RID: B37VBZD311N Job Title:P04585:RecName: Full=Gag-Pol polyprotein;... Program: BLASTP Query: RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol; Contains: RecName: Full=Matrix protein p17; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Spacer peptide 1; Short=SP1; AltName: Full=p2; Contains: RecName: Full=Nucleocapsid protein p7; Short=NC; Contains: RecName: Full=Transframe peptide; Short=TF; Contains: RecName: Full=p6-pol; Short=p6*; Contains: RecName: Full=Protease; AltName: Full=PR; AltName: Full=Retropepsin; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; AltName: Full=Exoribonuclease H; AltName: Full=p66 RT; Contains: RecName: Full=p51 RT; Contains: RecName: Full=p15; Contains: RecName: Full=Integrase; Short=IN [HIV-1 M:B_HXB2R] ID: P04585.4(amino acid) Length: 1435 Subject:RecName: Full=Pro-Pol polyprotein; AltName: Full=Pr125Pol; Contains: RecName: Full=Protease/Reverse transcriptase/ribonuclease H; AltName: Full=p87Pro-RT-RNaseH; Contains: RecName: Full=Protease/Reverse transcriptase; AltName: Full=p65Pro-RT; Contains: RecName: Full=Ribonuclease H; Short=RNase H; Contains: RecName: Full=Integrase; Short=IN; AltName: Full=p42In [Human spumaretrovirus] ID: P14350.2(amino acid) Length: 1143 Sequences producing significant alignments: Max Total Query E Per. Description Score Score cover Value Ident Accession RecName: Full=Pro-Pol polyprotein; AltName: Full=Pr125Pol;... 83.6 228 52% 6e-20 25.87 P14350.2 Alignments: >RecName: Full=Pro-Pol polyprotein; AltName: Full=Pr125Pol; Contains: RecName: Full=Protease/Reverse transcriptase/ribonuclease H; AltName: Full=p87Pro-RT-RNaseH; Contains: RecName: Full=Protease/Reverse transcriptase; AltName: Full=p65Pro-RT; Contains: RecName: Full=Ribonuclease H; Short=RNase H; Contains: RecName: Full=Integrase; Short=IN; AltName: Full=p42In [Human spumaretrovirus] Sequence ID: P14350.2 Length: 1143 >pro-pol protein, partial [Human spumaretrovirus] Sequence ID: AAB48112.1 Length: 1143 >pol [Human foamy virus] Sequence ID: CAA68997.1 Length: 1143 >pol [Human foamy virus] Sequence ID: CAA68999.1 Length: 1143 >pol [Human foamy virus] Sequence ID: CAA69003.1 Length: 1143 Range 1: 166 to 673 Score:83.6 bits(205), Expect:6e-20, Method:Compositional matrix adjust., Identities:141/545(26%), Positives:240/545(44%), Gaps:101/545(18%) Query 609 KQWPLTEEKIKALVEICTEMEKEGKISKIGPENP-YNTPVFAIKKKDSTKWRKLVDFREL 667 KQ+P+ + ++ + ++ K+G ++ P+N NTPV+ + K D +WR ++D+RE+ Sbjct 166 KQYPINPKAKPSIQIVIDDLLKQGVLT---PQNSTMNTPVYPVPKPDG-RWRMVLDYREV 221 Query 668 NKRTQDFWEVQLGIPHPAGLK----KKKSVTVLDVGDAYFSVPLDEDFRKYTAFTIPSIN 723 NK T Q H AG+ ++K T LD+ + +++ P+ + TAFT Sbjct 222 NK-TIPLTAAQNQ--HSAGILATIVRQKYKTTLDLANGFWAHPITPESYWLTAFTWQ--- 275 Query 724 NETPGIRYQYNVLPQGWKGSPAIFQSSMTKILEPFRKQNPDIVIYQYMDDLYVGSDLEIG 783 G +Y + LPQG+ SPA+F + + +L K+ P++ + Y+DD+Y+ D + Sbjct 276 ----GKQYCWTRLPQGFLNSPALFTADVVDLL----KEIPNVQV--YVDDIYLSHD-DPK 324 Query 784 QHRTKIEELRQHLLRWGLTTPDKKH---QKEPPFLWMGYELH------PDKWTVQPI-VL 833 +H ++E++ Q LL+ G KK QK FL G+ + D + + + + Sbjct 325 EHVQQLEKVFQILLQAGYVVSLKKSEIGQKTVEFL--GFNITKEGRGLTDTFKTKLLNIT 382 Query 834 PEKDSWTVNDIQKLVGKLNWASQIYPGIK--VRQLCKLL------------RGTKALTEV 879 P KD + +Q ++G LN+A P V+ L L+ TK L V Sbjct 383 PPKD---LKQLQSILGLLNFARNFIPNFAELVQPLYNLIASAKGKYIEWSEENTKQLNMV 439 Query 880 I-PLTEEAELE--LAENREILKEPVHGVYYDPSKDLIAEIQKQGQGQWTYQIYQEPFKNL 936 I L + LE L E R ++K V PS + + G+ Y Y L Sbjct 440 IEALNTASNLEERLPEQRLVIK-----VNTSPSAGYVRYYNETGKKPIMYLNYVFSKAEL 494 Query 937 KTGKYARMRGAHTNDVKQLTEAVQKITTESIVIWG---------KTP---KFKLPIQKET 984 K++ + T K L +A+ + I+++ KTP + LPI+ T Sbjct 495 ---KFSMLEKLLTTMHKALIKAMDLAMGQEILVYSPIVSMTKIQKTPLPERKALPIRWIT 551 Query 985 WETWW----TEYWQATWIPEWEFVNTPPLVKLWYQLEKEPIVGAETFYVDGAANRE---T 1037 W T+ ++ +PE + + P + K P FY DG+A + T Sbjct 552 WMTYLEDPRIQFHYDKTLPELKHI--PDVYTSSQSPVKHPSQYEGVFYTDGSAIKSPDPT 609 Query 1038 KLGKAG----YVTNRGRQKV-----VTLTDTTNQKTELQAIYL----ALQDSGLEVNIVT 1084 K AG + T + +V + L + T Q E+ A+ AL+ G V ++T Sbjct 610 KSNNAGMGIVHATYKPEYQVLNQWSIPLGNHTAQMAEIAAVEFACKKALKIPG-PVLVIT 668 Query 1085 DSQYA 1089 DS Y Sbjct 669 DSFYV 673 Range 2: 893 to 985 Score:46.6 bits(109), Expect:1e-08, Method:Compositional matrix adjust., Identities:29/93(31%), Positives:44/93(47%), Gaps:0/93(0%) Query 1220 ILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSNFTGATVRAACWW 1279 +LV V +G+ A + T L L K IH+D G+ FT +T Sbjct 893 VLVVVDGMTGFTWLYPTKAPSTSATVKSLNVLTSIAIPKVIHSDQGAAFTSSTFAEWAKE 952 Query 1280 AGIKQEFGIPYNPQSQGVVESMNKELKKIIGQV 1312 GI EF PY+PQS VE N ++K+++ ++ Sbjct 953 RGIHLEFSTPYHPQSGSKVERKNSDIKRLLTKL 985 Range 3: 665 to 695 Score:24.3 bits(51), Expect:0.073, Method:Compositional matrix adjust., Identities:11/31(35%), Positives:20/31(64%), Gaps:1/31(3%) Query 1021 IVGAETFYVDGAANRETKLGKA-GYVTNRGR 1050 +V ++FYV +AN+E K+ G+V N+ + Sbjct 665 LVITDSFYVAESANKELPYWKSNGFVNNKKK 695 Range 4: 1030 to 1070 Score:20.4 bits(41), Expect:1.1, Method:Compositional matrix adjust., Identities:11/45(24%), Positives:20/45(44%), Gaps:4/45(8%) Query 115 AQQAAADTGHSNQVSQNYPIVQNIQGQMVHQAISPRTLNAWVKVV 159 A Q D ++S ++Q I+ + H + P + +W VV Sbjct 1030 ANQDTLDLTREEELS----LLQEIRTSLYHPSTPPASSRSWSPVV 1070 Range 5: 815 to 882 Score:18.5 bits(36), Expect:3.9, Method:Compositional matrix adjust., Identities:19/72(26%), Positives:31/72(43%), Gaps:4/72(5%) Query 511 LLDTGADDTVLEEMSLPGRWKPKMIGGIGGFIKVRQYDQILIEICGHKAIGTVLVGPTPV 570 L TG + T+L+ +L W P M + ++ + Q LI +KA G +L P Sbjct 815 LAHTGREATLLKIANL--YWWPNMRKDVVK--QLGRCQQCLITNASNKASGPILRPDRPQ 870 Query 571 NIIGRNLLTQIG 582 + + IG Sbjct 871 KPFDKFFIDYIG 882 Range 6: 986 to 1053 Score:17.7 bits(34), Expect:7.4, Method:Compositional matrix adjust., Identities:21/68(31%), Positives:32/68(47%), Gaps:11/68(16%) Query 572 IIGR-----NLLTQIGCTLNFPISPI-ETVPVKLKPGMDG--PKVKQWPLT---EEKIKA 620 ++GR +LL + LN SP+ + P +L G+D P Q L EE++ Sbjct 986 LVGRPTKWYDLLPVVQLALNNTYSPVLKYTPHQLLFGIDSNTPFANQDTLDLTREEELSL 1045 Query 621 LVEICTEM 628 L EI T + Sbjct 1046 LQEIRTSL 1053 Range 7: 997 to 1045 Score:17.3 bits(33), Expect:9.0, Method:Compositional matrix adjust., Identities:15/55(27%), Positives:23/55(41%), Gaps:6/55(10%) Query 1066 LQAIYLALQDSGLEVNIVTDSQYALGIIQAQPDQSESELVNQIIEQLIKKEKVYL 1120 L + LAL ++ V T Q GI S + NQ L ++E++ L Sbjct 997 LPVVQLALNNTYSPVLKYTPHQLLFGI------DSNTPFANQDTLDLTREEELSL 1045