BLASTN 2.15.0+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.



Database: ../downloads/nepgen.fna
           7 sequences; 100,286,401 total letters



Query= CP014225.1:2234710-2237641|23S_rRNA|Escherichia coli str. K-12
substr. MG1655 strain K-12

Length=2932
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

NC_003279.8 Caenorhabditis elegans chromosome I                       81.5    2e-13


>NC_003279.8 Caenorhabditis elegans chromosome I
Length=15072434

 Score = 81.5 bits (89),  Expect = 2e-13
 Identities = 121/172 (70%), Gaps = 0/172 (0%)
 Strand=Plus/Plus

Query  2442      AAAAGGTACTCCGGGGATAACAGGCTGATACCGCCCAAGAGTTCATATCGACGGCGGTGT  2501
                 ||||| |||  | |||||||| ||||  |  |  ||||| || |||| |||||  | | |
Sbjct  15060554  AAAAGTTACCACAGGGATAACTGGCTTGTGGCAGCCAAGCGTCCATAGCGACGTTGCTTT  15060613

Query  2502      TTGGCACCTCGATGTCGGCTCATCACATCCTGGGGCTGAAGTAGGTCCCAAGGGTATGGC  2561
                 |||   | ||||||||||||| ||  ||| | | |  | || |    ||||| ||  |  
Sbjct  15060614  TTGATCCTTCGATGTCGGCTCTTCCTATCATTGCGAAGCAGAATTCGCCAAGCGTTGGAT  15060673

Query  2562      TGTTCGCCATTTAAAGTGGTACGCGAGCTGGGTTTAGAACGTCGTGAGACAG  2613
                 ||||| ||   |||   || ||| |||||||||||||| |||||||||||||
Sbjct  15060674  TGTTCACCCACTAATAGGGAACGTGAGCTGGGTTTAGACCGTCGTGAGACAG  15060725


 Score = 81.5 bits (89),  Expect = 2e-13
 Identities = 121/172 (70%), Gaps = 0/172 (0%)
 Strand=Plus/Plus

Query  2442      AAAAGGTACTCCGGGGATAACAGGCTGATACCGCCCAAGAGTTCATATCGACGGCGGTGT  2501
                 ||||| |||  | |||||||| ||||  |  |  ||||| || |||| |||||  | | |
Sbjct  15067750  AAAAGTTACCACAGGGATAACTGGCTTGTGGCAGCCAAGCGTCCATAGCGACGTTGCTTT  15067809

Query  2502      TTGGCACCTCGATGTCGGCTCATCACATCCTGGGGCTGAAGTAGGTCCCAAGGGTATGGC  2561
                 |||   | ||||||||||||| ||  ||| | | |  | || |    ||||| ||  |  
Sbjct  15067810  TTGATCCTTCGATGTCGGCTCTTCCTATCATTGCGAAGCAGAATTCGCCAAGCGTTGGAT  15067869

Query  2562      TGTTCGCCATTTAAAGTGGTACGCGAGCTGGGTTTAGAACGTCGTGAGACAG  2613
                 ||||| ||   |||   || ||| |||||||||||||| |||||||||||||
Sbjct  15067870  TGTTCACCCACTAATAGGGAACGTGAGCTGGGTTTAGACCGTCGTGAGACAG  15067921


 Score = 60.8 bits (66),  Expect = 1e-07
 Identities = 69/93 (74%), Gaps = 0/93 (0%)
 Strand=Plus/Plus

Query  1899      AAGCCCCGGTAAACGGCGGCCGTAACTATAACGGTCCTAAGGTAGCGAAATTCCTTGTCG  1958
                 |||| | ||||||||||||  |||||||| ||  || ||||||||| |||| ||| ||| 
Sbjct  15067172  AAGCGCGGGTAAACGGCGGGAGTAACTATGACTCTCTTAAGGTAGCCAAATGCCTCGTCA  15067231

Query  1959      GGTAAGTTCCGACCTGCACGAATGGCGTAATGA  1991
                   ||| |   |||  ||| ||||||  ||| ||
Sbjct  15067232  TTTAATTGTTGACGCGCATGAATGGATTAACGA  15067264


 Score = 55.4 bits (60),  Expect = 6e-06
 Identities = 78/105 (74%), Gaps = 5/105 (5%)
 Strand=Plus/Plus

Query  425       TCCTCCAAGGCTAAATA-CTCCT-GACTGACCGATAGTGAACCAGTACCGTGAGGGAAAG  482
                 || || ||||||||||| |  || || ||  |||||| |||| |||||||||||||||||
Sbjct  15065154  TCATCTAAGGCTAAATATCGACTCGATTG--CGATAGCGAACAAGTACCGTGAGGGAAAG  15065211

Query  483       GCGAAAAGAACCCCGGCGAGGGGAGTGAAAAAGAACCTGAAACCG  527
                   | |||| ||   |  || | ||||  || ||||| ||||| ||
Sbjct  15065212  TTGCAAAGGACTTTGAAGA-GAGAGTTCAAGAGAACGTGAAATCG  15065255


 Score = 52.7 bits (57),  Expect = 8e-05
 Identities = 68/93 (73%), Gaps = 1/93 (1%)
 Strand=Plus/Plus

Query  198       GAACTGAAACATCTAAGTACCCCGAGGAAAAGAAATCAACCGAGATTCCCCCAGTAGCGG  257
                 ||||| || ||| | | |   | ||||||||||||  ||    |||||||  |||| |||
Sbjct  15064869  GAACTTAAGCATATCATTTAGCGGAGGAAAAGAAACTAAAAAGGATTCCCTTAGTAACGG  15064928

Query  258       CGAGCGAACGGGGAGCAGCCCAGAGCCTGAATC  290
                 |||| |||  ||||  ||||||| ||| |||||
Sbjct  15064929  CGAGTGAAACGGGAAGAGCCCAGCGCC-GAATC  15064960


 Score = 44.6 bits (48),  Expect = 0.011
 Identities = 30/34 (88%), Gaps = 0/34 (0%)
 Strand=Plus/Plus

Query  2234      GACAGTGTCTGGTGGGTAGTTTGACTGGGGCGGT  2267
                 |||||||||  | ||| |||||||||||||||||
Sbjct  15060345  GACAGTGTCAAGCGGGGAGTTTGACTGGGGCGGT  15060378


 Score = 44.6 bits (48),  Expect = 0.011
 Identities = 30/34 (88%), Gaps = 0/34 (0%)
 Strand=Plus/Plus

Query  2234      GACAGTGTCTGGTGGGTAGTTTGACTGGGGCGGT  2267
                 |||||||||  | ||| |||||||||||||||||
Sbjct  15067541  GACAGTGTCAAGCGGGGAGTTTGACTGGGGCGGT  15067574



Lambda      K        H
   0.634    0.408    0.912 

Gapped
Lambda      K        H
   0.625    0.410    0.780 

Effective search space used: 291030526282


  Database: ../downloads/nepgen.fna
    Posted date:  Nov 11, 2023  5:25 PM
  Number of letters in database: 100,286,401
  Number of sequences in database:  7



Matrix: blastn matrix 2 -3
Gap Penalties: Existence: 5, Extension: 2