TBLASTN 2.2.15 [Oct-15-2006]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= uniprot|P0A6B7|ISCS_ECOLI Cysteine desulfurase;
(404 letters)
Database: all
884 sequences; 12,243,887 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AE008815 AE006468 |AE008815| Salmonella typhimurium LT2, section... 757 0.0
embl|AE006068|AE006068 Pasteurella multocida subsp. multocida st... 659 0.0
embl|AE006126|AE006126 Pasteurella multocida subsp. multocida st... 101 4e-22
AE008760 AE006468 |AE008760| Salmonella typhimurium LT2, section... 97 8e-21
AE012389 AE008922 |AE012389| Xanthomonas campestris pv. campestr... 88 4e-18
AE008836 AE006468 |AE008836| Salmonella typhimurium LT2, section... 87 7e-18
AE012136 AE008922 |AE012136| Xanthomonas campestris pv. campestr... 67 1e-11
AE012220 AE008922 |AE012220| Xanthomonas campestris pv. campestr... 53 2e-07
AE012112 AE008922 |AE012112| Xanthomonas campestris pv. campestr... 49 3e-06
AE008715 AE006468 |AE008715| Salmonella typhimurium LT2, section... 45 4e-05
AE012124 AE008922 |AE012124| Xanthomonas campestris pv. campestr... 45 5e-05
>AE008815 AE006468 |AE008815| Salmonella typhimurium LT2, section 119 of
220 of the complete genome.
Length = 19982
Score = 757 bits (1954), Expect = 0.0
Identities = 381/404 (94%), Positives = 387/404 (95%)
Frame = -1
Query: 1 MKLPIYLDYSATTPVDPRVAEKMMQFMTMDGTFGNPASRSHRFGWQAEEAVDIARNQIAD 60
MKLPIYLDYSATTPVDPRVAEKMMQF+T+DGTFGNPASRSHRFGWQAEEAVDIARNQIA+
Sbjct: 17399 MKLPIYLDYSATTPVDPRVAEKMMQFLTLDGTFGNPASRSHRFGWQAEEAVDIARNQIAE 17220
Query: 61 LVGADPREIVFTSGATESDNLAIKGAANFYQKKGKHIITSKTEHKAVLDTCRQLEREGFE 120
LVGADPREIVFTSGATESDNLAIKGAANFYQKKGKHIITSKTEHKAVLDTCRQLEREGFE
Sbjct: 17219 LVGADPREIVFTSGATESDNLAIKGAANFYQKKGKHIITSKTEHKAVLDTCRQLEREGFE 17040
Query: 121 VTYLAPQRNGIIDLKELEAAMRDDTILVSIMHVNNEIGVVQDIAAIGEMCRARGIIYHVD 180
VTYLAPQRNGIIDL ELEAAMRDDTILVSIMHVNNEIGVVQDIA IGEMCRARGIIYHVD
Sbjct: 17039 VTYLAPQRNGIIDLNELEAAMRDDTILVSIMHVNNEIGVVQDIATIGEMCRARGIIYHVD 16860
Query: 181 ATQSVGKLPIDLSQLKVDLMSFSGHKIYGPKGIGALYVRRKPRVRIEAQMHGGGHERGMR 240
ATQSVGKLPIDLSQLKVDLMSFSGHKIYGPKGIGALYVRRKPR+RIEAQMHGGGHERGMR
Sbjct: 16859 ATQSVGKLPIDLSQLKVDLMSFSGHKIYGPKGIGALYVRRKPRIRIEAQMHGGGHERGMR 16680
Query: 241 SGTLPVHQIVGMGEAYRIAKEEMATEMEXXXXXXXXXXXXIKDIEEVYLNGDLEHGAPNI 300
SGTLPVHQIVGMGEAYRIAKEEM TEM IKDIEEVYLNGDLE GAPNI
Sbjct: 16679 SGTLPVHQIVGMGEAYRIAKEEMETEMARLRGLRNRLWNGIKDIEEVYLNGDLEQGAPNI 16500
Query: 301 LNVSFNYVEGESLIMALKDLAVSSGSACTSASLEPSYVLRALGLNDELAHSSIRFSLGRF 360
LNVSFNYVEGESLIMALKDLAVSSGSACTSASLEPSYVLRALG+NDELAHSSIRFSLGRF
Sbjct: 16499 LNVSFNYVEGESLIMALKDLAVSSGSACTSASLEPSYVLRALGMNDELAHSSIRFSLGRF 16320
Query: 361 TTEEEIDYTIELVRKSIGRLRDLSPLWEMYKQGVDLNSIEWAHH 404
TTEEEIDYTI+LVRKSIGRLRDLSPLWEMYKQGVDLNSIEWAHH
Sbjct: 16319 TTEEEIDYTIDLVRKSIGRLRDLSPLWEMYKQGVDLNSIEWAHH 16188
>embl|AE006068|AE006068 Pasteurella multocida subsp. multocida str.
Pm70 section 35 of 204 of the complete genome.
Length = 11223
Score = 659 bits (1699), Expect = 0.0
Identities = 319/404 (78%), Positives = 366/404 (90%)
Frame = +3
Query: 1 MKLPIYLDYSATTPVDPRVAEKMMQFMTMDGTFGNPASRSHRFGWQAEEAVDIARNQIAD 60
MKLPIYLDY+AT PVD RVA+KMM+++T++G FGNPASRSH+FGWQAEEAVD+ARN IAD
Sbjct: 582 MKLPIYLDYAATCPVDERVAKKMMEYLTVEGNFGNPASRSHKFGWQAEEAVDVARNYIAD 761
Query: 61 LVGADPREIVFTSGATESDNLAIKGAANFYQKKGKHIITSKTEHKAVLDTCRQLEREGFE 120
L+GAD REIVFTSGATESDNLAIKGAA+FYQ KGKHIIT KTEHKAVLDTCRQLEREGFE
Sbjct: 762 LIGADSREIVFTSGATESDNLAIKGAAHFYQSKGKHIITCKTEHKAVLDTCRQLEREGFE 941
Query: 121 VTYLAPQRNGIIDLKELEAAMRDDTILVSIMHVNNEIGVVQDIAAIGEMCRARGIIYHVD 180
VTYL P+ +G+IDL+EL+ AMRDDTILVSIMHVNNEIGV+QDIAAIGE+CRAR I++HVD
Sbjct: 942 VTYLNPKSDGLIDLEELKNAMRDDTILVSIMHVNNEIGVIQDIAAIGELCRARKILFHVD 1121
Query: 181 ATQSVGKLPIDLSQLKVDLMSFSGHKIYGPKGIGALYVRRKPRVRIEAQMHGGGHERGMR 240
ATQSVGKLPI+L++LKVDLMS S HK+YGPKGIGALYV RKPRVR+EA +HGGGHERGMR
Sbjct: 1122ATQSVGKLPINLAELKVDLMSMSSHKLYGPKGIGALYVSRKPRVRLEAIIHGGGHERGMR 1301
Query: 241 SGTLPVHQIVGMGEAYRIAKEEMATEMEXXXXXXXXXXXXIKDIEEVYLNGDLEHGAPNI 300
SGTLPVHQIVGMGEAYRI KEEMA+EM +KDIEE Y+NG +EH +
Sbjct: 1302SGTLPVHQIVGMGEAYRICKEEMASEMPRLKALRDRLYNGLKDIEETYVNGSMEHRLDSN 1481
Query: 301 LNVSFNYVEGESLIMALKDLAVSSGSACTSASLEPSYVLRALGLNDELAHSSIRFSLGRF 360
LN+SFNYVEGESL+MAL+D+AVSSGSACTSASLEPSYVLRALGLNDELAHSSIRF+LGR+
Sbjct: 1482LNISFNYVEGESLMMALRDIAVSSGSACTSASLEPSYVLRALGLNDELAHSSIRFTLGRY 1661
Query: 361 TTEEEIDYTIELVRKSIGRLRDLSPLWEMYKQGVDLNSIEWAHH 404
TTEEEIDYTIELV+ ++ +LR+LSPLW+M+K+G+DLN+IEW HH
Sbjct: 1662TTEEEIDYTIELVKNAVAKLRELSPLWDMFKEGIDLNTIEWTHH 1793
>embl|AE006126|AE006126 Pasteurella multocida subsp. multocida str. Pm70
section 93 of 204 of the complete genome.
Length = 12635
Score = 101 bits (251), Expect = 4e-22
Identities = 71/236 (30%), Positives = 123/236 (52%), Gaps = 7/236 (2%)
Frame = +3
Query: 5 IYLDYSATTPVDPRVAEKMMQFMTMDGT--FGNPASRSHRFGWQAEEAV--DIARNQIAD 60
+YLD SA T + P+V D T F A HR + ++ + AR + +
Sbjct: 10881 VYLD-SAATALKPQVLT--------DATIAFYQSAGSVHRSQYDEKQTALFEQARENVKN 11033
Query: 61 LVGADPRE-IVFTSGATESDNLAIKGAANFYQKKGKHIITSKTEHKAVLDTCRQLEREGF 119
+GA+ E I++TSG T + N +G ++ K + II S+ +H A T ++ R+
Sbjct: 11034 FIGAESEETIIWTSGTTHAINCVARGLSHQLHPKAE-IIISEADHHANFVTWSEIARQYG 11210
Query: 120 EVTYLAP-QRNGIIDLKELEAAMRDDTILVSIMHVNNEIGVVQDIAAIGEMCRARG-IIY 177
++ P +I+ ++L A + +T+LV++ V+N G Q +A + ++ R +
Sbjct: 11211 ATLHILPINEQWLIEEQDLIAVLNTNTVLVALNMVSNVTGTEQPVANLIKLIRQHSHALV 11390
Query: 178 HVDATQSVGKLPIDLSQLKVDLMSFSGHKIYGPKGIGALYVRRKPRVRIEAQMHGG 233
VDA Q++ LPIDL +L D ++FS HK+YGP G+G L +R ++ ++GG
Sbjct: 11391 LVDAAQAISHLPIDLQRLDADFIAFSAHKLYGPNGLGVLSGKRHALEQLHPLLYGG 11558
>AE008760 AE006468 |AE008760| Salmonella typhimurium LT2, section 64
of 220 of the complete genome.
Length = 21723
Score = 97.1 bits (240), Expect = 8e-21
Identities = 62/181 (34%), Positives = 91/181 (50%), Gaps = 2/181 (1%)
Frame = +1
Query: 41 HRFGWQAEEAVDIARNQIADLVGA-DPREIVFTSGATESDNLAIKGAANFYQKKGKHIIT 99
H QA E+++ R Q + + A E+VF G TE NL + G +II
Sbjct: 4291 HTLSAQATESMENVRKQASRFINARSAEELVFVRGTTEGINLVANSWGTENIRAGDNIII 4470
Query: 100 SKTEHKAVLDTCRQL-EREGFEVTYLAPQRNGIIDLKELEAAMRDDTILVSIMHVNNEIG 158
S+ EH A + + L ER+G E+ + +G + L+ L A D T L++I HV+N +G
Sbjct: 4471 SEMEHHANIVPWQMLCERKGAELRVIPLHPDGTLRLETLAALFDDRTRLLAITHVSNVLG 4650
Query: 159 VVQDIAAIGEMCRARGIIYHVDATQSVGKLPIDLSQLKVDLMSFSGHKIYGPKGIGALYV 218
+ + + R G VD Q+V +D+ L D FSGHK+YGP GIG LYV
Sbjct: 4651 TENPLPDMIALARQHGAKVLVDGAQAVMHHAVDVQALDCDFYVFSGHKLYGPTGIGILYV 4830
Query: 219 R 219
+
Sbjct: 4831 K 4833
>AE012389 AE008922 |AE012389| Xanthomonas campestris pv. campestris str.
ATCC 33913, section 297 of 460 of the complete genome.
Length = 13391
Score = 88.2 bits (217), Expect = 4e-18
Identities = 59/200 (29%), Positives = 97/200 (48%), Gaps = 1/200 (0%)
Frame = +2
Query: 35 NPASRSHRFGWQAEEAVDIARNQIADLVGADPREIVFTSGATESDNLAIKGAANFYQKKG 94
N + H G +A +A + AR+++A + E+V SG T + NL A
Sbjct: 12194 NVSRAVHALGTEATDAFEGARSKLARFLNVRADELVLCSGTTFAINLVAYSWALPRLGPS 12373
Query: 95 KHIITSKTEHKAVLDTCRQL-EREGFEVTYLAPQRNGIIDLKELEAAMRDDTILVSIMHV 153
I+ S+ EH A + + + +R G + G +DL L AM + L++I HV
Sbjct: 12374 DVILVSRMEHHANIVPWQLVAQRTGATIRVAEITPEGALDLDALRKAMTPEVKLLAITHV 12553
Query: 154 NNEIGVVQDIAAIGEMCRARGIIYHVDATQSVGKLPIDLSQLKVDLMSFSGHKIYGPKGI 213
+N +G V + I R RGI+ VD +Q+ +D++ + D + +GHK+ GP G
Sbjct: 12554 SNVLGTVNPVREICREARKRGIVTVVDGSQAAPHRRVDVAGIGCDFYAITGHKMCGPTGT 12733
Query: 214 GALYVRRKPRVRIEAQMHGG 233
GAL+ RR+ + + GG
Sbjct: 12734 GALWARREHLQAMPPFLGGG 12793
>AE008836 AE006468 |AE008836| Salmonella typhimurium LT2, section 140 of
220 of the complete genome.
Length = 20653
Score = 87.4 bits (215), Expect = 7e-18
Identities = 63/215 (29%), Positives = 100/215 (46%), Gaps = 2/215 (0%)
Frame = +3
Query: 5 IYLDYSATTPVDPRVAEKMMQFMTMDGTFGNPASRSHRFGWQAEEAVDIARNQIADLVGA 64
+YLD +AT V + QF + GN + + AR + A L+ A
Sbjct: 18888 VYLDSAATALKPQAVIDATHQFYCLSA--GNVHRSQFAQAQRLTAQYEAARAKAARLLNA 19061
Query: 65 -DPREIVFTSGATESDNLAIKGAANFYQKKGKHIITSKTEHKAVLDTCRQLERE-GFEVT 122
D + IV+T G TE+ N+ + A + G II S EH A L + ++ G +V
Sbjct: 19062 PDEKSIVWTRGTTEAINMVAQCYARPRLRPGDEIIVSVAEHHANLVPWLMVAQQTGAQVI 19241
Query: 123 YLAPQRNGIIDLKELEAAMRDDTILVSIMHVNNEIGVVQDIAAIGEMCRARGIIYHVDAT 182
L + D++ L + + ++++ ++N G D+A+ A G++ VD
Sbjct: 19242 KLPLNDRRLPDVERLPELITSRSRILALGQMSNVTGGCPDLASAISAAHAAGMVVMVDGA 19421
Query: 183 QSVGKLPIDLSQLKVDLMSFSGHKIYGPKGIGALY 217
Q P D+ QL +D +FS HK+YGP GIG LY
Sbjct: 19422 QGAVHFPADVQQLDIDFYAFSAHKLYGPTGIGVLY 19526
>AE012136 AE008922 |AE012136| Xanthomonas campestris pv. campestris
str. ATCC 33913, section 44 of 460 of the complete
genome.
Length = 12224
Score = 66.6 bits (161), Expect = 1e-11
Identities = 61/203 (30%), Positives = 88/203 (43%), Gaps = 20/203 (9%)
Frame = +3
Query: 37 ASRSHR----FGWQAEEAVDI----ARNQIADLVGADPREIVFTSGATES--------DN 80
A +HR W A D AR +AD +G E++ T ATES D
Sbjct: 5601 ARHTHRVNRELSWYARREYDRDFLKARAAVADALGVSVEELMLTRNATESFVNLITQYDE 5780
Query: 81 LAIKGA---ANFYQKKGKHIITSKTEHKAVLDTCRQLEREGFEVTYLAPQRNGIIDLKEL 137
L+ A A+ + K +++ E + V T L G + Y+ R L +L
Sbjct: 5781 LSSGNAILWADADYPEFKRMMSWLAESRQVRGTMLSLPAAGTDEDYIRIYREAFDALPDL 5960
Query: 138 EAAMRDDTILVSIMHVNNEIGVVQDIAAIGEMCRARGIIYHVDATQSVGKLPIDLSQLKV 197
+ L+ + HV+N+ G+V + I + + RGI D QS G L L L V
Sbjct: 5961 K--------LMLLTHVSNQHGLVLPVREIAAIAKCRGIHVICDCAQSWGLLDFTLDDLNV 6116
Query: 198 DLMSFSGHKIYG-PKGIGALYVR 219
D F+ HK G P G+GALY+R
Sbjct: 6117 DWAVFNLHKWIGSPVGVGALYMR 6185
>AE012220 AE008922 |AE012220| Xanthomonas campestris pv. campestris str.
ATCC 33913, section 128 of 460 of the complete genome.
Length = 13056
Score = 52.8 bits (125), Expect = 2e-07
Identities = 45/177 (25%), Positives = 80/177 (45%), Gaps = 7/177 (3%)
Frame = +1
Query: 51 VDIARNQIADLVGADPREIVFTSGATESDNLAIKGAANFYQKKGKHIITSKTEHKAVLDT 110
+D ARN +A+++GADP++++ T + + ++ G I+T+ + + +
Sbjct: 10000 LDTARNCLAEVIGADPQDLLLLPNVTTAMSAVLRSR---IFAPGDQILTTDHAYLSCRNL 10170
Query: 111 CRQLEREGFEVTYLAPQR------NGIIDLKELEAAMRDDTILVSIMHVNNEIGVVQDIA 164
+ R +AP + + I+D R T L + HV + +V IA
Sbjct: 10171 LEFIARSTGAEVMVAPVKVPVQHPDAIVDAVLERVTAR--TRLAVLDHVTSPTAIVFPIA 10344
Query: 165 AIGEMCRARGIIYHVDATQSVGKLPIDLSQLKVDLMSFSGHK-IYGPKGIGALYVRR 220
+ E A GI VD + G LP+D+ + + HK + P+G G L+VRR
Sbjct: 10345 RLVERLAALGIDTLVDGAHAPGMLPLDVIAIGAAYYAGDCHKWLCTPRGAGFLHVRR 10515
>AE012112 AE008922 |AE012112| Xanthomonas campestris pv. campestris
str. ATCC 33913, section 20 of 460 of the complete
genome.
Length = 12215
Score = 48.5 bits (114), Expect = 3e-06
Identities = 47/194 (24%), Positives = 83/194 (42%), Gaps = 4/194 (2%)
Frame = -2
Query: 49 EAVDIARNQIADLVGADPREIVFTSGATESDNLAIKGAANFYQKKGKHIITSKTEHKA-V 107
E ++ R A L D + A A A N + ++G+ ++ + + + +
Sbjct: 9265 EQIEQLRALAAGLFDGDTDAVALVPSAAHGLATA---ARNLHLQRGEAVLVLEGQFPSNL 9095
Query: 108 LDTCRQLEREGFEVTYLAPQRNGIIDLKELEAAMRDDTI-LVSIMHVNNEIGVVQDIAAI 166
L R+ G ++ + G + L A + +VS+ H G D+ I
Sbjct: 9094 LIWQRRCAEVGAQIVAVPMAAGGALTEAVLRAITETAALRVVSLPHAYWLDGRQLDLDRI 8915
Query: 167 GEMCRARGIIYHVDATQSVGKLPIDLSQLKVDLMSFSGHK-IYGPKGIGALYVRRKPRVR 225
+ ARG +D +QS+G LP DL + + D + GHK + GP G+ L+V + R R
Sbjct: 8914 SDAVHARGAALVLDLSQSLGVLPTDLPRWRPDFVVSVGHKWLLGPMGLAWLWVAPRWRTR 8735
Query: 226 -IEAQMHGGGHERG 238
+ + H G + G
Sbjct: 8734 GVPIEEHWSGRDAG 8693
>AE008715 AE006468 |AE008715| Salmonella typhimurium LT2, section 23 of
220 of the complete genome.
Length = 20951
Score = 45.1 bits (105), Expect = 4e-05
Identities = 35/144 (24%), Positives = 64/144 (44%), Gaps = 15/144 (10%)
Frame = +3
Query: 133 DLKELEAAMRDDTIL--VSIMHVNNEIGVVQDIAAIGEMCRARGIIYHVDATQSVGKLPI 190
D++ ++A + D + ++++H G++ I +G + G Y VDA S G +P+
Sbjct: 13608 DVQAIDAILNADPTISHIAMVHSETTTGMLNPIDEVGALAHRYGKTYIVDAMSSFGGIPM 13787
Query: 191 DLSQLKVDLMSFSGHK-IYGPKGIGALYVR-----------RKPRVRIEAQMHGGGHERG 238
D++ L +D + S +K I G G + R R + + AQ G
Sbjct: 13788 DIAALHIDYLISSANKCIQGVPGFAFVIAREQKLAACKGHSRSLSLDLYAQWRCMEDNHG 13967
Query: 239 MRSGTLPVHQIVGMGEAYR-IAKE 261
T P H ++ +A + +AKE
Sbjct: 13968 KWRFTSPTHTVLAFAQALKELAKE 14039
>AE012124 AE008922 |AE012124| Xanthomonas campestris pv. campestris
str. ATCC 33913, section 32 of 460 of the complete
genome.
Length = 11322
Score = 44.7 bits (104), Expect = 5e-05
Identities = 33/114 (28%), Positives = 56/114 (49%), Gaps = 1/114 (0%)
Frame = -3
Query: 147 LVSIMHVNNEIGVVQDIAAIGEMCRARGIIYHVDATQSVGKLPIDLSQLKVDLMSFSGHK 206
LV+ +H + + Q + +G +CRA G + +VDAT ++G + I + +VD+++ K
Sbjct: 5110 LVATVHGDTSTTMAQPLDGLGALCRAAGALSYVDATATIGGMDIASDRWEVDVVTAGLQK 4931
Query: 207 -IYGPKGIGALYVRRKPRVRIEAQMHGGGHERGMRSGTLPVHQIVGMGEAYRIA 259
+ GP G + V I A+ H ERG+ V + + G RIA
Sbjct: 4930 CLGGPSGSAPITVSAAAAEAIFARRH---VERGI------VREDIANGSGPRIA 4796
Database: all
Posted date: Oct 27, 2008 9:57 PM
Number of letters in database: 12,243,887
Number of sequences in database: 884
Lambda K H
0.318 0.135 0.387
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 884
Number of Hits to DB: 5,020,399
Number of extensions: 63673
Number of successful extensions: 443
Number of sequences better than 1.0e-03: 11
Number of HSP's gapped: 441
Number of HSP's successfully gapped: 11
Length of query: 404
Length of database: 4,081,295
Length adjustment: 96
Effective length of query: 308
Effective length of database: 3,996,431
Effective search space: 1230900748
Effective search space used: 1230900748
Neighboring words threshold: 13
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 47 (22.7 bits)