BLASTN 2.15.0+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.



Database: ../downloads/nepgen.fna
           7 sequences; 100,286,401 total letters



Query= CP014225.1:complement(926804-928359)|16S_rRNA|Escherichia coli str.
K-12 substr. MG1655 strain K-12

Length=1556
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

NC_003279.8 Caenorhabditis elegans chromosome I                       58.1    9e-07


>NC_003279.8 Caenorhabditis elegans chromosome I
Length=15072434

 Score = 58.1 bits (63),  Expect = 9e-07
 Identities = 45/54 (83%), Gaps = 0/54 (0%)
 Strand=Plus/Plus

Query  1494      AAGTCGTAACAAGGTAACCGTAGGGGAACCTGCGGTTGGATCACCTCCTTACCT  1547
                 |||||||||||||||| | ||||| |||||||| | ||||||| | || | |||
Sbjct  15063791  AAGTCGTAACAAGGTAGCTGTAGGTGAACCTGCAGCTGGATCATCGCCGTGCCT  15063844


 Score = 58.1 bits (63),  Expect = 9e-07
 Identities = 45/54 (83%), Gaps = 0/54 (0%)
 Strand=Plus/Plus

Query  1494      AAGTCGTAACAAGGTAACCGTAGGGGAACCTGCGGTTGGATCACCTCCTTACCT  1547
                 |||||||||||||||| | ||||| |||||||| | ||||||| | || | |||
Sbjct  15070988  AAGTCGTAACAAGGTAGCTGTAGGTGAACCTGCAGCTGGATCATCGCCGTGCCT  15071041


 Score = 48.2 bits (52),  Expect = 5e-04
 Identities = 53/71 (75%), Gaps = 0/71 (0%)
 Strand=Plus/Plus

Query  1339      GGAATCGCTAGTAATCGTGGATCAGAATGCCACGGTGAATACGTTCCCGGGCCTTGTACA  1398
                 |||||  |||||||  |||  |||  |   |||| ||| ||||| || |  | |||||||
Sbjct  15063612  GGAATGCCTAGTAAGTGTGAGTCATCAGCTCACGTTGATTACGTCCCTGCCCTTTGTACA  15063671

Query  1399      CACCGCCCGTC  1409
                 |||||||||||
Sbjct  15063672  CACCGCCCGTC  15063682


 Score = 48.2 bits (52),  Expect = 5e-04
 Identities = 53/71 (75%), Gaps = 0/71 (0%)
 Strand=Plus/Plus

Query  1339      GGAATCGCTAGTAATCGTGGATCAGAATGCCACGGTGAATACGTTCCCGGGCCTTGTACA  1398
                 |||||  |||||||  |||  |||  |   |||| ||| ||||| || |  | |||||||
Sbjct  15070809  GGAATGCCTAGTAAGTGTGAGTCATCAGCTCACGTTGATTACGTCCCTGCCCTTTGTACA  15070868

Query  1399      CACCGCCCGTC  1409
                 |||||||||||
Sbjct  15070869  CACCGCCCGTC  15070879



Lambda      K        H
   0.634    0.408    0.912 

Gapped
Lambda      K        H
   0.625    0.410    0.780 

Effective search space used: 153137024346


  Database: ../downloads/nepgen.fna
    Posted date:  Nov 11, 2023  5:25 PM
  Number of letters in database: 100,286,401
  Number of sequences in database:  7



Matrix: blastn matrix 2 -3
Gap Penalties: Existence: 5, Extension: 2