hmmsearch - search a sequence database with a profile HMM HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: pr11_alignment.hmm [pr11_alignment] Sequence database: pr11_prot_all.fasta per-sequence score cutoff: >= 10.0 per-domain score cutoff: [none] per-sequence Eval cutoff: <= 10 per-domain Eval cutoff: [none] - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query HMM: pr11_alignment Accession: [none] Description: [none] [HMM has been calibrated; E-values are empirical estimates] Scores for complete sequences (score includes all domains): Sequence Description Score E-value N -------- ----------- ----- ------- --- A9F4Q4_SORC5/264-594 41.8 1.2e-11 4 A0A6N7Q415_9BACT/267-597 40.6 2.7e-11 4 Parsed for domains: Sequence Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- A9F4Q4_SORC5/264-594 1/4 399 421 .. 228 250 .. 18.7 3.5e-05 A0A6N7Q415_9BACT/267-597 1/4 399 421 .. 228 250 .. 18.3 4.5e-05 A9F4Q4_SORC5/264-594 3/4 620 651 .. 289 316 .. 12.0 0.0026 A0A6N7Q415_9BACT/267-597 3/4 620 651 .. 289 316 .. 10.9 0.0054 A0A6N7Q415_9BACT/267-597 2/4 552 579 .. 268 286 .. 9.7 0.011 A9F4Q4_SORC5/264-594 2/4 552 579 .. 268 286 .. 8.2 0.029 A9F4Q4_SORC5/264-594 4/4 936 946 .. 402 412 .. 2.9 0.92 A0A6N7Q415_9BACT/267-597 4/4 936 946 .. 402 412 .. 1.8 1.9 Alignments of top-scoring domains: A9F4Q4_SORC5/264-594: domain 1 of 4, from 399 to 421: score 18.7, E = 3.5e-05 *->llrGlRgAaRiisqeiPaavAIv<-* l + +R+Aa+iis+eiP+avAIv A9F4Q4_SOR 399 LGGXIRSAAQIISYEIPGAVAIV 421 A0A6N7Q415_9BACT/267-597: domain 1 of 4, from 399 to 421: score 18.3, E = 4.5e-05 *->llrGlRgAaRiisqeiPaavAIv<-* l + lRgA+R+++qe+Pa+vAIv A0A6N7Q415 399 LRGXLRGAGRVLLQELPAVVAIV 421 A9F4Q4_SORC5/264-594: domain 3 of 4, from 620 to 651: score 12.0, E = 0.0026 *->FRnPitfvlFfa..yftsaiaadn..RaPsal<-* FRnPitf+lFf+ + t a+a++n RaP++l A9F4Q4_SOR 620 FRNPITFALFFLxyFTTXALAEGNxxRAPFDL 651 A0A6N7Q415_9BACT/267-597: domain 3 of 4, from 620 to 651: score 10.9, E = 0.0054 *->FRnPitfvlFfayf..tsaiaadn..RaPsal<-* FRnP+tfvlF++ f ++ +i+ad+ Ra+sal A0A6N7Q415 620 FRNPATFVLFLVXFltSXMITADGxxRASSAL 651 A0A6N7Q415_9BACT/267-597: domain 2 of 4, from 552 to 579: score 9.7, E = 0.011 *->QGGQGgSlLd.........eaGGWPWhW<-* QGGQGgS+Ld aGGWPWhW A0A6N7Q415 552 QGGQGGSPLDxxxxxxxxxXAGGWPWHW 579 A9F4Q4_SORC5/264-594: domain 2 of 4, from 552 to 579: score 8.2, E = 0.029 *->QGGQGgSlLd.........eaGGWPWhW<-* QGG+G+SlLd +GGWPWhW A9F4Q4_SOR 552 QGGAGPSLLDxxxxxxxxxXVGGWPWHW 579 A9F4Q4_SORC5/264-594: domain 4 of 4, from 936 to 946: score 2.9, E = 0.92 *->RwalPRlridq<-* Rw+lPR+ridq A9F4Q4_SOR 936 RWTLPRVRIDQ 946 A0A6N7Q415_9BACT/267-597: domain 4 of 4, from 936 to 946: score 1.8, E = 1.9 *->RwalPRlridq<-* RwalPRl+++q A0A6N7Q415 936 RWALPRLGAEQ 946 Histogram of all scores: score obs exp (one = represents 22 sequences) ----- --- --- -18 2 0|= -17 28 0|== -16 141 1|*====== -15 334 114|=====*========== -14 597 872|============================ * -13 890 2054|========================================= * -12 967 2450|============================================ * -11 1165 2000|===================================================== * -10 675 1328|=============================== * -9 537 789|========================= * -8 1257 443|====================*===================================== -7 816 240|==========*=========================== -6 799 128|=====*=============================== -5 381 68|===*============== -4 616 36|=*========================== -3 264 19|*=========== -2 305 10|*============= -1 390 5|*================= 0 156 2|*======= 1 79 1|*=== 2 31 0|== 3 92 0|===== 4 20 0|= 5 4 0|= 6 17 0|= 7 0 0| 8 1 0|= > 9 5 -|= % Statistical details of theoretical EVD fit: mu = -11.6591 lambda = 0.6434 chi-sq statistic = 59835.8047 P(chi-square) = 0 Total sequences searched: 10569 Whole sequence top hits: tophits_s report: Total hits: 2 Satisfying E cutoff: 2 Total memory: 20K Domain top hits: tophits_s report: Total hits: 11 Satisfying E cutoff: 11 Total memory: 23K