BLASTN 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= U00096 U00096 Escherichia coli str. K-12 substr. MG1655, complete genome. (1215 letters) Database: all 884 sequences; 12,243,887 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value AE008815 AE006468 |AE008815| Salmonella typhimurium LT2, section... 1378 0.0 embl|AE006068|AE006068 Pasteurella multocida subsp. multocida st... 74 9e-13 >AE008815 AE006468 |AE008815| Salmonella typhimurium LT2, section 119 of 220 of the complete genome. Length = 19982 Score = 1378 bits (695), Expect = 0.0 Identities = 1085/1215 (89%) Strand = Plus / Minus Query: 1 atgaaattaccgatttatctcgactactccgcaaccacgccggtggacccgcgtgttgcc 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 17399 atgaaattaccgatttatctcgactactccgcaaccacgccggtggacccgcgtgttgcc 17340 Query: 61 gagaaaatgatgcagtttatgacgatggacggaacctttggtaacccggcctcccgttct 120 |||||||||||||||||| |||| |||||||||||||||| |||||||| || ||||| Sbjct: 17339 gagaaaatgatgcagtttctgaccctggacggaacctttgggaacccggcgtctcgttca 17280 Query: 121 caccgtttcggctggcaggctgaagaagcggtagatatcgcccgtaatcagattgccgat 180 ||||||||||||||||||||||||||||| || ||||||||||| || |||||||| || Sbjct: 17279 caccgtttcggctggcaggctgaagaagccgtcgatatcgcccgcaaccagattgctgaa 17220 Query: 181 ctggtcggcgctgatccgcgtgaaatcgtctttacctctggtgcaaccgaatctgacaac 240 ||||||||||| || ||||||||||||||||||||||| || || || || ||||| ||| Sbjct: 17219 ctggtcggcgccgacccgcgtgaaatcgtctttacctcaggggcgacggagtctgataac 17160 Query: 241 ctggcgatcaaaggtgcagccaacttttatcagaaaaaaggcaagcacatcatcaccagc 300 |||||||| ||||| || |||||||||||||||||||||||||||||||||||||||||| Sbjct: 17159 ctggcgattaaaggcgctgccaacttttatcagaaaaaaggcaagcacatcatcaccagc 17100 Query: 301 aaaaccgaacacaaagcggtactggatacctgccgtcagctggagcgcgaaggttttgaa 360 || ||||| ||||||||||| ||||| |||||||||||||| ||||||||||| |||||| Sbjct: 17099 aagaccgagcacaaagcggtgctggacacctgccgtcagcttgagcgcgaagggtttgaa 17040 Query: 361 gtcacctacctggcaccgcagcgtaacggcattatcgacctgaaagaacttgaagcagcg 420 || ||||||||||| |||||||| |||||||| ||||| || || || || ||||||||| Sbjct: 17039 gtgacctacctggcgccgcagcgcaacggcatcatcgatctcaacgagctcgaagcagcg 16980 Query: 421 atgcgtgacgacaccatcctcgtgtccatcatgcacgtaaataacgaaatcggcgtggtg 480 ||||||||||||||||| || || |||||||||||||| || |||||||||||||||||| Sbjct: 16979 atgcgtgacgacaccattctggtttccatcatgcacgtgaacaacgaaatcggcgtggtg 16920 Query: 481 caggatatcgcggctatcggcgaaatgtgccgtgctcgtggcattatctatcacgttgat 540 |||||||||||| | ||||||||||||||||| || || || || ||||| ||||||||| Sbjct: 16919 caggatatcgcgaccatcggcgaaatgtgccgcgcgcgcggtatcatctaccacgttgat 16860 Query: 541 gcaacccagagcgtgggtaaactgcctatcgacctgagccagttgaaagttgacctgatg 600 || |||||||||||||| |||||||||||||| |||||||| ||||||| || |||||| Sbjct: 16859 gccacccagagcgtgggcaaactgcctatcgatctgagccaactgaaagtggatctgatg 16800 Query: 601 tctttctccggtcacaaaatctatggcccgaaaggtatcggtgcgctgtatgtacgtcgt 660 || ||||||||||| ||||| ||||| |||||||| || || ||||||||||| |||||| Sbjct: 16799 tccttctccggtcataaaatttatggtccgaaaggcattggcgcgctgtatgtgcgtcgt 16740 Query: 661 aaaccgcgcgtacgcatcgaagcgcaaatgcacggcggcggtcacgagcgcggtatgcgt 720 || ||||| | ||||| |||||||| ||||| |||||||| ||||| ||||||||||| Sbjct: 16739 aagccgcgtattcgcattgaagcgcagatgcatggcggcgggcacgaacgcggtatgcgc 16680 Query: 721 tccggcactctgcctgttcaccagatcgtcggaatgggcgaggcctatcgcatcgcaaaa 780 || || ||||||||||| |||||||| ||||| |||||||| || || || ||||| ||| Sbjct: 16679 tctggtactctgcctgtccaccagattgtcggcatgggcgaagcttaccgtatcgcgaaa 16620 Query: 781 gaagagatggcgaccgagatggaacgtctgcgcggcctgcgtaaccgtctgtggaacggc 840 |||||||||| |||||| |||| ||||||||||| |||||||||||||||||||||||| Sbjct: 16619 gaagagatggagaccgaaatggcccgtctgcgcggtctgcgtaaccgtctgtggaacggc 16560 Query: 841 atcaaagatatcgaagaagtttacctgaacggtgacctggaacacggtgcgccgaacatt 900 ||||||||||| |||||||||||||||||||| ||||| || || || ||||| |||||| Sbjct: 16559 atcaaagatattgaagaagtttacctgaacggcgaccttgagcagggcgcgccaaacatt 16500 Query: 901 ctcaacgtcagcttcaactacgttgaaggtgagtcgctgattatggcgctgaaagacctc 960 |||||||| ||||| |||||||||||||| ||||||||||| ||||||||||||||||| Sbjct: 16499 ctcaacgtgagctttaactacgttgaaggcgagtcgctgatcatggcgctgaaagacctg 16440 Query: 961 gcagtttcttcaggttccgcctgtacgtcagcaagcctcgaaccgtcctacgtgctgcgc 1020 || || ||||| ||||||||||| || || || || || |||||||||||||||||||| Sbjct: 16439 gcggtctcttccggttccgcctgcacctccgccagtctggaaccgtcctacgtgctgcgt 16380 Query: 1021 gcgctggggctgaacgacgagctggcacatagctctatccgtttctctttaggtcgtttt 1080 ||| |||| |||| ||||| ||||| ||||||||||||||||||||||||||||||||| Sbjct: 16379 gcgttgggcatgaatgacgaactggcgcatagctctatccgtttctctttaggtcgtttt 16320 Query: 1081 actactgaagaagagatcgactacaccatcgagttagttcgtaaatccatcggtcgtctg 1140 || |||||||||||||||||||||||||| || | |||||||||||||| || |||||| Sbjct: 16319 accactgaagaagagatcgactacaccattgatctggttcgtaaatccattggccgtctg 16260 Query: 1141 cgtgacctttctccgctgtgggaaatgtacaagcagggcgtggatctgaacagcatcgaa 1200 |||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||| Sbjct: 16259 cgtgacctttctccactgtgggaaatgtacaagcagggtgtggatctgaacagcatcgaa 16200 Query: 1201 tgggctcatcattaa 1215 ||||| ||||||||| Sbjct: 16199 tgggcacatcattaa 16185 >embl|AE006068|AE006068 Pasteurella multocida subsp. multocida str. Pm70 section 35 of 204 of the complete genome. Length = 11223 Score = 73.8 bits (37), Expect = 9e-13 Identities = 214/273 (78%) Strand = Plus / Plus Query: 96 ctttggtaacccggcctcccgttctcaccgtttcggctggcaggctgaagaagcggtaga 155 |||||||||||| ||||||||||| || || ||||||||||| |||||||| || || Sbjct: 677 ctttggtaacccagcctcccgttcacataaatttggctggcaggcagaagaagctgttga 736 Query: 156 tatcgcccgtaatcagattgccgatctggtcggcgctgatccgcgtgaaatcgtctttac 215 | | || ||||| | ||||| ||| || |||| || ||| | ||||| ||||| ||||| Sbjct: 737 tgtggcacgtaactatattgcggatttgatcggggcagattcacgtgagatcgtgtttac 796 Query: 216 ctctggtgcaaccgaatctgacaacctggcgatcaaaggtgcagccaacttttatcagaa 275 ||||||||||||||||| ||||| | || || ||||| || || |||||||||| | Sbjct: 797 gtctggtgcaaccgaatcagacaatttagccattaaaggggctgcgcacttttatcaaag 856 Query: 276 aaaaggcaagcacatcatcaccagcaaaaccgaacacaaagcggtactggatacctgccg 335 ||||| || || || || ||| | ||||| || || ||||| ||| | ||||| || || Sbjct: 857 caaaggtaaacatattattacctgtaaaactgagcataaagctgtattagatacttgtcg 916 Query: 336 tcagctggagcgcgaaggttttgaagtcaccta 368 |||||| ||||| ||||| || ||||| ||||| Sbjct: 917 tcagcttgagcgtgaaggcttcgaagtgaccta 949 Database: all Posted date: Oct 27, 2008 9:57 PM Number of letters in database: 12,243,887 Number of sequences in database: 884 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Sequences: 884 Number of Hits to DB: 177,202 Number of extensions: 10838 Number of successful extensions: 101 Number of sequences better than 1.0e-03: 2 Number of HSP's gapped: 100 Number of HSP's successfully gapped: 2 Length of query: 1215 Length of database: 12,243,887 Length adjustment: 17 Effective length of query: 1198 Effective length of database: 12,228,859 Effective search space: 14650173082 Effective search space used: 14650173082 X1: 11 (21.8 bits) X2: 15 (29.7 bits) X3: 25 (49.6 bits) S1: 15 (30.2 bits) S2: 22 (44.1 bits)