Описание пространственной структуры DXR_ECOLI по данным банка PDB, код 1jvs

1. название белка - 1-DEOXY-D-XYLULOSE 5-PHOSPHATE REDUCTOISOMERASE

2. код PDB файла - 1JVS

3. метод определения структуры: РСА, разрешение 2.20 A

4. диаметр цепи А - 62.5 A, 62.5*10-10 м, 31.25*10-4 длины бактерии E.COLI

select within (4.5, ndp2001) and *a
cpk 100
select within (3.5, Ndp2001) and *a
cpk 200
bond 75 6100 +
select atomno=75, atomno=6100
wireframe 30
bond 71 6083 +
select atomno=71, atomno=6083
wireframe 30
bond 64 6083 +
select atomno=64, atomno=6083
wireframe 30
bond 271 6121 +
select atomno=271, atomno=6121
wireframe 30
bond 262 6121 +
select atomno=262, atomno=6121
wireframe 30
bond 258 6121 +
select atomno=258, atomno=6121
wireframe 30
bond 262 6122 +
select atomno=262, atomno=6122
wireframe 30
select phe298:a.ca
label off
zoom 300
select 7a,9a,10a,11a,12a,34a,35a,36a,37a,56a,99a,101a,104a,122a
wireframe 100
select 8a,33a,100a,102a,123a,124a,125a,149a,275a
wireframe 50
select ndp
color gold
select mse
cpk off
wireframe off
backbone off
pause

echo These are atoms that influence on binding NDP and protein
select ile12 and not (*.ca, *.c, *.n, *.o)
color cyan
select ile12:a.ca
label ILE12
select ile100 and not (*.ca, *.c, *.n, *.o)
color cyan
select ile100:a.cd1
label ILE100
rotate x - 310
rotate y - 330
pause

echo This is SER11 that probably doesn't affect on the possibility of binding NDP and protein
select atomno=75
color green
label SER11