ KIH+ Y+ P TQTIVKV + F +F + S+W++SL M Sbjct 423 KSHKIHTMYKRPETQTIVKVPSTFDSFVIPSLWSSSLSM 461 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Sagiyama virus] Sequence ID: Q9JGL0.3 Length: 2467 Range 1: 3 to 462 Score:675 bits(1741), Expect:0.0, Method:Compositional matrix adjust., Identities:309/460(67%), Positives:374/460(81%), Gaps:1/460(0%) Query 6 VHVDVDPQSPFVLQLQKSFPQFEIVAQQVTPNDHANARAFSHLASKLIEHEIPTSVTILD 65 V VDV+ SPF+ LQK+FP FE+ +QQVTPNDHANARAFSHLA+KLIE E+PT VTILD Sbjct 3 VTVDVEADSPFLKALQKAFPAFEVESQQVTPNDHANARAFSHLATKLIEQEVPTGVTILD 62 Query 66 IGSAPARRMYSEHKYHCVCPMRSPEDPDRLMNYASRLADKAGEITNKRLHDKLADLKSVL 125 +GSAPARR+ S+H YHC+CPM+S EDP+RL NYA +LA +G + +K + K+ DL+ V+ Sbjct 63 VGSAPARRLMSDHTYHCICPMKSAEDPERLANYARKLAKASGTVLDKNVSGKITDLQDVM 122 Query 126 ESPDAETGTICFHNDVICRTTAEVSVMQNVY-INAPSTIYHQALKGVRKLYWIGFDTTQF 184 +PD E+ T C H D CRT AEV+V Q+VY ++AP+++YHQA+KGVR YWIGFDTT F Sbjct 123 ATPDLESPTFCLHTDETCRTRAEVAVYQDVYAVHAPTSLYHQAIKGVRTAYWIGFDTTPF 182 Query 185 MFSSMAGSYPSYNTNWADERVLEARNIGLCSTKLREGTMGKLSTFRKKALKPGTNVYFSV 244 MF ++AG+YP+Y+TNWADE+VL+ARNIGLC+T L EG GKLS RKK L+P V FSV Sbjct 183 MFEALAGAYPAYSTNWADEQVLQARNIGLCATGLSEGRRGKLSIMRKKCLRPSDRVMFSV 242 Query 245 GSTLYPENRADLQSWHLPSVFHLKGKQSFTCRCDTAVNCEGYVVKKITISPGITGRVNRY 304 GSTLY E+R L+SWHLPSVFHLKGK SFTCRCDT V+CEGYVVKKITISPGI G+ Y Sbjct 243 GSTLYTESRKLLRSWHLPSVFHLKGKNSFTCRCDTVVSCEGYVVKKITISPGIYGKTVDY 302 Query 305 TVTNNSEGFLLCKITDTVKGERVSFPVCTYIPPSICDQMTGILATDIQPEDAQKLLVGLN 364 VT+++EGFL+CKITDTV+GERVSFPVCTY+P +ICDQMTGILATD+ PEDAQKLLVGLN Sbjct 303 AVTHHAEGFLVCKITDTVRGERVSFPVCTYVPATICDQMTGILATDVTPEDAQKLLVGLN 362 Query 365 QRIVVNGKTNRNTNTMQNYLLPAVATGLSKWAKERKADCSDEKPLNVRERKLAFGCLWAF 424 QRIVVNG+T RNTNTM+NYLLP VA SKWA+E +AD DEKPL RER L CLWAF Sbjct 363 QRIVVNGRTQRNTNTMKNYLLPVVAQAFSKWAREARADMEDEKPLGTRERTLTCCCLWAF 422 Query 425 KTKKIHSFYRPPGTQTIVKVAAEFSAFPMSSVWTTSLPMS 464 K+ KIH+ Y+ P TQTIVKV + F +F + S+W++SL M Sbjct 423 KSHKIHTMYKRPETQTIVKVPSTFDSFVIPSLWSSSLSMG 462 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Semliki Forest virus] Sequence ID: P08411.2 Length: 2432 Range 1: 5 to 463 Score:673 bits(1737), Expect:0.0, Method:Compositional matrix adjust., Identities:308/459(67%), Positives:373/459(81%), Gaps:1/459(0%) Query 6 VHVDVDPQSPFVLQLQKSFPQFEIVAQQVTPNDHANARAFSHLASKLIEHEIPTSVTILD 65 VHVD++ SPF+ LQK+FP FE+ + QVTPNDHANARAFSHLA+KLIE E ILD Sbjct 5 VHVDIEADSPFIKSLQKAFPSFEVESLQVTPNDHANARAFSHLATKLIEQETDKDTLILD 64 Query 66 IGSAPARRMYSEHKYHCVCPMRSPEDPDRLMNYASRLADKAGEITNKRLHDKLADLKSVL 125 IGSAP+RRM S HKYHCVCPMRS EDP+RL+ YA +LA +G++ ++ + K+ DL++V+ Sbjct 65 IGSAPSRRMMSTHKYHCVCPMRSAEDPERLVCYAKKLAAASGKVLDREIAGKITDLQTVM 124 Query 126 ESPDAETGTICFHNDVICRTTAEVSVMQNVY-INAPSTIYHQALKGVRKLYWIGFDTTQF 184 +PDAE+ T C H DV CRT AEV+V Q+VY ++AP+++YHQA+KGVR YWIGFDTT F Sbjct 125 ATPDAESPTFCLHTDVTCRTAAEVAVYQDVYAVHAPTSLYHQAMKGVRTAYWIGFDTTPF 184 Query 185 MFSSMAGSYPSYNTNWADERVLEARNIGLCSTKLREGTMGKLSTFRKKALKPGTNVYFSV 244 MF ++AG+YP+Y TNWADE+VL+ARNIGLC+ L EG +GKLS RKK LKP V FSV Sbjct 185 MFDALAGAYPTYATNWADEQVLQARNIGLCAASLTEGRLGKLSILRKKQLKPCDTVMFSV 244 Query 245 GSTLYPENRADLQSWHLPSVFHLKGKQSFTCRCDTAVNCEGYVVKKITISPGITGRVNRY 304 GSTLY E+R L+SWHLPSVFHLKGKQSFTCRCDT V+CEGYVVKKIT+ PG+ G+ Y Sbjct 245 GSTLYTESRKLLRSWHLPSVFHLKGKQSFTCRCDTIVSCEGYVVKKITMCPGLYGKTVGY 304 Query 305 TVTNNSEGFLLCKITDTVKGERVSFPVCTYIPPSICDQMTGILATDIQPEDAQKLLVGLN 364 VT ++EGFL+CK TDTVKGERVSFPVCTY+P +ICDQMTGILATD+ PEDAQKLLVGLN Sbjct 305 AVTYHAEGFLVCKTTDTVKGERVSFPVCTYVPSTICDQMTGILATDVTPEDAQKLLVGLN 364 Query 365 QRIVVNGKTNRNTNTMQNYLLPAVATGLSKWAKERKADCSDEKPLNVRERKLAFGCLWAF 424 QRIVVNG+T RNTNTM+NYLLP VA SKWA+E KAD DEKPL VRER L CLWAF Sbjct 365 QRIVVNGRTQRNTNTMKNYLLPIVAVAFSKWAREYKADLDDEKPLGVRERSLTCCCLWAF 424 Query 425 KTKKIHSFYRPPGTQTIVKVAAEFSAFPMSSVWTTSLPM 463 KT+K+H+ Y+ P TQTIVKV +EF++F + S+W+T L + Sbjct 425 KTRKMHTMYKKPDTQTIVKVPSEFNSFVIPSLWSTGLAI 463 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Ross river virus (STRAIN NB5092)] Sequence ID: P13887.2 Length: 2480 Range 1: 3 to 461 Score:664 bits(1713), Expect:0.0, Method:Compositional matrix adjust., Identities:301/459(66%), Positives:368/459(80%), Gaps:0/459(0%) Query 6 VHVDVDPQSPFVLQLQKSFPQFEIVAQQVTPNDHANARAFSHLASKLIEHEIPTSVTILD 65 V VDV+ SPF+ LQK+FP FE+ +QQVTPNDHANARAFSHLA+KLIE E+P ++TILD Sbjct 3 VTVDVEADSPFLKALQKAFPAFEVESQQVTPNDHANARAFSHLATKLIEQEVPANITILD 62 Query 66 IGSAPARRMYSEHKYHCVCPMRSPEDPDRLMNYASRLADKAGEITNKRLHDKLADLKSVL 125 +GSAPARR+ S+H YHC+CPM+S EDP+RL NYA +LA AGE+ +K + K+ DL+ V+ Sbjct 63 VGSAPARRLMSDHSYHCICPMKSAEDPERLANYARKLAKTAGEVLDKNVSGKITDLQDVM 122 Query 126 ESPDAETGTICFHNDVICRTTAEVSVMQNVYINAPSTIYHQALKGVRKLYWIGFDTTQFM 185 +PD E+ T C H D CRT AEV+V Q+V +AP+++YHQA+KGVR +YWIGFDTT FM Sbjct 123 ATPDLESPTFCLHTDETCRTRAEVAVYQDVXXHAPTSLYHQAMKGVRTVYWIGFDTTPFM 182 Query 186 FSSMAGSYPSYNTNWADERVLEARNIGLCSTKLREGTMGKLSTFRKKALKPGTNVYFSVG 245 F +AG+YP+Y+TNWADE+VL+ARNIGLC+T L EG GK+S RKK L+P FSVG Sbjct 183 FEVVAGAYPTYSTNWADEQVLQARNIGLCATSLSEGHRGKISIMRKKRLRPSDRXMFSVG 242 Query 246 STLYPENRADLQSWHLPSVFHLKGKQSFTCRCDTAVNCEGYVVKKITISPGITGRVNRYT 305 TLY E+R L+SWHLPSVFHLKGK SFTCRCDT V+CEGYVVKKIT+SPG G+ Y Sbjct 243 XTLYIESRRLLKSWHLPSVFHLKGKNSFTCRCDTIVSCEGYVVKKITMSPGTYGKTVGYA 302 Query 306 VTNNSEGFLLCKITDTVKGERVSFPVCTYIPPSICDQMTGILATDIQPEDAQKLLVGLNQ 365 VT+++EGFL+CK+TDTV+GERVSFPVCTY+P +ICDQMTGILATD+ PEDAQKLLVGLNQ Sbjct 303 VTHHAEGFLMCKVTDTVRGERVSFPVCTYVPATICDQMTGILATDVTPEDAQKLLVGLNQ 362 Query 366 RIVVNGKTNRNTNTMQNYLLPAVATGLSKWAKERKADCSDEKPLNVRERKLAFGCLWAFK 425 RIVVNG+T RNTNTM+NYLLP VA SKWA+E KAD DEKPL RER L CLWAFK Sbjct 363 RIVVNGRTQRNTNTMKNYLLPVVAQAFSKWAREAKADMEDEKPLGTRERTLTCCCLWAFK 422 Query 426 TKKIHSFYRPPGTQTIVKVAAEFSAFPMSSVWTTSLPMS 464 K H+ Y+ P TQTIVKV + F +F + S+W++SL + Sbjct 423 NHKTHTMYKRPDTQTIVKVPSTFDSFVIPSLWSSSLSIG 461 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Mayaro virus (strain Brazil)] Sequence ID: Q8QZ73.3 Length: 2437 Range 1: 4 to 460 Score:650 bits(1677), Expect:0.0, Method:Compositional matrix adjust., Identities:296/457(65%), Positives:366/457(80%), Gaps:1/457(0%) Query 6 VHVDVDPQSPFVLQLQKSFPQFEIVAQQVTPNDHANARAFSHLASKLIEHEIPTSVTILD 65 V VD++ +SPF+ LQ++FP FE+ AQQVTPNDHANARAFSHLA+KLIE E ILD Sbjct 4 VFVDIEAESPFLKSLQRAFPAFEVEAQQVTPNDHANARAFSHLATKLIEQETEKDTLILD 63 Query 66 IGSAPARRMYSEHKYHCVCPMRSPEDPDRLMNYASRLADKAGEITNKRLHDKLADLKSVL 125 IGSAPARRM SEH YHCVCPMRS EDP+RL+ YA +LA +GE+ ++ + K+ DL+SV+ Sbjct 64 IGSAPARRMMSEHTYHCVCPMRSAEDPERLLYYARKLAKASGEVVDRNIAAKIDDLQSVM 123 Query 126 ESPDAETGTICFHNDVICRTTAEVSVMQNVY-INAPSTIYHQALKGVRKLYWIGFDTTQF 184 +PD E+ T C H D CRT AEV+V Q+VY ++AP+++Y QA+KGVR YWIGFDTT F Sbjct 124 ATPDNESRTFCLHTDQTCRTQAEVAVYQDVYAVHAPTSLYFQAMKGVRTAYWIGFDTTPF 183 Query 185 MFSSMAGSYPSYNTNWADERVLEARNIGLCSTKLREGTMGKLSTFRKKALKPGTNVYFSV 244 MF +MAG+YP+Y TNWADE+VL+ARNIGLCS L EG +GKLS RKK + P + FSV Sbjct 184 MFDTMAGAYPTYATNWADEQVLKARNIGLCSASLTEGHLGKLSIMRKKKMTPSDQIMFSV 243 Query 245 GSTLYPENRADLQSWHLPSVFHLKGKQSFTCRCDTAVNCEGYVVKKITISPGITGRVNRY 304 GSTLY E+R L+SWHLPSVFHLKG+QS+TCRCDT V+CEGYVVKKIT+SPG+ G+ + Y Sbjct 244 GSTLYIESRRLLKSWHLPSVFHLKGRQSYTCRCDTIVSCEGYVVKKITMSPGVFGKTSGY 303 Query 305 TVTNNSEGFLLCKITDTVKGERVSFPVCTYIPPSICDQMTGILATDIQPEDAQKLLVGLN 364 VT+++EGFL+CK TDT+ GERVSFP+CTY+P +ICDQMTGILAT++ PEDAQKLLVGLN Sbjct 304 AVTHHAEGFLVCKTTDTIAGERVSFPICTYVPSTICDQMTGILATEVTPEDAQKLLVGLN 363 Query 365 QRIVVNGKTNRNTNTMQNYLLPAVATGLSKWAKERKADCSDEKPLNVRERKLAFGCLWAF 424 QRIVVNG+T RNTNTM+NYLLP V+ SKWAKE + D DEK + +RER L CLWAF Sbjct 364 QRIVVNGRTQRNTNTMKNYLLPVVSQAFSKWAKEYRLDQEDEKNMGMRERTLTCCCLWAF 423 Query 425 KTKKIHSFYRPPGTQTIVKVAAEFSAFPMSSVWTTSL 461 KT K H+ Y+ P TQTIVKV +EF++F + S+W+ L Sbjct 424 KTHKNHTMYKKPDTQTIVKVPSEFNSFVIPSLWSAGL 460 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Chikungunya virus strain Senegal 37997] Sequence ID: Q5XXP4.1 Length: 2474 Range 1: 4 to 460 Score:647 bits(1668), Expect:0.0, Method:Compositional matrix adjust., Identities:298/457(65%), Positives:366/457(80%), Gaps:1/457(0%) Query 6 VHVDVDPQSPFVLQLQKSFPQFEIVAQQVTPNDHANARAFSHLASKLIEHEIPTSVTILD 65 V+VD+D S F+ LQ+++P FE+ +QVTPNDHANARAFSHLA KLIE EI TILD Sbjct 4 VYVDIDADSAFLKALQRAYPMFEVEPRQVTPNDHANARAFSHLAIKLIEQEIDPDSTILD 63 Query 66 IGSAPARRMYSEHKYHCVCPMRSPEDPDRLMNYASRLADKAGEITNKRLHDKLADLKSVL 125 IGSAPARRM S+ KYHCVCPMRS EDP+RL NYA +LA AG++ ++ + +K+ DL++V+ Sbjct 64 IGSAPARRMMSDRKYHCVCPMRSAEDPERLANYARKLASAAGKVLDRNISEKIGDLQAVM 123 Query 126 ESPDAETGTICFHNDVICRTTAEVSVMQNVY-INAPSTIYHQALKGVRKLYWIGFDTTQF 184 PDAET T C H DV CR A+V++ Q+VY ++AP+++YHQA+KGVR YWIGFDTT F Sbjct 124 AVPDAETPTFCLHTDVSCRQRADVAIYQDVYAVHAPTSLYHQAIKGVRVAYWIGFDTTPF 183 Query 185 MFSSMAGSYPSYNTNWADERVLEARNIGLCSTKLREGTMGKLSTFRKKALKPGTNVYFSV 244 M+++MAG+YPSY+TNWADE+VL+A+NIGLCST L EG GKLS R K +KP V FSV Sbjct 184 MYNAMAGAYPSYSTNWADEQVLKAKNIGLCSTDLTEGRRGKLSIMRGKKMKPCDRVLFSV 243 Query 245 GSTLYPENRADLQSWHLPSVFHLKGKQSFTCRCDTAVNCEGYVVKKITISPGITGRVNRY 304 GSTLYPE+R L+SWHLPSVFHLKGK SFTCRCDT V+CEGYVVK+ITISPG+ G+ Y Sbjct 244 GSTLYPESRKLLKSWHLPSVFHLKGKLSFTCRCDTVVSCEGYVVKRITISPGLYGKTTGY 303 Query 305 TVTNNSEGFLLCKITDTVKGERVSFPVCTYIPPSICDQMTGILATDIQPEDAQKLLVGLN 364 VT++++GFL+CK TDTV GERVSF VCTY+P +ICDQMTGILAT++ PEDAQKLLVGLN Sbjct 304 AVTHHADGFLMCKTTDTVDGERVSFSVCTYVPATICDQMTGILATEVTPEDAQKLLVGLN 363 Query 365 QRIVVNGKTNRNTNTMQNYLLPAVATGLSKWAKERKADCSDEKPLNVRERKLAFGCLWAF 424 QRIVVNG+T RNTNTM+NYLLP VA SKWAKE + D DEK L +RER L CLWAF Sbjct 364 QRIVVNGRTQRNTNTMKNYLLPVVAQAFSKWAKECRKDMEDEKLLGIRERTLTCCCLWAF 423 Query 425 KTKKIHSFYRPPGTQTIVKVAAEFSAFPMSSVWTTSL 461 K +K H+ Y+ P TQ+I KV AEF +F + S+W++ L Sbjct 424 KKQKTHTVYKRPDTQSIQKVPAEFDSFVVPSLWSSGL 460 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [O'nyong-nyong virus strain SG650] Sequence ID: O90368.1 Length: 2513 Range 1: 3 to 462 Score:641 bits(1653), Expect:0.0, Method:Compositional matrix adjust., Identities:295/460(64%), Positives:364/460(79%), Gaps:1/460(0%) Query 5 TVHVDVDPQSPFVLQLQKSFPQFEIVAQQVTPNDHANARAFSHLASKLIEHEIPTSVTIL 64 +V+VD+D S F+ LQ+++P FE+ +QVTPNDHANARAFSHLA KLIE EI TIL Sbjct 3 SVYVDIDADSAFLKALQRAYPMFEVEPKQVTPNDHANARAFSHLAIKLIEQEIDPDSTIL 62 Query 65 DIGSAPARRMYSEHKYHCVCPMRSPEDPDRLMNYASRLADKAGEITNKRLHDKLADLKSV 124 DIG APARRM S+ KYHCVCPMRS EDP+RL NYA +LA AG++T+K + K+ DL++V Sbjct 63 DIGPAPARRMMSDRKYHCVCPMRSAEDPERLANYARKLASAAGKVTDKNISGKINDLQAV 122 Query 125 LESPDAETGTICFHNDVICRTTAEVSVMQNVY-INAPSTIYHQALKGVRKLYWIGFDTTQ 183 + P+ ET T C H D C+ +V++ Q+VY ++AP+++YHQA+KGVR YWIGFDTT Sbjct 123 MAVPNMETSTFCLHTDATCKQRGDVAIYQDVYAVHAPTSLYHQAIKGVRVAYWIGFDTTP 182 Query 184 FMFSSMAGSYPSYNTNWADERVLEARNIGLCSTKLREGTMGKLSTFRKKALKPGTNVYFS 243 FM+++MAG+YPSY+TNWADE+VL+A+NIGLCST L EG GKLS R K LKP V FS Sbjct 183 FMYNAMAGAYPSYSTNWADEQVLKAKNIGLCSTDLSEGRRGKLSIMRGKKLKPCDRVLFS 242 Query 244 VGSTLYPENRADLQSWHLPSVFHLKGKQSFTCRCDTAVNCEGYVVKKITISPGITGRVNR 303 VGSTLYPE+R LQSWHLPSVFHLKGK SFTCRCDT V+CEGYVVK++T+SPGI G+ + Sbjct 243 VGSTLYPESRKLLQSWHLPSVFHLKGKLSFTCRCDTIVSCEGYVVKRVTMSPGIYGKTSG 302 Query 304 YTVTNNSEGFLLCKITDTVKGERVSFPVCTYIPPSICDQMTGILATDIQPEDAQKLLVGL 363 Y VT++++GFL+CK TDTV GERVSF VCTY+P +ICDQMTGILAT++ PEDAQKLLVGL Sbjct 303 YAVTHHADGFLMCKTTDTVDGERVSFSVCTYVPATICDQMTGILATEVTPEDAQKLLVGL 362 Query 364 NQRIVVNGKTNRNTNTMQNYLLPAVATGLSKWAKERKADCSDEKPLNVRERKLAFGCLWA 423 NQRIVVNG+T RNTNTM+NYLLP VA SKWAKE + D DEK L VRER L CLWA Sbjct 363 NQRIVVNGRTQRNTNTMKNYLLPIVAQAFSKWAKECRKDMEDEKLLGVRERTLTCCCLWA 422 Query 424 FKTKKIHSFYRPPGTQTIVKVAAEFSAFPMSSVWTTSLPM 463 F+ K H+ Y+ P TQ+I KV AEF +F + S+W++ L + Sbjct 423 FRKHKTHTVYKRPDTQSIQKVPAEFDSFVIPSLWSSGLSI 462 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [O'nyong-nyong virus strain Gulu] Sequence ID: P13886.2 Length: 2514 Range 1: 3 to 462 Score:641 bits(1653), Expect:0.0, Method:Compositional matrix adjust., Identities:296/460(64%), Positives:364/460(79%), Gaps:1/460(0%) Query 5 TVHVDVDPQSPFVLQLQKSFPQFEIVAQQVTPNDHANARAFSHLASKLIEHEIPTSVTIL 64 +V+VD+D S F+ LQ+++P FE+ +QVTPNDHANARAFSHLA KLIE EI TIL Sbjct 3 SVYVDIDADSAFLKALQQAYPMFEVEPKQVTPNDHANARAFSHLAIKLIEQEIDPDSTIL 62 Query 65 DIGSAPARRMYSEHKYHCVCPMRSPEDPDRLMNYASRLADKAGEITNKRLHDKLADLKSV 124 DIGSAPARRM S+ KYHCVCPMRS EDP+RL NYA +LA AG++T+K + K+ DL++V Sbjct 63 DIGSAPARRMMSDRKYHCVCPMRSAEDPERLANYARKLASAAGKVTDKNISGKINDLQAV 122 Query 125 LESPDAETGTICFHNDVICRTTAEVSVMQNVY-INAPSTIYHQALKGVRKLYWIGFDTTQ 183 + P+ ET T C H D C+ +V++ Q+VY ++AP+++YHQA+KGVR YWIGFDTT Sbjct 123 MAVPNMETSTFCLHTDATCKQRGDVAIYQDVYAVHAPTSLYHQAIKGVRVAYWIGFDTTP 182 Query 184 FMFSSMAGSYPSYNTNWADERVLEARNIGLCSTKLREGTMGKLSTFRKKALKPGTNVYFS 243 FM+++MAG+YPSY+TNWADE+VL+A+NIGLCST L EG GKLS R K LKP V FS Sbjct 183 FMYNAMAGAYPSYSTNWADEQVLKAKNIGLCSTDLSEGRRGKLSIMRGKKLKPCDRVLFS 242 Query 244 VGSTLYPENRADLQSWHLPSVFHLKGKQSFTCRCDTAVNCEGYVVKKITISPGITGRVNR 303 VGSTLYPE+R LQSWHLPSVFHLKGK SFTCRCDT V+CEGYVVK++T+SPGI G+ + Sbjct 243 VGSTLYPESRKLLQSWHLPSVFHLKGKLSFTCRCDTIVSCEGYVVKRVTMSPGIYGKTSG 302 Query 304 YTVTNNSEGFLLCKITDTVKGERVSFPVCTYIPPSICDQMTGILATDIQPEDAQKLLVGL 363 Y VT+++ GFL+CK TDTV GERVSF VCTY+P +ICDQMTGILAT++ PEDAQKLLVGL Sbjct 303 YAVTHHAGGFLMCKTTDTVDGERVSFSVCTYVPATICDQMTGILATEVTPEDAQKLLVGL 362 Query 364 NQRIVVNGKTNRNTNTMQNYLLPAVATGLSKWAKERKADCSDEKPLNVRERKLAFGCLWA 423 NQRIVVNG+T RNTNTM+NYLLP VA SKWAKE + D DEK L VRER L CLWA Sbjct 363 NQRIVVNGRTQRNTNTMKNYLLPIVAQAFSKWAKECRKDMEDEKLLGVRERTLTCCCLWA 422 Query 424 FKTKKIHSFYRPPGTQTIVKVAAEFSAFPMSSVWTTSLPM 463 F+ K H+ Y+ P TQ+I KV AEF +F + S+W++ L + Sbjct 423 FRKHKTHTVYKRPDTQSIQKVPAEFDSFVIPSLWSSGLSI 462 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Chikungunya virus strain S27-African prototype] Sequence ID: Q8JUX6.1 Length: 2474 Range 1: 4 to 462 Score:640 bits(1652), Expect:0.0, Method:Compositional matrix adjust., Identities:294/459(64%), Positives:365/459(79%), Gaps:1/459(0%) Query 6 VHVDVDPQSPFVLQLQKSFPQFEIVAQQVTPNDHANARAFSHLASKLIEHEIPTSVTILD 65 V+VD+D S F+ LQ+++P FE+ +QVTPNDHANARAFSHLA KLIE EI TILD Sbjct 4 VYVDIDADSAFLKALQRAYPMFEVEPRQVTPNDHANARAFSHLAIKLIEQEIDPDSTILD 63 Query 66 IGSAPARRMYSEHKYHCVCPMRSPEDPDRLMNYASRLADKAGEITNKRLHDKLADLKSVL 125 IGSAPARRM S+ KYHCVCPMRS EDP+RL NYA +LA AG++ ++ + K+ DL++V+ Sbjct 64 IGSAPARRMMSDRKYHCVCPMRSAEDPERLANYARKLASAAGKVLDRNISGKIGDLQAVM 123 Query 126 ESPDAETGTICFHNDVICRTTAEVSVMQNVY-INAPSTIYHQALKGVRKLYWIGFDTTQF 184 PD ET T C H DV CR A+V++ Q+VY ++AP+++YHQA+KGVR YW+GFDTT F Sbjct 124 AVPDTETPTFCLHTDVSCRQRADVAIYQDVYAVHAPTSLYHQAIKGVRLAYWVGFDTTPF 183 Query 185 MFSSMAGSYPSYNTNWADERVLEARNIGLCSTKLREGTMGKLSTFRKKALKPGTNVYFSV 244 M+++MAG+YPSY+TNWADE+VL+A+NIGLCST L EG GKLS R K L+P V FSV Sbjct 184 MYNAMAGAYPSYSTNWADEQVLKAKNIGLCSTDLTEGRRGKLSIMRGKKLEPCDRVLFSV 243 Query 245 GSTLYPENRADLQSWHLPSVFHLKGKQSFTCRCDTAVNCEGYVVKKITISPGITGRVNRY 304 GSTLYPE+R L+SWHLPSVFHLKGK SFTCRCDT V+CEGYVVK+IT+SPG+ G+ Y Sbjct 244 GSTLYPESRKLLKSWHLPSVFHLKGKLSFTCRCDTVVSCEGYVVKRITMSPGLYGKTTGY 303 Query 305 TVTNNSEGFLLCKITDTVKGERVSFPVCTYIPPSICDQMTGILATDIQPEDAQKLLVGLN 364 VT++++GFL+CK TDTV GERVSF VCTY+P +ICDQMTGILAT++ PEDAQKLLVGLN Sbjct 304 AVTHHADGFLMCKTTDTVDGERVSFSVCTYVPATICDQMTGILATEVTPEDAQKLLVGLN 363 Query 365 QRIVVNGKTNRNTNTMQNYLLPAVATGLSKWAKERKADCSDEKPLNVRERKLAFGCLWAF 424 QRIVVNG+T RNTNTM+NY++P VA SKWAKE + D DEK L VRER L CLWAF Sbjct 364 QRIVVNGRTQRNTNTMKNYMIPVVAQAFSKWAKECRKDMEDEKLLGVRERTLTCCCLWAF 423 Query 425 KTKKIHSFYRPPGTQTIVKVAAEFSAFPMSSVWTTSLPM 463 K +K H+ Y+ P TQ+I KV AEF +F + S+W++ L + Sbjct 424 KKQKTHTVYKRPDTQSIQKVQAEFDSFVVPSLWSSGLSI 462 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Igbo Ora virus] Sequence ID: O90370.1 Length: 2513 Range 1: 3 to 462 Score:636 bits(1641), Expect:0.0, Method:Compositional matrix adjust., Identities:293/460(64%), Positives:362/460(78%), Gaps:1/460(0%) Query 5 TVHVDVDPQSPFVLQLQKSFPQFEIVAQQVTPNDHANARAFSHLASKLIEHEIPTSVTIL 64 +V+VD+D S F+ LQ+++P FE+ +QVTPNDHANARAFSHLA KLIE EI TIL Sbjct 3 SVYVDIDADSAFLKALQRAYPMFEVEPKQVTPNDHANARAFSHLAIKLIEQEIDPGSTIL 62 Query 65 DIGSAPARRMYSEHKYHCVCPMRSPEDPDRLMNYASRLADKAGEITNKRLHDKLADLKSV 124 IGSAPARRM S+ KYHCVCPMRS EDP+RL NYA +LA AG++T+K + K+ DL++V Sbjct 63 GIGSAPARRMMSDRKYHCVCPMRSAEDPERLANYARKLASAAGKVTDKNISGKINDLQAV 122 Query 125 LESPDAETGTICFHNDVICRTTAEVSVMQNVY-INAPSTIYHQALKGVRKLYWIGFDTTQ 183 + P+ ET T C H D C+ +V++ Q+VY ++AP+++YHQA+KGV YWIGFDTT Sbjct 123 MAVPNMETSTFCLHTDATCKQRGDVAIYQDVYAVHAPTSLYHQAIKGVHVAYWIGFDTTP 182 Query 184 FMFSSMAGSYPSYNTNWADERVLEARNIGLCSTKLREGTMGKLSTFRKKALKPGTNVYFS 243 FM+++MAG+YPSY+TNWADE+VL+A+NIGLCST L EG GKLS R K KP V FS Sbjct 183 FMYNAMAGAYPSYSTNWADEQVLKAKNIGLCSTDLSEGRRGKLSIMRGKKFKPCDRVLFS 242 Query 244 VGSTLYPENRADLQSWHLPSVFHLKGKQSFTCRCDTAVNCEGYVVKKITISPGITGRVNR 303 VGSTLYPE+R LQSWHLPSVFHLKGK SFTCRCDT V+CEGYVVK++T+SPGI G+ + Sbjct 243 VGSTLYPESRKLLQSWHLPSVFHLKGKLSFTCRCDTIVSCEGYVVKRVTMSPGIYGKTSG 302 Query 304 YTVTNNSEGFLLCKITDTVKGERVSFPVCTYIPPSICDQMTGILATDIQPEDAQKLLVGL 363 Y VT++++GFL+CK TDTV GERVSF VCTY+P +ICDQMTGILAT++ PEDAQKLLVGL Sbjct 303 YAVTHHADGFLMCKTTDTVDGERVSFSVCTYVPATICDQMTGILATEVTPEDAQKLLVGL 362 Query 364 NQRIVVNGKTNRNTNTMQNYLLPAVATGLSKWAKERKADCSDEKPLNVRERKLAFGCLWA 423 NQRIVVNG+T RNTNTM+NYLLP VA SKWAKE + D DEK L VRER L CLWA Sbjct 363 NQRIVVNGRTQRNTNTMKNYLLPIVAQAFSKWAKECRKDMEDEKLLGVRERTLTCCCLWA 422 Query 424 FKTKKIHSFYRPPGTQTIVKVAAEFSAFPMSSVWTTSLPM 463 F+ K H+ Y+ P TQ+I KV AEF +F + S+W++ L + Sbjct 423 FRKHKTHTVYKRPDTQSIQKVPAEFDSFVIPSLWSSGLSI 462 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Venezuelan equine encephalitis virus (strain Trinidad donkey)] Sequence ID: P27282.3 Length: 2493 Range 1: 1 to 460 Score:625 bits(1613), Expect:0.0, Method:Compositional matrix adjust., Identities:288/462(62%), Positives:360/462(77%), Gaps:3/462(0%) Query 1 MEKPTVHVDVDPQSPFVLQLQKSFPQFEIVAQQVTPNDHANARAFSHLASKLIEHEIPTS 60 MEK VHVD++ SPF+ LQ+SFPQFE+ A+QVT NDHANARAFSHLASKLIE E+ S Sbjct 1 MEK--VHVDIEEDSPFLRALQRSFPQFEVEAKQVTDNDHANARAFSHLASKLIETEVDPS 58 Query 61 VTILDIGSAPARRMYSEHKYHCVCPMRSPEDPDRLMNYASRLADKAGEITNKRLHDKLAD 120 TILDIGSAPARRMYS+HKYHC+CPMR EDPDRL YA++L EIT+K L K+ + Sbjct 59 DTILDIGSAPARRMYSKHKYHCICPMRCAEDPDRLYKYATKLKKNCKEITDKELDKKMKE 118 Query 121 LKSVLESPDAETGTICFHNDVICRTTAEVSVMQNVY-INAPSTIYHQALKGVRKLYWIGF 179 L +V+ PD ET T+C H+D CR +V+V Q+VY ++ P+++YHQA KGVR YWIGF Sbjct 119 LAAVMSDPDLETETMCLHDDESCRYEGQVAVYQDVYAVDGPTSLYHQANKGVRVAYWIGF 178 Query 180 DTTQFMFSSMAGSYPSYNTNWADERVLEARNIGLCSTKLREGTMGKLSTFRKKALKPGTN 239 DTT FMF ++AG+YPSY+TNWADE VL ARNIGLCS+ + E + +S RKK LKP N Sbjct 179 DTTPFMFKNLAGAYPSYSTNWADETVLTARNIGLCSSDVMERSRRGMSILRKKYLKPSNN 238 Query 240 VYFSVGSTLYPENRADLQSWHLPSVFHLKGKQSFTCRCDTAVNCEGYVVKKITISPGITG 299 V FSVGST+Y E R L+SWHLPSVFHL+GKQ++TCRC+T V+C+GYVVK+I ISPG+ G Sbjct 239 VLFSVGSTIYHEKRDLLRSWHLPSVFHLRGKQNYTCRCETIVSCDGYVVKRIAISPGLYG 298 Query 300 RVNRYTVTNNSEGFLLCKITDTVKGERVSFPVCTYIPPSICDQMTGILATDIQPEDAQKL 359 + + Y T + EGFL CK+TDT+ GERVSFPVCTY+P ++CDQMTGILATD+ +DAQKL Sbjct 299 KPSGYAATMHREGFLCCKVTDTLNGERVSFPVCTYVPATLCDQMTGILATDVSADDAQKL 358 Query 360 LVGLNQRIVVNGKTNRNTNTMQNYLLPAVATGLSKWAKERKADCSDEKPLNVRERKLAFG 419 LVGLNQRIVVNG+T RNTNTM+NYLLP VA ++WAKE K D DE+PL +R+R+L G Sbjct 359 LVGLNQRIVVNGRTQRNTNTMKNYLLPVVAQAFARWAKEYKEDQEDERPLGLRDRQLVMG 418 Query 420 CLWAFKTKKIHSFYRPPGTQTIVKVAAEFSAFPMSSVWTTSL 461 C WAF+ KI S Y+ P TQTI+KV ++F +F + + + +L Sbjct 419 CCWAFRRHKITSIYKRPDTQTIIKVNSDFHSFVLPRIGSNTL 460 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Venezuelan equine encephalitis virus (strain Mena II)] Sequence ID: Q9WJC7.3 Length: 2499 Range 1: 1 to 462 Score:625 bits(1613), Expect:0.0, Method:Compositional matrix adjust., Identities:288/464(62%), Positives:361/464(77%), Gaps:3/464(0%) Query 1 MEKPTVHVDVDPQSPFVLQLQKSFPQFEIVAQQVTPNDHANARAFSHLASKLIEHEIPTS 60 MEK VHVD++ SPF+ LQ+SFPQFE+ A+QVT NDHANARAFSHLASKLIE E+ S Sbjct 1 MEK--VHVDIEEDSPFLRALQRSFPQFEVEAKQVTDNDHANARAFSHLASKLIETEVEPS 58 Query 61 VTILDIGSAPARRMYSEHKYHCVCPMRSPEDPDRLMNYASRLADKAGEITNKRLHDKLAD 120 TILDIGSAPARRMYS+HKYHC+CPM+ EDPDRL YA++L EIT+K L K+ + Sbjct 59 DTILDIGSAPARRMYSKHKYHCICPMKCAEDPDRLFKYAAKLKKNCKEITDKELDKKMKE 118 Query 121 LKSVLESPDAETGTICFHNDVICRTTAEVSVMQNVY-INAPSTIYHQALKGVRKLYWIGF 179 L V+ PD ET TIC H+D CR +V+V Q+VY ++ P+++YHQA KGVR YWIGF Sbjct 119 LAEVMNDPDLETETICLHDDETCRFEGQVAVYQDVYAVDGPTSLYHQANKGVRVAYWIGF 178 Query 180 DTTQFMFSSMAGSYPSYNTNWADERVLEARNIGLCSTKLREGTMGKLSTFRKKALKPGTN 239 DTT FMF ++AG+YPSY+TNWADE VL ARNIGLCS+ + E + +S RKK LKP N Sbjct 179 DTTPFMFKNLAGAYPSYSTNWADETVLTARNIGLCSSDVMERSRRGMSILRKKFLKPSNN 238 Query 240 VYFSVGSTLYPENRADLQSWHLPSVFHLKGKQSFTCRCDTAVNCEGYVVKKITISPGITG 299 V FSVGST+Y E R L+SWHLPSVFHL+GKQ++TCRC+T V+C+GYVVK+I ISPG+ G Sbjct 239 VLFSVGSTIYHEKRDLLRSWHLPSVFHLRGKQNYTCRCETIVSCDGYVVKRIAISPGLYG 298 Query 300 RVNRYTVTNNSEGFLLCKITDTVKGERVSFPVCTYIPPSICDQMTGILATDIQPEDAQKL 359 + + Y T + EGFL CK+TDT+ GERVSFPVCTY+P ++CDQMTGILATD+ +DAQKL Sbjct 299 KPSGYAATMHREGFLCCKVTDTLNGERVSFPVCTYVPATLCDQMTGILATDVSADDAQKL 358 Query 360 LVGLNQRIVVNGKTNRNTNTMQNYLLPAVATGLSKWAKERKADCSDEKPLNVRERKLAFG 419 LVGLNQRIVVNG+T RNTNTM+NYLLP VA ++WAKE K D DE+PL +R+R+L G Sbjct 359 LVGLNQRIVVNGRTQRNTNTMKNYLLPVVAQAFARWAKEYKEDQEDERPLGLRDRQLVMG 418 Query 420 CLWAFKTKKIHSFYRPPGTQTIVKVAAEFSAFPMSSVWTTSLPM 463 C WAF+ KI S Y+ P TQTI+KV ++F +F + + +++L + Sbjct 419 CCWAFRKHKITSVYKRPDTQTIIKVNSDFHSFVLPRIGSSTLEI 462 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Venezuelan equine encephalitis virus (strain P676)] Sequence ID: P36328.2 Length: 2493 Range 1: 1 to 460 Score:625 bits(1613), Expect:0.0, Method:Compositional matrix adjust., Identities:288/462(62%), Positives:360/462(77%), Gaps:3/462(0%) Query 1 MEKPTVHVDVDPQSPFVLQLQKSFPQFEIVAQQVTPNDHANARAFSHLASKLIEHEIPTS 60 MEK VHVD++ SPF+ LQ+SFPQFE+ A+QVT NDHANARAFSHLASKLIE E+ S Sbjct 1 MEK--VHVDIEEDSPFLRALQRSFPQFEVEAKQVTDNDHANARAFSHLASKLIETEVDPS 58 Query 61 VTILDIGSAPARRMYSEHKYHCVCPMRSPEDPDRLMNYASRLADKAGEITNKRLHDKLAD 120 TILDIGSAPARRMYS+HKYHC+CPMR EDPDRL YA++L EIT+K L K+ + Sbjct 59 DTILDIGSAPARRMYSKHKYHCICPMRCAEDPDRLYKYATKLKKNCKEITDKELDKKMKE 118 Query 121 LKSVLESPDAETGTICFHNDVICRTTAEVSVMQNVY-INAPSTIYHQALKGVRKLYWIGF 179 L +V+ PD ET T+C H+D CR +V+V Q+VY ++ P+++YHQA KGVR YWIGF Sbjct 119 LAAVMSDPDLETETMCLHDDESCRYEGQVAVYQDVYAVDGPTSLYHQANKGVRVAYWIGF 178 Query 180 DTTQFMFSSMAGSYPSYNTNWADERVLEARNIGLCSTKLREGTMGKLSTFRKKALKPGTN 239 DTT FMF ++AG+YPSY+TNWADE VL ARNIGLCS+ + E + +S RKK LKP N Sbjct 179 DTTPFMFKNLAGAYPSYSTNWADETVLTARNIGLCSSDVMERSRRGMSILRKKYLKPSNN 238 Query 240 VYFSVGSTLYPENRADLQSWHLPSVFHLKGKQSFTCRCDTAVNCEGYVVKKITISPGITG 299 V FSVGST+Y E R L+SWHLPSVFHL+GKQ++TCRC+T V+C+GYVVK+I ISPG+ G Sbjct 239 VLFSVGSTIYHEKRDLLRSWHLPSVFHLRGKQNYTCRCETIVSCDGYVVKRIAISPGLYG 298 Query 300 RVNRYTVTNNSEGFLLCKITDTVKGERVSFPVCTYIPPSICDQMTGILATDIQPEDAQKL 359 + + Y T + EGFL CK+TDT+ GERVSFPVCTY+P ++CDQMTGILATD+ +DAQKL Sbjct 299 KPSGYAATMHREGFLCCKVTDTLNGERVSFPVCTYVPATLCDQMTGILATDVSADDAQKL 358 Query 360 LVGLNQRIVVNGKTNRNTNTMQNYLLPAVATGLSKWAKERKADCSDEKPLNVRERKLAFG 419 LVGLNQRIVVNG+T RNTNTM+NYLLP VA ++WAKE K D DE+PL +R+R+L G Sbjct 359 LVGLNQRIVVNGRTQRNTNTMKNYLLPVVAQAFARWAKEYKEDQEDERPLGLRDRQLVMG 418 Query 420 CLWAFKTKKIHSFYRPPGTQTIVKVAAEFSAFPMSSVWTTSL 461 C WAF+ KI S Y+ P TQTI+KV ++F +F + + + +L Sbjct 419 CCWAFRRHKITSIYKRPDTQTIIKVNSDFHSFVLPRIGSNTL 460 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Venezuelan equine encephalitis virus (strain 3880)] Sequence ID: P36327.3 Length: 2485 Range 1: 1 to 462 Score:625 bits(1613), Expect:0.0, Method:Compositional matrix adjust., Identities:288/464(62%), Positives:361/464(77%), Gaps:3/464(0%) Query 1 MEKPTVHVDVDPQSPFVLQLQKSFPQFEIVAQQVTPNDHANARAFSHLASKLIEHEIPTS 60 MEK VHVD++ SPF+ LQ+SFPQFE+ A+QVT NDHANARAFSHLASKLIE E+ S Sbjct 1 MEK--VHVDIEEDSPFLRALQRSFPQFEVEAKQVTDNDHANARAFSHLASKLIETEVDPS 58 Query 61 VTILDIGSAPARRMYSEHKYHCVCPMRSPEDPDRLMNYASRLADKAGEITNKRLHDKLAD 120 TILDIGSAPARRMYS+HKYHC+CPMR EDPDRL YA++L EIT+K L K+ + Sbjct 59 DTILDIGSAPARRMYSKHKYHCICPMRCAEDPDRLYKYATKLKKNCKEITDKELDKKMKE 118 Query 121 LKSVLESPDAETGTICFHNDVICRTTAEVSVMQNVY-INAPSTIYHQALKGVRKLYWIGF 179 L +V+ PD ET T+C H+D CR +V+V Q+VY ++ P+++YHQA KGVR YWIGF Sbjct 119 LAAVMSDPDLETETMCLHDDESCRYEGQVAVYQDVYAVDGPTSLYHQANKGVRVAYWIGF 178 Query 180 DTTQFMFSSMAGSYPSYNTNWADERVLEARNIGLCSTKLREGTMGKLSTFRKKALKPGTN 239 DTT FMF ++AG+YPSY+TNWADE VL ARNIGLCS+ + E + +S RKK LKP N Sbjct 179 DTTPFMFKNLAGAYPSYSTNWADETVLTARNIGLCSSDVMERSRRGMSILRKKYLKPSNN 238 Query 240 VYFSVGSTLYPENRADLQSWHLPSVFHLKGKQSFTCRCDTAVNCEGYVVKKITISPGITG 299 V FSVGST+Y E R L+SWHLPSVFHL+GKQ++TCRC+T V+C+GYVVK+I ISPG+ G Sbjct 239 VLFSVGSTIYHEKRDLLRSWHLPSVFHLRGKQNYTCRCETIVSCDGYVVKRIAISPGLYG 298 Query 300 RVNRYTVTNNSEGFLLCKITDTVKGERVSFPVCTYIPPSICDQMTGILATDIQPEDAQKL 359 + + Y T + EGFL CK+TDT+ GERVSFPVCTY+P ++CDQMTGILATD+ +DAQKL Sbjct 299 KPSGYAATMHREGFLCCKVTDTLNGERVSFPVCTYVPATLCDQMTGILATDVSADDAQKL 358 Query 360 LVGLNQRIVVNGKTNRNTNTMQNYLLPAVATGLSKWAKERKADCSDEKPLNVRERKLAFG 419 LVGLNQRIVVNG+T RNTNTM+NYLLP VA ++WAKE K D DE+PL +R+R+L G Sbjct 359 LVGLNQRIVVNGRTQRNTNTMKNYLLPVVAQAFARWAKEYKEDQEDERPLGLRDRQLVMG 418 Query 420 CLWAFKTKKIHSFYRPPGTQTIVKVAAEFSAFPMSSVWTTSLPM 463 C WAF+ KI S Y+ P TQTI+KV ++F +F + + + +L + Sbjct 419 CCWAFRRHKITSIYKRPDTQTIIKVNSDFHSFVLPRIGSNTLEI 462 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Venezuelan equine encephalitis virus] Sequence ID: Q8V294.3 Length: 2497 Range 1: 1 to 462 Score:624 bits(1609), Expect:0.0, Method:Compositional matrix adjust., Identities:287/464(62%), Positives:360/464(77%), Gaps:3/464(0%) Query 1 MEKPTVHVDVDPQSPFVLQLQKSFPQFEIVAQQVTPNDHANARAFSHLASKLIEHEIPTS 60 MEK VHVD++ SPF+ LQ+SFPQFE+ A+QVT NDHANARAFSHLASKLIE E+ S Sbjct 1 MEK--VHVDIEEDSPFLRALQRSFPQFEVEAKQVTDNDHANARAFSHLASKLIETEVEPS 58 Query 61 VTILDIGSAPARRMYSEHKYHCVCPMRSPEDPDRLMNYASRLADKAGEITNKRLHDKLAD 120 TILDIGSAPARRMYS+HKYHC+CPM+ EDPDRL YA++L +IT+K L K+ + Sbjct 59 DTILDIGSAPARRMYSKHKYHCICPMKCAEDPDRLFKYAAKLKKNCKDITDKELDKKMKE 118 Query 121 LKSVLESPDAETGTICFHNDVICRTTAEVSVMQNVY-INAPSTIYHQALKGVRKLYWIGF 179 L V+ PD ET TIC H+D CR +V+V Q+VY ++ P+++YHQA KGVR YWIGF Sbjct 119 LAEVMSDPDLETETICLHDDETCRFEGQVAVYQDVYAVDGPTSLYHQANKGVRVAYWIGF 178 Query 180 DTTQFMFSSMAGSYPSYNTNWADERVLEARNIGLCSTKLREGTMGKLSTFRKKALKPGTN 239 DTT FMF ++AG+YPSY+TNWADE VL ARNIGLCS+ + E + +S RKK LKP N Sbjct 179 DTTPFMFKNLAGAYPSYSTNWADETVLTARNIGLCSSDVMERSRRGMSILRKKFLKPSNN 238 Query 240 VYFSVGSTLYPENRADLQSWHLPSVFHLKGKQSFTCRCDTAVNCEGYVVKKITISPGITG 299 V FSVGST+Y E R L+SWHLPSVFHL+GKQ++TCRC+T V+C+GYVVK+I ISPG+ G Sbjct 239 VLFSVGSTIYHEKRDLLRSWHLPSVFHLRGKQNYTCRCETIVSCDGYVVKRIAISPGLYG 298 Query 300 RVNRYTVTNNSEGFLLCKITDTVKGERVSFPVCTYIPPSICDQMTGILATDIQPEDAQKL 359 + + Y T + EGFL CK+TDT+ GERVSFPVCTY+P ++CDQMTGILATD+ +DAQKL Sbjct 299 KPSGYAATMHREGFLCCKVTDTLDGERVSFPVCTYVPATLCDQMTGILATDVSADDAQKL 358 Query 360 LVGLNQRIVVNGKTNRNTNTMQNYLLPAVATGLSKWAKERKADCSDEKPLNVRERKLAFG 419 LVGLNQRIVVNG+T RNTNTM+NYLLP VA ++WAKE K D DE+PL +R+R+L G Sbjct 359 LVGLNQRIVVNGRTQRNTNTMKNYLLPVVAQAFARWAKEYKEDQEDERPLGLRDRQLVMG 418 Query 420 CLWAFKTKKIHSFYRPPGTQTIVKVAAEFSAFPMSSVWTTSLPM 463 C WAF+ KI S Y+ P TQTI+KV ++F +F + + + +L + Sbjct 419 CCWAFRKHKITSVYKRPDTQTIIKVNSDFHSFVLPRIGSNTLEI 462 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Western equine encephalitis virus] Sequence ID: P13896.3 Length: 2467 Range 1: 1 to 460 Score:622 bits(1604), Expect:0.0, Method:Compositional matrix adjust., Identities:293/464(63%), Positives:358/464(77%), Gaps:5/464(1%) Query 1 MEKPTVHVDVDPQSPFVLQLQKSFPQFEIVAQQVTPNDHANARAFSHLASKLIEHEIPTS 60 ME+ +HVD+D SP+V LQ++FPQFEI A+QVT NDHANARAFSH+A+KLIE E+ Sbjct 1 MER--IHVDLDADSPYVKSLQRTFPQFEIEARQVTDNDHANARAFSHVATKLIESEVDRD 58 Query 61 VTILDIGSAPARRMYSEHKYHCVCPMRSPEDPDRLMNYASRLADKAGEITNKRLHDKLAD 120 ILDIGSAP R +S H+YHC+CPM S EDPDRL YA RL K +IT+K + K AD Sbjct 59 QVILDIGSAPVRHAHSNHRYHCICPMISAEDPDRLQRYAERL--KKSDITDKNIASKAAD 116 Query 121 LKSVLESPDAETGTICFHNDVICRTTAEVSVMQNVY-INAPSTIYHQALKGVRKLYWIGF 179 L V+ +PDAET ++C H D CR V+V Q+VY ++AP++IYHQALKGVR +YWIGF Sbjct 117 LLEVMSTPDAETPSLCMHTDATCRYFGSVAVYQDVYAVHAPTSIYHQALKGVRTIYWIGF 176 Query 180 DTTQFMFSSMAGSYPSYNTNWADERVLEARNIGLCSTKLREGTMGKLSTFRKKALKPGTN 239 DTT FM+ +MAGSYP+YNTNWADERVLEARNIGL ++ L+E +GKLS RKK L+P Sbjct 177 DTTPFMYKNMAGSYPTYNTNWADERVLEARNIGLGNSDLQESRLGKLSILRKKRLQPTNK 236 Query 240 VYFSVGSTLYPENRADLQSWHLPSVFHLKGKQSFTCRCDTAVNCEGYVVKKITISPGITG 299 + FSVGST+Y E+R+ L+SWHLP+VFHLKGK +FT RC T V+CEGYV+KKITISPG+ G Sbjct 237 IIFSVGSTIYTEDRSLLRSWHLPNVFHLKGKSNFTGRCGTIVSCEGYVIKKITISPGLYG 296 Query 300 RVNRYTVTNNSEGFLLCKITDTVKGERVSFPVCTYIPPSICDQMTGILATDIQPEDAQKL 359 +V T + EGFL CK+TDT++GERVSF VCTY+P ++CDQMTGILATD+ +DAQKL Sbjct 297 KVENLASTMHREGFLSCKVTDTLRGERVSFAVCTYVPATLCDQMTGILATDVSVDDAQKL 356 Query 360 LVGLNQRIVVNGKTNRNTNTMQNYLLPAVATGLSKWAKERKADCSDEKPLNVRERKLAFG 419 LVGLNQRIVVNG+T RNTNTMQNYLLP VA S+WA+E +AD DEK L VRER L G Sbjct 357 LVGLNQRIVVNGRTQRNTNTMQNYLLPVVAQAFSRWAREHRADLDDEKELGVRERTLTMG 416 Query 420 CLWAFKTKKIHSFYRPPGTQTIVKVAAEFSAFPMSSVWTTSLPM 463 C WAFKT+KI S Y+ PGTQTI KV A F +F + + + L M Sbjct 417 CCWAFKTQKITSIYKKPGTQTIKKVPAVFDSFVIPRLTSHGLDM 460 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Eastern equine encephalitis virus (strain Florida 91-469)] Sequence ID: Q4QXJ8.3 Length: 2494 Range 1: 1 to 448 Score:620 bits(1598), Expect:0.0, Method:Compositional matrix adjust., Identities:294/452(65%), Positives:353/452(78%), Gaps:5/452(1%) Query 1 MEKPTVHVDVDPQSPFVLQLQKSFPQFEIVAQQVTPNDHANARAFSHLASKLIEHEIPTS 60 MEK VHVD+D SPFV LQ+ FP FEI A QVT NDHANARAFSHLA+KLIE E+ T Sbjct 1 MEK--VHVDLDADSPFVKSLQRCFPHFEIEATQVTDNDHANARAFSHLATKLIEGEVDTD 58 Query 61 VTILDIGSAPARRMYSEHKYHCVCPMRSPEDPDRLMNYASRLADKAGEITNKRLHDKLAD 120 ILDIGSAP R +S+HKYHC+CPM+S EDPDRL YA +L + ++T+K + K AD Sbjct 59 QVILDIGSAPVRHTHSKHKYHCICPMKSAEDPDRLYRYADKL--RKSDVTDKCIASKAAD 116 Query 121 LKSVLESPDAETGTICFHNDVICRTTAEVSVMQNVY-INAPSTIYHQALKGVRKLYWIGF 179 L +V+ +PDAET ++C H D CR V+V Q+VY ++AP++IY+QALKGVR +YWIGF Sbjct 117 LLTVMSTPDAETPSLCMHTDSTCRYHGSVAVYQDVYAVHAPTSIYYQALKGVRTIYWIGF 176 Query 180 DTTQFMFSSMAGSYPSYNTNWADERVLEARNIGLCSTKLREGTMGKLSTFRKKALKPGTN 239 DTT FM+ +MAG+YP+YNTNWADE VLEARNIGL S+ L E + GK+S RKK L+P Sbjct 177 DTTPFMYKNMAGAYPTYNTNWADESVLEARNIGLGSSDLHEKSFGKVSIMRKKKLQPTNK 236 Query 240 VYFSVGSTLYPENRADLQSWHLPSVFHLKGKQSFTCRCDTAVNCEGYVVKKITISPGITG 299 V FSVGST+Y E R L+SWHLP+VFHLKGK SFT RC+T V+CEGYVVKKIT+SPGI G Sbjct 237 VIFSVGSTIYTEERILLRSWHLPNVFHLKGKTSFTGRCNTIVSCEGYVVKKITLSPGIYG 296 Query 300 RVNRYTVTNNSEGFLLCKITDTVKGERVSFPVCTYIPPSICDQMTGILATDIQPEDAQKL 359 +V+ T + EGFL CK+TDT++GERVSFPVCTY+P ++CDQMTGILATD+ +DAQKL Sbjct 297 KVDNLASTMHREGFLSCKVTDTLRGERVSFPVCTYVPATLCDQMTGILATDVSVDDAQKL 356 Query 360 LVGLNQRIVVNGKTNRNTNTMQNYLLPAVATGLSKWAKERKADCSDEKPLNVRERKLAFG 419 LVGLNQRIVVNG+T RNTNTMQNYLLP VA S+WA+E +AD DEK L VRER L G Sbjct 357 LVGLNQRIVVNGRTQRNTNTMQNYLLPVVAQAFSRWAREHRADLEDEKGLGVRERSLVMG 416 Query 420 CLWAFKTKKIHSFYRPPGTQTIVKVAAEFSAF 451 C WAFKT KI S Y+ PGTQTI KV A F++F Sbjct 417 CCWAFKTHKITSIYKRPGTQTIKKVPAVFNSF 448 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Barmah Forest virus] Sequence ID: P87515.3 Length: 2411 Range 1: 1 to 461 Score:619 bits(1595), Expect:0.0, Method:Compositional matrix adjust., Identities:291/465(63%), Positives:356/465(76%), Gaps:5/465(1%) Query 1 MEKPTVHVDVDPQSPFVLQLQKSFPQFEIVAQQVTPNDHANARAFSHLASKLIEHEIPTS 60 M KP V +DV+P+S F Q+Q FPQFEI A Q TPNDHA+ARAFSHLA+KLIE E Sbjct 1 MAKPVVKIDVEPESHFAKQVQSCFPQFEIEAVQTTPNDHAHARAFSHLATKLIEMETAKD 60 Query 61 VTILDIGSAPARRMYSEHKYHCVCPMRSPEDPDRLMNYASRLADKAGEITNKRLHDKLAD 120 ILDIGSAPARR+YSEHKYHCVCPM+ EDP+R++ YA +L AG K +KL D Sbjct 61 QIILDIGSAPARRLYSEHKYHCVCPMKCTEDPERMLGYARKLI--AGSAKGKA--EKLRD 116 Query 121 LKSVLESPDAETGTICFHNDVICRTTAEVSVMQNVY-INAPSTIYHQALKGVRKLYWIGF 179 L+ VL +PD ET ++C H D CR +V+V Q+VY I+AP+T+YHQALKGVR YWIGF Sbjct 117 LRDVLATPDIETQSLCLHTDASCRYRGDVAVYQDVYAIDAPTTLYHQALKGVRTAYWIGF 176 Query 180 DTTQFMFSSMAGSYPSYNTNWADERVLEARNIGLCSTKLREGTMGKLSTFRKKALKPGTN 239 DTT FM+ ++AG+YP Y+TNWADE+VLE+RNIGLCS K+ EG S RKK LK Sbjct 177 DTTPFMYDALAGAYPLYSTNWADEQVLESRNIGLCSDKVSEGGKKGRSILRKKFLKQSDR 236 Query 240 VYFSVGSTLYPENRADLQSWHLPSVFHLKGKQSFTCRCDTAVNCEGYVVKKITISPGITG 299 V FSVGSTLY E+R LQSWHLPS FHLKGK SFTCRCDT V+CEGYV+KKIT+ PG+TG Sbjct 237 VMFSVGSTLYTESRKLLQSWHLPSTFHLKGKSSFTCRCDTIVSCEGYVLKKITMCPGVTG 296 Query 300 RVNRYTVTNNSEGFLLCKITDTVKGERVSFPVCTYIPPSICDQMTGILATDIQPEDAQKL 359 + Y VT++ EGF++ K+TDT++GERVSF VCTY+P ++CDQMTGILAT++ +DAQKL Sbjct 297 KPIGYAVTHHKEGFVVGKVTDTIRGERVSFAVCTYVPTTLCDQMTGILATEVTADDAQKL 356 Query 360 LVGLNQRIVVNGKTNRNTNTMQNYLLPAVATGLSKWAKERKADCSDEKPLNVRERKLAFG 419 LVGLNQRIVVNG+T RNTNTM+NYLLP VA L+KWAKE K D DE+PLN R+R L Sbjct 357 LVGLNQRIVVNGRTQRNTNTMKNYLLPLVAQALAKWAKEAKQDMEDERPLNERQRTLTCL 416 Query 420 CLWAFKTKKIHSFYRPPGTQTIVKVAAEFSAFPMSSVWTTSLPMS 464 C WAFK K H+ Y+ P TQ+IVKV EF++FP+ S+W+ + +S Sbjct 417 CCWAFKRNKRHAIYKRPDTQSIVKVPCEFTSFPLVSLWSAGMSIS 461 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Eastern equine encephalitis virus (strain PE-3.0815)] Sequence ID: Q306W8.3 Length: 2474 Range 1: 1 to 448 Score:619 bits(1595), Expect:0.0, Method:Compositional matrix adjust., Identities:293/452(65%), Positives:351/452(77%), Gaps:5/452(1%) Query 1 MEKPTVHVDVDPQSPFVLQLQKSFPQFEIVAQQVTPNDHANARAFSHLASKLIEHEIPTS 60 MEK VHVD+D SP+V LQK FP FEI A QVT NDHANARAFSHLA+KLIE E+ Sbjct 1 MEK--VHVDLDADSPYVKLLQKCFPHFEIEATQVTDNDHANARAFSHLATKLIESEVDPD 58 Query 61 VTILDIGSAPARRMYSEHKYHCVCPMRSPEDPDRLMNYASRLADKAGEITNKRLHDKLAD 120 ILDIGSAP R +S+HKYHC+CPM S EDPDRL YA +L + ++T++ + K AD Sbjct 59 QVILDIGSAPVRHTHSKHKYHCICPMISAEDPDRLQRYADKL--RKSDVTDRFIASKAAD 116 Query 121 LKSVLESPDAETGTICFHNDVICRTTAEVSVMQNVY-INAPSTIYHQALKGVRKLYWIGF 179 L +V+ +PD ET ++C H D CR V+V Q+VY ++AP++IYHQALKGVR +YWIGF Sbjct 117 LLTVMSTPDVETPSLCMHTDSTCRYHGTVAVYQDVYAVHAPTSIYHQALKGVRTIYWIGF 176 Query 180 DTTQFMFSSMAGSYPSYNTNWADERVLEARNIGLCSTKLREGTMGKLSTFRKKALKPGTN 239 DTT FM+ +MAG+YP+YNTNWADE VLEARNIGLCS+ L E +GK+S RKK L+P Sbjct 177 DTTPFMYKNMAGAYPTYNTNWADESVLEARNIGLCSSDLHEKRLGKISIMRKKKLQPTNK 236 Query 240 VYFSVGSTLYPENRADLQSWHLPSVFHLKGKQSFTCRCDTAVNCEGYVVKKITISPGITG 299 V FSVGST+Y E R L+SWHLP+VFHLKGK SFT RC+T V+C+GYVVKKITISPGI G Sbjct 237 VVFSVGSTIYTEERILLRSWHLPNVFHLKGKTSFTGRCNTIVSCDGYVVKKITISPGIYG 296 Query 300 RVNRYTVTNNSEGFLLCKITDTVKGERVSFPVCTYIPPSICDQMTGILATDIQPEDAQKL 359 +V+ T + EGFL CK+TDT++GERVSFPVCTY+P ++CDQMTGILATD+ +DAQKL Sbjct 297 KVDNLASTLHREGFLSCKVTDTLRGERVSFPVCTYVPATLCDQMTGILATDVSVDDAQKL 356 Query 360 LVGLNQRIVVNGKTNRNTNTMQNYLLPAVATGLSKWAKERKADCSDEKPLNVRERKLAFG 419 LVGLNQRIVVNG+T RNTNTMQNYLLP VA S+WA+E +AD DEK L VRER L G Sbjct 357 LVGLNQRIVVNGRTQRNTNTMQNYLLPVVAQAFSRWAREYRADLEDEKDLGVRERSLVMG 416 Query 420 CLWAFKTKKIHSFYRPPGTQTIVKVAAEFSAF 451 C WAFKT KI S Y+ PGTQTI KV A F++F Sbjct 417 CCWAFKTHKITSIYKKPGTQTIKKVPAVFNSF 448 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Eastern equine encephalitis virus (strain PE-0.0155)] Sequence ID: Q306W6.3 Length: 2471 Range 1: 1 to 448 Score:613 bits(1580), Expect:0.0, Method:Compositional matrix adjust., Identities:292/452(65%), Positives:347/452(76%), Gaps:5/452(1%) Query 1 MEKPTVHVDVDPQSPFVLQLQKSFPQFEIVAQQVTPNDHANARAFSHLASKLIEHEIPTS 60 MEK VHVD+D SP+V LQK FP FEI A QVT NDHANARAFSHLA+KLIE E+ Sbjct 1 MEK--VHVDLDADSPYVKSLQKCFPHFEIEATQVTDNDHANARAFSHLATKLIESEVDPD 58 Query 61 VTILDIGSAPARRMYSEHKYHCVCPMRSPEDPDRLMNYASRLADKAGEITNKRLHDKLAD 120 ILDIGSAP R +S+HKYHC+CPM S EDPDRL YA +L + ++T++ + K AD Sbjct 59 QVILDIGSAPVRHTHSKHKYHCICPMISAEDPDRLHRYADKL--RKSDVTDRFIASKAAD 116 Query 121 LKSVLESPDAETGTICFHNDVICRTTAEVSVMQNVY-INAPSTIYHQALKGVRKLYWIGF 179 L +V+ +PD ET ++C H D CR V+V Q+VY ++AP++IYHQALKGVR +YWIGF Sbjct 117 LLTVMSTPDVETPSLCMHTDSTCRYHGTVAVYQDVYAVHAPTSIYHQALKGVRTIYWIGF 176 Query 180 DTTQFMFSSMAGSYPSYNTNWADERVLEARNIGLCSTKLREGTMGKLSTFRKKALKPGTN 239 DTT FM+ +MAG+YP+YNTNWADE VLEARNIGLCS+ L E GK+S RKK L+P Sbjct 177 DTTPFMYKNMAGAYPTYNTNWADESVLEARNIGLCSSDLHEQRFGKISIMRKKKLQPTNK 236 Query 240 VYFSVGSTLYPENRADLQSWHLPSVFHLKGKQSFTCRCDTAVNCEGYVVKKITISPGITG 299 V FSVGST+Y E R L+SWHLP+VFHLKGK SFT RC+T V+CEGYVVKKITISPGI G Sbjct 237 VVFSVGSTIYTEERILLRSWHLPNVFHLKGKTSFTGRCNTIVSCEGYVVKKITISPGIYG 296 Query 300 RVNRYTVTNNSEGFLLCKITDTVKGERVSFPVCTYIPPSICDQMTGILATDIQPEDAQKL 359 +V+ T + EGFL CK+TDT++GERVSFPVCTY+P ++CDQMTGILATD+ +DAQKL Sbjct 297 KVDNLASTMHREGFLSCKVTDTLRGERVSFPVCTYVPATLCDQMTGILATDVSVDDAQKL 356 Query 360 LVGLNQRIVVNGKTNRNTNTMQNYLLPAVATGLSKWAKERKADCSDEKPLNVRERKLAFG 419 LVGLNQRIVVNG+T RNTNTM NYLLP VA S+WA+E AD DEK L VRER L G Sbjct 357 LVGLNQRIVVNGRTQRNTNTMPNYLLPIVAQAFSRWAREYHADLEDEKDLGVRERSLVMG 416 Query 420 CLWAFKTKKIHSFYRPPGTQTIVKVAAEFSAF 451 C WAFKT KI S Y+ PGTQT KV A F++F Sbjct 417 CCWAFKTHKITSIYKKPGTQTTKKVPAVFNSF 448 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Sleeping disease virus] Sequence ID: Q8QL53.1 Length: 2593 Range 1: 14 to 477 Score:405 bits(1042), Expect:7e-126, Method:Compositional matrix adjust., Identities:215/464(46%), Positives:291/464(62%), Gaps:9/464(1%) Query 5 TVHVDVDPQSPFVLQLQKSFPQFEIVAQQVTPNDHANARAFSHLASKLIEHEIP-TSVTI 63 TV VD+ P + Q + +FP FE+VA + NDHA ARAFSHLA+K IE +I V + Sbjct 14 TVTVDLPADHPALNQFKTAFPGFEVVASNRSSNDHAAARAFSHLATKWIERDIDGRQVIV 73 Query 64 LDIGSAPARRMYSEHK--YHCVCPMRSPEDPDRLMNYASRLADKAGEITNKRLHDKLADL 121 DIGSAPARR+ + YH VCP + EDP+RL +YA +L + + D++ DL Sbjct 74 ADIGSAPARRVGAPDNVTYHSVCPRKCAEDPERLASYARKLVRAVEKGDGHLVSDRITDL 133 Query 122 KSVLESPDA--ETGTICFHNDVICRTTAEVSVMQNVY-INAPSTIYHQALKGVRKLYWIG 178 K VLE+PD ET +IC ++DV C+ A+++V Q+VY ++APSTIY QA KG R +YWIG Sbjct 134 KDVLENPDTSLETTSICLNDDVSCKVKADIAVYQDVYAVDAPSTIYAQADKGTRVVYWIG 193 Query 179 FDTTQFMFSSMAGSYPSYNTNWADERVLEARNIGLCSTKLREGTMGKLSTFRKKALKPGT 238 F+ F +MAGS+P Y+ NW+D VL A+N+ LC + L E ++ FR K L P Sbjct 194 FEPFVFHTDAMAGSFPLYDANWSDSAVLAAKNLPLCYSGLSEDSIKWRFRFRDKPLVPSG 253 Query 239 NVYFSVGSTLYPENRADLQSWHLPSVFHLKGKQSFTCRCDTAVNCEGYVVKKITISPGIT 298 +++SVGST Y E+R L+SWHLPS FH +TCRCDT V+C GYVVKKITI GI Sbjct 254 EIHYSVGSTHYVEDRDKLKSWHLPSTFHFVAPNKYTCRCDTVVSCGGYVVKKITICEGIV 313 Query 299 GR-VNRYTVTN-NSEGFLLCKITDTVKGERVSFPVCTYIPPSICDQMTGILATDIQPEDA 356 GR N T+ + +G ++ K +DT+ E+VSFPV TYIP ICDQMT + A ++ D Sbjct 314 GRPANEELATSYHRDGVVVTKFSDTINHEQVSFPVVTYIPAVICDQMTAMTADPVKYPDV 373 Query 357 QKLLVGLNQRIVVNGKTNRNTNTMQNYLLPAVATGLSKWAKERKADCSDEKPLNVRERKL 416 KLLVGLNQRIVVNG T RN N+M N L+P A L WA E + D DE+ + Sbjct 374 VKLLVGLNQRIVVNGTTVRNVNSMDNSLIPVFARALCSWADEARRDMEDEQDMYGVTSVT 433 Query 417 AFGCLW-AFKTKKIHSFYRPPGTQTIVKVAAEFSAFPMSSVWTT 459 + C+ A+ ++ H+FYR P + + V A+F+ +S+ T Sbjct 434 TWICICRAYDKRQQHTFYRRPKQSSGIYVPAKFTGSLRASLSAT 477 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Salmon pancreas disease virus] Sequence ID: Q8JJX1.1 Length: 2601 Range 1: 14 to 468 Score:403 bits(1035), Expect:6e-125, Method:Compositional matrix adjust., Identities:211/455(46%), Positives:285/455(62%), Gaps:9/455(1%) Query 5 TVHVDVDPQSPFVLQLQKSFPQFEIVAQQVTPNDHANARAFSHLASKLIEHEIP-TSVTI 63 TV V++ P + Q + +FP FE+VA + NDHA ARAFSHLA+K IE +I V + Sbjct 14 TVTVNLPADHPALNQFKTAFPGFEVVASNRSSNDHAAARAFSHLATKWIERDIGGRQVIV 73 Query 64 LDIGSAPARRMYSEHK--YHCVCPMRSPEDPDRLMNYASRLADKAGEITNKRLHDKLADL 121 DIGSAPARR+ + YH VCP + EDP+RL +YA +L +++K+ DL Sbjct 74 ADIGSAPARRIGAPDNVTYHSVCPRKCAEDPERLASYARKLVRAVERGDGHLVNEKITDL 133 Query 122 KSVLESPDA--ETGTICFHNDVICRTTAEVSVMQNVY-INAPSTIYHQALKGVRKLYWIG 178 K VLE+PD ET +IC ++DV C+ A+++V Q+VY ++APSTIY QA KG R +YWIG Sbjct 134 KDVLENPDTSLETTSICLNDDVSCKVKADIAVYQDVYAVDAPSTIYAQADKGTRVVYWIG 193 Query 179 FDTTQFMFSSMAGSYPSYNTNWADERVLEARNIGLCSTKLREGTMGKLSTFRKKALKPGT 238 F+ F +MAGS+P Y+ NW+D VL A+N+ LC + L E ++ FR K L P Sbjct 194 FEPFVFHTDAMAGSFPLYDANWSDSAVLAAKNLPLCYSGLSEDSIKWRFRFRDKPLVPSG 253 Query 239 NVYFSVGSTLYPENRADLQSWHLPSVFHLKGKQSFTCRCDTAVNCEGYVVKKITISPGIT 298 +++SVGST Y E+R L+SWHLPS FH +TCRCDT V+C GYVVKKITI GI Sbjct 254 EIHYSVGSTHYVEDRDKLKSWHLPSTFHFVAPNKYTCRCDTVVSCGGYVVKKITICEGIV 313 Query 299 G--RVNRYTVTNNSEGFLLCKITDTVKGERVSFPVCTYIPPSICDQMTGILATDIQPEDA 356 G + + +G ++ K +DT+ E+VSFPV TYIP ICDQMT + A ++ DA Sbjct 314 GIPAKEELATSYHRDGVVVTKFSDTINHEQVSFPVVTYIPAVICDQMTAMTANPVKYSDA 373 Query 357 QKLLVGLNQRIVVNGKTNRNTNTMQNYLLPAVATGLSKWAKERKADCSDEKPLNVRERKL 416 KLLVGLNQRIVVNG T RN N+M N L+P A L WA E + D DE+ L Sbjct 374 VKLLVGLNQRIVVNGTTVRNVNSMDNSLIPVFARALCSWADEVRRDMEDEQDLYGITSVT 433 Query 417 AFGCL-WAFKTKKIHSFYRPPGTQTIVKVAAEFSA 450 + C+ A+ ++ H+FYR P + + V A+F+ Sbjct 434 TWICICRAYDKRQQHTFYRRPKQSSGIYVPAKFTG 468