RID: YHZ2BAYS016 Job Title:sp|P0C6F8|R1A_BCHK3 Replicase polyprotein... Program: BLASTP Database: swissprot Non-redundant UniProtKB/SwissProt sequences Query #1: sp|P0C6F8|R1A_BCHK3 Replicase polyprotein 1a OS=Bat coronavirus HKU3 OX=442736 GN=1a PE=3 SV=1 Query ID: lcl|Query_5970509 Length: 4376 Sequences producing significant alignments: Scientific Common Max Total Query E Per. Acc. Description Name Name Taxid Score Score cover Value Ident Len Accession RecName: Full=Replicase polyprotein 1a; Short=pp1a; AltName:... Bat SARS cor... NA 442736 9117 9117 100% 0.0 100.00 4376 P0C6F8.1 RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName:... Bat SARS cor... NA 442736 9088 9088 100% 0.0 100.00 7067 P0C6W2.1 RecName: Full=Replicase polyprotein 1a; Short=pp1a; AltName:... Severe acute... NA 694009 8595 8595 100% 0.0 94.05 4382 P0C6U8.1 RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName:... Severe acute... NA 694009 8561 8561 100% 0.0 94.04 7073 P0C6X7.1 RecName: Full=Replicase polyprotein 1a; Short=pp1a; AltName:... Bat SARS CoV... NA 349344 8549 8549 100% 0.0 93.54 4380 P0C6T7.1 RecName: Full=Replicase polyprotein 1a; Short=pp1a; AltName:... Bat CoV 279/... NA 389167 8517 8517 100% 0.0 93.62 4388 P0C6F5.1 RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName:... Bat SARS CoV... NA 349344 8517 8517 100% 0.0 93.53 7071 P0C6W6.1 RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName:... Bat CoV 279/... NA 389167 8482 8482 100% 0.0 93.62 7079 P0C6V9.1 RecName: Full=Replicase polyprotein 1a; Short=pp1a; AltName:... Severe acute... NA 2697049 7480 7480 100% 0.0 80.30 4405 P0DTC1.1 RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName:... Severe acute... NA 2697049 7448 7448 100% 0.0 80.28 7096 P0DTD1.1 RecName: Full=Replicase polyprotein 1a; Short=pp1a; AltName:... Rousettus ba... NA 694006 2297 2570 97% 0.0 40.04 4248 P0C6T6.1 RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName:... Rousettus ba... NA 694006 2289 2553 90% 0.0 40.04 6930 P0C6W5.1 RecName: Full=Replicase polyprotein 1a; Short=pp1a; AltName:... Betacoronavi... NA 1263720 2202 2502 96% 0.0 38.13 4391 K9N638.1 RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName:... Betacoronavi... NA 1263720 2197 2497 98% 0.0 37.14 7078 K9N7C7.1 RecName: Full=Replicase polyprotein 1a; Short=pp1a; AltName:... Pipistrellus... NA 694008 2174 2519 94% 0.0 38.96 4481 P0C6T5.1 RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName:... Pipistrellus... NA 694008 2169 2514 94% 0.0 38.94 7182 P0C6W4.1 RecName: Full=Replicase polyprotein 1a; Short=pp1a; AltName:... Bovine respi... NA 233264 1890 2051 75% 0.0 37.95 4383 P0C6T9.1 RecName: Full=Replicase polyprotein 1a; Short=pp1a; AltName:... Bovine enter... NA 233262 1888 2047 75% 0.0 37.95 4383 P0C6T8.1 RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName:... Bovine respi... NA 233264 1881 2041 75% 0.0 37.90 7094 P0C6W8.1 RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName:... Bovine enter... NA 233262 1880 2039 75% 0.0 37.90 7094 P0C6W7.1 RecName: Full=Replicase polyprotein 1a; Short=pp1a; AltName:... Human corona... NA 31631 1878 2034 74% 0.0 37.60 4383 P0C6U7.1 RecName: Full=Replicase polyprotein 1a; Short=pp1a; AltName:... Bovine coron... NA 11133 1875 2029 75% 0.0 37.89 4383 P0C6U1.1 RecName: Full=Replicase polyprotein 1a; Short=pp1a; AltName:... Bovine coron... NA 11132 1871 2028 75% 0.0 37.68 4383 P0C6U0.1 RecName: Full=Replicase polyprotein 1a; Short=pp1a; AltName:... Murine hepat... NA 76344 1870 2002 74% 0.0 37.47 4416 P0C6U9.1 RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName:... Bovine coron... NA 11133 1867 2021 75% 0.0 37.71 7059 P0C6X0.1 RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName:... Human corona... NA 31631 1866 2022 74% 0.0 37.42 7095 P0C6X6.1 RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName:... Bovine coron... NA 11132 1864 2021 75% 0.0 37.50 7094 P0C6W9.1 RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName:... Murine hepat... NA 76344 1860 1993 79% 0.0 37.45 7124 P0C6X8.1 RecName: Full=Replicase polyprotein 1a; Short=pp1a; AltName:... Bat coronavi... NA 389230 1858 2461 90% 0.0 43.58 4441 P0C6F7.1 RecName: Full=Replicase polyprotein 1a; Short=pp1a; AltName:... Tylonycteris... NA 694007 1857 2470 91% 0.0 43.44 4434 P0C6T4.1 RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName:... Bat coronavi... NA 389230 1855 2459 90% 0.0 43.58 7126 P0C6W1.1 RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName:... Tylonycteris... NA 694007 1854 2467 91% 0.0 43.53 7119 P0C6W3.1 RecName: Full=Replicase polyprotein 1a; Short=pp1a; AltName:... Murine hepat... NA 11142 1853 2009 78% 0.0 37.47 4468 P0C6V0.1 RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName:... Murine hepat... NA 11142 1844 2001 77% 0.0 37.48 7176 P0C6X9.1 RecName: Full=Replicase polyprotein 1a; Short=pp1a; AltName:... Murine hepat... NA 11144 1841 1979 72% 0.0 37.13 4474 P0C6V1.1 RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName:... Murine hepat... NA 11144 1837 1975 71% 0.0 37.22 7180 P0C6Y0.1 RecName: Full=Replicase polyprotein 1a; Short=pp1a; AltName:... Human corona... NA 443240 1821 1983 76% 0.0 37.13 4441 P0C6U4.1 RecName: Full=Replicase polyprotein 1a; Short=pp1a; AltName:... Human corona... NA 443241 1817 1977 76% 0.0 37.17 4421 P0C6U5.1 RecName: Full=Replicase polyprotein 1a; Short=pp1a; AltName:... Human corona... NA 443239 1815 1974 76% 0.0 37.23 4471 P0C6U3.1 RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName:... Human corona... NA 443240 1814 1977 76% 0.0 37.12 7152 P0C6X3.1 RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName:... Human corona... NA 443241 1813 1974 76% 0.0 37.20 7132 P0C6X4.1 RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName:... Human corona... NA 443239 1806 1967 76% 0.0 37.23 7182 P0C6X2.1 RecName: Full=Replicase polyprotein 1a; Short=pp1a; AltName:... Scotophilus ... NA 693999 1210 1288 55% 0.0 34.65 4128 P0C6F6.1 RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName:... Scotophilus ... NA 693999 1207 1284 55% 0.0 34.68 6793 P0C6W0.1 RecName: Full=Replicase polyprotein 1a; Short=pp1a; AltName:... Porcine epid... NA 229032 1195 1276 55% 0.0 34.61 4117 P0C6V6.1 RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName:... Porcine epid... NA 229032 1193 1275 55% 0.0 34.66 6781 P0C6Y4.1 RecName: Full=Replicase polyprotein 1a; Short=pp1a; AltName:... Human corona... NA 277944 1179 1260 52% 0.0 35.37 4060 P0C6U6.1 RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName:... Human corona... NA 277944 1177 1257 52% 0.0 35.37 6729 P0C6X5.1 RecName: Full=Replicase polyprotein 1a; Short=pp1a; AltName:... Human corona... NA 11137 1174 1265 55% 0.0 34.10 4085 P0C6U2.1 RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName:... Human corona... NA 11137 1169 1261 55% 0.0 34.10 6758 P0C6X1.1 RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName:... Feline infec... NA 33734 1116 1173 52% 0.0 33.26 6709 Q98VG9.2 RecName: Full=Replicase polyprotein 1a; Short=pp1a; AltName:... Porcine tran... NA 11151 1111 1172 52% 0.0 32.91 4017 P0C6V2.1 RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName:... Porcine tran... NA 11151 1109 1170 52% 0.0 32.91 6684 P0C6Y5.1 RecName: Full=Replicase polyprotein 1a; Short=pp1a; AltName:... Avian infect... NA 11122 1100 1149 51% 0.0 33.48 3951 P0C6V3.1 RecName: Full=Replicase polyprotein 1a; Short=pp1a; AltName:... Avian infect... NA 11127 1099 1148 52% 0.0 33.57 3953 P0C6V5.1 RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName:... Avian infect... NA 11122 1094 1143 53% 0.0 32.81 6629 P0C6Y1.1 RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName:... Avian infect... NA 160235 1094 1143 53% 0.0 32.81 6629 P0C6Y2.1 RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName:... Avian infect... NA 11127 1093 1142 52% 0.0 33.56 6631 P0C6Y3.1 RecName: Full=Uncharacterized protein PAE1111 [Pyrobaculum... Pyrobaculum ... NA 178306 71.2 71.2 2% 3e-12 39.62 182 Q8ZXT3.1 RecName: Full=Uncharacterized protein Saci_1252 [Sulfolobus... Sulfolobus a... NA 330779 71.2 71.2 3% 3e-12 38.14 181 Q4J9D2.1 RecName: Full=Uncharacterized protein SSO2899 [Saccharolobus... Saccharolobu... NA 273057 65.9 65.9 2% 2e-10 39.62 177 Q97UU4.1 RecName: Full=Uncharacterized protein TM_0508 [Thermotoga... Thermotoga m... NA 243274 70.1 70.1 3% 3e-10 38.84 599 Q9WYX8.1 RecName: Full=Uncharacterized protein STK_23830 [Sulfurisphaer... Sulfurisphae... NA 273063 65.1 65.1 2% 5e-10 38.68 182 Q96XY5.1 RecName: Full=Protein mono-ADP-ribosyltransferase PARP9;... Mus musculus house mouse 10090 60.1 60.1 3% 4e-07 31.69 866 Q8CAS9.2 RecName: Full=Protein mono-ADP-ribosyltransferase PARP14;... Homo sapiens human 9606 60.1 60.1 3% 6e-07 32.80 1801 Q460N5.3 RecName: Full=Uncharacterized protein FN1951 [Fusobacterium... Fusobacteriu... NA 190304 51.6 51.6 2% 2e-05 34.58 175 Q8RHQ2.1 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Venezuelan e... NA 11038 53.5 53.5 2% 6e-05 35.65 2493 P27282.3 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Venezuelan e... NA 36385 53.5 53.5 2% 6e-05 35.65 2493 P36328.2 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Venezuelan e... NA 36382 52.8 52.8 2% 8e-05 34.78 2485 P36327.3 RecName: Full=Protein mono-ADP-ribosyltransferase PARP9;... Homo sapiens human 9606 50.4 50.4 3% 4e-04 27.97 854 Q8IXQ6.2 RecName: Full=Uncharacterized protein PH1513 [Pyrococcus... Pyrococcus h... NA 70601 45.1 45.1 3% 0.004 29.41 190 O59182.1 RecName: Full=Uncharacterized protein PYRAB06560 [Pyrococcus... Pyrococcus a... NA 272844 44.3 44.3 3% 0.006 32.03 183 Q9V0Y3.2 Alignments: >RecName: Full=Replicase polyprotein 1a; Short=pp1a; AltName: Full=ORF1a polyprotein; Contains: RecName: Full=Non-structural protein 1; Short=nsp1; AltName: Full=Leader protein; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p65 homolog; Contains: RecName: Full=Papain-like protease nsp3; Short=PL-PRO; AltName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=PL2-PRO; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; Contains: RecName: Full=3C-like proteinase nsp5; Short=3CL-PRO; Short=3CLp; AltName: Full=nsp5; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; Contains: RecName: Full=RNA-capping enzyme subunit nsp9; AltName: Full=Non-structural protein 9; Short=nsp9; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; Contains: RecName: Full=Non-structural protein 11; Short=nsp11 [Bat SARS coronavirus HKU3] Sequence ID: P0C6F8.1 Length: 4376 Range 1: 1 to 4376 Score:9117 bits(23658), Expect:0.0, Method:Compositional matrix adjust., Identities:4376/4376(100%), Positives:4376/4376(100%), Gaps:0/4376(0%) Query 1 MESLVLGVNEKTHVQLSLPVLQVRDVLVRGFGDSVEEALSEAREHLKNGTCGLVELEKGV 60 MESLVLGVNEKTHVQLSLPVLQVRDVLVRGFGDSVEEALSEAREHLKNGTCGLVELEKGV Sbjct 1 MESLVLGVNEKTHVQLSLPVLQVRDVLVRGFGDSVEEALSEAREHLKNGTCGLVELEKGV 60 Query 61 LPQLEQPYVFIKRSDALSTNHGHKVVELVAELDGIQFGRSGITLGVLVPHVGETPIAYRN 120 LPQLEQPYVFIKRSDALSTNHGHKVVELVAELDGIQFGRSGITLGVLVPHVGETPIAYRN Sbjct 61 LPQLEQPYVFIKRSDALSTNHGHKVVELVAELDGIQFGRSGITLGVLVPHVGETPIAYRN 120 Query 121 VLLRKNGNKGAGGHSFGIDLKSYDLGDELGTDPIEDYEQNWNTKHGSGALRELTRELNGG 180 VLLRKNGNKGAGGHSFGIDLKSYDLGDELGTDPIEDYEQNWNTKHGSGALRELTRELNGG Sbjct 121 VLLRKNGNKGAGGHSFGIDLKSYDLGDELGTDPIEDYEQNWNTKHGSGALRELTRELNGG 180 Query 181 VVTRYVDNNFCGPDGYPLECIKDFLARAGKSMCTLSEQLDYIESKRGVYCCREHEHEIVW 240 VVTRYVDNNFCGPDGYPLECIKDFLARAGKSMCTLSEQLDYIESKRGVYCCREHEHEIVW Sbjct 181 VVTRYVDNNFCGPDGYPLECIKDFLARAGKSMCTLSEQLDYIESKRGVYCCREHEHEIVW 240 Query 241 FTERSEKSYEHQTPFEIKSAKKFDTFKGECPKFVFPLNSKVKVIQPRVEKKKTEGFMGRI 300 FTERSEKSYEHQTPFEIKSAKKFDTFKGECPKFVFPLNSKVKVIQPRVEKKKTEGFMGRI Sbjct 241 FTERSEKSYEHQTPFEIKSAKKFDTFKGECPKFVFPLNSKVKVIQPRVEKKKTEGFMGRI 300 Query 301 RSVYPVATPQECNDMHLSTLMKCNHCDEVSWQTCDFLKATCEQCGTENLVCEGPTTCGYL 360 RSVYPVATPQECNDMHLSTLMKCNHCDEVSWQTCDFLKATCEQCGTENLVCEGPTTCGYL Sbjct 301 RSVYPVATPQECNDMHLSTLMKCNHCDEVSWQTCDFLKATCEQCGTENLVCEGPTTCGYL 360 Query 361 PTNAVVKMPCPACQDPEVGPEHSVADYHNHSNIETRLRKGGRTKCFGGCVFSYVGCYNKR 420 PTNAVVKMPCPACQDPEVGPEHSVADYHNHSNIETRLRKGGRTKCFGGCVFSYVGCYNKR Sbjct 361 PTNAVVKMPCPACQDPEVGPEHSVADYHNHSNIETRLRKGGRTKCFGGCVFSYVGCYNKR 420 Query 421 AYWVPRASANIGANHTGITGENVETLNEDLLEILNRERVNINIVGDFRFNEEVAIILASF 480 AYWVPRASANIGANHTGITGENVETLNEDLLEILNRERVNINIVGDFRFNEEVAIILASF Sbjct 421 AYWVPRASANIGANHTGITGENVETLNEDLLEILNRERVNINIVGDFRFNEEVAIILASF 480 Query 481 SASPSAFIETVKGLDYKSFKVIVESCGNYKVTNGKPVTGAWNIGQQRSILTPLCGFPSQA 540 SASPSAFIETVKGLDYKSFKVIVESCGNYKVTNGKPVTGAWNIGQQRSILTPLCGFPSQA Sbjct 481 SASPSAFIETVKGLDYKSFKVIVESCGNYKVTNGKPVTGAWNIGQQRSILTPLCGFPSQA 540 Query 541 AGVIRSIFSRTLDAANHSILDLQRAAVTTLDGISEQSLRLVDAMVYTSDLLTNSVVVMAY 600 AGVIRSIFSRTLDAANHSILDLQRAAVTTLDGISEQSLRLVDAMVYTSDLLTNSVVVMAY Sbjct 541 AGVIRSIFSRTLDAANHSILDLQRAAVTTLDGISEQSLRLVDAMVYTSDLLTNSVVVMAY 600 Query 601 VTGGLVQQTMQWLSNMLGTAVDKLKPVFTWVEAKLSAGVEFLRDAWEILKFLITGVFDVI 660 VTGGLVQQTMQWLSNMLGTAVDKLKPVFTWVEAKLSAGVEFLRDAWEILKFLITGVFDVI Sbjct 601 VTGGLVQQTMQWLSNMLGTAVDKLKPVFTWVEAKLSAGVEFLRDAWEILKFLITGVFDVI 660 Query 661 KGQIQVATDNIKECVKIFLGVVNKALEMCLDQVTIAGTKLRALNLGEVFIAQSRGLYRQC 720 KGQIQVATDNIKECVKIFLGVVNKALEMCLDQVTIAGTKLRALNLGEVFIAQSRGLYRQC Sbjct 661 KGQIQVATDNIKECVKIFLGVVNKALEMCLDQVTIAGTKLRALNLGEVFIAQSRGLYRQC 720 Query 721 IRGKEQLQLLMPLKAPKEVTFLEGDAHDTVLTSEEVVLKSGELEALETPIDSFTSGAVVG 780 IRGKEQLQLLMPLKAPKEVTFLEGDAHDTVLTSEEVVLKSGELEALETPIDSFTSGAVVG Sbjct 721 IRGKEQLQLLMPLKAPKEVTFLEGDAHDTVLTSEEVVLKSGELEALETPIDSFTSGAVVG 780 Query 781 TPVCINGLMLLELENKEQYCALSPGLLATNNVFRLKGGAPVKGVTFGEDTVLEVQGYKNV 840 TPVCINGLMLLELENKEQYCALSPGLLATNNVFRLKGGAPVKGVTFGEDTVLEVQGYKNV Sbjct 781 TPVCINGLMLLELENKEQYCALSPGLLATNNVFRLKGGAPVKGVTFGEDTVLEVQGYKNV 840 Query 841 KITFELDVRVDKVLNEKCSVYTVESGTEVTEFACVVAEAVVKTLQPVSDLLTPMGIDLDE 900 KITFELDVRVDKVLNEKCSVYTVESGTEVTEFACVVAEAVVKTLQPVSDLLTPMGIDLDE Sbjct 841 KITFELDVRVDKVLNEKCSVYTVESGTEVTEFACVVAEAVVKTLQPVSDLLTPMGIDLDE 900 Query 901 WSVATFYLFDDAGEEKLSSRMYCSFYPPDEEEDCEECEDEEETCEHEYGTEDDYKGLPLE 960 WSVATFYLFDDAGEEKLSSRMYCSFYPPDEEEDCEECEDEEETCEHEYGTEDDYKGLPLE Sbjct 901 WSVATFYLFDDAGEEKLSSRMYCSFYPPDEEEDCEECEDEEETCEHEYGTEDDYKGLPLE 960 Query 961 FGASTETPHVEEEEEEEDWLDDAIEAEPEPEPLPEEPVNQFVGYLKLTDNVAIKCIDIVK 1020 FGASTETPHVEEEEEEEDWLDDAIEAEPEPEPLPEEPVNQFVGYLKLTDNVAIKCIDIVK Sbjct 961 FGASTETPHVEEEEEEEDWLDDAIEAEPEPEPLPEEPVNQFVGYLKLTDNVAIKCIDIVK 1020 Query 1021 EAQSAKPTVIVNAANTHLKHGGGVAGALNKATNGAMQNESDEYIRQNGPLTVGGSCLLSG 1080 EAQSAKPTVIVNAANTHLKHGGGVAGALNKATNGAMQNESDEYIRQNGPLTVGGSCLLSG Sbjct 1021 EAQSAKPTVIVNAANTHLKHGGGVAGALNKATNGAMQNESDEYIRQNGPLTVGGSCLLSG 1080 Query 1081 HNLAEKCLHVVGPNLNAGEDVQLLKRAYENFNSQDVLLAPLLSAGIFGAKPLQSLKMCVE 1140 HNLAEKCLHVVGPNLNAGEDVQLLKRAYENFNSQDVLLAPLLSAGIFGAKPLQSLKMCVE Sbjct 1081 HNLAEKCLHVVGPNLNAGEDVQLLKRAYENFNSQDVLLAPLLSAGIFGAKPLQSLKMCVE 1140 Query 1141 IVRTQVYLAVNDKSLYDQIVLDYLDSLKPKVESPNKEEEPKLEEPKAVQPVAEKPVDVKP 1200 IVRTQVYLAVNDKSLYDQIVLDYLDSLKPKVESPNKEEEPKLEEPKAVQPVAEKPVDVKP Sbjct 1141 IVRTQVYLAVNDKSLYDQIVLDYLDSLKPKVESPNKEEEPKLEEPKAVQPVAEKPVDVKP 1200 Query 1201 KIKACIDEVTTTLEETKFLTNKLLLFADINGKLYQDSQNMLRGEDMSFLEKDAPYIVGDV 1260 KIKACIDEVTTTLEETKFLTNKLLLFADINGKLYQDSQNMLRGEDMSFLEKDAPYIVGDV Sbjct 1201 KIKACIDEVTTTLEETKFLTNKLLLFADINGKLYQDSQNMLRGEDMSFLEKDAPYIVGDV 1260 Query 1261 ITSGDITCVIIPAKKSGGTTEMLARALKEVPVAEYITTYPGQGCAGYTLEEAKTALKKCK 1320 ITSGDITCVIIPAKKSGGTTEMLARALKEVPVAEYITTYPGQGCAGYTLEEAKTALKKCK Sbjct 1261 ITSGDITCVIIPAKKSGGTTEMLARALKEVPVAEYITTYPGQGCAGYTLEEAKTALKKCK 1320 Query 1321 SAFYVLPSETPNEKEEVLGTVSWNLREMLAHAEETRKLMPICLDVRAIMATIQRKYKGIK 1380 SAFYVLPSETPNEKEEVLGTVSWNLREMLAHAEETRKLMPICLDVRAIMATIQRKYKGIK Sbjct 1321 SAFYVLPSETPNEKEEVLGTVSWNLREMLAHAEETRKLMPICLDVRAIMATIQRKYKGIK 1380 Query 1381 VQEGIVDYGVRFFFYTSKEPVASIITKLNSLNEPLVTMPIGYVTHGLNLEEAARCMRSLK 1440 VQEGIVDYGVRFFFYTSKEPVASIITKLNSLNEPLVTMPIGYVTHGLNLEEAARCMRSLK Sbjct 1381 VQEGIVDYGVRFFFYTSKEPVASIITKLNSLNEPLVTMPIGYVTHGLNLEEAARCMRSLK 1440 Query 1441 APAVVSVSSPDAVTAYNGYLTSSSKTPEEYFVETTSLAGSYRDWSYSGQRTELGVEFLKR 1500 APAVVSVSSPDAVTAYNGYLTSSSKTPEEYFVETTSLAGSYRDWSYSGQRTELGVEFLKR Sbjct 1441 APAVVSVSSPDAVTAYNGYLTSSSKTPEEYFVETTSLAGSYRDWSYSGQRTELGVEFLKR 1500 Query 1501 GDKIVYHTTGSPIEFHLDGEVLPLDKLKSLLSLREVKTIKVFTTVDNTNLHTHIVDMSMT 1560 GDKIVYHTTGSPIEFHLDGEVLPLDKLKSLLSLREVKTIKVFTTVDNTNLHTHIVDMSMT Sbjct 1501 GDKIVYHTTGSPIEFHLDGEVLPLDKLKSLLSLREVKTIKVFTTVDNTNLHTHIVDMSMT 1560 Query 1561 YGQQFGPTYLDGADVTKIKPHVNHEGKTFFVLPSDDTLRSEAFEYYHTIDESFLGRYMSA 1620 YGQQFGPTYLDGADVTKIKPHVNHEGKTFFVLPSDDTLRSEAFEYYHTIDESFLGRYMSA Sbjct 1561 YGQQFGPTYLDGADVTKIKPHVNHEGKTFFVLPSDDTLRSEAFEYYHTIDESFLGRYMSA 1620 Query 1621 LNHTKKWKFPQVGGLTSIKWADNNCYLSSVLLALQQVEVKFNAPALQEAYYRARAGDAAN 1680 LNHTKKWKFPQVGGLTSIKWADNNCYLSSVLLALQQVEVKFNAPALQEAYYRARAGDAAN Sbjct 1621 LNHTKKWKFPQVGGLTSIKWADNNCYLSSVLLALQQVEVKFNAPALQEAYYRARAGDAAN 1680 Query 1681 FCALILAYSNKTVGELGDVRETMTHLLQHANLESAKRVLNVVCKHCGQKTTTLKGVEAVM 1740 FCALILAYSNKTVGELGDVRETMTHLLQHANLESAKRVLNVVCKHCGQKTTTLKGVEAVM Sbjct 1681 FCALILAYSNKTVGELGDVRETMTHLLQHANLESAKRVLNVVCKHCGQKTTTLKGVEAVM 1740 Query 1741 YMGTLSYDELKTGVSIPCVCGRNATQYLVQQESSFVMMSAPPAEYKLQQGAFLCANEYTG 1800 YMGTLSYDELKTGVSIPCVCGRNATQYLVQQESSFVMMSAPPAEYKLQQGAFLCANEYTG Sbjct 1741 YMGTLSYDELKTGVSIPCVCGRNATQYLVQQESSFVMMSAPPAEYKLQQGAFLCANEYTG 1800 Query 1801 NYQCGHYTHITAKETLYRVDGAHLTKMSEYKGPVTDVFYKETSYTTAIKPVSYKLDGVTY 1860 NYQCGHYTHITAKETLYRVDGAHLTKMSEYKGPVTDVFYKETSYTTAIKPVSYKLDGVTY Sbjct 1801 NYQCGHYTHITAKETLYRVDGAHLTKMSEYKGPVTDVFYKETSYTTAIKPVSYKLDGVTY 1860 Query 1861 TEIEPKLDGYYKKGNAYYTEQPIDLVPTQPMPNASFDNFKLTCSNTKFADDLNQMTGFKK 1920 TEIEPKLDGYYKKGNAYYTEQPIDLVPTQPMPNASFDNFKLTCSNTKFADDLNQMTGFKK Sbjct 1861 TEIEPKLDGYYKKGNAYYTEQPIDLVPTQPMPNASFDNFKLTCSNTKFADDLNQMTGFKK 1920 Query 1921 PASRELTVTFFPDLNGDVVAIDYRHYSTSFKKGAKLVHKPILWHINQTTNKTTYKPNIWC 1980 PASRELTVTFFPDLNGDVVAIDYRHYSTSFKKGAKLVHKPILWHINQTTNKTTYKPNIWC Sbjct 1921 PASRELTVTFFPDLNGDVVAIDYRHYSTSFKKGAKLVHKPILWHINQTTNKTTYKPNIWC 1980 Query 1981 LRCLWSTKPVDTSNSFEVLVVEDTQGMDNLACESQTTTSEEVVENPTVQKEIIECDVKTT 2040 LRCLWSTKPVDTSNSFEVLVVEDTQGMDNLACESQTTTSEEVVENPTVQKEIIECDVKTT Sbjct 1981 LRCLWSTKPVDTSNSFEVLVVEDTQGMDNLACESQTTTSEEVVENPTVQKEIIECDVKTT 2040 Query 2041 EVVGNVILKPSEEGVKVTQELGHEDLMAAYVEETSITIKKPNELSLALGLKTLATHGAAA 2100 EVVGNVILKPSEEGVKVTQELGHEDLMAAYVEETSITIKKPNELSLALGLKTLATHGAAA Sbjct 2041 EVVGNVILKPSEEGVKVTQELGHEDLMAAYVEETSITIKKPNELSLALGLKTLATHGAAA 2100 Query 2101 INSVPWSKILAYVKPFLGQTAVITSNCIKKCVQRVFSNYMPYVITLLFQLCTFTKSTNSR 2160 INSVPWSKILAYVKPFLGQTAVITSNCIKKCVQRVFSNYMPYVITLLFQLCTFTKSTNSR Sbjct 2101 INSVPWSKILAYVKPFLGQTAVITSNCIKKCVQRVFSNYMPYVITLLFQLCTFTKSTNSR 2160 Query 2161 IKASLPTTIAKNSVKSVAKLCLDVCINYVKSPKFSKLFTIVMWLLLLSICLGSLTYVTAV 2220 IKASLPTTIAKNSVKSVAKLCLDVCINYVKSPKFSKLFTIVMWLLLLSICLGSLTYVTAV Sbjct 2161 IKASLPTTIAKNSVKSVAKLCLDVCINYVKSPKFSKLFTIVMWLLLLSICLGSLTYVTAV 2220 Query 2221 LGVCLSSLGVPSYCDGVRELYINSSNVTTMDFCQGYFPCSVCLSGLDSLDSYPALETIQV 2280 LGVCLSSLGVPSYCDGVRELYINSSNVTTMDFCQGYFPCSVCLSGLDSLDSYPALETIQV Sbjct 2221 LGVCLSSLGVPSYCDGVRELYINSSNVTTMDFCQGYFPCSVCLSGLDSLDSYPALETIQV 2280 Query 2281 TISSYKLDLTFLGLAAEWLLAYMLFTKFFYLLGLSAIMQAFFGYFASHFISNSWLMWFII 2340 TISSYKLDLTFLGLAAEWLLAYMLFTKFFYLLGLSAIMQAFFGYFASHFISNSWLMWFII Sbjct 2281 TISSYKLDLTFLGLAAEWLLAYMLFTKFFYLLGLSAIMQAFFGYFASHFISNSWLMWFII 2340 Query 2341 SIVQMAPVSAMVRMYIFFASFYYVWKSYVHIMDGCTSSTCMMCYKRNRATRVECTTIVNG 2400 SIVQMAPVSAMVRMYIFFASFYYVWKSYVHIMDGCTSSTCMMCYKRNRATRVECTTIVNG Sbjct 2341 SIVQMAPVSAMVRMYIFFASFYYVWKSYVHIMDGCTSSTCMMCYKRNRATRVECTTIVNG 2400 Query 2401 VKRSFYVYANGGRGFCKAHNWNCLNCDTFCAGSTFISDEVARDLSLQFKRPINPTDQSAY 2460 VKRSFYVYANGGRGFCKAHNWNCLNCDTFCAGSTFISDEVARDLSLQFKRPINPTDQSAY Sbjct 2401 VKRSFYVYANGGRGFCKAHNWNCLNCDTFCAGSTFISDEVARDLSLQFKRPINPTDQSAY 2460 Query 2461 VVDSVTVKNGALHLYFDKAGQKTYERHPLSHFVNLDNLRANNTKGSLPINVIVFDGKSKC 2520 VVDSVTVKNGALHLYFDKAGQKTYERHPLSHFVNLDNLRANNTKGSLPINVIVFDGKSKC Sbjct 2461 VVDSVTVKNGALHLYFDKAGQKTYERHPLSHFVNLDNLRANNTKGSLPINVIVFDGKSKC 2520 Query 2521 EESAAKSASVYYSQLMCQPILLLDQALVSDVGDSTEVSVKMFDAYVDTFSATFSVPMEKL 2580 EESAAKSASVYYSQLMCQPILLLDQALVSDVGDSTEVSVKMFDAYVDTFSATFSVPMEKL Sbjct 2521 EESAAKSASVYYSQLMCQPILLLDQALVSDVGDSTEVSVKMFDAYVDTFSATFSVPMEKL 2580 Query 2581 KALVATAHSELAKGVALDGVLSTFVSAARQGVVDTDVDTKDVIECLKLSHHSDIEVTGDS 2640 KALVATAHSELAKGVALDGVLSTFVSAARQGVVDTDVDTKDVIECLKLSHHSDIEVTGDS Sbjct 2581 KALVATAHSELAKGVALDGVLSTFVSAARQGVVDTDVDTKDVIECLKLSHHSDIEVTGDS 2640 Query 2641 CNNFMLTYNKVENMTPRDLGACIDCNARHINAQVAKSHNVSLVWNVKDYMSLSEQLRKQI 2700 CNNFMLTYNKVENMTPRDLGACIDCNARHINAQVAKSHNVSLVWNVKDYMSLSEQLRKQI Sbjct 2641 CNNFMLTYNKVENMTPRDLGACIDCNARHINAQVAKSHNVSLVWNVKDYMSLSEQLRKQI 2700 Query 2701 RSAAKKNNIPFRLTCATTRQVVNVITTKISLKGGKVVSTWFKLLLKVTLLCVLAALFCYV 2760 RSAAKKNNIPFRLTCATTRQVVNVITTKISLKGGKVVSTWFKLLLKVTLLCVLAALFCYV Sbjct 2701 RSAAKKNNIPFRLTCATTRQVVNVITTKISLKGGKVVSTWFKLLLKVTLLCVLAALFCYV 2760 Query 2761 IMPVHSLSVHDGYTNEIIGYKAIQDGVTRDIVSTDDCFANKHAGFDSWFSQRGGSYRNDK 2820 IMPVHSLSVHDGYTNEIIGYKAIQDGVTRDIVSTDDCFANKHAGFDSWFSQRGGSYRNDK Sbjct 2761 IMPVHSLSVHDGYTNEIIGYKAIQDGVTRDIVSTDDCFANKHAGFDSWFSQRGGSYRNDK 2820 Query 2821 NCPVVAAIITREIGFIVPGLPGTVLRALNGDFLHFLPRVFSAVGNICYTPSKLIEYSDFA 2880 NCPVVAAIITREIGFIVPGLPGTVLRALNGDFLHFLPRVFSAVGNICYTPSKLIEYSDFA Sbjct 2821 NCPVVAAIITREIGFIVPGLPGTVLRALNGDFLHFLPRVFSAVGNICYTPSKLIEYSDFA 2880 Query 2881 TSACVLAAECTIFKDAMGKPVPYCYDTNLLEGSISYSELRPDTRYVLMDGSIIQFPNTYL 2940 TSACVLAAECTIFKDAMGKPVPYCYDTNLLEGSISYSELRPDTRYVLMDGSIIQFPNTYL Sbjct 2881 TSACVLAAECTIFKDAMGKPVPYCYDTNLLEGSISYSELRPDTRYVLMDGSIIQFPNTYL 2940 Query 2941 EGSVRVVTTFDAEYCRHGTCERSEVGVCLSTSGRWVLNNEHYRALPGVFCGVDAMNLIAN 3000 EGSVRVVTTFDAEYCRHGTCERSEVGVCLSTSGRWVLNNEHYRALPGVFCGVDAMNLIAN Sbjct 2941 EGSVRVVTTFDAEYCRHGTCERSEVGVCLSTSGRWVLNNEHYRALPGVFCGVDAMNLIAN 3000 Query 3001 IFTPLVQPVGALDVSASVVAGGIIAILVTCAAYYFMKFRRAFGEYNHVVAANALLFLMSF 3060 IFTPLVQPVGALDVSASVVAGGIIAILVTCAAYYFMKFRRAFGEYNHVVAANALLFLMSF Sbjct 3001 IFTPLVQPVGALDVSASVVAGGIIAILVTCAAYYFMKFRRAFGEYNHVVAANALLFLMSF 3060 Query 3061 TILCLAPAYSFLPGVYSIFYLYLTFYFTNDVSFLAHLQWFAMFSPIVPFWITAIYVFCIS 3120 TILCLAPAYSFLPGVYSIFYLYLTFYFTNDVSFLAHLQWFAMFSPIVPFWITAIYVFCIS Sbjct 3061 TILCLAPAYSFLPGVYSIFYLYLTFYFTNDVSFLAHLQWFAMFSPIVPFWITAIYVFCIS 3120 Query 3121 LKHFHWFFSNYLKKRVMFNGVTFSTFEEAALCTFLLNKEMYLRLRSETLLPLTQYNRYLA 3180 LKHFHWFFSNYLKKRVMFNGVTFSTFEEAALCTFLLNKEMYLRLRSETLLPLTQYNRYLA Sbjct 3121 LKHFHWFFSNYLKKRVMFNGVTFSTFEEAALCTFLLNKEMYLRLRSETLLPLTQYNRYLA 3180 Query 3181 LYNKYKYFSGALDTTSYREAACCHLAKALNDFSNSGADVLYQPPQTSITSAVLQSGFRKM 3240 LYNKYKYFSGALDTTSYREAACCHLAKALNDFSNSGADVLYQPPQTSITSAVLQSGFRKM Sbjct 3181 LYNKYKYFSGALDTTSYREAACCHLAKALNDFSNSGADVLYQPPQTSITSAVLQSGFRKM 3240 Query 3241 AFPSGKVEGCMVQVTCGTTTLNGLWLDDTVYCPRHVVCTAEDMLNPNYDDLLIRKSNHSF 3300 AFPSGKVEGCMVQVTCGTTTLNGLWLDDTVYCPRHVVCTAEDMLNPNYDDLLIRKSNHSF Sbjct 3241 AFPSGKVEGCMVQVTCGTTTLNGLWLDDTVYCPRHVVCTAEDMLNPNYDDLLIRKSNHSF 3300 Query 3301 LVQAGNVQLRVIGHSMQNCLLRLKVDTSNPKTPKYKFVRIQPGQTFSVLACYNGSPSGVY 3360 LVQAGNVQLRVIGHSMQNCLLRLKVDTSNPKTPKYKFVRIQPGQTFSVLACYNGSPSGVY Sbjct 3301 LVQAGNVQLRVIGHSMQNCLLRLKVDTSNPKTPKYKFVRIQPGQTFSVLACYNGSPSGVY 3360 Query 3361 QCAMRPNHTIKGSFLNGSCGSVGFNIDYDCVSFCYMHHMELPTGVHAGTDLEGKFYGPFV 3420 QCAMRPNHTIKGSFLNGSCGSVGFNIDYDCVSFCYMHHMELPTGVHAGTDLEGKFYGPFV Sbjct 3361 QCAMRPNHTIKGSFLNGSCGSVGFNIDYDCVSFCYMHHMELPTGVHAGTDLEGKFYGPFV 3420 Query 3421 DRQTAQAAGTDTTITLNVLAWLYAAVINGDRWFLNRFTTTLNDFNLVAMKYNYEPLTQDH 3480 DRQTAQAAGTDTTITLNVLAWLYAAVINGDRWFLNRFTTTLNDFNLVAMKYNYEPLTQDH Sbjct 3421 DRQTAQAAGTDTTITLNVLAWLYAAVINGDRWFLNRFTTTLNDFNLVAMKYNYEPLTQDH 3480 Query 3481 VDILGPLSAQTGIAVLDMCAALKELLQNGMNGRTILGSTILEDEFTPFDVVRQCSGVTFQ 3540 VDILGPLSAQTGIAVLDMCAALKELLQNGMNGRTILGSTILEDEFTPFDVVRQCSGVTFQ Sbjct 3481 VDILGPLSAQTGIAVLDMCAALKELLQNGMNGRTILGSTILEDEFTPFDVVRQCSGVTFQ 3540 Query 3541 GKFKKIVKGTHHWMLLTFLTSLLILVQSTQWSLFFFVYENAFLPFALGIMAVAACAMLLV 3600 GKFKKIVKGTHHWMLLTFLTSLLILVQSTQWSLFFFVYENAFLPFALGIMAVAACAMLLV Sbjct 3541 GKFKKIVKGTHHWMLLTFLTSLLILVQSTQWSLFFFVYENAFLPFALGIMAVAACAMLLV 3600 Query 3601 KHKHAFLCLFLLPSLATVAYFNMVYMPASWVMRIMTWLELADTSLSGYRLKDCVMYASAL 3660 KHKHAFLCLFLLPSLATVAYFNMVYMPASWVMRIMTWLELADTSLSGYRLKDCVMYASAL Sbjct 3601 KHKHAFLCLFLLPSLATVAYFNMVYMPASWVMRIMTWLELADTSLSGYRLKDCVMYASAL 3660 Query 3661 VLLILMTARTVYDDAARRVWTLMNVITLVYKVYYGNSLDQAISMWALVISVTSNYSGVVT 3720 VLLILMTARTVYDDAARRVWTLMNVITLVYKVYYGNSLDQAISMWALVISVTSNYSGVVT Sbjct 3661 VLLILMTARTVYDDAARRVWTLMNVITLVYKVYYGNSLDQAISMWALVISVTSNYSGVVT 3720 Query 3721 TIMFLARAIVFVCVEYYPLLFITGNTLQCIMLVYCFLGYCCCCYFGLFCLLNRYFRLTLG 3780 TIMFLARAIVFVCVEYYPLLFITGNTLQCIMLVYCFLGYCCCCYFGLFCLLNRYFRLTLG Sbjct 3721 TIMFLARAIVFVCVEYYPLLFITGNTLQCIMLVYCFLGYCCCCYFGLFCLLNRYFRLTLG 3780 Query 3781 VYDYLVSTQEFRYMNSQGLLPPKSSIDAFKLNIKLLGIGGKPCIKVATVQSKMSDVKCTS 3840 VYDYLVSTQEFRYMNSQGLLPPKSSIDAFKLNIKLLGIGGKPCIKVATVQSKMSDVKCTS Sbjct 3781 VYDYLVSTQEFRYMNSQGLLPPKSSIDAFKLNIKLLGIGGKPCIKVATVQSKMSDVKCTS 3840 Query 3841 VVLLSVLQQLRVESSSKLWAQCVQLHNDILLAKDTTEAFEKMVSLLSVLLSMQGAVDINK 3900 VVLLSVLQQLRVESSSKLWAQCVQLHNDILLAKDTTEAFEKMVSLLSVLLSMQGAVDINK Sbjct 3841 VVLLSVLQQLRVESSSKLWAQCVQLHNDILLAKDTTEAFEKMVSLLSVLLSMQGAVDINK 3900 Query 3901 LCEEMLDNRATLQAIASEFSSLPSYAAYATAQEAYEQAVSNGDSEVVLKKLKKSLNVAKS 3960 LCEEMLDNRATLQAIASEFSSLPSYAAYATAQEAYEQAVSNGDSEVVLKKLKKSLNVAKS Sbjct 3901 LCEEMLDNRATLQAIASEFSSLPSYAAYATAQEAYEQAVSNGDSEVVLKKLKKSLNVAKS 3960 Query 3961 EFDHDAAMQRKLEKMADQAMTQMYKQARSEDKRAKVTSAMQTMLFTMLRKLDNDALNNII 4020 EFDHDAAMQRKLEKMADQAMTQMYKQARSEDKRAKVTSAMQTMLFTMLRKLDNDALNNII Sbjct 3961 EFDHDAAMQRKLEKMADQAMTQMYKQARSEDKRAKVTSAMQTMLFTMLRKLDNDALNNII 4020 Query 4021 NNARDGCVPLNIIPLTTAAKLMVVVPDYGTYKNTCDGNTFTYASALWEIQQVVDADSKIV 4080 NNARDGCVPLNIIPLTTAAKLMVVVPDYGTYKNTCDGNTFTYASALWEIQQVVDADSKIV Sbjct 4021 NNARDGCVPLNIIPLTTAAKLMVVVPDYGTYKNTCDGNTFTYASALWEIQQVVDADSKIV 4080 Query 4081 QLSEINMDNSPNLAWPLIVTALRANSAVKLQNNELSPVALRQMSCAAGTTQTACTDDNAL 4140 QLSEINMDNSPNLAWPLIVTALRANSAVKLQNNELSPVALRQMSCAAGTTQTACTDDNAL Sbjct 4081 QLSEINMDNSPNLAWPLIVTALRANSAVKLQNNELSPVALRQMSCAAGTTQTACTDDNAL 4140 Query 4141 AYYNNAKGGRFVLALLSDHQDLKWARFPKSDGTGTIYTELEPPCRFVTDTPKGPKVKYLY 4200 AYYNNAKGGRFVLALLSDHQDLKWARFPKSDGTGTIYTELEPPCRFVTDTPKGPKVKYLY Sbjct 4141 AYYNNAKGGRFVLALLSDHQDLKWARFPKSDGTGTIYTELEPPCRFVTDTPKGPKVKYLY 4200 Query 4201 FIKGLNNLNRGMVLGSLAATVRLQAGNATEVPANSTVLSFCAFAVDPAKAYKDYLASGGQ 4260 FIKGLNNLNRGMVLGSLAATVRLQAGNATEVPANSTVLSFCAFAVDPAKAYKDYLASGGQ Sbjct 4201 FIKGLNNLNRGMVLGSLAATVRLQAGNATEVPANSTVLSFCAFAVDPAKAYKDYLASGGQ 4260 Query 4261 PITNCVKMLCTHTGTGQAITVTPEANMDQESFGGASCCLYCRCHIDHPNPKGFCDLKGKY 4320 PITNCVKMLCTHTGTGQAITVTPEANMDQESFGGASCCLYCRCHIDHPNPKGFCDLKGKY Sbjct 4261 PITNCVKMLCTHTGTGQAITVTPEANMDQESFGGASCCLYCRCHIDHPNPKGFCDLKGKY 4320 Query 4321 VQIPTTCANDPVGFTLRNTVCTVCGMWKGYGCSCDQLREPMMQSADASTFLNGFAV 4376 VQIPTTCANDPVGFTLRNTVCTVCGMWKGYGCSCDQLREPMMQSADASTFLNGFAV Sbjct 4321 VQIPTTCANDPVGFTLRNTVCTVCGMWKGYGCSCDQLREPMMQSADASTFLNGFAV 4376 >RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Host translation inhibitor nsp1; Short=nsp1; AltName: Full=Leader protein; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p65 homolog; Contains: RecName: Full=Papain-like proteinase nsp3; Short=PL-PRO; AltName: Full=Non-structural protein 3; Short=nsp3; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; Contains: RecName: Full=3C-like proteinase nsp5; Short=3CL-PRO; Short=3CLp; AltName: Full=nsp5; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; Contains: RecName: Full=Viral protein genome-linked nsp9; AltName: Full=Non-structural protein 9; Short=nsp9; AltName: Full=RNA-capping enzyme subunit nsp9; AltName: Full=p12; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; Contains: RecName: Full=RNA-directed RNA polymerase nsp12; Short=Pol; Short=RdRp; AltName: Full=nsp12; Contains: RecName: Full=Helicase nsp13; Short=Hel; AltName: Full=nsp13; Contains: RecName: Full=Guanine-N7 methyltransferase nsp14; Short=ExoN; AltName: Full=nsp14; Contains: RecName: Full=Uridylate-specific endoribonuclease nsp15; AltName: Full=NendoU; AltName: Full=nsp15; Contains: RecName: Full=2'-O-methyltransferase nsp16; AltName: Full=nsp16 [Bat SARS coronavirus HKU3] Sequence ID: P0C6W2.1 Length: 7067 Range 1: 1 to 4372 Score:9088 bits(23582), Expect:0.0, Method:Compositional matrix adjust., Identities:4372/4372(100%), Positives:4372/4372(100%), Gaps:0/4372(0%) Query 1 MESLVLGVNEKTHVQLSLPVLQVRDVLVRGFGDSVEEALSEAREHLKNGTCGLVELEKGV 60 MESLVLGVNEKTHVQLSLPVLQVRDVLVRGFGDSVEEALSEAREHLKNGTCGLVELEKGV Sbjct 1 MESLVLGVNEKTHVQLSLPVLQVRDVLVRGFGDSVEEALSEAREHLKNGTCGLVELEKGV 60 Query 61 LPQLEQPYVFIKRSDALSTNHGHKVVELVAELDGIQFGRSGITLGVLVPHVGETPIAYRN 120 LPQLEQPYVFIKRSDALSTNHGHKVVELVAELDGIQFGRSGITLGVLVPHVGETPIAYRN Sbjct 61 LPQLEQPYVFIKRSDALSTNHGHKVVELVAELDGIQFGRSGITLGVLVPHVGETPIAYRN 120 Query 121 VLLRKNGNKGAGGHSFGIDLKSYDLGDELGTDPIEDYEQNWNTKHGSGALRELTRELNGG 180 VLLRKNGNKGAGGHSFGIDLKSYDLGDELGTDPIEDYEQNWNTKHGSGALRELTRELNGG Sbjct 121 VLLRKNGNKGAGGHSFGIDLKSYDLGDELGTDPIEDYEQNWNTKHGSGALRELTRELNGG 180 Query 181 VVTRYVDNNFCGPDGYPLECIKDFLARAGKSMCTLSEQLDYIESKRGVYCCREHEHEIVW 240 VVTRYVDNNFCGPDGYPLECIKDFLARAGKSMCTLSEQLDYIESKRGVYCCREHEHEIVW Sbjct 181 VVTRYVDNNFCGPDGYPLECIKDFLARAGKSMCTLSEQLDYIESKRGVYCCREHEHEIVW 240 Query 241 FTERSEKSYEHQTPFEIKSAKKFDTFKGECPKFVFPLNSKVKVIQPRVEKKKTEGFMGRI 300 FTERSEKSYEHQTPFEIKSAKKFDTFKGECPKFVFPLNSKVKVIQPRVEKKKTEGFMGRI Sbjct 241 FTERSEKSYEHQTPFEIKSAKKFDTFKGECPKFVFPLNSKVKVIQPRVEKKKTEGFMGRI 300 Query 301 RSVYPVATPQECNDMHLSTLMKCNHCDEVSWQTCDFLKATCEQCGTENLVCEGPTTCGYL 360 RSVYPVATPQECNDMHLSTLMKCNHCDEVSWQTCDFLKATCEQCGTENLVCEGPTTCGYL Sbjct 301 RSVYPVATPQECNDMHLSTLMKCNHCDEVSWQTCDFLKATCEQCGTENLVCEGPTTCGYL 360 Query 361 PTNAVVKMPCPACQDPEVGPEHSVADYHNHSNIETRLRKGGRTKCFGGCVFSYVGCYNKR 420 PTNAVVKMPCPACQDPEVGPEHSVADYHNHSNIETRLRKGGRTKCFGGCVFSYVGCYNKR Sbjct 361 PTNAVVKMPCPACQDPEVGPEHSVADYHNHSNIETRLRKGGRTKCFGGCVFSYVGCYNKR 420 Query 421 AYWVPRASANIGANHTGITGENVETLNEDLLEILNRERVNINIVGDFRFNEEVAIILASF 480 AYWVPRASANIGANHTGITGENVETLNEDLLEILNRERVNINIVGDFRFNEEVAIILASF Sbjct 421 AYWVPRASANIGANHTGITGENVETLNEDLLEILNRERVNINIVGDFRFNEEVAIILASF 480 Query 481 SASPSAFIETVKGLDYKSFKVIVESCGNYKVTNGKPVTGAWNIGQQRSILTPLCGFPSQA 540 SASPSAFIETVKGLDYKSFKVIVESCGNYKVTNGKPVTGAWNIGQQRSILTPLCGFPSQA Sbjct 481 SASPSAFIETVKGLDYKSFKVIVESCGNYKVTNGKPVTGAWNIGQQRSILTPLCGFPSQA 540 Query 541 AGVIRSIFSRTLDAANHSILDLQRAAVTTLDGISEQSLRLVDAMVYTSDLLTNSVVVMAY 600 AGVIRSIFSRTLDAANHSILDLQRAAVTTLDGISEQSLRLVDAMVYTSDLLTNSVVVMAY Sbjct 541 AGVIRSIFSRTLDAANHSILDLQRAAVTTLDGISEQSLRLVDAMVYTSDLLTNSVVVMAY 600 Query 601 VTGGLVQQTMQWLSNMLGTAVDKLKPVFTWVEAKLSAGVEFLRDAWEILKFLITGVFDVI 660 VTGGLVQQTMQWLSNMLGTAVDKLKPVFTWVEAKLSAGVEFLRDAWEILKFLITGVFDVI Sbjct 601 VTGGLVQQTMQWLSNMLGTAVDKLKPVFTWVEAKLSAGVEFLRDAWEILKFLITGVFDVI 660 Query 661 KGQIQVATDNIKECVKIFLGVVNKALEMCLDQVTIAGTKLRALNLGEVFIAQSRGLYRQC 720 KGQIQVATDNIKECVKIFLGVVNKALEMCLDQVTIAGTKLRALNLGEVFIAQSRGLYRQC Sbjct 661 KGQIQVATDNIKECVKIFLGVVNKALEMCLDQVTIAGTKLRALNLGEVFIAQSRGLYRQC 720 Query 721 IRGKEQLQLLMPLKAPKEVTFLEGDAHDTVLTSEEVVLKSGELEALETPIDSFTSGAVVG 780 IRGKEQLQLLMPLKAPKEVTFLEGDAHDTVLTSEEVVLKSGELEALETPIDSFTSGAVVG Sbjct 721 IRGKEQLQLLMPLKAPKEVTFLEGDAHDTVLTSEEVVLKSGELEALETPIDSFTSGAVVG 780 Query 781 TPVCINGLMLLELENKEQYCALSPGLLATNNVFRLKGGAPVKGVTFGEDTVLEVQGYKNV 840 TPVCINGLMLLELENKEQYCALSPGLLATNNVFRLKGGAPVKGVTFGEDTVLEVQGYKNV Sbjct 781 TPVCINGLMLLELENKEQYCALSPGLLATNNVFRLKGGAPVKGVTFGEDTVLEVQGYKNV 840 Query 841 KITFELDVRVDKVLNEKCSVYTVESGTEVTEFACVVAEAVVKTLQPVSDLLTPMGIDLDE 900 KITFELDVRVDKVLNEKCSVYTVESGTEVTEFACVVAEAVVKTLQPVSDLLTPMGIDLDE Sbjct 841 KITFELDVRVDKVLNEKCSVYTVESGTEVTEFACVVAEAVVKTLQPVSDLLTPMGIDLDE 900 Query 901 WSVATFYLFDDAGEEKLSSRMYCSFYPPDEEEDCEECEDEEETCEHEYGTEDDYKGLPLE 960 WSVATFYLFDDAGEEKLSSRMYCSFYPPDEEEDCEECEDEEETCEHEYGTEDDYKGLPLE Sbjct 901 WSVATFYLFDDAGEEKLSSRMYCSFYPPDEEEDCEECEDEEETCEHEYGTEDDYKGLPLE 960 Query 961 FGASTETPHVEEEEEEEDWLDDAIEAEPEPEPLPEEPVNQFVGYLKLTDNVAIKCIDIVK 1020 FGASTETPHVEEEEEEEDWLDDAIEAEPEPEPLPEEPVNQFVGYLKLTDNVAIKCIDIVK Sbjct 961 FGASTETPHVEEEEEEEDWLDDAIEAEPEPEPLPEEPVNQFVGYLKLTDNVAIKCIDIVK 1020 Query 1021 EAQSAKPTVIVNAANTHLKHGGGVAGALNKATNGAMQNESDEYIRQNGPLTVGGSCLLSG 1080 EAQSAKPTVIVNAANTHLKHGGGVAGALNKATNGAMQNESDEYIRQNGPLTVGGSCLLSG Sbjct 1021 EAQSAKPTVIVNAANTHLKHGGGVAGALNKATNGAMQNESDEYIRQNGPLTVGGSCLLSG 1080 Query 1081 HNLAEKCLHVVGPNLNAGEDVQLLKRAYENFNSQDVLLAPLLSAGIFGAKPLQSLKMCVE 1140 HNLAEKCLHVVGPNLNAGEDVQLLKRAYENFNSQDVLLAPLLSAGIFGAKPLQSLKMCVE Sbjct 1081 HNLAEKCLHVVGPNLNAGEDVQLLKRAYENFNSQDVLLAPLLSAGIFGAKPLQSLKMCVE 1140 Query 1141 IVRTQVYLAVNDKSLYDQIVLDYLDSLKPKVESPNKEEEPKLEEPKAVQPVAEKPVDVKP 1200 IVRTQVYLAVNDKSLYDQIVLDYLDSLKPKVESPNKEEEPKLEEPKAVQPVAEKPVDVKP Sbjct 1141 IVRTQVYLAVNDKSLYDQIVLDYLDSLKPKVESPNKEEEPKLEEPKAVQPVAEKPVDVKP 1200 Query 1201 KIKACIDEVTTTLEETKFLTNKLLLFADINGKLYQDSQNMLRGEDMSFLEKDAPYIVGDV 1260 KIKACIDEVTTTLEETKFLTNKLLLFADINGKLYQDSQNMLRGEDMSFLEKDAPYIVGDV Sbjct 1201 KIKACIDEVTTTLEETKFLTNKLLLFADINGKLYQDSQNMLRGEDMSFLEKDAPYIVGDV 1260 Query 1261 ITSGDITCVIIPAKKSGGTTEMLARALKEVPVAEYITTYPGQGCAGYTLEEAKTALKKCK 1320 ITSGDITCVIIPAKKSGGTTEMLARALKEVPVAEYITTYPGQGCAGYTLEEAKTALKKCK Sbjct 1261 ITSGDITCVIIPAKKSGGTTEMLARALKEVPVAEYITTYPGQGCAGYTLEEAKTALKKCK 1320 Query 1321 SAFYVLPSETPNEKEEVLGTVSWNLREMLAHAEETRKLMPICLDVRAIMATIQRKYKGIK 1380 SAFYVLPSETPNEKEEVLGTVSWNLREMLAHAEETRKLMPICLDVRAIMATIQRKYKGIK Sbjct 1321 SAFYVLPSETPNEKEEVLGTVSWNLREMLAHAEETRKLMPICLDVRAIMATIQRKYKGIK 1380 Query 1381 VQEGIVDYGVRFFFYTSKEPVASIITKLNSLNEPLVTMPIGYVTHGLNLEEAARCMRSLK 1440 VQEGIVDYGVRFFFYTSKEPVASIITKLNSLNEPLVTMPIGYVTHGLNLEEAARCMRSLK Sbjct 1381 VQEGIVDYGVRFFFYTSKEPVASIITKLNSLNEPLVTMPIGYVTHGLNLEEAARCMRSLK 1440 Query 1441 APAVVSVSSPDAVTAYNGYLTSSSKTPEEYFVETTSLAGSYRDWSYSGQRTELGVEFLKR 1500 APAVVSVSSPDAVTAYNGYLTSSSKTPEEYFVETTSLAGSYRDWSYSGQRTELGVEFLKR Sbjct 1441 APAVVSVSSPDAVTAYNGYLTSSSKTPEEYFVETTSLAGSYRDWSYSGQRTELGVEFLKR 1500 Query 1501 GDKIVYHTTGSPIEFHLDGEVLPLDKLKSLLSLREVKTIKVFTTVDNTNLHTHIVDMSMT 1560 GDKIVYHTTGSPIEFHLDGEVLPLDKLKSLLSLREVKTIKVFTTVDNTNLHTHIVDMSMT Sbjct 1501 GDKIVYHTTGSPIEFHLDGEVLPLDKLKSLLSLREVKTIKVFTTVDNTNLHTHIVDMSMT 1560 Query 1561 YGQQFGPTYLDGADVTKIKPHVNHEGKTFFVLPSDDTLRSEAFEYYHTIDESFLGRYMSA 1620 YGQQFGPTYLDGADVTKIKPHVNHEGKTFFVLPSDDTLRSEAFEYYHTIDESFLGRYMSA Sbjct 1561 YGQQFGPTYLDGADVTKIKPHVNHEGKTFFVLPSDDTLRSEAFEYYHTIDESFLGRYMSA 1620 Query 1621 LNHTKKWKFPQVGGLTSIKWADNNCYLSSVLLALQQVEVKFNAPALQEAYYRARAGDAAN 1680 LNHTKKWKFPQVGGLTSIKWADNNCYLSSVLLALQQVEVKFNAPALQEAYYRARAGDAAN Sbjct 1621 LNHTKKWKFPQVGGLTSIKWADNNCYLSSVLLALQQVEVKFNAPALQEAYYRARAGDAAN 1680 Query 1681 FCALILAYSNKTVGELGDVRETMTHLLQHANLESAKRVLNVVCKHCGQKTTTLKGVEAVM 1740 FCALILAYSNKTVGELGDVRETMTHLLQHANLESAKRVLNVVCKHCGQKTTTLKGVEAVM Sbjct 1681 FCALILAYSNKTVGELGDVRETMTHLLQHANLESAKRVLNVVCKHCGQKTTTLKGVEAVM 1740 Query 1741 YMGTLSYDELKTGVSIPCVCGRNATQYLVQQESSFVMMSAPPAEYKLQQGAFLCANEYTG 1800 YMGTLSYDELKTGVSIPCVCGRNATQYLVQQESSFVMMSAPPAEYKLQQGAFLCANEYTG Sbjct 1741 YMGTLSYDELKTGVSIPCVCGRNATQYLVQQESSFVMMSAPPAEYKLQQGAFLCANEYTG 1800 Query 1801 NYQCGHYTHITAKETLYRVDGAHLTKMSEYKGPVTDVFYKETSYTTAIKPVSYKLDGVTY 1860 NYQCGHYTHITAKETLYRVDGAHLTKMSEYKGPVTDVFYKETSYTTAIKPVSYKLDGVTY Sbjct 1801 NYQCGHYTHITAKETLYRVDGAHLTKMSEYKGPVTDVFYKETSYTTAIKPVSYKLDGVTY 1860 Query 1861 TEIEPKLDGYYKKGNAYYTEQPIDLVPTQPMPNASFDNFKLTCSNTKFADDLNQMTGFKK 1920 TEIEPKLDGYYKKGNAYYTEQPIDLVPTQPMPNASFDNFKLTCSNTKFADDLNQMTGFKK Sbjct 1861 TEIEPKLDGYYKKGNAYYTEQPIDLVPTQPMPNASFDNFKLTCSNTKFADDLNQMTGFKK 1920 Query 1921 PASRELTVTFFPDLNGDVVAIDYRHYSTSFKKGAKLVHKPILWHINQTTNKTTYKPNIWC 1980 PASRELTVTFFPDLNGDVVAIDYRHYSTSFKKGAKLVHKPILWHINQTTNKTTYKPNIWC Sbjct 1921 PASRELTVTFFPDLNGDVVAIDYRHYSTSFKKGAKLVHKPILWHINQTTNKTTYKPNIWC 1980 Query 1981 LRCLWSTKPVDTSNSFEVLVVEDTQGMDNLACESQTTTSEEVVENPTVQKEIIECDVKTT 2040 LRCLWSTKPVDTSNSFEVLVVEDTQGMDNLACESQTTTSEEVVENPTVQKEIIECDVKTT Sbjct 1981 LRCLWSTKPVDTSNSFEVLVVEDTQGMDNLACESQTTTSEEVVENPTVQKEIIECDVKTT 2040 Query 2041 EVVGNVILKPSEEGVKVTQELGHEDLMAAYVEETSITIKKPNELSLALGLKTLATHGAAA 2100 EVVGNVILKPSEEGVKVTQELGHEDLMAAYVEETSITIKKPNELSLALGLKTLATHGAAA Sbjct 2041 EVVGNVILKPSEEGVKVTQELGHEDLMAAYVEETSITIKKPNELSLALGLKTLATHGAAA 2100 Query 2101 INSVPWSKILAYVKPFLGQTAVITSNCIKKCVQRVFSNYMPYVITLLFQLCTFTKSTNSR 2160 INSVPWSKILAYVKPFLGQTAVITSNCIKKCVQRVFSNYMPYVITLLFQLCTFTKSTNSR Sbjct 2101 INSVPWSKILAYVKPFLGQTAVITSNCIKKCVQRVFSNYMPYVITLLFQLCTFTKSTNSR 2160 Query 2161 IKASLPTTIAKNSVKSVAKLCLDVCINYVKSPKFSKLFTIVMWLLLLSICLGSLTYVTAV 2220 IKASLPTTIAKNSVKSVAKLCLDVCINYVKSPKFSKLFTIVMWLLLLSICLGSLTYVTAV Sbjct 2161 IKASLPTTIAKNSVKSVAKLCLDVCINYVKSPKFSKLFTIVMWLLLLSICLGSLTYVTAV 2220 Query 2221 LGVCLSSLGVPSYCDGVRELYINSSNVTTMDFCQGYFPCSVCLSGLDSLDSYPALETIQV 2280 LGVCLSSLGVPSYCDGVRELYINSSNVTTMDFCQGYFPCSVCLSGLDSLDSYPALETIQV Sbjct 2221 LGVCLSSLGVPSYCDGVRELYINSSNVTTMDFCQGYFPCSVCLSGLDSLDSYPALETIQV 2280 Query 2281 TISSYKLDLTFLGLAAEWLLAYMLFTKFFYLLGLSAIMQAFFGYFASHFISNSWLMWFII 2340 TISSYKLDLTFLGLAAEWLLAYMLFTKFFYLLGLSAIMQAFFGYFASHFISNSWLMWFII Sbjct 2281 TISSYKLDLTFLGLAAEWLLAYMLFTKFFYLLGLSAIMQAFFGYFASHFISNSWLMWFII 2340 Query 2341 SIVQMAPVSAMVRMYIFFASFYYVWKSYVHIMDGCTSSTCMMCYKRNRATRVECTTIVNG 2400 SIVQMAPVSAMVRMYIFFASFYYVWKSYVHIMDGCTSSTCMMCYKRNRATRVECTTIVNG Sbjct 2341 SIVQMAPVSAMVRMYIFFASFYYVWKSYVHIMDGCTSSTCMMCYKRNRATRVECTTIVNG 2400 Query 2401 VKRSFYVYANGGRGFCKAHNWNCLNCDTFCAGSTFISDEVARDLSLQFKRPINPTDQSAY 2460 VKRSFYVYANGGRGFCKAHNWNCLNCDTFCAGSTFISDEVARDLSLQFKRPINPTDQSAY Sbjct 2401 VKRSFYVYANGGRGFCKAHNWNCLNCDTFCAGSTFISDEVARDLSLQFKRPINPTDQSAY 2460 Query 2461 VVDSVTVKNGALHLYFDKAGQKTYERHPLSHFVNLDNLRANNTKGSLPINVIVFDGKSKC 2520 VVDSVTVKNGALHLYFDKAGQKTYERHPLSHFVNLDNLRANNTKGSLPINVIVFDGKSKC Sbjct 2461 VVDSVTVKNGALHLYFDKAGQKTYERHPLSHFVNLDNLRANNTKGSLPINVIVFDGKSKC 2520 Query 2521 EESAAKSASVYYSQLMCQPILLLDQALVSDVGDSTEVSVKMFDAYVDTFSATFSVPMEKL 2580 EESAAKSASVYYSQLMCQPILLLDQALVSDVGDSTEVSVKMFDAYVDTFSATFSVPMEKL Sbjct 2521 EESAAKSASVYYSQLMCQPILLLDQALVSDVGDSTEVSVKMFDAYVDTFSATFSVPMEKL 2580 Query 2581 KALVATAHSELAKGVALDGVLSTFVSAARQGVVDTDVDTKDVIECLKLSHHSDIEVTGDS 2640 KALVATAHSELAKGVALDGVLSTFVSAARQGVVDTDVDTKDVIECLKLSHHSDIEVTGDS Sbjct 2581 KALVATAHSELAKGVALDGVLSTFVSAARQGVVDTDVDTKDVIECLKLSHHSDIEVTGDS 2640 Query 2641 CNNFMLTYNKVENMTPRDLGACIDCNARHINAQVAKSHNVSLVWNVKDYMSLSEQLRKQI 2700 CNNFMLTYNKVENMTPRDLGACIDCNARHINAQVAKSHNVSLVWNVKDYMSLSEQLRKQI Sbjct 2641 CNNFMLTYNKVENMTPRDLGACIDCNARHINAQVAKSHNVSLVWNVKDYMSLSEQLRKQI 2700 Query 2701 RSAAKKNNIPFRLTCATTRQVVNVITTKISLKGGKVVSTWFKLLLKVTLLCVLAALFCYV 2760 RSAAKKNNIPFRLTCATTRQVVNVITTKISLKGGKVVSTWFKLLLKVTLLCVLAALFCYV Sbjct 2701 RSAAKKNNIPFRLTCATTRQVVNVITTKISLKGGKVVSTWFKLLLKVTLLCVLAALFCYV 2760 Query 2761 IMPVHSLSVHDGYTNEIIGYKAIQDGVTRDIVSTDDCFANKHAGFDSWFSQRGGSYRNDK 2820 IMPVHSLSVHDGYTNEIIGYKAIQDGVTRDIVSTDDCFANKHAGFDSWFSQRGGSYRNDK Sbjct 2761 IMPVHSLSVHDGYTNEIIGYKAIQDGVTRDIVSTDDCFANKHAGFDSWFSQRGGSYRNDK 2820 Query 2821 NCPVVAAIITREIGFIVPGLPGTVLRALNGDFLHFLPRVFSAVGNICYTPSKLIEYSDFA 2880 NCPVVAAIITREIGFIVPGLPGTVLRALNGDFLHFLPRVFSAVGNICYTPSKLIEYSDFA Sbjct 2821 NCPVVAAIITREIGFIVPGLPGTVLRALNGDFLHFLPRVFSAVGNICYTPSKLIEYSDFA 2880 Query 2881 TSACVLAAECTIFKDAMGKPVPYCYDTNLLEGSISYSELRPDTRYVLMDGSIIQFPNTYL 2940 TSACVLAAECTIFKDAMGKPVPYCYDTNLLEGSISYSELRPDTRYVLMDGSIIQFPNTYL Sbjct 2881 TSACVLAAECTIFKDAMGKPVPYCYDTNLLEGSISYSELRPDTRYVLMDGSIIQFPNTYL 2940 Query 2941 EGSVRVVTTFDAEYCRHGTCERSEVGVCLSTSGRWVLNNEHYRALPGVFCGVDAMNLIAN 3000 EGSVRVVTTFDAEYCRHGTCERSEVGVCLSTSGRWVLNNEHYRALPGVFCGVDAMNLIAN Sbjct 2941 EGSVRVVTTFDAEYCRHGTCERSEVGVCLSTSGRWVLNNEHYRALPGVFCGVDAMNLIAN 3000 Query 3001 IFTPLVQPVGALDVSASVVAGGIIAILVTCAAYYFMKFRRAFGEYNHVVAANALLFLMSF 3060 IFTPLVQPVGALDVSASVVAGGIIAILVTCAAYYFMKFRRAFGEYNHVVAANALLFLMSF Sbjct 3001 IFTPLVQPVGALDVSASVVAGGIIAILVTCAAYYFMKFRRAFGEYNHVVAANALLFLMSF 3060 Query 3061 TILCLAPAYSFLPGVYSIFYLYLTFYFTNDVSFLAHLQWFAMFSPIVPFWITAIYVFCIS 3120 TILCLAPAYSFLPGVYSIFYLYLTFYFTNDVSFLAHLQWFAMFSPIVPFWITAIYVFCIS Sbjct 3061 TILCLAPAYSFLPGVYSIFYLYLTFYFTNDVSFLAHLQWFAMFSPIVPFWITAIYVFCIS 3120 Query 3121 LKHFHWFFSNYLKKRVMFNGVTFSTFEEAALCTFLLNKEMYLRLRSETLLPLTQYNRYLA 3180 LKHFHWFFSNYLKKRVMFNGVTFSTFEEAALCTFLLNKEMYLRLRSETLLPLTQYNRYLA Sbjct 3121 LKHFHWFFSNYLKKRVMFNGVTFSTFEEAALCTFLLNKEMYLRLRSETLLPLTQYNRYLA 3180 Query 3181 LYNKYKYFSGALDTTSYREAACCHLAKALNDFSNSGADVLYQPPQTSITSAVLQSGFRKM 3240 LYNKYKYFSGALDTTSYREAACCHLAKALNDFSNSGADVLYQPPQTSITSAVLQSGFRKM Sbjct 3181 LYNKYKYFSGALDTTSYREAACCHLAKALNDFSNSGADVLYQPPQTSITSAVLQSGFRKM 3240 Query 3241 AFPSGKVEGCMVQVTCGTTTLNGLWLDDTVYCPRHVVCTAEDMLNPNYDDLLIRKSNHSF 3300 AFPSGKVEGCMVQVTCGTTTLNGLWLDDTVYCPRHVVCTAEDMLNPNYDDLLIRKSNHSF Sbjct 3241 AFPSGKVEGCMVQVTCGTTTLNGLWLDDTVYCPRHVVCTAEDMLNPNYDDLLIRKSNHSF 3300 Query 3301 LVQAGNVQLRVIGHSMQNCLLRLKVDTSNPKTPKYKFVRIQPGQTFSVLACYNGSPSGVY 3360 LVQAGNVQLRVIGHSMQNCLLRLKVDTSNPKTPKYKFVRIQPGQTFSVLACYNGSPSGVY Sbjct 3301 LVQAGNVQLRVIGHSMQNCLLRLKVDTSNPKTPKYKFVRIQPGQTFSVLACYNGSPSGVY 3360 Query 3361 QCAMRPNHTIKGSFLNGSCGSVGFNIDYDCVSFCYMHHMELPTGVHAGTDLEGKFYGPFV 3420 QCAMRPNHTIKGSFLNGSCGSVGFNIDYDCVSFCYMHHMELPTGVHAGTDLEGKFYGPFV Sbjct 3361 QCAMRPNHTIKGSFLNGSCGSVGFNIDYDCVSFCYMHHMELPTGVHAGTDLEGKFYGPFV 3420 Query 3421 DRQTAQAAGTDTTITLNVLAWLYAAVINGDRWFLNRFTTTLNDFNLVAMKYNYEPLTQDH 3480 DRQTAQAAGTDTTITLNVLAWLYAAVINGDRWFLNRFTTTLNDFNLVAMKYNYEPLTQDH Sbjct 3421 DRQTAQAAGTDTTITLNVLAWLYAAVINGDRWFLNRFTTTLNDFNLVAMKYNYEPLTQDH 3480 Query 3481 VDILGPLSAQTGIAVLDMCAALKELLQNGMNGRTILGSTILEDEFTPFDVVRQCSGVTFQ 3540 VDILGPLSAQTGIAVLDMCAALKELLQNGMNGRTILGSTILEDEFTPFDVVRQCSGVTFQ Sbjct 3481 VDILGPLSAQTGIAVLDMCAALKELLQNGMNGRTILGSTILEDEFTPFDVVRQCSGVTFQ 3540 Query 3541 GKFKKIVKGTHHWMLLTFLTSLLILVQSTQWSLFFFVYENAFLPFALGIMAVAACAMLLV 3600 GKFKKIVKGTHHWMLLTFLTSLLILVQSTQWSLFFFVYENAFLPFALGIMAVAACAMLLV Sbjct 3541 GKFKKIVKGTHHWMLLTFLTSLLILVQSTQWSLFFFVYENAFLPFALGIMAVAACAMLLV 3600 Query 3601 KHKHAFLCLFLLPSLATVAYFNMVYMPASWVMRIMTWLELADTSLSGYRLKDCVMYASAL 3660 KHKHAFLCLFLLPSLATVAYFNMVYMPASWVMRIMTWLELADTSLSGYRLKDCVMYASAL Sbjct 3601 KHKHAFLCLFLLPSLATVAYFNMVYMPASWVMRIMTWLELADTSLSGYRLKDCVMYASAL 3660 Query 3661 VLLILMTARTVYDDAARRVWTLMNVITLVYKVYYGNSLDQAISMWALVISVTSNYSGVVT 3720 VLLILMTARTVYDDAARRVWTLMNVITLVYKVYYGNSLDQAISMWALVISVTSNYSGVVT Sbjct 3661 VLLILMTARTVYDDAARRVWTLMNVITLVYKVYYGNSLDQAISMWALVISVTSNYSGVVT 3720 Query 3721 TIMFLARAIVFVCVEYYPLLFITGNTLQCIMLVYCFLGYCCCCYFGLFCLLNRYFRLTLG 3780 TIMFLARAIVFVCVEYYPLLFITGNTLQCIMLVYCFLGYCCCCYFGLFCLLNRYFRLTLG Sbjct 3721 TIMFLARAIVFVCVEYYPLLFITGNTLQCIMLVYCFLGYCCCCYFGLFCLLNRYFRLTLG 3780 Query 3781 VYDYLVSTQEFRYMNSQGLLPPKSSIDAFKLNIKLLGIGGKPCIKVATVQSKMSDVKCTS 3840 VYDYLVSTQEFRYMNSQGLLPPKSSIDAFKLNIKLLGIGGKPCIKVATVQSKMSDVKCTS Sbjct 3781 VYDYLVSTQEFRYMNSQGLLPPKSSIDAFKLNIKLLGIGGKPCIKVATVQSKMSDVKCTS 3840 Query 3841 VVLLSVLQQLRVESSSKLWAQCVQLHNDILLAKDTTEAFEKMVSLLSVLLSMQGAVDINK 3900 VVLLSVLQQLRVESSSKLWAQCVQLHNDILLAKDTTEAFEKMVSLLSVLLSMQGAVDINK Sbjct 3841 VVLLSVLQQLRVESSSKLWAQCVQLHNDILLAKDTTEAFEKMVSLLSVLLSMQGAVDINK 3900 Query 3901 LCEEMLDNRATLQAIASEFSSLPSYAAYATAQEAYEQAVSNGDSEVVLKKLKKSLNVAKS 3960 LCEEMLDNRATLQAIASEFSSLPSYAAYATAQEAYEQAVSNGDSEVVLKKLKKSLNVAKS Sbjct 3901 LCEEMLDNRATLQAIASEFSSLPSYAAYATAQEAYEQAVSNGDSEVVLKKLKKSLNVAKS 3960 Query 3961 EFDHDAAMQRKLEKMADQAMTQMYKQARSEDKRAKVTSAMQTMLFTMLRKLDNDALNNII 4020 EFDHDAAMQRKLEKMADQAMTQMYKQARSEDKRAKVTSAMQTMLFTMLRKLDNDALNNII Sbjct 3961 EFDHDAAMQRKLEKMADQAMTQMYKQARSEDKRAKVTSAMQTMLFTMLRKLDNDALNNII 4020 Query 4021 NNARDGCVPLNIIPLTTAAKLMVVVPDYGTYKNTCDGNTFTYASALWEIQQVVDADSKIV 4080 NNARDGCVPLNIIPLTTAAKLMVVVPDYGTYKNTCDGNTFTYASALWEIQQVVDADSKIV Sbjct 4021 NNARDGCVPLNIIPLTTAAKLMVVVPDYGTYKNTCDGNTFTYASALWEIQQVVDADSKIV 4080 Query 4081 QLSEINMDNSPNLAWPLIVTALRANSAVKLQNNELSPVALRQMSCAAGTTQTACTDDNAL 4140 QLSEINMDNSPNLAWPLIVTALRANSAVKLQNNELSPVALRQMSCAAGTTQTACTDDNAL Sbjct 4081 QLSEINMDNSPNLAWPLIVTALRANSAVKLQNNELSPVALRQMSCAAGTTQTACTDDNAL 4140 Query 4141 AYYNNAKGGRFVLALLSDHQDLKWARFPKSDGTGTIYTELEPPCRFVTDTPKGPKVKYLY 4200 AYYNNAKGGRFVLALLSDHQDLKWARFPKSDGTGTIYTELEPPCRFVTDTPKGPKVKYLY Sbjct 4141 AYYNNAKGGRFVLALLSDHQDLKWARFPKSDGTGTIYTELEPPCRFVTDTPKGPKVKYLY 4200 Query 4201 FIKGLNNLNRGMVLGSLAATVRLQAGNATEVPANSTVLSFCAFAVDPAKAYKDYLASGGQ 4260 FIKGLNNLNRGMVLGSLAATVRLQAGNATEVPANSTVLSFCAFAVDPAKAYKDYLASGGQ Sbjct 4201 FIKGLNNLNRGMVLGSLAATVRLQAGNATEVPANSTVLSFCAFAVDPAKAYKDYLASGGQ 4260 Query 4261 PITNCVKMLCTHTGTGQAITVTPEANMDQESFGGASCCLYCRCHIDHPNPKGFCDLKGKY 4320 PITNCVKMLCTHTGTGQAITVTPEANMDQESFGGASCCLYCRCHIDHPNPKGFCDLKGKY Sbjct 4261 PITNCVKMLCTHTGTGQAITVTPEANMDQESFGGASCCLYCRCHIDHPNPKGFCDLKGKY 4320 Query 4321 VQIPTTCANDPVGFTLRNTVCTVCGMWKGYGCSCDQLREPMMQSADASTFLN 4372 VQIPTTCANDPVGFTLRNTVCTVCGMWKGYGCSCDQLREPMMQSADASTFLN Sbjct 4321 VQIPTTCANDPVGFTLRNTVCTVCGMWKGYGCSCDQLREPMMQSADASTFLN 4372 >RecName: Full=Replicase polyprotein 1a; Short=pp1a; AltName: Full=ORF1a polyprotein; Contains: RecName: Full=Host translation inhibitor nsp1; AltName: Full=Leader protein; AltName: Full=Non-structural protein 1; Short=nsp1; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p65 homolog; Contains: RecName: Full=Papain-like protease nsp3; Short=PL-PRO; AltName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=PL2-PRO; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; Contains: RecName: Full=3C-like proteinase nsp5; Short=3CL-PRO; Short=3CLp; AltName: Full=Main protease; Short=Mpro; AltName: Full=Non-structural protein 5; Short=nsp5; AltName: Full=SARS coronavirus main proteinase; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; Contains: RecName: Full=RNA-capping enzyme subunit nsp9; AltName: Full=Non-structural protein 9; Short=nsp9; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; Contains: RecName: Full=Non-structural protein 11; Short=nsp11 [Severe acute respiratory syndrome-related coronavirus] Sequence ID: P0C6U8.1 Length: 4382 Range 1: 1 to 4382 Score:8595 bits(22303), Expect:0.0, Method:Compositional matrix adjust., Identities:4122/4383(94%), Positives:4260/4383(97%), Gaps:8/4383(0%) Query 1 MESLVLGVNEKTHVQLSLPVLQVRDVLVRGFGDSVEEALSEAREHLKNGTCGLVELEKGV 60 MESLVLGVNEKTHVQLSLPVLQVRDVLVRGFGDSVEEALSEAREHLKNGTCGLVELEKGV Sbjct 1 MESLVLGVNEKTHVQLSLPVLQVRDVLVRGFGDSVEEALSEAREHLKNGTCGLVELEKGV 60 Query 61 LPQLEQPYVFIKRSDALSTNHGHKVVELVAELDGIQFGRSGITLGVLVPHVGETPIAYRN 120 LPQLEQPYVFIKRSDALSTNHGHKVVELVAE+DGIQ+GRSGITLGVLVPHVGETPIAYRN Sbjct 61 LPQLEQPYVFIKRSDALSTNHGHKVVELVAEMDGIQYGRSGITLGVLVPHVGETPIAYRN 120 Query 121 VLLRKNGNKGAGGHSFGIDLKSYDLGDELGTDPIEDYEQNWNTKHGSGALRELTRELNGG 180 VLLRKNGNKGAGGHS+GIDLKSYDLGDELGTDPIEDYEQNWNTKHGSGALRELTRELNGG Sbjct 121 VLLRKNGNKGAGGHSYGIDLKSYDLGDELGTDPIEDYEQNWNTKHGSGALRELTRELNGG 180 Query 181 VVTRYVDNNFCGPDGYPLECIKDFLARAGKSMCTLSEQLDYIESKRGVYCCREHEHEIVW 240 VTRYVDNNFCGPDGYPL+CIKDFLARAGKSMCTLSEQLDYIESKRGVYCCR+HEHEI W Sbjct 181 AVTRYVDNNFCGPDGYPLDCIKDFLARAGKSMCTLSEQLDYIESKRGVYCCRDHEHEIAW 240 Query 241 FTERSEKSYEHQTPFEIKSAKKFDTFKGECPKFVFPLNSKVKVIQPRVEKKKTEGFMGRI 300 FTERS+KSYEHQTPFEIKSAKKFDTFKGECPKFVFPLNSKVKVIQPRVEKKKTEGFMGRI Sbjct 241 FTERSDKSYEHQTPFEIKSAKKFDTFKGECPKFVFPLNSKVKVIQPRVEKKKTEGFMGRI 300 Query 301 RSVYPVATPQECNDMHLSTLMKCNHCDEVSWQTCDFLKATCEQCGTENLVCEGPTTCGYL 360 RSVYPVA+PQECN+MHLSTLMKCNHCDEVSWQTCDFLKATCE CGTENLV EGPTTCGYL Sbjct 301 RSVYPVASPQECNNMHLSTLMKCNHCDEVSWQTCDFLKATCEHCGTENLVIEGPTTCGYL 360 Query 361 PTNAVVKMPCPACQDPEVGPEHSVADYHNHSNIETRLRKGGRTKCFGGCVFSYVGCYNKR 420 PTNAVVKMPCPACQDPE+GPEHSVADYHNHSNIETRLRKGGRT+CFGGCVF+YVGCYNKR Sbjct 361 PTNAVVKMPCPACQDPEIGPEHSVADYHNHSNIETRLRKGGRTRCFGGCVFAYVGCYNKR 420 Query 421 AYWVPRASANIGANHTGITGENVETLNEDLLEILNRERVNINIVGDFRFNEEVAIILASF 480 AYWVPRASA+IG+ HTGITG+NVETLNEDLLEIL+RERVNINIVGDF NEEVAIILASF Sbjct 421 AYWVPRASADIGSGHTGITGDNVETLNEDLLEILSRERVNINIVGDFHLNEEVAIILASF 480 Query 481 SASPSAFIETVKGLDYKSFKVIVESCGNYKVTNGKPVTGAWNIGQQRSILTPLCGFPSQA 540 SAS SAFI+T+K LDYKSFK IVESCGNYKVT GKPV GAWNIGQQRS+LTPLCGFPSQA Sbjct 481 SASTSAFIDTIKSLDYKSFKTIVESCGNYKVTKGKPVKGAWNIGQQRSVLTPLCGFPSQA 540 Query 541 AGVIRSIFSRTLDAANHSILDLQRAAVTTLDGISEQSLRLVDAMVYTSDLLTNSVVVMAY 600 AGVIRSIF+RTLDAANHSI DLQRAAVT LDGISEQSLRLVDAMVYTSDLLTNSV++MAY Sbjct 541 AGVIRSIFARTLDAANHSIPDLQRAAVTILDGISEQSLRLVDAMVYTSDLLTNSVIIMAY 600 Query 601 VTGGLVQQTMQWLSNMLGTAVDKLKPVFTWVEAKLSAGVEFLRDAWEILKFLITGVFDVI 660 VTGGLVQQT QWLSN+LGT V+KL+P+F W+EAKLSAGVEFL+DAWEILKFLITGVFD++ Sbjct 601 VTGGLVQQTSQWLSNLLGTTVEKLRPIFEWIEAKLSAGVEFLKDAWEILKFLITGVFDIV 660 Query 661 KGQIQVATDNIKECVKIFLGVVNKALEMCLDQVTIAGTKLRALNLGEVFIAQSRGLYRQC 720 KGQIQVA+DNIK+CVK F+ VVNKALEMC+DQVTIAG KLR+LNLGEVFIAQS+GLYRQC Sbjct 661 KGQIQVASDNIKDCVKCFIDVVNKALEMCIDQVTIAGAKLRSLNLGEVFIAQSKGLYRQC 720 Query 721 IRGKEQLQLLMPLKAPKEVTFLEGDAHDTVLTSEEVVLKSGELEALETPIDSFTSGAVVG 780 IRGKEQLQLLMPLKAPKEVTFLEGD+HDTVLTSEEVVLK+GELEALETP+DSFT+GA+VG Sbjct 721 IRGKEQLQLLMPLKAPKEVTFLEGDSHDTVLTSEEVVLKNGELEALETPVDSFTNGAIVG 780 Query 781 TPVCINGLMLLELENKEQYCALSPGLLATNNVFRLKGGAPVKGVTFGEDTVLEVQGYKNV 840 TPVC+NGLMLLE+++KEQYCALSPGLLATNNVFRLKGGAP+KGVTFGEDTV EVQGYKNV Sbjct 781 TPVCVNGLMLLEIKDKEQYCALSPGLLATNNVFRLKGGAPIKGVTFGEDTVWEVQGYKNV 840 Query 841 KITFELDVRVDKVLNEKCSVYTVESGTEVTEFACVVAEAVVKTLQPVSDLLTPMGIDLDE 900 +ITFELD RVDKVLNEKCSVYTVESGTEVTEFACVVAEAVVKTLQPVSDLLT MGIDLDE Sbjct 841 RITFELDERVDKVLNEKCSVYTVESGTEVTEFACVVAEAVVKTLQPVSDLLTNMGIDLDE 900 Query 901 WSVATFYLFDDAGEEKLSSRMYCSFYPPDEEEDCEECEDEEETCE---HEYGTEDDYKGL 957 WSVATFYLFDDAGEE SSRMYCSFYPPDEEE+ + +EEE E HEYGTEDDY+GL Sbjct 901 WSVATFYLFDDAGEENFSSRMYCSFYPPDEEEEDDAECEEEEIDETCEHEYGTEDDYQGL 960 Query 958 PLEFGASTETPHVEEEEEEEDWLDDAIEAEP---EPEPLPEEPVNQFVGYLKLTDNVAIK 1014 PLEFGAS ET VEEEEEE DWLDD E EPEP PEEPVNQF GYLKLTDNVAIK Sbjct 961 PLEFGASAETVRVEEEEEE-DWLDDTTEQSEIEPEPEPTPEEPVNQFTGYLKLTDNVAIK 1019 Query 1015 CIDIVKEAQSAKPTVIVNAANTHLKHGGGVAGALNKATNGAMQNESDEYIRQNGPLTVGG 1074 C+DIVKEAQSA P VIVNAAN HLKHGGGVAGALNKATNGAMQ ESD+YI+ NGPLTVGG Sbjct 1020 CVDIVKEAQSANPMVIVNAANIHLKHGGGVAGALNKATNGAMQKESDDYIKLNGPLTVGG 1079 Query 1075 SCLLSGHNLAEKCLHVVGPNLNAGEDVQLLKRAYENFNSQDVLLAPLLSAGIFGAKPLQS 1134 SCLLSGHNLA+KCLHVVGPNLNAGED+QLLK AYENFNSQD+LLAPLLSAGIFGAKPLQS Sbjct 1080 SCLLSGHNLAKKCLHVVGPNLNAGEDIQLLKAAYENFNSQDILLAPLLSAGIFGAKPLQS 1139 Query 1135 LKMCVEIVRTQVYLAVNDKSLYDQIVLDYLDSLKPKVESPNKEEEPKLEEPKAVQ-PVAE 1193 L++CV+ VRTQVY+AVNDK+LY+Q+V+DYLD+LKP+VE+P +EE P E+ K + V + Sbjct 1140 LQVCVQTVRTQVYIAVNDKALYEQVVMDYLDNLKPRVEAPKQEEPPNTEDSKTEEKSVVQ 1199 Query 1194 KPVDVKPKIKACIDEVTTTLEETKFLTNKLLLFADINGKLYQDSQNMLRGEDMSFLEKDA 1253 KPVDVKPKIKACIDEVTTTLEETKFLTNKLLLFADINGKLY DSQNMLRGEDMSFLEKDA Sbjct 1200 KPVDVKPKIKACIDEVTTTLEETKFLTNKLLLFADINGKLYHDSQNMLRGEDMSFLEKDA 1259 Query 1254 PYIVGDVITSGDITCVIIPAKKSGGTTEMLARALKEVPVAEYITTYPGQGCAGYTLEEAK 1313 PY+VGDVITSGDITCV+IP+KK+GGTTEML+RALK+VPV EYITTYPGQGCAGYTLEEAK Sbjct 1260 PYMVGDVITSGDITCVVIPSKKAGGTTEMLSRALKKVPVDEYITTYPGQGCAGYTLEEAK 1319 Query 1314 TALKKCKSAFYVLPSETPNEKEEVLGTVSWNLREMLAHAEETRKLMPICLDVRAIMATIQ 1373 TALKKCKSAFYVLPSE PN KEE+LGTVSWNLREMLAHAEETRKLMPIC+DVRAIMATIQ Sbjct 1320 TALKKCKSAFYVLPSEAPNAKEEILGTVSWNLREMLAHAEETRKLMPICMDVRAIMATIQ 1379 Query 1374 RKYKGIKVQEGIVDYGVRFFFYTSKEPVASIITKLNSLNEPLVTMPIGYVTHGLNLEEAA 1433 RKYKGIK+QEGIVDYGVRFFFYTSKEPVASIITKLNSLNEPLVTMPIGYVTHG NLEEAA Sbjct 1380 RKYKGIKIQEGIVDYGVRFFFYTSKEPVASIITKLNSLNEPLVTMPIGYVTHGFNLEEAA 1439 Query 1434 RCMRSLKAPAVVSVSSPDAVTAYNGYLTSSSKTPEEYFVETTSLAGSYRDWSYSGQRTEL 1493 RCMRSLKAPAVVSVSSPDAVT YNGYLTSSSKT EE+FVET SLAGSYRDWSYSGQRTEL Sbjct 1440 RCMRSLKAPAVVSVSSPDAVTTYNGYLTSSSKTSEEHFVETVSLAGSYRDWSYSGQRTEL 1499 Query 1494 GVEFLKRGDKIVYHTTGSPIEFHLDGEVLPLDKLKSLLSLREVKTIKVFTTVDNTNLHTH 1553 GVEFLKRGDKIVYHT SP+EFHLDGEVL LDKLKSLLSLREVKTIKVFTTVDNTNLHT Sbjct 1500 GVEFLKRGDKIVYHTLESPVEFHLDGEVLSLDKLKSLLSLREVKTIKVFTTVDNTNLHTQ 1559 Query 1554 IVDMSMTYGQQFGPTYLDGADVTKIKPHVNHEGKTFFVLPSDDTLRSEAFEYYHTIDESF 1613 +VDMSMTYGQQFGPTYLDGADVTKIKPHVNHEGKTFFVLPSDDTLRSEAFEYYHT+DESF Sbjct 1560 LVDMSMTYGQQFGPTYLDGADVTKIKPHVNHEGKTFFVLPSDDTLRSEAFEYYHTLDESF 1619 Query 1614 LGRYMSALNHTKKWKFPQVGGLTSIKWADNNCYLSSVLLALQQVEVKFNAPALQEAYYRA 1673 LGRYMSALNHTKKWKFPQVGGLTSIKWADNNCYLSSVLLALQQ+EVKFNAPALQEAYYRA Sbjct 1620 LGRYMSALNHTKKWKFPQVGGLTSIKWADNNCYLSSVLLALQQLEVKFNAPALQEAYYRA 1679 Query 1674 RAGDAANFCALILAYSNKTVGELGDVRETMTHLLQHANLESAKRVLNVVCKHCGQKTTTL 1733 RAGDAANFCALILAYSNKTVGELGDVRETMTHLLQHANLESAKRVLNVVCKHCGQKTTTL Sbjct 1680 RAGDAANFCALILAYSNKTVGELGDVRETMTHLLQHANLESAKRVLNVVCKHCGQKTTTL 1739 Query 1734 KGVEAVMYMGTLSYDELKTGVSIPCVCGRNATQYLVQQESSFVMMSAPPAEYKLQQGAFL 1793 GVEAVMYMGTLSYD LKTGVSIPCVCGR+ATQYLVQQESSFVMMSAPPAEYKLQQG FL Sbjct 1740 TGVEAVMYMGTLSYDNLKTGVSIPCVCGRDATQYLVQQESSFVMMSAPPAEYKLQQGTFL 1799 Query 1794 CANEYTGNYQCGHYTHITAKETLYRVDGAHLTKMSEYKGPVTDVFYKETSYTTAIKPVSY 1853 CANEYTGNYQCGHYTHITAKETLYR+DGAHLTKMSEYKGPVTDVFYKETSYTT IKPVSY Sbjct 1800 CANEYTGNYQCGHYTHITAKETLYRIDGAHLTKMSEYKGPVTDVFYKETSYTTTIKPVSY 1859 Query 1854 KLDGVTYTEIEPKLDGYYKKGNAYYTEQPIDLVPTQPMPNASFDNFKLTCSNTKFADDLN 1913 KLDGVTYTEIEPKLDGYYKK NAYYTEQPIDLVPTQP+PNASFDNFKLTCSNTKFADDLN Sbjct 1860 KLDGVTYTEIEPKLDGYYKKDNAYYTEQPIDLVPTQPLPNASFDNFKLTCSNTKFADDLN 1919 Query 1914 QMTGFKKPASRELTVTFFPDLNGDVVAIDYRHYSTSFKKGAKLVHKPILWHINQTTNKTT 1973 QMTGF KPASREL+VTFFPDLNGDVVAIDYRHYS SFKKGAKL+HKPI+WHINQ T KTT Sbjct 1920 QMTGFTKPASRELSVTFFPDLNGDVVAIDYRHYSASFKKGAKLLHKPIVWHINQATTKTT 1979 Query 1974 YKPNIWCLRCLWSTKPVDTSNSFEVLVVEDTQGMDNLACESQTTTSEEVVENPTVQKEII 2033 +KPN WCLRCLWSTKPVDTSNSFEVL VEDTQGMDNLACESQ TSEEVVENPT+QKE+I Sbjct 1980 FKPNTWCLRCLWSTKPVDTSNSFEVLAVEDTQGMDNLACESQQPTSEEVVENPTIQKEVI 2039 Query 2034 ECDVKTTEVVGNVILKPSEEGVKVTQELGHEDLMAAYVEETSITIKKPNELSLALGLKTL 2093 ECDVKTTEVVGNVILKPS+EGVKVTQELGHEDLMAAYVE TSITIKKPNELSLALGLKT+ Sbjct 2040 ECDVKTTEVVGNVILKPSDEGVKVTQELGHEDLMAAYVENTSITIKKPNELSLALGLKTI 2099 Query 2094 ATHGAAAINSVPWSKILAYVKPFLGQTAVITSNCIKKCVQRVFSNYMPYVITLLFQLCTF 2153 ATHG AAINSVPWSKILAYVKPFLGQ A+ TSNC K+ QRVF+NYMPYV TLLFQLCTF Sbjct 2100 ATHGIAAINSVPWSKILAYVKPFLGQAAITTSNCAKRLAQRVFNNYMPYVFTLLFQLCTF 2159 Query 2154 TKSTNSRIKASLPTTIAKNSVKSVAKLCLDVCINYVKSPKFSKLFTIVMWLLLLSICLGS 2213 TKSTNSRI+ASLPTTIAKNSVKSVAKLCLD INYVKSPKFSKLFTI MWLLLLSICLGS Sbjct 2160 TKSTNSRIRASLPTTIAKNSVKSVAKLCLDAGINYVKSPKFSKLFTIAMWLLLLSICLGS 2219 Query 2214 LTYVTAVLGVCLSSLGVPSYCDGVRELYINSSNVTTMDFCQGYFPCSVCLSGLDSLDSYP 2273 L VTA GV LS+ G PSYC+GVRELY+NSSNVTTMDFC+G FPCS+CLSGLDSLDSYP Sbjct 2220 LICVTAAFGVLLSNFGAPSYCNGVRELYLNSSNVTTMDFCEGSFPCSICLSGLDSLDSYP 2279 Query 2274 ALETIQVTISSYKLDLTFLGLAAEWLLAYMLFTKFFYLLGLSAIMQAFFGYFASHFISNS 2333 ALETIQVTISSYKLDLT LGLAAEW+LAYMLFTKFFYLLGLSAIMQ FFGYFASHFISNS Sbjct 2280 ALETIQVTISSYKLDLTILGLAAEWVLAYMLFTKFFYLLGLSAIMQVFFGYFASHFISNS 2339 Query 2334 WLMWFIISIVQMAPVSAMVRMYIFFASFYYVWKSYVHIMDGCTSSTCMMCYKRNRATRVE 2393 WLMWFIISIVQMAPVSAMVRMYIFFASFYY+WKSYVHIMDGCTSSTCMMCYKRNRATRVE Sbjct 2340 WLMWFIISIVQMAPVSAMVRMYIFFASFYYIWKSYVHIMDGCTSSTCMMCYKRNRATRVE 2399 Query 2394 CTTIVNGVKRSFYVYANGGRGFCKAHNWNCLNCDTFCAGSTFISDEVARDLSLQFKRPIN 2453 CTTIVNG+KRSFYVYANGGRGFCK HNWNCLNCDTFC GSTFISDEVARDLSLQFKRPIN Sbjct 2400 CTTIVNGMKRSFYVYANGGRGFCKTHNWNCLNCDTFCTGSTFISDEVARDLSLQFKRPIN 2459 Query 2454 PTDQSAYVVDSVTVKNGALHLYFDKAGQKTYERHPLSHFVNLDNLRANNTKGSLPINVIV 2513 PTDQS+Y+VDSV VKNGALHLYFDKAGQKTYERHPLSHFVNLDNLRANNTKGSLPINVIV Sbjct 2460 PTDQSSYIVDSVAVKNGALHLYFDKAGQKTYERHPLSHFVNLDNLRANNTKGSLPINVIV 2519 Query 2514 FDGKSKCEESAAKSASVYYSQLMCQPILLLDQALVSDVGDSTEVSVKMFDAYVDTFSATF 2573 FDGKSKC+ESA+KSASVYYSQLMCQPILLLDQALVSDVGDSTEVSVKMFDAYVDTFSATF Sbjct 2520 FDGKSKCDESASKSASVYYSQLMCQPILLLDQALVSDVGDSTEVSVKMFDAYVDTFSATF 2579 Query 2574 SVPMEKLKALVATAHSELAKGVALDGVLSTFVSAARQGVVDTDVDTKDVIECLKLSHHSD 2633 SVPMEKLKALVATAHSELAKGVALDGVLSTFVSAARQGVVDTDVDTKDVIECLKLSHHSD Sbjct 2580 SVPMEKLKALVATAHSELAKGVALDGVLSTFVSAARQGVVDTDVDTKDVIECLKLSHHSD 2639 Query 2634 IEVTGDSCNNFMLTYNKVENMTPRDLGACIDCNARHINAQVAKSHNVSLVWNVKDYMSLS 2693 +EVTGDSCNNFMLTYNKVENMTPRDLGACIDCNARHINAQVAKSHNVSL+WNVKDYMSLS Sbjct 2640 LEVTGDSCNNFMLTYNKVENMTPRDLGACIDCNARHINAQVAKSHNVSLIWNVKDYMSLS 2699 Query 2694 EQLRKQIRSAAKKNNIPFRLTCATTRQVVNVITTKISLKGGKVVSTWFKLLLKVTLLCVL 2753 EQLRKQIRSAAKKNNIPFRLTCATTRQVVNVITTKISLKGGK+VST FKL+LK TLLCVL Sbjct 2700 EQLRKQIRSAAKKNNIPFRLTCATTRQVVNVITTKISLKGGKIVSTCFKLMLKATLLCVL 2759 Query 2754 AALFCYVIMPVHSLSVHDGYTNEIIGYKAIQDGVTRDIVSTDDCFANKHAGFDSWFSQRG 2813 AAL CY++MPVH+LS+HDGYTNEIIGYKAIQDGVTRDI+STDDCFANKHAGFD+WFSQRG Sbjct 2760 AALVCYIVMPVHTLSIHDGYTNEIIGYKAIQDGVTRDIISTDDCFANKHAGFDAWFSQRG 2819 Query 2814 GSYRNDKNCPVVAAIITREIGFIVPGLPGTVLRALNGDFLHFLPRVFSAVGNICYTPSKL 2873 GSY+NDK+CPVVAAIITREIGFIVPGLPGTVLRA+NGDFLHFLPRVFSAVGNICYTPSKL Sbjct 2820 GSYKNDKSCPVVAAIITREIGFIVPGLPGTVLRAINGDFLHFLPRVFSAVGNICYTPSKL 2879 Query 2874 IEYSDFATSACVLAAECTIFKDAMGKPVPYCYDTNLLEGSISYSELRPDTRYVLMDGSII 2933 IEYSDFATSACVLAAECTIFKDAMGKPVPYCYDTNLLEGSISYSELRPDTRYVLMDGSII Sbjct 2880 IEYSDFATSACVLAAECTIFKDAMGKPVPYCYDTNLLEGSISYSELRPDTRYVLMDGSII 2939 Query 2934 QFPNTYLEGSVRVVTTFDAEYCRHGTCERSEVGVCLSTSGRWVLNNEHYRALPGVFCGVD 2993 QFPNTYLEGSVRVVTTFDAEYCRHGTCERSEVG+CLSTSGRWVLNNEHYRAL GVFCGVD Sbjct 2940 QFPNTYLEGSVRVVTTFDAEYCRHGTCERSEVGICLSTSGRWVLNNEHYRALSGVFCGVD 2999 Query 2994 AMNLIANIFTPLVQPVGALDVSASVVAGGIIAILVTCAAYYFMKFRRAFGEYNHVVAANA 3053 AMNLIANIFTPLVQPVGALDVSASVVAGGIIAILVTCAAYYFMKFRR FGEYNHVVAANA Sbjct 3000 AMNLIANIFTPLVQPVGALDVSASVVAGGIIAILVTCAAYYFMKFRRVFGEYNHVVAANA 3059 Query 3054 LLFLMSFTILCLAPAYSFLPGVYSIFYLYLTFYFTNDVSFLAHLQWFAMFSPIVPFWITA 3113 LLFLMSFTILCL PAYSFLPGVYS+FYLYLTFYFTNDVSFLAHLQWFAMFSPIVPFWITA Sbjct 3060 LLFLMSFTILCLVPAYSFLPGVYSVFYLYLTFYFTNDVSFLAHLQWFAMFSPIVPFWITA 3119 Query 3114 IYVFCISLKHFHWFFSNYLKKRVMFNGVTFSTFEEAALCTFLLNKEMYLRLRSETLLPLT 3173 IYVFCISLKH HWFF+NYL+KRVMFNGVTFSTFEEAALCTFLLNKEMYL+LRSETLLPLT Sbjct 3120 IYVFCISLKHCHWFFNNYLRKRVMFNGVTFSTFEEAALCTFLLNKEMYLKLRSETLLPLT 3179 Query 3174 QYNRYLALYNKYKYFSGALDTTSYREAACCHLAKALNDFSNSGADVLYQPPQTSITSAVL 3233 QYNRYLALYNKYKYFSGALDTTSYREAACCHLAKALNDFSNSGADVLYQPPQTSITSAVL Sbjct 3180 QYNRYLALYNKYKYFSGALDTTSYREAACCHLAKALNDFSNSGADVLYQPPQTSITSAVL 3239 Query 3234 QSGFRKMAFPSGKVEGCMVQVTCGTTTLNGLWLDDTVYCPRHVVCTAEDMLNPNYDDLLI 3293 QSGFRKMAFPSGKVEGCMVQVTCGTTTLNGLWLDDTVYCPRHV+CTAEDMLNPNY+DLLI Sbjct 3240 QSGFRKMAFPSGKVEGCMVQVTCGTTTLNGLWLDDTVYCPRHVICTAEDMLNPNYEDLLI 3299 Query 3294 RKSNHSFLVQAGNVQLRVIGHSMQNCLLRLKVDTSNPKTPKYKFVRIQPGQTFSVLACYN 3353 RKSNHSFLVQAGNVQLRVIGHSMQNCLLRLKVDTSNPKTPKYKFVRIQPGQTFSVLACYN Sbjct 3300 RKSNHSFLVQAGNVQLRVIGHSMQNCLLRLKVDTSNPKTPKYKFVRIQPGQTFSVLACYN 3359 Query 3354 GSPSGVYQCAMRPNHTIKGSFLNGSCGSVGFNIDYDCVSFCYMHHMELPTGVHAGTDLEG 3413 GSPSGVYQCAMRPNHTIKGSFLNGSCGSVGFNIDYDCVSFCYMHHMELPTGVHAGTDLEG Sbjct 3360 GSPSGVYQCAMRPNHTIKGSFLNGSCGSVGFNIDYDCVSFCYMHHMELPTGVHAGTDLEG 3419 Query 3414 KFYGPFVDRQTAQAAGTDTTITLNVLAWLYAAVINGDRWFLNRFTTTLNDFNLVAMKYNY 3473 KFYGPFVDRQTAQAAGTDTTITLNVLAWLYAAVINGDRWFLNRFTTTLNDFNLVAMKYNY Sbjct 3420 KFYGPFVDRQTAQAAGTDTTITLNVLAWLYAAVINGDRWFLNRFTTTLNDFNLVAMKYNY 3479 Query 3474 EPLTQDHVDILGPLSAQTGIAVLDMCAALKELLQNGMNGRTILGSTILEDEFTPFDVVRQ 3533 EPLTQDHVDILGPLSAQTGIAVLDMCAALKELLQNGMNGRTILGSTILEDEFTPFDVVRQ Sbjct 3480 EPLTQDHVDILGPLSAQTGIAVLDMCAALKELLQNGMNGRTILGSTILEDEFTPFDVVRQ 3539 Query 3534 CSGVTFQGKFKKIVKGTHHWMLLTFLTSLLILVQSTQWSLFFFVYENAFLPFALGIMAVA 3593 CSGVTFQGKFKKIVKGTHHWMLLTFLTSLLILVQSTQWSLFFFVYENAFLPF LGIMA+A Sbjct 3540 CSGVTFQGKFKKIVKGTHHWMLLTFLTSLLILVQSTQWSLFFFVYENAFLPFTLGIMAIA 3599 Query 3594 ACAMLLVKHKHAFLCLFLLPSLATVAYFNMVYMPASWVMRIMTWLELADTSLSGYRLKDC 3653 ACAMLLVKHKHAFLCLFLLPSLATVAYFNMVYMPASWVMRIMTWLELADTSLSGYRLKDC Sbjct 3600 ACAMLLVKHKHAFLCLFLLPSLATVAYFNMVYMPASWVMRIMTWLELADTSLSGYRLKDC 3659 Query 3654 VMYASALVLLILMTARTVYDDAARRVWTLMNVITLVYKVYYGNSLDQAISMWALVISVTS 3713 VMYASALVLLILMTARTVYDDAARRVWTLMNVITLVYKVYYGN+LDQAISMWALVISVTS Sbjct 3660 VMYASALVLLILMTARTVYDDAARRVWTLMNVITLVYKVYYGNALDQAISMWALVISVTS 3719 Query 3714 NYSGVVTTIMFLARAIVFVCVEYYPLLFITGNTLQCIMLVYCFLGYCCCCYFGLFCLLNR 3773 NYSGVVTTIMFLARAIVFVCVEYYPLLFITGNTLQCIMLVYCFLGYCCCCYFGLFCLLNR Sbjct 3720 NYSGVVTTIMFLARAIVFVCVEYYPLLFITGNTLQCIMLVYCFLGYCCCCYFGLFCLLNR 3779 Query 3774 YFRLTLGVYDYLVSTQEFRYMNSQGLLPPKSSIDAFKLNIKLLGIGGKPCIKVATVQSKM 3833 YFRLTLGVYDYLVSTQEFRYMNSQGLLPPKSSIDAFKLNIKLLGIGGKPCIKVATVQSKM Sbjct 3780 YFRLTLGVYDYLVSTQEFRYMNSQGLLPPKSSIDAFKLNIKLLGIGGKPCIKVATVQSKM 3839 Query 3834 SDVKCTSVVLLSVLQQLRVESSSKLWAQCVQLHNDILLAKDTTEAFEKMVSLLSVLLSMQ 3893 SDVKCTSVVLLSVLQQLRVESSSKLWAQCVQLHNDILLAKDTTEAFEKMVSLLSVLLSMQ Sbjct 3840 SDVKCTSVVLLSVLQQLRVESSSKLWAQCVQLHNDILLAKDTTEAFEKMVSLLSVLLSMQ 3899 Query 3894 GAVDINKLCEEMLDNRATLQAIASEFSSLPSYAAYATAQEAYEQAVSNGDSEVVLKKLKK 3953 GAVDIN+LCEEMLDNRATLQAIASEFSSLPSYAAYATAQEAYEQAV+NGDSEVVLKKLKK Sbjct 3900 GAVDINRLCEEMLDNRATLQAIASEFSSLPSYAAYATAQEAYEQAVANGDSEVVLKKLKK 3959 Query 3954 SLNVAKSEFDHDAAMQRKLEKMADQAMTQMYKQARSEDKRAKVTSAMQTMLFTMLRKLDN 4013 SLNVAKSEFD DAAMQRKLEKMADQAMTQMYKQARSEDKRAKVTSAMQTMLFTMLRKLDN Sbjct 3960 SLNVAKSEFDRDAAMQRKLEKMADQAMTQMYKQARSEDKRAKVTSAMQTMLFTMLRKLDN 4019 Query 4014 DALNNIINNARDGCVPLNIIPLTTAAKLMVVVPDYGTYKNTCDGNTFTYASALWEIQQVV 4073 DALNNIINNARDGCVPLNIIPLTTAAKLMVVVPDYGTYKNTCDGNTFTYASALWEIQQVV Sbjct 4020 DALNNIINNARDGCVPLNIIPLTTAAKLMVVVPDYGTYKNTCDGNTFTYASALWEIQQVV 4079 Query 4074 DADSKIVQLSEINMDNSPNLAWPLIVTALRANSAVKLQNNELSPVALRQMSCAAGTTQTA 4133 DADSKIVQLSEINMDNSPNLAWPLIVTALRANSAVKLQNNELSPVALRQMSCAAGTTQTA Sbjct 4080 DADSKIVQLSEINMDNSPNLAWPLIVTALRANSAVKLQNNELSPVALRQMSCAAGTTQTA 4139 Query 4134 CTDDNALAYYNNAKGGRFVLALLSDHQDLKWARFPKSDGTGTIYTELEPPCRFVTDTPKG 4193 CTDDNALAYYNN+KGGRFVLALLSDHQDLKWARFPKSDGTGTIYTELEPPCRFVTDTPKG Sbjct 4140 CTDDNALAYYNNSKGGRFVLALLSDHQDLKWARFPKSDGTGTIYTELEPPCRFVTDTPKG 4199 Query 4194 PKVKYLYFIKGLNNLNRGMVLGSLAATVRLQAGNATEVPANSTVLSFCAFAVDPAKAYKD 4253 PKVKYLYFIKGLNNLNRGMVLGSLAATVRLQAGNATEVPANSTVLSFCAFAVDPAKAYKD Sbjct 4200 PKVKYLYFIKGLNNLNRGMVLGSLAATVRLQAGNATEVPANSTVLSFCAFAVDPAKAYKD 4259 Query 4254 YLASGGQPITNCVKMLCTHTGTGQAITVTPEANMDQESFGGASCCLYCRCHIDHPNPKGF 4313 YLASGGQPITNCVKMLCTHTGTGQAITVTPEANMDQESFGGASCCLYCRCHIDHPNPKGF Sbjct 4260 YLASGGQPITNCVKMLCTHTGTGQAITVTPEANMDQESFGGASCCLYCRCHIDHPNPKGF 4319 Query 4314 CDLKGKYVQIPTTCANDPVGFTLRNTVCTVCGMWKGYGCSCDQLREPMMQSADASTFLNG 4373 CDLKGKYVQIPTTCANDPVGFTLRNTVCTVCGMWKGYGCSCDQLREP+MQSADASTFLNG Sbjct 4320 CDLKGKYVQIPTTCANDPVGFTLRNTVCTVCGMWKGYGCSCDQLREPLMQSADASTFLNG 4379 Query 4374 FAV 4376 FAV Sbjct 4380 FAV 4382 >RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Host translation inhibitor nsp1; AltName: Full=Leader protein; AltName: Full=Non-structural protein 1; Short=nsp1; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p65 homolog; Contains: RecName: Full=Papain-like protease nsp3; Short=PL-PRO; AltName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=PL2-PRO; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; Contains: RecName: Full=3C-like proteinase nsp5; Short=3CL-PRO; Short=3CLp; AltName: Full=Main protease; Short=Mpro; AltName: Full=Non-structural protein 5; Short=nsp5; AltName: Full=SARS coronavirus main proteinase; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; Contains: RecName: Full=Viral protein genome-linked nsp9; AltName: Full=Non-structural protein 9; Short=nsp9; AltName: Full=RNA-capping enzyme subunit nsp9; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; Contains: RecName: Full=RNA-directed RNA polymerase nsp12; Short=Pol; Short=RdRp; AltName: Full=Non-structural protein 12; Short=nsp12; Contains: RecName: Full=Helicase nsp13; Short=Hel; AltName: Full=Non-structural protein 13; Short=nsp13; Contains: RecName: Full=Guanine-N7 methyltransferase nsp14; AltName: Full=Non-structural protein 14; Short=nsp14; AltName: Full=Proofreading exoribonuclease nsp14; Short=ExoN; Contains: RecName: Full=Uridylate-specific endoribonuclease nsp15; AltName: Full=NendoU; AltName: Full=Non-structural protein 15; Short=nsp15; Contains: RecName: Full=2'-O-methyltransferase nsp16; AltName: Full=Non-structural protein 16; Short=nsp16 [Severe acute respiratory syndrome-related coronavirus] Sequence ID: P0C6X7.1 Length: 7073 Range 1: 1 to 4378 Score:8561 bits(22214), Expect:0.0, Method:Compositional matrix adjust., Identities:4118/4379(94%), Positives:4256/4379(97%), Gaps:8/4379(0%) Query 1 MESLVLGVNEKTHVQLSLPVLQVRDVLVRGFGDSVEEALSEAREHLKNGTCGLVELEKGV 60 MESLVLGVNEKTHVQLSLPVLQVRDVLVRGFGDSVEEALSEAREHLKNGTCGLVELEKGV Sbjct 1 MESLVLGVNEKTHVQLSLPVLQVRDVLVRGFGDSVEEALSEAREHLKNGTCGLVELEKGV 60 Query 61 LPQLEQPYVFIKRSDALSTNHGHKVVELVAELDGIQFGRSGITLGVLVPHVGETPIAYRN 120 LPQLEQPYVFIKRSDALSTNHGHKVVELVAE+DGIQ+GRSGITLGVLVPHVGETPIAYRN Sbjct 61 LPQLEQPYVFIKRSDALSTNHGHKVVELVAEMDGIQYGRSGITLGVLVPHVGETPIAYRN 120 Query 121 VLLRKNGNKGAGGHSFGIDLKSYDLGDELGTDPIEDYEQNWNTKHGSGALRELTRELNGG 180 VLLRKNGNKGAGGHS+GIDLKSYDLGDELGTDPIEDYEQNWNTKHGSGALRELTRELNGG Sbjct 121 VLLRKNGNKGAGGHSYGIDLKSYDLGDELGTDPIEDYEQNWNTKHGSGALRELTRELNGG 180 Query 181 VVTRYVDNNFCGPDGYPLECIKDFLARAGKSMCTLSEQLDYIESKRGVYCCREHEHEIVW 240 VTRYVDNNFCGPDGYPL+CIKDFLARAGKSMCTLSEQLDYIESKRGVYCCR+HEHEI W Sbjct 181 AVTRYVDNNFCGPDGYPLDCIKDFLARAGKSMCTLSEQLDYIESKRGVYCCRDHEHEIAW 240 Query 241 FTERSEKSYEHQTPFEIKSAKKFDTFKGECPKFVFPLNSKVKVIQPRVEKKKTEGFMGRI 300 FTERS+KSYEHQTPFEIKSAKKFDTFKGECPKFVFPLNSKVKVIQPRVEKKKTEGFMGRI Sbjct 241 FTERSDKSYEHQTPFEIKSAKKFDTFKGECPKFVFPLNSKVKVIQPRVEKKKTEGFMGRI 300 Query 301 RSVYPVATPQECNDMHLSTLMKCNHCDEVSWQTCDFLKATCEQCGTENLVCEGPTTCGYL 360 RSVYPVA+PQECN+MHLSTLMKCNHCDEVSWQTCDFLKATCE CGTENLV EGPTTCGYL Sbjct 301 RSVYPVASPQECNNMHLSTLMKCNHCDEVSWQTCDFLKATCEHCGTENLVIEGPTTCGYL 360 Query 361 PTNAVVKMPCPACQDPEVGPEHSVADYHNHSNIETRLRKGGRTKCFGGCVFSYVGCYNKR 420 PTNAVVKMPCPACQDPE+GPEHSVADYHNHSNIETRLRKGGRT+CFGGCVF+YVGCYNKR Sbjct 361 PTNAVVKMPCPACQDPEIGPEHSVADYHNHSNIETRLRKGGRTRCFGGCVFAYVGCYNKR 420 Query 421 AYWVPRASANIGANHTGITGENVETLNEDLLEILNRERVNINIVGDFRFNEEVAIILASF 480 AYWVPRASA+IG+ HTGITG+NVETLNEDLLEIL+RERVNINIVGDF NEEVAIILASF Sbjct 421 AYWVPRASADIGSGHTGITGDNVETLNEDLLEILSRERVNINIVGDFHLNEEVAIILASF 480 Query 481 SASPSAFIETVKGLDYKSFKVIVESCGNYKVTNGKPVTGAWNIGQQRSILTPLCGFPSQA 540 SAS SAFI+T+K LDYKSFK IVESCGNYKVT GKPV GAWNIGQQRS+LTPLCGFPSQA Sbjct 481 SASTSAFIDTIKSLDYKSFKTIVESCGNYKVTKGKPVKGAWNIGQQRSVLTPLCGFPSQA 540 Query 541 AGVIRSIFSRTLDAANHSILDLQRAAVTTLDGISEQSLRLVDAMVYTSDLLTNSVVVMAY 600 AGVIRSIF+RTLDAANHSI DLQRAAVT LDGISEQSLRLVDAMVYTSDLLTNSV++MAY Sbjct 541 AGVIRSIFARTLDAANHSIPDLQRAAVTILDGISEQSLRLVDAMVYTSDLLTNSVIIMAY 600 Query 601 VTGGLVQQTMQWLSNMLGTAVDKLKPVFTWVEAKLSAGVEFLRDAWEILKFLITGVFDVI 660 VTGGLVQQT QWLSN+LGT V+KL+P+F W+EAKLSAGVEFL+DAWEILKFLITGVFD++ Sbjct 601 VTGGLVQQTSQWLSNLLGTTVEKLRPIFEWIEAKLSAGVEFLKDAWEILKFLITGVFDIV 660 Query 661 KGQIQVATDNIKECVKIFLGVVNKALEMCLDQVTIAGTKLRALNLGEVFIAQSRGLYRQC 720 KGQIQVA+DNIK+CVK F+ VVNKALEMC+DQVTIAG KLR+LNLGEVFIAQS+GLYRQC Sbjct 661 KGQIQVASDNIKDCVKCFIDVVNKALEMCIDQVTIAGAKLRSLNLGEVFIAQSKGLYRQC 720 Query 721 IRGKEQLQLLMPLKAPKEVTFLEGDAHDTVLTSEEVVLKSGELEALETPIDSFTSGAVVG 780 IRGKEQLQLLMPLKAPKEVTFLEGD+HDTVLTSEEVVLK+GELEALETP+DSFT+GA+VG Sbjct 721 IRGKEQLQLLMPLKAPKEVTFLEGDSHDTVLTSEEVVLKNGELEALETPVDSFTNGAIVG 780 Query 781 TPVCINGLMLLELENKEQYCALSPGLLATNNVFRLKGGAPVKGVTFGEDTVLEVQGYKNV 840 TPVC+NGLMLLE+++KEQYCALSPGLLATNNVFRLKGGAP+KGVTFGEDTV EVQGYKNV Sbjct 781 TPVCVNGLMLLEIKDKEQYCALSPGLLATNNVFRLKGGAPIKGVTFGEDTVWEVQGYKNV 840 Query 841 KITFELDVRVDKVLNEKCSVYTVESGTEVTEFACVVAEAVVKTLQPVSDLLTPMGIDLDE 900 +ITFELD RVDKVLNEKCSVYTVESGTEVTEFACVVAEAVVKTLQPVSDLLT MGIDLDE Sbjct 841 RITFELDERVDKVLNEKCSVYTVESGTEVTEFACVVAEAVVKTLQPVSDLLTNMGIDLDE 900 Query 901 WSVATFYLFDDAGEEKLSSRMYCSFYPPDEEEDCEECEDEEETCE---HEYGTEDDYKGL 957 WSVATFYLFDDAGEE SSRMYCSFYPPDEEE+ + +EEE E HEYGTEDDY+GL Sbjct 901 WSVATFYLFDDAGEENFSSRMYCSFYPPDEEEEDDAECEEEEIDETCEHEYGTEDDYQGL 960 Query 958 PLEFGASTETPHVEEEEEEEDWLDDAIEAEP---EPEPLPEEPVNQFVGYLKLTDNVAIK 1014 PLEFGAS ET VEEEEEE DWLDD E EPEP PEEPVNQF GYLKLTDNVAIK Sbjct 961 PLEFGASAETVRVEEEEEE-DWLDDTTEQSEIEPEPEPTPEEPVNQFTGYLKLTDNVAIK 1019 Query 1015 CIDIVKEAQSAKPTVIVNAANTHLKHGGGVAGALNKATNGAMQNESDEYIRQNGPLTVGG 1074 C+DIVKEAQSA P VIVNAAN HLKHGGGVAGALNKATNGAMQ ESD+YI+ NGPLTVGG Sbjct 1020 CVDIVKEAQSANPMVIVNAANIHLKHGGGVAGALNKATNGAMQKESDDYIKLNGPLTVGG 1079 Query 1075 SCLLSGHNLAEKCLHVVGPNLNAGEDVQLLKRAYENFNSQDVLLAPLLSAGIFGAKPLQS 1134 SCLLSGHNLA+KCLHVVGPNLNAGED+QLLK AYENFNSQD+LLAPLLSAGIFGAKPLQS Sbjct 1080 SCLLSGHNLAKKCLHVVGPNLNAGEDIQLLKAAYENFNSQDILLAPLLSAGIFGAKPLQS 1139 Query 1135 LKMCVEIVRTQVYLAVNDKSLYDQIVLDYLDSLKPKVESPNKEEEPKLEEPKAVQ-PVAE 1193 L++CV+ VRTQVY+AVNDK+LY+Q+V+DYLD+LKP+VE+P +EE P E+ K + V + Sbjct 1140 LQVCVQTVRTQVYIAVNDKALYEQVVMDYLDNLKPRVEAPKQEEPPNTEDSKTEEKSVVQ 1199 Query 1194 KPVDVKPKIKACIDEVTTTLEETKFLTNKLLLFADINGKLYQDSQNMLRGEDMSFLEKDA 1253 KPVDVKPKIKACIDEVTTTLEETKFLTNKLLLFADINGKLY DSQNMLRGEDMSFLEKDA Sbjct 1200 KPVDVKPKIKACIDEVTTTLEETKFLTNKLLLFADINGKLYHDSQNMLRGEDMSFLEKDA 1259 Query 1254 PYIVGDVITSGDITCVIIPAKKSGGTTEMLARALKEVPVAEYITTYPGQGCAGYTLEEAK 1313 PY+VGDVITSGDITCV+IP+KK+GGTTEML+RALK+VPV EYITTYPGQGCAGYTLEEAK Sbjct 1260 PYMVGDVITSGDITCVVIPSKKAGGTTEMLSRALKKVPVDEYITTYPGQGCAGYTLEEAK 1319 Query 1314 TALKKCKSAFYVLPSETPNEKEEVLGTVSWNLREMLAHAEETRKLMPICLDVRAIMATIQ 1373 TALKKCKSAFYVLPSE PN KEE+LGTVSWNLREMLAHAEETRKLMPIC+DVRAIMATIQ Sbjct 1320 TALKKCKSAFYVLPSEAPNAKEEILGTVSWNLREMLAHAEETRKLMPICMDVRAIMATIQ 1379 Query 1374 RKYKGIKVQEGIVDYGVRFFFYTSKEPVASIITKLNSLNEPLVTMPIGYVTHGLNLEEAA 1433 RKYKGIK+QEGIVDYGVRFFFYTSKEPVASIITKLNSLNEPLVTMPIGYVTHG NLEEAA Sbjct 1380 RKYKGIKIQEGIVDYGVRFFFYTSKEPVASIITKLNSLNEPLVTMPIGYVTHGFNLEEAA 1439 Query 1434 RCMRSLKAPAVVSVSSPDAVTAYNGYLTSSSKTPEEYFVETTSLAGSYRDWSYSGQRTEL 1493 RCMRSLKAPAVVSVSSPDAVT YNGYLTSSSKT EE+FVET SLAGSYRDWSYSGQRTEL Sbjct 1440 RCMRSLKAPAVVSVSSPDAVTTYNGYLTSSSKTSEEHFVETVSLAGSYRDWSYSGQRTEL 1499 Query 1494 GVEFLKRGDKIVYHTTGSPIEFHLDGEVLPLDKLKSLLSLREVKTIKVFTTVDNTNLHTH 1553 GVEFLKRGDKIVYHT SP+EFHLDGEVL LDKLKSLLSLREVKTIKVFTTVDNTNLHT Sbjct 1500 GVEFLKRGDKIVYHTLESPVEFHLDGEVLSLDKLKSLLSLREVKTIKVFTTVDNTNLHTQ 1559 Query 1554 IVDMSMTYGQQFGPTYLDGADVTKIKPHVNHEGKTFFVLPSDDTLRSEAFEYYHTIDESF 1613 +VDMSMTYGQQFGPTYLDGADVTKIKPHVNHEGKTFFVLPSDDTLRSEAFEYYHT+DESF Sbjct 1560 LVDMSMTYGQQFGPTYLDGADVTKIKPHVNHEGKTFFVLPSDDTLRSEAFEYYHTLDESF 1619 Query 1614 LGRYMSALNHTKKWKFPQVGGLTSIKWADNNCYLSSVLLALQQVEVKFNAPALQEAYYRA 1673 LGRYMSALNHTKKWKFPQVGGLTSIKWADNNCYLSSVLLALQQ+EVKFNAPALQEAYYRA Sbjct 1620 LGRYMSALNHTKKWKFPQVGGLTSIKWADNNCYLSSVLLALQQLEVKFNAPALQEAYYRA 1679 Query 1674 RAGDAANFCALILAYSNKTVGELGDVRETMTHLLQHANLESAKRVLNVVCKHCGQKTTTL 1733 RAGDAANFCALILAYSNKTVGELGDVRETMTHLLQHANLESAKRVLNVVCKHCGQKTTTL Sbjct 1680 RAGDAANFCALILAYSNKTVGELGDVRETMTHLLQHANLESAKRVLNVVCKHCGQKTTTL 1739 Query 1734 KGVEAVMYMGTLSYDELKTGVSIPCVCGRNATQYLVQQESSFVMMSAPPAEYKLQQGAFL 1793 GVEAVMYMGTLSYD LKTGVSIPCVCGR+ATQYLVQQESSFVMMSAPPAEYKLQQG FL Sbjct 1740 TGVEAVMYMGTLSYDNLKTGVSIPCVCGRDATQYLVQQESSFVMMSAPPAEYKLQQGTFL 1799 Query 1794 CANEYTGNYQCGHYTHITAKETLYRVDGAHLTKMSEYKGPVTDVFYKETSYTTAIKPVSY 1853 CANEYTGNYQCGHYTHITAKETLYR+DGAHLTKMSEYKGPVTDVFYKETSYTT IKPVSY Sbjct 1800 CANEYTGNYQCGHYTHITAKETLYRIDGAHLTKMSEYKGPVTDVFYKETSYTTTIKPVSY 1859 Query 1854 KLDGVTYTEIEPKLDGYYKKGNAYYTEQPIDLVPTQPMPNASFDNFKLTCSNTKFADDLN 1913 KLDGVTYTEIEPKLDGYYKK NAYYTEQPIDLVPTQP+PNASFDNFKLTCSNTKFADDLN Sbjct 1860 KLDGVTYTEIEPKLDGYYKKDNAYYTEQPIDLVPTQPLPNASFDNFKLTCSNTKFADDLN 1919 Query 1914 QMTGFKKPASRELTVTFFPDLNGDVVAIDYRHYSTSFKKGAKLVHKPILWHINQTTNKTT 1973 QMTGF KPASREL+VTFFPDLNGDVVAIDYRHYS SFKKGAKL+HKPI+WHINQ T KTT Sbjct 1920 QMTGFTKPASRELSVTFFPDLNGDVVAIDYRHYSASFKKGAKLLHKPIVWHINQATTKTT 1979 Query 1974 YKPNIWCLRCLWSTKPVDTSNSFEVLVVEDTQGMDNLACESQTTTSEEVVENPTVQKEII 2033 +KPN WCLRCLWSTKPVDTSNSFEVL VEDTQGMDNLACESQ TSEEVVENPT+QKE+I Sbjct 1980 FKPNTWCLRCLWSTKPVDTSNSFEVLAVEDTQGMDNLACESQQPTSEEVVENPTIQKEVI 2039 Query 2034 ECDVKTTEVVGNVILKPSEEGVKVTQELGHEDLMAAYVEETSITIKKPNELSLALGLKTL 2093 ECDVKTTEVVGNVILKPS+EGVKVTQELGHEDLMAAYVE TSITIKKPNELSLALGLKT+ Sbjct 2040 ECDVKTTEVVGNVILKPSDEGVKVTQELGHEDLMAAYVENTSITIKKPNELSLALGLKTI 2099 Query 2094 ATHGAAAINSVPWSKILAYVKPFLGQTAVITSNCIKKCVQRVFSNYMPYVITLLFQLCTF 2153 ATHG AAINSVPWSKILAYVKPFLGQ A+ TSNC K+ QRVF+NYMPYV TLLFQLCTF Sbjct 2100 ATHGIAAINSVPWSKILAYVKPFLGQAAITTSNCAKRLAQRVFNNYMPYVFTLLFQLCTF 2159 Query 2154 TKSTNSRIKASLPTTIAKNSVKSVAKLCLDVCINYVKSPKFSKLFTIVMWLLLLSICLGS 2213 TKSTNSRI+ASLPTTIAKNSVKSVAKLCLD INYVKSPKFSKLFTI MWLLLLSICLGS Sbjct 2160 TKSTNSRIRASLPTTIAKNSVKSVAKLCLDAGINYVKSPKFSKLFTIAMWLLLLSICLGS 2219 Query 2214 LTYVTAVLGVCLSSLGVPSYCDGVRELYINSSNVTTMDFCQGYFPCSVCLSGLDSLDSYP 2273 L VTA GV LS+ G PSYC+GVRELY+NSSNVTTMDFC+G FPCS+CLSGLDSLDSYP Sbjct 2220 LICVTAAFGVLLSNFGAPSYCNGVRELYLNSSNVTTMDFCEGSFPCSICLSGLDSLDSYP 2279 Query 2274 ALETIQVTISSYKLDLTFLGLAAEWLLAYMLFTKFFYLLGLSAIMQAFFGYFASHFISNS 2333 ALETIQVTISSYKLDLT LGLAAEW+LAYMLFTKFFYLLGLSAIMQ FFGYFASHFISNS Sbjct 2280 ALETIQVTISSYKLDLTILGLAAEWVLAYMLFTKFFYLLGLSAIMQVFFGYFASHFISNS 2339 Query 2334 WLMWFIISIVQMAPVSAMVRMYIFFASFYYVWKSYVHIMDGCTSSTCMMCYKRNRATRVE 2393 WLMWFIISIVQMAPVSAMVRMYIFFASFYY+WKSYVHIMDGCTSSTCMMCYKRNRATRVE Sbjct 2340 WLMWFIISIVQMAPVSAMVRMYIFFASFYYIWKSYVHIMDGCTSSTCMMCYKRNRATRVE 2399 Query 2394 CTTIVNGVKRSFYVYANGGRGFCKAHNWNCLNCDTFCAGSTFISDEVARDLSLQFKRPIN 2453 CTTIVNG+KRSFYVYANGGRGFCK HNWNCLNCDTFC GSTFISDEVARDLSLQFKRPIN Sbjct 2400 CTTIVNGMKRSFYVYANGGRGFCKTHNWNCLNCDTFCTGSTFISDEVARDLSLQFKRPIN 2459 Query 2454 PTDQSAYVVDSVTVKNGALHLYFDKAGQKTYERHPLSHFVNLDNLRANNTKGSLPINVIV 2513 PTDQS+Y+VDSV VKNGALHLYFDKAGQKTYERHPLSHFVNLDNLRANNTKGSLPINVIV Sbjct 2460 PTDQSSYIVDSVAVKNGALHLYFDKAGQKTYERHPLSHFVNLDNLRANNTKGSLPINVIV 2519 Query 2514 FDGKSKCEESAAKSASVYYSQLMCQPILLLDQALVSDVGDSTEVSVKMFDAYVDTFSATF 2573 FDGKSKC+ESA+KSASVYYSQLMCQPILLLDQALVSDVGDSTEVSVKMFDAYVDTFSATF Sbjct 2520 FDGKSKCDESASKSASVYYSQLMCQPILLLDQALVSDVGDSTEVSVKMFDAYVDTFSATF 2579 Query 2574 SVPMEKLKALVATAHSELAKGVALDGVLSTFVSAARQGVVDTDVDTKDVIECLKLSHHSD 2633 SVPMEKLKALVATAHSELAKGVALDGVLSTFVSAARQGVVDTDVDTKDVIECLKLSHHSD Sbjct 2580 SVPMEKLKALVATAHSELAKGVALDGVLSTFVSAARQGVVDTDVDTKDVIECLKLSHHSD 2639 Query 2634 IEVTGDSCNNFMLTYNKVENMTPRDLGACIDCNARHINAQVAKSHNVSLVWNVKDYMSLS 2693 +EVTGDSCNNFMLTYNKVENMTPRDLGACIDCNARHINAQVAKSHNVSL+WNVKDYMSLS Sbjct 2640 LEVTGDSCNNFMLTYNKVENMTPRDLGACIDCNARHINAQVAKSHNVSLIWNVKDYMSLS 2699 Query 2694 EQLRKQIRSAAKKNNIPFRLTCATTRQVVNVITTKISLKGGKVVSTWFKLLLKVTLLCVL 2753 EQLRKQIRSAAKKNNIPFRLTCATTRQVVNVITTKISLKGGK+VST FKL+LK TLLCVL Sbjct 2700 EQLRKQIRSAAKKNNIPFRLTCATTRQVVNVITTKISLKGGKIVSTCFKLMLKATLLCVL 2759 Query 2754 AALFCYVIMPVHSLSVHDGYTNEIIGYKAIQDGVTRDIVSTDDCFANKHAGFDSWFSQRG 2813 AAL CY++MPVH+LS+HDGYTNEIIGYKAIQDGVTRDI+STDDCFANKHAGFD+WFSQRG Sbjct 2760 AALVCYIVMPVHTLSIHDGYTNEIIGYKAIQDGVTRDIISTDDCFANKHAGFDAWFSQRG 2819 Query 2814 GSYRNDKNCPVVAAIITREIGFIVPGLPGTVLRALNGDFLHFLPRVFSAVGNICYTPSKL 2873 GSY+NDK+CPVVAAIITREIGFIVPGLPGTVLRA+NGDFLHFLPRVFSAVGNICYTPSKL Sbjct 2820 GSYKNDKSCPVVAAIITREIGFIVPGLPGTVLRAINGDFLHFLPRVFSAVGNICYTPSKL 2879 Query 2874 IEYSDFATSACVLAAECTIFKDAMGKPVPYCYDTNLLEGSISYSELRPDTRYVLMDGSII 2933 IEYSDFATSACVLAAECTIFKDAMGKPVPYCYDTNLLEGSISYSELRPDTRYVLMDGSII Sbjct 2880 IEYSDFATSACVLAAECTIFKDAMGKPVPYCYDTNLLEGSISYSELRPDTRYVLMDGSII 2939 Query 2934 QFPNTYLEGSVRVVTTFDAEYCRHGTCERSEVGVCLSTSGRWVLNNEHYRALPGVFCGVD 2993 QFPNTYLEGSVRVVTTFDAEYCRHGTCERSEVG+CLSTSGRWVLNNEHYRAL GVFCGVD Sbjct 2940 QFPNTYLEGSVRVVTTFDAEYCRHGTCERSEVGICLSTSGRWVLNNEHYRALSGVFCGVD 2999 Query 2994 AMNLIANIFTPLVQPVGALDVSASVVAGGIIAILVTCAAYYFMKFRRAFGEYNHVVAANA 3053 AMNLIANIFTPLVQPVGALDVSASVVAGGIIAILVTCAAYYFMKFRR FGEYNHVVAANA Sbjct 3000 AMNLIANIFTPLVQPVGALDVSASVVAGGIIAILVTCAAYYFMKFRRVFGEYNHVVAANA 3059 Query 3054 LLFLMSFTILCLAPAYSFLPGVYSIFYLYLTFYFTNDVSFLAHLQWFAMFSPIVPFWITA 3113 LLFLMSFTILCL PAYSFLPGVYS+FYLYLTFYFTNDVSFLAHLQWFAMFSPIVPFWITA Sbjct 3060 LLFLMSFTILCLVPAYSFLPGVYSVFYLYLTFYFTNDVSFLAHLQWFAMFSPIVPFWITA 3119 Query 3114 IYVFCISLKHFHWFFSNYLKKRVMFNGVTFSTFEEAALCTFLLNKEMYLRLRSETLLPLT 3173 IYVFCISLKH HWFF+NYL+KRVMFNGVTFSTFEEAALCTFLLNKEMYL+LRSETLLPLT Sbjct 3120 IYVFCISLKHCHWFFNNYLRKRVMFNGVTFSTFEEAALCTFLLNKEMYLKLRSETLLPLT 3179 Query 3174 QYNRYLALYNKYKYFSGALDTTSYREAACCHLAKALNDFSNSGADVLYQPPQTSITSAVL 3233 QYNRYLALYNKYKYFSGALDTTSYREAACCHLAKALNDFSNSGADVLYQPPQTSITSAVL Sbjct 3180 QYNRYLALYNKYKYFSGALDTTSYREAACCHLAKALNDFSNSGADVLYQPPQTSITSAVL 3239 Query 3234 QSGFRKMAFPSGKVEGCMVQVTCGTTTLNGLWLDDTVYCPRHVVCTAEDMLNPNYDDLLI 3293 QSGFRKMAFPSGKVEGCMVQVTCGTTTLNGLWLDDTVYCPRHV+CTAEDMLNPNY+DLLI Sbjct 3240 QSGFRKMAFPSGKVEGCMVQVTCGTTTLNGLWLDDTVYCPRHVICTAEDMLNPNYEDLLI 3299 Query 3294 RKSNHSFLVQAGNVQLRVIGHSMQNCLLRLKVDTSNPKTPKYKFVRIQPGQTFSVLACYN 3353 RKSNHSFLVQAGNVQLRVIGHSMQNCLLRLKVDTSNPKTPKYKFVRIQPGQTFSVLACYN Sbjct 3300 RKSNHSFLVQAGNVQLRVIGHSMQNCLLRLKVDTSNPKTPKYKFVRIQPGQTFSVLACYN 3359 Query 3354 GSPSGVYQCAMRPNHTIKGSFLNGSCGSVGFNIDYDCVSFCYMHHMELPTGVHAGTDLEG 3413 GSPSGVYQCAMRPNHTIKGSFLNGSCGSVGFNIDYDCVSFCYMHHMELPTGVHAGTDLEG Sbjct 3360 GSPSGVYQCAMRPNHTIKGSFLNGSCGSVGFNIDYDCVSFCYMHHMELPTGVHAGTDLEG 3419 Query 3414 KFYGPFVDRQTAQAAGTDTTITLNVLAWLYAAVINGDRWFLNRFTTTLNDFNLVAMKYNY 3473 KFYGPFVDRQTAQAAGTDTTITLNVLAWLYAAVINGDRWFLNRFTTTLNDFNLVAMKYNY Sbjct 3420 KFYGPFVDRQTAQAAGTDTTITLNVLAWLYAAVINGDRWFLNRFTTTLNDFNLVAMKYNY 3479 Query 3474 EPLTQDHVDILGPLSAQTGIAVLDMCAALKELLQNGMNGRTILGSTILEDEFTPFDVVRQ 3533 EPLTQDHVDILGPLSAQTGIAVLDMCAALKELLQNGMNGRTILGSTILEDEFTPFDVVRQ Sbjct 3480 EPLTQDHVDILGPLSAQTGIAVLDMCAALKELLQNGMNGRTILGSTILEDEFTPFDVVRQ 3539 Query 3534 CSGVTFQGKFKKIVKGTHHWMLLTFLTSLLILVQSTQWSLFFFVYENAFLPFALGIMAVA 3593 CSGVTFQGKFKKIVKGTHHWMLLTFLTSLLILVQSTQWSLFFFVYENAFLPF LGIMA+A Sbjct 3540 CSGVTFQGKFKKIVKGTHHWMLLTFLTSLLILVQSTQWSLFFFVYENAFLPFTLGIMAIA 3599 Query 3594 ACAMLLVKHKHAFLCLFLLPSLATVAYFNMVYMPASWVMRIMTWLELADTSLSGYRLKDC 3653 ACAMLLVKHKHAFLCLFLLPSLATVAYFNMVYMPASWVMRIMTWLELADTSLSGYRLKDC Sbjct 3600 ACAMLLVKHKHAFLCLFLLPSLATVAYFNMVYMPASWVMRIMTWLELADTSLSGYRLKDC 3659 Query 3654 VMYASALVLLILMTARTVYDDAARRVWTLMNVITLVYKVYYGNSLDQAISMWALVISVTS 3713 VMYASALVLLILMTARTVYDDAARRVWTLMNVITLVYKVYYGN+LDQAISMWALVISVTS Sbjct 3660 VMYASALVLLILMTARTVYDDAARRVWTLMNVITLVYKVYYGNALDQAISMWALVISVTS 3719 Query 3714 NYSGVVTTIMFLARAIVFVCVEYYPLLFITGNTLQCIMLVYCFLGYCCCCYFGLFCLLNR 3773 NYSGVVTTIMFLARAIVFVCVEYYPLLFITGNTLQCIMLVYCFLGYCCCCYFGLFCLLNR Sbjct 3720 NYSGVVTTIMFLARAIVFVCVEYYPLLFITGNTLQCIMLVYCFLGYCCCCYFGLFCLLNR 3779 Query 3774 YFRLTLGVYDYLVSTQEFRYMNSQGLLPPKSSIDAFKLNIKLLGIGGKPCIKVATVQSKM 3833 YFRLTLGVYDYLVSTQEFRYMNSQGLLPPKSSIDAFKLNIKLLGIGGKPCIKVATVQSKM Sbjct 3780 YFRLTLGVYDYLVSTQEFRYMNSQGLLPPKSSIDAFKLNIKLLGIGGKPCIKVATVQSKM 3839 Query 3834 SDVKCTSVVLLSVLQQLRVESSSKLWAQCVQLHNDILLAKDTTEAFEKMVSLLSVLLSMQ 3893 SDVKCTSVVLLSVLQQLRVESSSKLWAQCVQLHNDILLAKDTTEAFEKMVSLLSVLLSMQ Sbjct 3840 SDVKCTSVVLLSVLQQLRVESSSKLWAQCVQLHNDILLAKDTTEAFEKMVSLLSVLLSMQ 3899 Query 3894 GAVDINKLCEEMLDNRATLQAIASEFSSLPSYAAYATAQEAYEQAVSNGDSEVVLKKLKK 3953 GAVDIN+LCEEMLDNRATLQAIASEFSSLPSYAAYATAQEAYEQAV+NGDSEVVLKKLKK Sbjct 3900 GAVDINRLCEEMLDNRATLQAIASEFSSLPSYAAYATAQEAYEQAVANGDSEVVLKKLKK 3959 Query 3954 SLNVAKSEFDHDAAMQRKLEKMADQAMTQMYKQARSEDKRAKVTSAMQTMLFTMLRKLDN 4013 SLNVAKSEFD DAAMQRKLEKMADQAMTQMYKQARSEDKRAKVTSAMQTMLFTMLRKLDN Sbjct 3960 SLNVAKSEFDRDAAMQRKLEKMADQAMTQMYKQARSEDKRAKVTSAMQTMLFTMLRKLDN 4019 Query 4014 DALNNIINNARDGCVPLNIIPLTTAAKLMVVVPDYGTYKNTCDGNTFTYASALWEIQQVV 4073 DALNNIINNARDGCVPLNIIPLTTAAKLMVVVPDYGTYKNTCDGNTFTYASALWEIQQVV Sbjct 4020 DALNNIINNARDGCVPLNIIPLTTAAKLMVVVPDYGTYKNTCDGNTFTYASALWEIQQVV 4079 Query 4074 DADSKIVQLSEINMDNSPNLAWPLIVTALRANSAVKLQNNELSPVALRQMSCAAGTTQTA 4133 DADSKIVQLSEINMDNSPNLAWPLIVTALRANSAVKLQNNELSPVALRQMSCAAGTTQTA Sbjct 4080 DADSKIVQLSEINMDNSPNLAWPLIVTALRANSAVKLQNNELSPVALRQMSCAAGTTQTA 4139 Query 4134 CTDDNALAYYNNAKGGRFVLALLSDHQDLKWARFPKSDGTGTIYTELEPPCRFVTDTPKG 4193 CTDDNALAYYNN+KGGRFVLALLSDHQDLKWARFPKSDGTGTIYTELEPPCRFVTDTPKG Sbjct 4140 CTDDNALAYYNNSKGGRFVLALLSDHQDLKWARFPKSDGTGTIYTELEPPCRFVTDTPKG 4199 Query 4194 PKVKYLYFIKGLNNLNRGMVLGSLAATVRLQAGNATEVPANSTVLSFCAFAVDPAKAYKD 4253 PKVKYLYFIKGLNNLNRGMVLGSLAATVRLQAGNATEVPANSTVLSFCAFAVDPAKAYKD Sbjct 4200 PKVKYLYFIKGLNNLNRGMVLGSLAATVRLQAGNATEVPANSTVLSFCAFAVDPAKAYKD 4259 Query 4254 YLASGGQPITNCVKMLCTHTGTGQAITVTPEANMDQESFGGASCCLYCRCHIDHPNPKGF 4313 YLASGGQPITNCVKMLCTHTGTGQAITVTPEANMDQESFGGASCCLYCRCHIDHPNPKGF Sbjct 4260 YLASGGQPITNCVKMLCTHTGTGQAITVTPEANMDQESFGGASCCLYCRCHIDHPNPKGF 4319 Query 4314 CDLKGKYVQIPTTCANDPVGFTLRNTVCTVCGMWKGYGCSCDQLREPMMQSADASTFLN 4372 CDLKGKYVQIPTTCANDPVGFTLRNTVCTVCGMWKGYGCSCDQLREP+MQSADASTFLN Sbjct 4320 CDLKGKYVQIPTTCANDPVGFTLRNTVCTVCGMWKGYGCSCDQLREPLMQSADASTFLN 4378 >RecName: Full=Replicase polyprotein 1a; Short=pp1a; AltName: Full=ORF1a polyprotein; Contains: RecName: Full=Non-structural protein 1; Short=nsp1; AltName: Full=Leader protein; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p65 homolog; Contains: RecName: Full=Papain-like protease nsp3; Short=PL-PRO; AltName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=PL2-PRO; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; Contains: RecName: Full=3C-like proteinase nsp5; Short=3CL-PRO; Short=3CLp; AltName: Full=nsp5; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; Contains: RecName: Full=RNA-capping enzyme subunit nsp9; AltName: Full=Non-structural protein 9; Short=nsp9; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; Contains: RecName: Full=Non-structural protein 11; Short=nsp11 [Bat SARS CoV Rp3/2004] Sequence ID: P0C6T7.1 Length: 4380 Range 1: 1 to 4380 Score:8549 bits(22183), Expect:0.0, Method:Compositional matrix adjust., Identities:4098/4381(94%), Positives:4248/4381(96%), Gaps:6/4381(0%) Query 1 MESLVLGVNEKTHVQLSLPVLQVRDVLVRGFGDSVEEALSEAREHLKNGTCGLVELEKGV 60 MESLVLG+NEKTHVQLSLPVLQVRDVLVRGFGDSVEEALSEAREHLK+GTCG+VELEKGV Sbjct 1 MESLVLGINEKTHVQLSLPVLQVRDVLVRGFGDSVEEALSEAREHLKSGTCGIVELEKGV 60 Query 61 LPQLEQPYVFIKRSDALSTNHGHKVVELVAELDGIQFGRSGITLGVLVPHVGETPIAYRN 120 LPQ EQPYVFIKRSDA T+HGH+V ELVAELDG+Q+GRSGITLGVLVPHVGETPIAYRN Sbjct 61 LPQPEQPYVFIKRSDAQGTDHGHRVRELVAELDGVQYGRSGITLGVLVPHVGETPIAYRN 120 Query 121 VLLRKNGNKGAGGHSFGIDLKSYDLGDELGTDPIEDYEQNWNTKHGSGALRELTRELNGG 180 VLLRKNGNKGAGGHSFGIDLKSYDLGDELGTDPIEDYEQNWNTKHGSG LRELTRELNGG Sbjct 121 VLLRKNGNKGAGGHSFGIDLKSYDLGDELGTDPIEDYEQNWNTKHGSGVLRELTRELNGG 180 Query 181 VVTRYVDNNFCGPDGYPLECIKDFLARAGKSMCTLSEQLDYIESKRGVYCCREHEHEIVW 240 +TRYVDNNFCGPDGYPLECIKD LARAGKSMCTLSEQLDYIESKRGVYCCR+H HEI W Sbjct 181 ALTRYVDNNFCGPDGYPLECIKDLLARAGKSMCTLSEQLDYIESKRGVYCCRDHGHEIAW 240 Query 241 FTERSEKSYEHQTPFEIKSAKKFDTFKGECPKFVFPLNSKVKVIQPRVEKKKTEGFMGRI 300 FTERS+KSYEHQTPFEIKSAKKFDTFKGECPKFVFPLNSKVKVIQPRVEKKKTEGFMGRI Sbjct 241 FTERSDKSYEHQTPFEIKSAKKFDTFKGECPKFVFPLNSKVKVIQPRVEKKKTEGFMGRI 300 Query 301 RSVYPVATPQECNDMHLSTLMKCNHCDEVSWQTCDFLKATCEQCGTENLVCEGPTTCGYL 360 RSVYPVATPQECN+MHLSTLMKCNHCDEVSWQTCDFLKATCEQCGTENLV EGP TCGYL Sbjct 301 RSVYPVATPQECNNMHLSTLMKCNHCDEVSWQTCDFLKATCEQCGTENLVSEGPNTCGYL 360 Query 361 PTNAVVKMPCPACQDPEVGPEHSVADYHNHSNIETRLRKGGRTKCFGGCVFSYVGCYNKR 420 PTNAVVKMPCPACQDPE+GPEHS ADYHNHSNIETRLRKGGRT+CFGGCVF+YVGCYNKR Sbjct 361 PTNAVVKMPCPACQDPEIGPEHSAADYHNHSNIETRLRKGGRTRCFGGCVFAYVGCYNKR 420 Query 421 AYWVPRASANIGANHTGITGENVETLNEDLLEILNRERVNINIVGDFRFNEEVAIILASF 480 AYWVPRASA+IG+ HTGITG+NVETLNEDLLEIL+RERVNINIVGDF+ NEEVAIILASF Sbjct 421 AYWVPRASADIGSGHTGITGDNVETLNEDLLEILSRERVNINIVGDFQLNEEVAIILASF 480 Query 481 SASPSAFIETVKGLDYKSFKVIVESCGNYKVTNGKPVTGAWNIGQQRSILTPLCGFPSQA 540 SAS SAFI+T+K LDYKSFK IVESCGNYKVT GKP+ GAWNIGQ RS+LTPLCGFPSQA Sbjct 481 SASTSAFIDTIKSLDYKSFKTIVESCGNYKVTKGKPIKGAWNIGQHRSVLTPLCGFPSQA 540 Query 541 AGVIRSIFSRTLDAANHSILDLQRAAVTTLDGISEQSLRLVDAMVYTSDLLTNSVVVMAY 600 AGVIRSIFSRTLDAANHSI DLQRAAVT LD ISEQSLRLVDAMVYTS+LLTNSV++MAY Sbjct 541 AGVIRSIFSRTLDAANHSIPDLQRAAVTILDSISEQSLRLVDAMVYTSNLLTNSVIIMAY 600 Query 601 VTGGLVQQTMQWLSNMLGTAVDKLKPVFTWVEAKLSAGVEFLRDAWEILKFLITGVFDVI 660 VTGGLVQQT QWLSN+L T V+KL+P+F W+EAKLSAGVEFL+DAWEILKFLITGVFD++ Sbjct 601 VTGGLVQQTSQWLSNLLDTTVEKLRPIFAWIEAKLSAGVEFLKDAWEILKFLITGVFDIV 660 Query 661 KGQIQVATDNIKECVKIFLGVVNKALEMCLDQVTIAGTKLRALNLGEVFIAQSRGLYRQC 720 KGQIQVA+DNIK+CVK F+ VVNKALEMC+DQVTIAG KLR+LNLGEVFIAQS+GLYRQC Sbjct 661 KGQIQVASDNIKDCVKCFVDVVNKALEMCIDQVTIAGAKLRSLNLGEVFIAQSKGLYRQC 720 Query 721 IRGKEQLQLLMPLKAPKEVTFLEGDAHDTVLTSEEVVLKSGELEALETPIDSFTSGAVVG 780 IRGKEQLQLLMPLKAPKEVTFLEGD+HDTVLTSEEVVLK+GELEALETP+DSFT+GAVVG Sbjct 721 IRGKEQLQLLMPLKAPKEVTFLEGDSHDTVLTSEEVVLKNGELEALETPVDSFTNGAVVG 780 Query 781 TPVCINGLMLLELENKEQYCALSPGLLATNNVFRLKGGAPVKGVTFGEDTVLEVQGYKNV 840 TPVCINGLMLLE++ EQYCALSPGLLATNNVFRLKGGAP KGVTFGEDTV+EVQGYKNV Sbjct 781 TPVCINGLMLLEIKANEQYCALSPGLLATNNVFRLKGGAPTKGVTFGEDTVVEVQGYKNV 840 Query 841 KITFELDVRVDKVLNEKCSVYTVESGTEVTEFACVVAEAVVKTLQPVSDLLTPMGIDLDE 900 +ITFELD RVDKVLNEKCSVYTVESGTEVTEFACVVAEAVVKTLQPVSDLLT MGIDLDE Sbjct 841 RITFELDERVDKVLNEKCSVYTVESGTEVTEFACVVAEAVVKTLQPVSDLLTNMGIDLDE 900 Query 901 WSVATFYLFDDAGEEKLSSRMYCSFYPPDEEEDCEECEDEE----ETCEHEYGTEDDYKG 956 WSVATFYLFDD+GEEKLSSRMYCSFYPPDEEEDCEE E+EE TCEHEYGTE+DYKG Sbjct 901 WSVATFYLFDDSGEEKLSSRMYCSFYPPDEEEDCEEYEEEEEVSERTCEHEYGTEEDYKG 960 Query 957 LPLEFGASTETPHVEEEEEEEDWLDDAIEAEPEPEPLPEEPVNQFVGYLKLTDNVAIKCI 1016 LPLEFGAST+ VEE+EEE DWLDDA+EAEPEPEPL EEPVNQ GYLKLTDNVAIKC+ Sbjct 961 LPLEFGASTDIIQVEEQEEE-DWLDDAVEAEPEPEPLHEEPVNQLTGYLKLTDNVAIKCV 1019 Query 1017 DIVKEAQSAKPTVIVNAANTHLKHGGGVAGALNKATNGAMQNESDEYIRQNGPLTVGGSC 1076 DIV+EAQ+A P VIVNAAN HLKHGGGVAGALNKATNGAMQ ESD YI+ NGPLTVGGSC Sbjct 1020 DIVEEAQNANPMVIVNAANIHLKHGGGVAGALNKATNGAMQKESDHYIKLNGPLTVGGSC 1079 Query 1077 LLSGHNLAEKCLHVVGPNLNAGEDVQLLKRAYENFNSQDVLLAPLLSAGIFGAKPLQSLK 1136 LLSGHNLA+KCLHVVGPNLNAGED+QLLK AYENFNSQD+LLAPLLSAGIFGAKPLQSL+ Sbjct 1080 LLSGHNLAKKCLHVVGPNLNAGEDIQLLKAAYENFNSQDILLAPLLSAGIFGAKPLQSLQ 1139 Query 1137 MCVEIVRTQVYLAVNDKSLYDQIVLDYLDSLKPKVESPNKEEEPKLEEPKA-VQPVAEKP 1195 MCV+ VRTQVY+ VNDK LY+Q+V+DYLDSLKPKVE+P +E PK E PK + V +K Sbjct 1140 MCVQTVRTQVYIVVNDKVLYEQVVMDYLDSLKPKVEAPKQEVLPKAEYPKVDEKSVVQKT 1199 Query 1196 VDVKPKIKACIDEVTTTLEETKFLTNKLLLFADINGKLYQDSQNMLRGEDMSFLEKDAPY 1255 +DVKPKIKACIDEVTTTLEETKFLTNKLLLF DINGKLYQDS+NMLRGEDMSFLEKDAPY Sbjct 1200 IDVKPKIKACIDEVTTTLEETKFLTNKLLLFTDINGKLYQDSKNMLRGEDMSFLEKDAPY 1259 Query 1256 IVGDVITSGDITCVIIPAKKSGGTTEMLARALKEVPVAEYITTYPGQGCAGYTLEEAKTA 1315 +VGDVITSGDITCV+IP+KK+GGTTEML+RALK+VP+ EYITTYPGQGCAGYTLEEAKTA Sbjct 1260 MVGDVITSGDITCVVIPSKKAGGTTEMLSRALKKVPINEYITTYPGQGCAGYTLEEAKTA 1319 Query 1316 LKKCKSAFYVLPSETPNEKEEVLGTVSWNLREMLAHAEETRKLMPICLDVRAIMATIQRK 1375 LKKCKSAFYVLPSETPN KEE+LGTVSWNLREMLAHAEETRKLMP+C+DVRAIMATIQRK Sbjct 1320 LKKCKSAFYVLPSETPNAKEEILGTVSWNLREMLAHAEETRKLMPVCMDVRAIMATIQRK 1379 Query 1376 YKGIKVQEGIVDYGVRFFFYTSKEPVASIITKLNSLNEPLVTMPIGYVTHGLNLEEAARC 1435 YKGIK+QEGIVDYGVRFFFYTSKEPVASIITKLNSLNEPLVTMPIGYVTHG NLEEAARC Sbjct 1380 YKGIKIQEGIVDYGVRFFFYTSKEPVASIITKLNSLNEPLVTMPIGYVTHGFNLEEAARC 1439 Query 1436 MRSLKAPAVVSVSSPDAVTAYNGYLTSSSKTPEEYFVETTSLAGSYRDWSYSGQRTELGV 1495 MRSLKAPA+VSVSSPDAVT YNGYLTSSSKT E++FVET SLAGSYRDWSYSGQRTELGV Sbjct 1440 MRSLKAPAIVSVSSPDAVTTYNGYLTSSSKTSEDHFVETVSLAGSYRDWSYSGQRTELGV 1499 Query 1496 EFLKRGDKIVYHTTGSPIEFHLDGEVLPLDKLKSLLSLREVKTIKVFTTVDNTNLHTHIV 1555 EFLKRG+KIVYHT SP++FHLDGEVLPLDKLKSLLSLREVKTIKVFTTVDNTNLHT +V Sbjct 1500 EFLKRGEKIVYHTLESPVKFHLDGEVLPLDKLKSLLSLREVKTIKVFTTVDNTNLHTQLV 1559 Query 1556 DMSMTYGQQFGPTYLDGADVTKIKPHVNHEGKTFFVLPSDDTLRSEAFEYYHTIDESFLG 1615 DMSMTYGQQ GPTYL+GADVTKIKPHVNHEGKTFFVLPSDDTLRSEAFEYYHT+DESFLG Sbjct 1560 DMSMTYGQQLGPTYLEGADVTKIKPHVNHEGKTFFVLPSDDTLRSEAFEYYHTLDESFLG 1619 Query 1616 RYMSALNHTKKWKFPQVGGLTSIKWADNNCYLSSVLLALQQVEVKFNAPALQEAYYRARA 1675 RYMSALNHTKKWKFPQVGGLTSIKWADNNCYLSSVLLALQQ+EVKFNAPALQEAYYRARA Sbjct 1620 RYMSALNHTKKWKFPQVGGLTSIKWADNNCYLSSVLLALQQIEVKFNAPALQEAYYRARA 1679 Query 1676 GDAANFCALILAYSNKTVGELGDVRETMTHLLQHANLESAKRVLNVVCKHCGQKTTTLKG 1735 GDAANFCALILAYSNKTVGELGDVRETMTHLLQHANLESAKRVLNVVCKHCGQKTTTL G Sbjct 1680 GDAANFCALILAYSNKTVGELGDVRETMTHLLQHANLESAKRVLNVVCKHCGQKTTTLTG 1739 Query 1736 VEAVMYMGTLSYDELKTGVSIPCVCGRNATQYLVQQESSFVMMSAPPAEYKLQQGAFLCA 1795 VEAVMYMGTLSYD LK GVSIPCVCGR+ATQYLVQQESSFVMMSAPPAEYKLQQG FLCA Sbjct 1740 VEAVMYMGTLSYDNLKMGVSIPCVCGRDATQYLVQQESSFVMMSAPPAEYKLQQGTFLCA 1799 Query 1796 NEYTGNYQCGHYTHITAKETLYRVDGAHLTKMSEYKGPVTDVFYKETSYTTAIKPVSYKL 1855 NEYTGNYQCGHYTHITAKETLYR+DGAHLTKMSEYKGPVTDVFYKETSYTT IKPVSYKL Sbjct 1800 NEYTGNYQCGHYTHITAKETLYRIDGAHLTKMSEYKGPVTDVFYKETSYTTTIKPVSYKL 1859 Query 1856 DGVTYTEIEPKLDGYYKKGNAYYTEQPIDLVPTQPMPNASFDNFKLTCSNTKFADDLNQM 1915 DGVTYTEIEPKLDGYYKK NAYYTEQPIDL+PTQP+PNASFDNFKLTCSNTKFADDLNQM Sbjct 1860 DGVTYTEIEPKLDGYYKKDNAYYTEQPIDLIPTQPLPNASFDNFKLTCSNTKFADDLNQM 1919 Query 1916 TGFKKPASRELTVTFFPDLNGDVVAIDYRHYSTSFKKGAKLVHKPILWHINQTTNKTTYK 1975 TGF KPASREL+VTFFPDLNGDVVAIDYRHYS SFKKGAKL+HKPI+WHINQ T KTT+K Sbjct 1920 TGFTKPASRELSVTFFPDLNGDVVAIDYRHYSASFKKGAKLLHKPIVWHINQATTKTTFK 1979 Query 1976 PNIWCLRCLWSTKPVDTSNSFEVLVVEDTQGMDNLACESQTTTSEEVVENPTVQKEIIEC 2035 PN WCLRCLWSTKPVDTSNSFEVL VEDTQGMDNLACESQ T EEVVENPT+QKE+IEC Sbjct 1980 PNTWCLRCLWSTKPVDTSNSFEVLAVEDTQGMDNLACESQQPTPEEVVENPTIQKEVIEC 2039 Query 2036 DVKTTEVVGNVILKPSEEGVKVTQELGHEDLMAAYVEETSITIKKPNELSLALGLKTLAT 2095 DVKTTEVVGNVILKPS+EGVKVTQEL HEDLMAAYVE TSITIKKPNELSLALGLKT+AT Sbjct 2040 DVKTTEVVGNVILKPSDEGVKVTQELDHEDLMAAYVENTSITIKKPNELSLALGLKTIAT 2099 Query 2096 HGAAAINSVPWSKILAYVKPFLGQTAVITSNCIKKCVQRVFSNYMPYVITLLFQLCTFTK 2155 HG AAINSVPW KILAYVKPFLGQ AV TSNC K+ VQR+F+NYMPYV+TLLFQLCTFTK Sbjct 2100 HGIAAINSVPWGKILAYVKPFLGQAAVTTSNCAKRLVQRMFNNYMPYVLTLLFQLCTFTK 2159 Query 2156 STNSRIKASLPTTIAKNSVKSVAKLCLDVCINYVKSPKFSKLFTIVMWLLLLSICLGSLT 2215 STNSRI+ASLPTTIAKNSV+ + +LCLD INYVKSPKFSKLFTI MWLLLLSICLGSL Sbjct 2160 STNSRIRASLPTTIAKNSVRGIVRLCLDAGINYVKSPKFSKLFTIAMWLLLLSICLGSLI 2219 Query 2216 YVTAVLGVCLSSLGVPSYCDGVRELYINSSNVTTMDFCQGYFPCSVCLSGLDSLDSYPAL 2275 YVTA LGV LS+ G PSYC GVRE Y+NSSNVTTMDFC+G FPCSVCLSGLDSLDSYPAL Sbjct 2220 YVTAALGVLLSNFGAPSYCSGVRESYLNSSNVTTMDFCEGSFPCSVCLSGLDSLDSYPAL 2279 Query 2276 ETIQVTISSYKLDLTFLGLAAEWLLAYMLFTKFFYLLGLSAIMQAFFGYFASHFISNSWL 2335 ETIQVTISSYKLDLT LGLAAEW AYMLFTKFFYLLGLSAIMQ FFGYFASHFISNSWL Sbjct 2280 ETIQVTISSYKLDLTILGLAAEWFFAYMLFTKFFYLLGLSAIMQVFFGYFASHFISNSWL 2339 Query 2336 MWFIISIVQMAPVSAMVRMYIFFASFYYVWKSYVHIMDGCTSSTCMMCYKRNRATRVECT 2395 MWFIISIVQMAPVSAMVRMYIFFASFYY+WKSYVHIMDGCTSSTCMMCYKRNRATRVECT Sbjct 2340 MWFIISIVQMAPVSAMVRMYIFFASFYYIWKSYVHIMDGCTSSTCMMCYKRNRATRVECT 2399 Query 2396 TIVNGVKRSFYVYANGGRGFCKAHNWNCLNCDTFCAGSTFISDEVARDLSLQFKRPINPT 2455 TIVNG+KRSFYVYANGGRGFCK HNWNCLNCDTFCAGSTFISDEVARDLSLQFKRPINPT Sbjct 2400 TIVNGMKRSFYVYANGGRGFCKTHNWNCLNCDTFCAGSTFISDEVARDLSLQFKRPINPT 2459 Query 2456 DQSAYVVDSVTVKNGALHLYFDKAGQKTYERHPLSHFVNLDNLRANNTKGSLPINVIVFD 2515 DQS+YVVDSV VKNGALHLYFDKAGQKTYERHPLSHFVNLDNLRANNTKGSLPINVIVFD Sbjct 2460 DQSSYVVDSVAVKNGALHLYFDKAGQKTYERHPLSHFVNLDNLRANNTKGSLPINVIVFD 2519 Query 2516 GKSKCEESAAKSASVYYSQLMCQPILLLDQALVSDVGDSTEVSVKMFDAYVDTFSATFSV 2575 GKSKC+ESAAKSASVYYSQLMCQPILLLDQALVSDVGDSTEVSVKMFDAYVDTFSATFSV Sbjct 2520 GKSKCDESAAKSASVYYSQLMCQPILLLDQALVSDVGDSTEVSVKMFDAYVDTFSATFSV 2579 Query 2576 PMEKLKALVATAHSELAKGVALDGVLSTFVSAARQGVVDTDVDTKDVIECLKLSHHSDIE 2635 PMEKLKALVATAHSELAKGVALDGVLSTFVSA+RQGVVDTDVDTKDVIECLKLSHHSD+E Sbjct 2580 PMEKLKALVATAHSELAKGVALDGVLSTFVSASRQGVVDTDVDTKDVIECLKLSHHSDLE 2639 Query 2636 VTGDSCNNFMLTYNKVENMTPRDLGACIDCNARHINAQVAKSHNVSLVWNVKDYMSLSEQ 2695 VTGDSCNNFMLTYNKVENMTPRDLGACIDCNARHINAQVA+SHNVSL+WNVKDYMSLSEQ Sbjct 2640 VTGDSCNNFMLTYNKVENMTPRDLGACIDCNARHINAQVARSHNVSLIWNVKDYMSLSEQ 2699 Query 2696 LRKQIRSAAKKNNIPFRLTCATTRQVVNVITTKISLKGGKVVSTWFKLLLKVTLLCVLAA 2755 LRKQIRSAAKKNNIPFRLTCATTRQVVNVITTKISLKGGK+VSTWFK++LK TLLCVLAA Sbjct 2700 LRKQIRSAAKKNNIPFRLTCATTRQVVNVITTKISLKGGKIVSTWFKIMLKATLLCVLAA 2759 Query 2756 LFCYVIMPVHSLSVHDGYTNEIIGYKAIQDGVTRDIVSTDDCFANKHAGFDSWFSQRGGS 2815 L CY++MPVH LSVH GYTNEIIGYKAIQDGVTRDIVSTDDCFANKHAGFDSWFSQRGGS Sbjct 2760 LVCYIVMPVHILSVHGGYTNEIIGYKAIQDGVTRDIVSTDDCFANKHAGFDSWFSQRGGS 2819 Query 2816 YRNDKNCPVVAAIITREIGFIVPGLPGTVLRALNGDFLHFLPRVFSAVGNICYTPSKLIE 2875 Y+NDK+CPVVAAIITREIGFIVPGLPGTVLRA+NGDFLHFLPRVFSAVGNICYTPSKLIE Sbjct 2820 YKNDKSCPVVAAIITREIGFIVPGLPGTVLRAINGDFLHFLPRVFSAVGNICYTPSKLIE 2879 Query 2876 YSDFATSACVLAAECTIFKDAMGKPVPYCYDTNLLEGSISYSELRPDTRYVLMDGSIIQF 2935 YSDF+TSACVLAAECTIFKDAMGKPVPYCYDTNLLEGSISYSELRPDTRYVLMDGSIIQF Sbjct 2880 YSDFSTSACVLAAECTIFKDAMGKPVPYCYDTNLLEGSISYSELRPDTRYVLMDGSIIQF 2939 Query 2936 PNTYLEGSVRVVTTFDAEYCRHGTCERSEVGVCLSTSGRWVLNNEHYRALPGVFCGVDAM 2995 PN YLEGSVRVVTTFDAEYCRHGTCERSE G+CLSTSGRWVLNNEHYRALPGVFCGVDAM Sbjct 2940 PNAYLEGSVRVVTTFDAEYCRHGTCERSEAGICLSTSGRWVLNNEHYRALPGVFCGVDAM 2999 Query 2996 NLIANIFTPLVQPVGALDVSASVVAGGIIAILVTCAAYYFMKFRRAFGEYNHVVAANALL 3055 NLIANIFTPLVQPVGALDVSASVVAGGIIAILVTCAAYYFMKFRRAFGEYNHVVAANA L Sbjct 3000 NLIANIFTPLVQPVGALDVSASVVAGGIIAILVTCAAYYFMKFRRAFGEYNHVVAANAPL 3059 Query 3056 FLMSFTILCLAPAYSFLPGVYSIFYLYLTFYFTNDVSFLAHLQWFAMFSPIVPFWITAIY 3115 FLMSFTILCLAPAYSFLPGVYS+FYLYLTFYFTNDVSFLAHLQWFAMFSPIVPFWITAIY Sbjct 3060 FLMSFTILCLAPAYSFLPGVYSVFYLYLTFYFTNDVSFLAHLQWFAMFSPIVPFWITAIY 3119 Query 3116 VFCISLKHFHWFFSNYLKKRVMFNGVTFSTFEEAALCTFLLNKEMYLRLRSETLLPLTQY 3175 VFCISLKHFHWFF+NYL+KRV+FNGVTFSTFEEAALCTFLLNKEMYL+LRSETLLPLTQY Sbjct 3120 VFCISLKHFHWFFNNYLRKRVVFNGVTFSTFEEAALCTFLLNKEMYLKLRSETLLPLTQY 3179 Query 3176 NRYLALYNKYKYFSGALDTTSYREAACCHLAKALNDFSNSGADVLYQPPQTSITSAVLQS 3235 NRYLALYNKYKYFSGALDTTSYREAACCHLAKALNDFSNSGADVLYQPPQTSITSAVLQS Sbjct 3180 NRYLALYNKYKYFSGALDTTSYREAACCHLAKALNDFSNSGADVLYQPPQTSITSAVLQS 3239 Query 3236 GFRKMAFPSGKVEGCMVQVTCGTTTLNGLWLDDTVYCPRHVVCTAEDMLNPNYDDLLIRK 3295 GFRKMAFPSGKVEGCMVQVTCGTTTLNGLWLDDTVYCPRHV+CTAEDMLNPNY+DLLIRK Sbjct 3240 GFRKMAFPSGKVEGCMVQVTCGTTTLNGLWLDDTVYCPRHVICTAEDMLNPNYEDLLIRK 3299 Query 3296 SNHSFLVQAGNVQLRVIGHSMQNCLLRLKVDTSNPKTPKYKFVRIQPGQTFSVLACYNGS 3355 SNHSFLVQAGNVQLRVIGHSMQNCLLRLKVDTSNPKTPKYKFVRIQPGQTFSVLACYNGS Sbjct 3300 SNHSFLVQAGNVQLRVIGHSMQNCLLRLKVDTSNPKTPKYKFVRIQPGQTFSVLACYNGS 3359 Query 3356 PSGVYQCAMRPNHTIKGSFLNGSCGSVGFNIDYDCVSFCYMHHMELPTGVHAGTDLEGKF 3415 PSGVYQCAMRPNHTIKGSFLNGSCGSVGFNIDYDCVSFCYMHHMELPT VHAGTDLEGKF Sbjct 3360 PSGVYQCAMRPNHTIKGSFLNGSCGSVGFNIDYDCVSFCYMHHMELPTEVHAGTDLEGKF 3419 Query 3416 YGPFVDRQTAQAAGTDTTITLNVLAWLYAAVINGDRWFLNRFTTTLNDFNLVAMKYNYEP 3475 YGPFVDRQTAQAAGTDTTITLNVLAWLYAAVINGDRWFLNRFTTTLNDFNLVAMKYNYEP Sbjct 3420 YGPFVDRQTAQAAGTDTTITLNVLAWLYAAVINGDRWFLNRFTTTLNDFNLVAMKYNYEP 3479 Query 3476 LTQDHVDILGPLSAQTGIAVLDMCAALKELLQNGMNGRTILGSTILEDEFTPFDVVRQCS 3535 LTQDHVDILGPLSAQTGIAVLDMCAALKELLQNGMNGRTILGSTILEDEFTPFDVVRQCS Sbjct 3480 LTQDHVDILGPLSAQTGIAVLDMCAALKELLQNGMNGRTILGSTILEDEFTPFDVVRQCS 3539 Query 3536 GVTFQGKFKKIVKGTHHWMLLTFLTSLLILVQSTQWSLFFFVYENAFLPFALGIMAVAAC 3595 GVTFQGKFK+IVKGTHHWMLLTFLTSLLILVQSTQWSLFFFVYENAFLPF LGIMAVAAC Sbjct 3540 GVTFQGKFKRIVKGTHHWMLLTFLTSLLILVQSTQWSLFFFVYENAFLPFTLGIMAVAAC 3599 Query 3596 AMLLVKHKHAFLCLFLLPSLATVAYFNMVYMPASWVMRIMTWLELADTSLSGYRLKDCVM 3655 AMLLVKHKHAFLCLFLLPSLATVAYFNMVYMPASWVMRIMTWLELADTSLSGYRLKDCVM Sbjct 3600 AMLLVKHKHAFLCLFLLPSLATVAYFNMVYMPASWVMRIMTWLELADTSLSGYRLKDCVM 3659 Query 3656 YASALVLLILMTARTVYDDAARRVWTLMNVITLVYKVYYGNSLDQAISMWALVISVTSNY 3715 YASALVLL+LMTARTVYDDAARRVWTLMNVITLVYKVYYGN+LDQAISMWALVISVTSNY Sbjct 3660 YASALVLLVLMTARTVYDDAARRVWTLMNVITLVYKVYYGNALDQAISMWALVISVTSNY 3719 Query 3716 SGVVTTIMFLARAIVFVCVEYYPLLFITGNTLQCIMLVYCFLGYCCCCYFGLFCLLNRYF 3775 SGVVTTIMFLARAIVFVCVEYYPLLFITGNTLQCIMLVYCFLGYCCCCYFGLFCLLNRYF Sbjct 3720 SGVVTTIMFLARAIVFVCVEYYPLLFITGNTLQCIMLVYCFLGYCCCCYFGLFCLLNRYF 3779 Query 3776 RLTLGVYDYLVSTQEFRYMNSQGLLPPKSSIDAFKLNIKLLGIGGKPCIKVATVQSKMSD 3835 RLTLGVYDYLVSTQEFRYMNSQGLLPPKSSIDAFKLNIKLLGIGGKPCIKVATVQSKMSD Sbjct 3780 RLTLGVYDYLVSTQEFRYMNSQGLLPPKSSIDAFKLNIKLLGIGGKPCIKVATVQSKMSD 3839 Query 3836 VKCTSVVLLSVLQQLRVESSSKLWAQCVQLHNDILLAKDTTEAFEKMVSLLSVLLSMQGA 3895 VKCTSVVLLSVLQQLRVESSSKLWAQCVQLHNDILLAKDTTEAFEKMVSLLSVLLSMQGA Sbjct 3840 VKCTSVVLLSVLQQLRVESSSKLWAQCVQLHNDILLAKDTTEAFEKMVSLLSVLLSMQGA 3899 Query 3896 VDINKLCEEMLDNRATLQAIASEFSSLPSYAAYATAQEAYEQAVSNGDSEVVLKKLKKSL 3955 VDINKLCEEMLDNRATLQAIASEFSSLPSYAAYATAQEAYEQAV+NGDSEVVLKKLKKSL Sbjct 3900 VDINKLCEEMLDNRATLQAIASEFSSLPSYAAYATAQEAYEQAVANGDSEVVLKKLKKSL 3959 Query 3956 NVAKSEFDHDAAMQRKLEKMADQAMTQMYKQARSEDKRAKVTSAMQTMLFTMLRKLDNDA 4015 NVAKSEFD +AAMQRKLEKMADQAMTQMYKQARSEDKRAKVTSAMQTMLFTMLRKLDNDA Sbjct 3960 NVAKSEFDRNAAMQRKLEKMADQAMTQMYKQARSEDKRAKVTSAMQTMLFTMLRKLDNDA 4019 Query 4016 LNNIINNARDGCVPLNIIPLTTAAKLMVVVPDYGTYKNTCDGNTFTYASALWEIQQVVDA 4075 LNNIINNARDGCVPLNIIPLTTAAKLMVVVPDYGTYKNTCDGNTFTYASALWEIQQVVDA Sbjct 4020 LNNIINNARDGCVPLNIIPLTTAAKLMVVVPDYGTYKNTCDGNTFTYASALWEIQQVVDA 4079 Query 4076 DSKIVQLSEINMDNSPNLAWPLIVTALRANSAVKLQNNELSPVALRQMSCAAGTTQTACT 4135 DSKIVQLSEINM+NS NLAWPLIVTALRANSAVKLQNNELSPVALRQMSCAAGTTQTACT Sbjct 4080 DSKIVQLSEINMENSSNLAWPLIVTALRANSAVKLQNNELSPVALRQMSCAAGTTQTACT 4139 Query 4136 DDNALAYYNNAKGGRFVLALLSDHQDLKWARFPKSDGTGTIYTELEPPCRFVTDTPKGPK 4195 DDNALAYYNN+KGGRFVLALLSDHQDLKWARFPKSDGTGTIYTELEPPCRFVTDTPKGPK Sbjct 4140 DDNALAYYNNSKGGRFVLALLSDHQDLKWARFPKSDGTGTIYTELEPPCRFVTDTPKGPK 4199 Query 4196 VKYLYFIKGLNNLNRGMVLGSLAATVRLQAGNATEVPANSTVLSFCAFAVDPAKAYKDYL 4255 VKYL+FIKGLNNLNRGMVLGSLAATVRLQAGNATEVPANSTVLSFCAFAVDPAKAYKDYL Sbjct 4200 VKYLHFIKGLNNLNRGMVLGSLAATVRLQAGNATEVPANSTVLSFCAFAVDPAKAYKDYL 4259 Query 4256 ASGGQPITNCVKMLCTHTGTGQAITVTPEANMDQESFGGASCCLYCRCHIDHPNPKGFCD 4315 ASGGQPITNCVKMLCTHTGTGQAITVTPEANMDQESFGGASCCLYCRCHIDHPNPKGFCD Sbjct 4260 ASGGQPITNCVKMLCTHTGTGQAITVTPEANMDQESFGGASCCLYCRCHIDHPNPKGFCD 4319 Query 4316 LKGKYVQIPTTCANDPVGFTLRNTVCTVCGMWKGYGCSCDQLREPMMQSADASTFLNGFA 4375 LKGKYVQIPTTCANDPVGFTLRNTVCTVCGMWKGYGCSCDQLREPMMQSADASTFLNGFA Sbjct 4320 LKGKYVQIPTTCANDPVGFTLRNTVCTVCGMWKGYGCSCDQLREPMMQSADASTFLNGFA 4379 Query 4376 V 4376 V Sbjct 4380 V 4380 >RecName: Full=Replicase polyprotein 1a; Short=pp1a; AltName: Full=ORF1a polyprotein; Contains: RecName: Full=Non-structural protein 1; Short=nsp1; AltName: Full=Leader protein; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p65 homolog; Contains: RecName: Full=Papain-like protease nsp3; Short=PL-PRO; AltName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=PL2-PRO; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; Contains: RecName: Full=3C-like proteinase nsp5; Short=3CL-PRO; Short=3CLp; AltName: Full=nsp5; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; Contains: RecName: Full=RNA-capping enzyme subunit nsp9; AltName: Full=Non-structural protein 9; Short=nsp9; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; Contains: RecName: Full=Non-structural protein 11; Short=nsp11 [Bat CoV 279/2005] Sequence ID: P0C6F5.1 Length: 4388 Range 1: 1 to 4388 Score:8517 bits(22099), Expect:0.0, Method:Compositional matrix adjust., Identities:4112/4392(94%), Positives:4250/4392(96%), Gaps:20/4392(0%) Query 1 MESLVLGVNEKTHVQLSLPVLQVRDVLVRGFGDSVEEALSEAREHLKNGTCGLVELEKGV 60 MESL LGV+EKTHVQLSLPVLQVRDVLVRGFGDSVEEAL+EAREHLKNGTCGLVELEKGV Sbjct 1 MESLALGVSEKTHVQLSLPVLQVRDVLVRGFGDSVEEALAEAREHLKNGTCGLVELEKGV 60 Query 61 LPQLEQPYVFIKRSDALSTNHGHKVVELVAELDGIQFGRSGITLGVLVPHVGETPIAYRN 120 LPQLEQPYVFIKRSDA TNHG+KVVELVAELDGIQ+GRSG TLGVLVPHVGETP+AYRN Sbjct 61 LPQLEQPYVFIKRSDAQGTNHGYKVVELVAELDGIQYGRSGTTLGVLVPHVGETPVAYRN 120 Query 121 VLLRKNGNKGAGGHSFGIDLKSYDLGDELGTDPIEDYEQNWNTKHGSGALRELTRELNGG 180 VLLRKNGNKGAGGHS+GIDLKSYDLG ELGTDPIEDYEQNWNTKHG G LREL RELNGG Sbjct 121 VLLRKNGNKGAGGHSYGIDLKSYDLGVELGTDPIEDYEQNWNTKHGGGVLRELIRELNGG 180 Query 181 VVTRYVDNNFCGPDGYPLECIKDFLARAGKSMCTLSEQLDYIESKRGVYCCREHEHEIVW 240 TRYVDNNFCGPDGYPLECIKD LARAGKSMCTLSEQLDYIESKRGVYCCREHEHEIVW Sbjct 181 AFTRYVDNNFCGPDGYPLECIKDLLARAGKSMCTLSEQLDYIESKRGVYCCREHEHEIVW 240 Query 241 FTERSEKSYEHQTPFEIKSAKKFDTFKGECPKFVFPLNSKVKVIQPRVEKKKTEGFMGRI 300 FTERSEKSYE QTPFEIKSAKKFDTFKGECPKFVFPLNSKVKVIQPRVEKKKTEGFMGRI Sbjct 241 FTERSEKSYERQTPFEIKSAKKFDTFKGECPKFVFPLNSKVKVIQPRVEKKKTEGFMGRI 300 Query 301 RSVYPVATPQECNDMHLSTLMKCNHCDEVSWQTCDFLKATCEQCGTENLVCEGPTTCGYL 360 RSVYPVATPQECNDMHLSTLMKCNHCDEVSWQTCDFLKATCEQCGTENLVCEGPTTCGYL Sbjct 301 RSVYPVATPQECNDMHLSTLMKCNHCDEVSWQTCDFLKATCEQCGTENLVCEGPTTCGYL 360 Query 361 PTNAVVKMPCPACQDPEVGPEHSVADYHNHSNIETRLRKGGRTKCFGGCVFSYVGCYNKR 420 P NAVVKMPCPACQDPEVGPEHSVADYHNHSNIETRLRKGGRTKCFGGCVF+YVGCYNKR Sbjct 361 PANAVVKMPCPACQDPEVGPEHSVADYHNHSNIETRLRKGGRTKCFGGCVFAYVGCYNKR 420 Query 421 AYWVPRASANIGANHTGITGENVETLNEDLLEILNRERVNINIVGDFRFNEEVAIILASF 480 AYWVPRASANIGA+HTGITG+NVETLNEDL+EILNR+RVNINIVGDF NEEVAIILASF Sbjct 421 AYWVPRASANIGASHTGITGDNVETLNEDLMEILNRDRVNINIVGDFHLNEEVAIILASF 480 Query 481 SASPSAFIETVKGLDYKSFKVIVESCGNYKVTNGKPVTGAWNIGQQRSILTPLCGFPSQA 540 SAS AF++TVKGLDYK+FK IVESCGN+KVT G+ GAWNIGQ++SILTPL GFPSQA Sbjct 481 SASTCAFVDTVKGLDYKTFKDIVESCGNFKVTRGRAKKGAWNIGQEKSILTPLYGFPSQA 540 Query 541 AGVIRSIFSRTLDAANHSILDLQRAAVTTLDGISEQSLRLVDAMVYTSDLLTNSVVVMAY 600 AGVIRSIF+R LD ANHSI DLQRAA+T LDGISEQSLRL+DAMVYTSDLLTNSV+VMAY Sbjct 541 AGVIRSIFTRALDTANHSIPDLQRAAITILDGISEQSLRLIDAMVYTSDLLTNSVIVMAY 600 Query 601 VTGGLVQQTMQWLSNMLGTAVDKLKPVFTWVEAKLSAGVEFLRDAWEILKFLITGVFDVI 660 VTGGLVQQ QWLSNMLGT VDKLKPVFTWVEAKLSAG+EFLRDAWEILKFL+TGVFD++ Sbjct 601 VTGGLVQQITQWLSNMLGTTVDKLKPVFTWVEAKLSAGIEFLRDAWEILKFLVTGVFDIV 660 Query 661 KGQIQVATDNIKECVKIFLGVVNKALEMCLDQVTIAGTKLRALNLGEVFIAQSRGLYRQC 720 KGQIQVA+DN+KECVK FL V+NKALEMC+DQV IAG KLR LNLGEVFIAQS+GLYRQC Sbjct 661 KGQIQVASDNLKECVKAFLDVLNKALEMCIDQVIIAGAKLRTLNLGEVFIAQSKGLYRQC 720 Query 721 IRGKEQLQLLMPLKAPKEVTFLEGDAHDTVLTSEEVVLKSGELEALETPIDSFTSGAVVG 780 IRGKEQLQLLMPL+APKEVTF EGD+HDTV TSEEVVLK+GELEALETP+DSFT+GAV+G Sbjct 721 IRGKEQLQLLMPLRAPKEVTFFEGDSHDTVFTSEEVVLKNGELEALETPVDSFTNGAVIG 780 Query 781 TPVCINGLMLLELENKEQYCALSPGLLATNNVFRLKGGAPVKGVTFGEDTVLEVQGYKNV 840 TPVC+NGLMLLEL++KEQYCALSPGLLATNNVF LKGGAPVKGVTFGEDTVLEVQGYKNV Sbjct 781 TPVCVNGLMLLELKDKEQYCALSPGLLATNNVFSLKGGAPVKGVTFGEDTVLEVQGYKNV 840 Query 841 KITFELDVRVDKVLNEKCSVYTVESGTEVTEFACVVAEAVVKTLQPVSDLLTPMGIDLDE 900 KITFELD RVDKVLNEKCSVYTVESGTEVTEFACVVAEAVVKTLQPVSDLLT MGIDLDE Sbjct 841 KITFELDERVDKVLNEKCSVYTVESGTEVTEFACVVAEAVVKTLQPVSDLLTNMGIDLDE 900 Query 901 WSVATFYLFDDAGEEKLSSRMYCSFYPPDEEEDCEECEDEEETCE----HEYGTEDDYKG 956 WSVATFYLFDDAGEEKLSSRMYCSFYPPDEEEDCEE EDEEE E HEYGTEDDYKG Sbjct 901 WSVATFYLFDDAGEEKLSSRMYCSFYPPDEEEDCEEYEDEEEIPEETCEHEYGTEDDYKG 960 Query 957 LPLEFGASTETPHVEEEEEEEDWLDDAIEAEPEPEPLPEEPVNQFVGYLKLTDNVAIKCI 1016 LPLEFGASTE V+EEEEE+ L++AI A+PEPEPLPEEPVNQF GYLKLTDNVAIKC+ Sbjct 961 LPLEFGASTEIQQVDEEEEEDW-LEEAIAAKPEPEPLPEEPVNQFTGYLKLTDNVAIKCV 1019 Query 1017 DIVKEAQSAKPTVIVNAANTHLKHGGGVAGALNKATNGAMQNESDEYIRQNGPLTVGGSC 1076 DIVKEAQ AKPTVIVNAAN HLKHGGGVAGALNKATNGAMQ ESD+YI++NGPLTVGGSC Sbjct 1020 DIVKEAQHAKPTVIVNAANVHLKHGGGVAGALNKATNGAMQQESDDYIKKNGPLTVGGSC 1079 Query 1077 LLSGHNLAEKCLHVVGPNLNAGEDVQLLKRAYENFNSQDVLLAPLLSAGIFGAKPLQSLK 1136 LLSGHNLA+KC+HVVGPNLNAGEDVQLLK AY NFNSQDVLLAPLLSAGIFGAKPLQSLK Sbjct 1080 LLSGHNLAKKCMHVVGPNLNAGEDVQLLKAAYANFNSQDVLLAPLLSAGIFGAKPLQSLK 1139 Query 1137 MCVEIVRTQVYLAVNDKSLYDQIVLDYLDSLKPKVESPNKEEEPKLEEPKAVQ------- 1189 MCVE VRTQVY AVND+ LYD +VL YLDSLKPKVE+P +E +L+E AV+ Sbjct 1140 MCVETVRTQVYFAVNDQDLYDHVVLGYLDSLKPKVETPT-QENLELKEQPAVETLTQENL 1198 Query 1190 -----PVAEKPVDVKPKIKACIDEVTTTLEETKFLTNKLLLFADINGKLYQDSQNMLRGE 1244 PV EKPVDVK KA I+EV T+LEETKFLT++LLLFADINGKLYQDSQNMLRGE Sbjct 1199 ELEELPVIEKPVDVK--FKARIEEVNTSLEETKFLTSRLLLFADINGKLYQDSQNMLRGE 1256 Query 1245 DMSFLEKDAPYIVGDVITSGDITCVIIPAKKSGGTTEMLARALKEVPVAEYITTYPGQGC 1304 DM FLEKDAPYIVGDVI+SGDITCVIIPAKK+GGTTEMLA+ALK+VPV+EYITTYPGQGC Sbjct 1257 DMFFLEKDAPYIVGDVISSGDITCVIIPAKKAGGTTEMLAKALKKVPVSEYITTYPGQGC 1316 Query 1305 AGYTLEEAKTALKKCKSAFYVLPSETPNEKEEVLGTVSWNLREMLAHAEETRKLMPICLD 1364 AGYTLEEAKTAL+KCKS FYVLPS+TPN+KEE+LGTVSWNLREMLAHAEETRKLM IC+D Sbjct 1317 AGYTLEEAKTALRKCKSVFYVLPSKTPNDKEEILGTVSWNLREMLAHAEETRKLMLICMD 1376 Query 1365 VRAIMATIQRKYKGIKVQEGIVDYGVRFFFYTSKEPVASIITKLNSLNEPLVTMPIGYVT 1424 V+A+M+TI R+YKGIKVQEGIVDYGVRFFFYTSKEPVASIITKLN LNEPLVTMPIGYVT Sbjct 1377 VKALMSTIHRRYKGIKVQEGIVDYGVRFFFYTSKEPVASIITKLNLLNEPLVTMPIGYVT 1436 Query 1425 HGLNLEEAARCMRSLKAPAVVSVSSPDAVTAYNGYLTSSSKTPEEYFVETTSLAGSYRDW 1484 HGLNLEEAARCMRSLKAPAVVSVSSPDAVT YNGYLTSSSKT EE+F+ET SLAG YRDW Sbjct 1437 HGLNLEEAARCMRSLKAPAVVSVSSPDAVTTYNGYLTSSSKTSEEHFIETVSLAGMYRDW 1496 Query 1485 SYSGQRTELGVEFLKRGDKIVYHTTGSPIEFHLDGEVLPLDKLKSLLSLREVKTIKVFTT 1544 SYSGQRTELGVEFLKRGDK+VYHT GSPI+FHLDGEVL LDKLKSLLSLREV+TIKVFTT Sbjct 1497 SYSGQRTELGVEFLKRGDKVVYHTVGSPIQFHLDGEVLLLDKLKSLLSLREVRTIKVFTT 1556 Query 1545 VDNTNLHTHIVDMSMTYGQQFGPTYLDGADVTKIKPHVNHEGKTFFVLPSDDTLRSEAFE 1604 VDNTNLHT IVDMSMTYGQQFGPTYLDGADVTKIKPH HEGKTFFVLPSDDTLRSEAFE Sbjct 1557 VDNTNLHTQIVDMSMTYGQQFGPTYLDGADVTKIKPHAKHEGKTFFVLPSDDTLRSEAFE 1616 Query 1605 YYHTIDESFLGRYMSALNHTKKWKFPQVGGLTSIKWADNNCYLSSVLLALQQVEVKFNAP 1664 YYHT+DESFLGRYMSALNHTKKWKFPQ+GGLTSIKWADNNCYLSSVLLALQQ+EVKFNAP Sbjct 1617 YYHTLDESFLGRYMSALNHTKKWKFPQIGGLTSIKWADNNCYLSSVLLALQQIEVKFNAP 1676 Query 1665 ALQEAYYRARAGDAANFCALILAYSNKTVGELGDVRETMTHLLQHANLESAKRVLNVVCK 1724 ALQEAYYRARAGDAANFCALILAYSN+TVGELGDVRETMTHLLQHANLESAKRVLNVVCK Sbjct 1677 ALQEAYYRARAGDAANFCALILAYSNRTVGELGDVRETMTHLLQHANLESAKRVLNVVCK 1736 Query 1725 HCGQKTTTLKGVEAVMYMGTLSYDELKTGVSIPCVCGRNATQYLVQQESSFVMMSAPPAE 1784 CGQK+TTL GVEAVMYMGTLSY+ELKTGV+IPC+CGR+ATQYLVQQESSFVMMSAPP+E Sbjct 1737 TCGQKSTTLTGVEAVMYMGTLSYEELKTGVTIPCICGRDATQYLVQQESSFVMMSAPPSE 1796 Query 1785 YKLQQGAFLCANEYTGNYQCGHYTHITAKETLYRVDGAHLTKMSEYKGPVTDVFYKETSY 1844 Y LQQGAFLCANEYTG+YQCGHYTH+T KETLYR+DGA+LTKMSEYKGPVTDVFYKE SY Sbjct 1797 YTLQQGAFLCANEYTGSYQCGHYTHVTVKETLYRIDGAYLTKMSEYKGPVTDVFYKEISY 1856 Query 1845 TTAIKPVSYKLDGVTYTEIEPKLDGYYKKGNAYYTEQPIDLVPTQPMPNASFDNFKLTCS 1904 TT IKPVSYKLDGV YTEI+PKLD YYKK NAYYTEQPIDLVPTQP+PNASFDNFKLTCS Sbjct 1857 TTTIKPVSYKLDGVIYTEIQPKLDEYYKKDNAYYTEQPIDLVPTQPLPNASFDNFKLTCS 1916 Query 1905 NTKFADDLNQMTGFKKPASRELTVTFFPDLNGDVVAIDYRHYSTSFKKGAKLVHKPILWH 1964 NTKFADDLNQMTGFKKPASREL+VTFFPDLNGDVVAIDYRHYS SFKKGAKL+HKPI+WH Sbjct 1917 NTKFADDLNQMTGFKKPASRELSVTFFPDLNGDVVAIDYRHYSASFKKGAKLLHKPIIWH 1976 Query 1965 INQTTNKTTYKPNIWCLRCLWSTKPVDTSNSFEVLVVEDTQGMDNLACESQTTTSEEVVE 2024 INQTTNKTTYKPN WCLRCLWSTKPV+TSNSFEVL VEDTQGMDNLACESQT TSEEVVE Sbjct 1977 INQTTNKTTYKPNTWCLRCLWSTKPVETSNSFEVLEVEDTQGMDNLACESQTPTSEEVVE 2036 Query 2025 NPTVQKEIIECDVKTTEVVGNVILKPSEEGVKVTQELGHEDLMAAYVEETSITIKKPNEL 2084 NPT+QKE+IECDVKT EVVGNVILKPSEEGVKVTQELGHEDLMAAYVEETSITIKKPNEL Sbjct 2037 NPTIQKEVIECDVKTIEVVGNVILKPSEEGVKVTQELGHEDLMAAYVEETSITIKKPNEL 2096 Query 2085 SLALGLKTLATHGAAAINSVPWSKILAYVKPFLGQTAVITSNCIKKCVQRVFSNYMPYVI 2144 SLALGL+TLATHGAAAINSVPWSKILAYVKPFLGQ AV T+NCIK+CVQRVF+NYMPYVI Sbjct 2097 SLALGLRTLATHGAAAINSVPWSKILAYVKPFLGQAAVTTTNCIKRCVQRVFNNYMPYVI 2156 Query 2145 TLLFQLCTFTKSTNSRIKASLPTTIAKNSVKSVAKLCLDVCINYVKSPKFSKLFTIVMWL 2204 TLLFQLCTFT+STNSRI+ASLPTTIAKNSVKSVAKLCLDVCINYVKSPKFSKLFTI MWL Sbjct 2157 TLLFQLCTFTRSTNSRIRASLPTTIAKNSVKSVAKLCLDVCINYVKSPKFSKLFTIAMWL 2216 Query 2205 LLLSICLGSLTYVTAVLGVCLSSLGVPSYCDGVRELYINSSNVTTMDFCQGYFPCSVCLS 2264 LLLSICLGSL YVTA GV LS+LG+PSYCDGVRE Y+NSSNVTTMDFC+G F CSVCL+ Sbjct 2217 LLLSICLGSLIYVTAAFGVLLSNLGIPSYCDGVRESYVNSSNVTTMDFCEGSFLCSVCLN 2276 Query 2265 GLDSLDSYPALETIQVTISSYKLDLTFLGLAAEWLLAYMLFTKFFYLLGLSAIMQAFFGY 2324 GLDSLDSYPALETIQVTISSYKLDLT LGLAAEW LAYMLFTKFFYLLGLSAIMQ FFGY Sbjct 2277 GLDSLDSYPALETIQVTISSYKLDLTSLGLAAEWFLAYMLFTKFFYLLGLSAIMQVFFGY 2336 Query 2325 FASHFISNSWLMWFIISIVQMAPVSAMVRMYIFFASFYYVWKSYVHIMDGCTSSTCMMCY 2384 FASHFISNSWLMWFIISIVQMAPVSAMVRMYIFFA YYVWKSYVHIMDGCTSSTCMMCY Sbjct 2337 FASHFISNSWLMWFIISIVQMAPVSAMVRMYIFFAFCYYVWKSYVHIMDGCTSSTCMMCY 2396 Query 2385 KRNRATRVECTTIVNGVKRSFYVYANGGRGFCKAHNWNCLNCDTFCAGSTFISDEVARDL 2444 KRNRATRVECTTIVNG+KRSFYVYANGGRGFCKAHNWNCLNCDTFCAGSTFISDEVARDL Sbjct 2397 KRNRATRVECTTIVNGMKRSFYVYANGGRGFCKAHNWNCLNCDTFCAGSTFISDEVARDL 2456 Query 2445 SLQFKRPINPTDQSAYVVDSVTVKNGALHLYFDKAGQKTYERHPLSHFVNLDNLRANNTK 2504 SLQFKRPINPTDQS+YVVDSV VKNGALHLYFDKAGQKTYERHPLSHFVNLDNLRANNTK Sbjct 2457 SLQFKRPINPTDQSSYVVDSVAVKNGALHLYFDKAGQKTYERHPLSHFVNLDNLRANNTK 2516 Query 2505 GSLPINVIVFDGKSKCEESAAKSASVYYSQLMCQPILLLDQALVSDVGDSTEVSVKMFDA 2564 GSLPINVIVFDGKSKC+ESAAKSASVYYSQLMCQPILLLDQALVSDVGDSTEVSVKMFDA Sbjct 2517 GSLPINVIVFDGKSKCDESAAKSASVYYSQLMCQPILLLDQALVSDVGDSTEVSVKMFDA 2576 Query 2565 YVDTFSATFSVPMEKLKALVATAHSELAKGVALDGVLSTFVSAARQGVVDTDVDTKDVIE 2624 YVDTFSATFSVPMEKLKALVATAHSELAKGVALDGVLSTFVSAARQGVVDTDVDTKDVIE Sbjct 2577 YVDTFSATFSVPMEKLKALVATAHSELAKGVALDGVLSTFVSAARQGVVDTDVDTKDVIE 2636 Query 2625 CLKLSHHSDIEVTGDSCNNFMLTYNKVENMTPRDLGACIDCNARHINAQVAKSHNVSLVW 2684 CLKLSHHSD+EVTGDSCNNFMLTYNKVENMTPRDLGACIDCNARHINAQVAKSHNVSL+W Sbjct 2637 CLKLSHHSDLEVTGDSCNNFMLTYNKVENMTPRDLGACIDCNARHINAQVAKSHNVSLIW 2696 Query 2685 NVKDYMSLSEQLRKQIRSAAKKNNIPFRLTCATTRQVVNVITTKISLKGGKVVSTWFKLL 2744 NVKDYMSLSEQLRKQIRSAAKKNNIPFRLTCATTRQVVN ITTKISLKGGK+VSTWFKL+ Sbjct 2697 NVKDYMSLSEQLRKQIRSAAKKNNIPFRLTCATTRQVVNAITTKISLKGGKIVSTWFKLM 2756 Query 2745 LKVTLLCVLAALFCYVIMPVHSLSVHDGYTNEIIGYKAIQDGVTRDIVSTDDCFANKHAG 2804 LK TLLCVLAALFCY+IMPVHSLSVHDGYTNEIIGYKAIQDGVTRDI++TDDCFANKHAG Sbjct 2757 LKATLLCVLAALFCYIIMPVHSLSVHDGYTNEIIGYKAIQDGVTRDIMATDDCFANKHAG 2816 Query 2805 FDSWFSQRGGSYRNDKNCPVVAAIITREIGFIVPGLPGTVLRALNGDFLHFLPRVFSAVG 2864 FDSWFSQRGGSYRNDK+CPVVAAIITREIGFIVPGLPGTVLRA+NGDFLHFLPRVFSAVG Sbjct 2817 FDSWFSQRGGSYRNDKSCPVVAAIITREIGFIVPGLPGTVLRAINGDFLHFLPRVFSAVG 2876 Query 2865 NICYTPSKLIEYSDFATSACVLAAECTIFKDAMGKPVPYCYDTNLLEGSISYSELRPDTR 2924 NICYTPSKLIEYSDFATSACVLAAECTIFKDAMGKPVPYCYDTNLLEGSISYSELRPDTR Sbjct 2877 NICYTPSKLIEYSDFATSACVLAAECTIFKDAMGKPVPYCYDTNLLEGSISYSELRPDTR 2936 Query 2925 YVLMDGSIIQFPNTYLEGSVRVVTTFDAEYCRHGTCERSEVGVCLSTSGRWVLNNEHYRA 2984 YVLMDGSIIQFPNTYLEGSVRVVTTFDAEYCRHGTCERSE GVCLSTSGRWVLNNEHYRA Sbjct 2937 YVLMDGSIIQFPNTYLEGSVRVVTTFDAEYCRHGTCERSEAGVCLSTSGRWVLNNEHYRA 2996 Query 2985 LPGVFCGVDAMNLIANIFTPLVQPVGALDVSASVVAGGIIAILVTCAAYYFMKFRRAFGE 3044 LPGVFCGVDAMNLIANIFTPLVQPVGALDVSASVVAGGIIAILVTCAAYYFMKFRRAFGE Sbjct 2997 LPGVFCGVDAMNLIANIFTPLVQPVGALDVSASVVAGGIIAILVTCAAYYFMKFRRAFGE 3056 Query 3045 YNHVVAANALLFLMSFTILCLAPAYSFLPGVYSIFYLYLTFYFTNDVSFLAHLQWFAMFS 3104 YNHVVAANALLFLMSFTILCLAPAYSFLPGVYSIFYLYLTFYFTNDVSFLAHLQWFAMFS Sbjct 3057 YNHVVAANALLFLMSFTILCLAPAYSFLPGVYSIFYLYLTFYFTNDVSFLAHLQWFAMFS 3116 Query 3105 PIVPFWITAIYVFCISLKHFHWFFSNYLKKRVMFNGVTFSTFEEAALCTFLLNKEMYLRL 3164 PIVPFWITAIYVFCISLKH HWFF+NYL+KRVMFNGVTFSTFEEAALCTFLLNKEMYL+L Sbjct 3117 PIVPFWITAIYVFCISLKHCHWFFNNYLRKRVMFNGVTFSTFEEAALCTFLLNKEMYLKL 3176 Query 3165 RSETLLPLTQYNRYLALYNKYKYFSGALDTTSYREAACCHLAKALNDFSNSGADVLYQPP 3224 RSETLLPLTQYNRYLALYNKYKYFSGALDTTSYREAACCHLAKALNDFSNSGADVLYQPP Sbjct 3177 RSETLLPLTQYNRYLALYNKYKYFSGALDTTSYREAACCHLAKALNDFSNSGADVLYQPP 3236 Query 3225 QTSITSAVLQSGFRKMAFPSGKVEGCMVQVTCGTTTLNGLWLDDTVYCPRHVVCTAEDML 3284 QTSITSAVLQSGFRKMAFPSGKVEGCMVQVTCGTTTLNGLWLDDTVYCPRHV+CTAEDML Sbjct 3237 QTSITSAVLQSGFRKMAFPSGKVEGCMVQVTCGTTTLNGLWLDDTVYCPRHVICTAEDML 3296 Query 3285 NPNYDDLLIRKSNHSFLVQAGNVQLRVIGHSMQNCLLRLKVDTSNPKTPKYKFVRIQPGQ 3344 NPNY+DLLIRKSNHSFLVQAGNVQLRVIGHSMQNCLLRLKVDTSNPKTPKYKFVRIQPGQ Sbjct 3297 NPNYEDLLIRKSNHSFLVQAGNVQLRVIGHSMQNCLLRLKVDTSNPKTPKYKFVRIQPGQ 3356 Query 3345 TFSVLACYNGSPSGVYQCAMRPNHTIKGSFLNGSCGSVGFNIDYDCVSFCYMHHMELPTG 3404 TFSVLACYNGSPSGVYQCAMRPN+TIKGSFLNGSCGSVGFNIDYDCVSFCYMHHMELPTG Sbjct 3357 TFSVLACYNGSPSGVYQCAMRPNYTIKGSFLNGSCGSVGFNIDYDCVSFCYMHHMELPTG 3416 Query 3405 VHAGTDLEGKFYGPFVDRQTAQAAGTDTTITLNVLAWLYAAVINGDRWFLNRFTTTLNDF 3464 VHAGTDLEGKFYGPFVDRQTAQAAGTDTTITLNVLAWLYAAVINGDRWFLNRFTTTLNDF Sbjct 3417 VHAGTDLEGKFYGPFVDRQTAQAAGTDTTITLNVLAWLYAAVINGDRWFLNRFTTTLNDF 3476 Query 3465 NLVAMKYNYEPLTQDHVDILGPLSAQTGIAVLDMCAALKELLQNGMNGRTILGSTILEDE 3524 NLVAMKYNYEPLTQDHVDILGPLSAQTGIAVLDMCAALKELLQNGMNGRTILGSTILEDE Sbjct 3477 NLVAMKYNYEPLTQDHVDILGPLSAQTGIAVLDMCAALKELLQNGMNGRTILGSTILEDE 3536 Query 3525 FTPFDVVRQCSGVTFQGKFKKIVKGTHHWMLLTFLTSLLILVQSTQWSLFFFVYENAFLP 3584 FTPFDVVRQCSGVTFQGKFKKIVKGTHHWMLLTFLTSLLILVQSTQWSLFFFVYENAFLP Sbjct 3537 FTPFDVVRQCSGVTFQGKFKKIVKGTHHWMLLTFLTSLLILVQSTQWSLFFFVYENAFLP 3596 Query 3585 FALGIMAVAACAMLLVKHKHAFLCLFLLPSLATVAYFNMVYMPASWVMRIMTWLELADTS 3644 F LGIMA+AACAMLLVKHKHAFLCLFLLPSLATVAYFNMVYMPASWVMRIMTWLELADTS Sbjct 3597 FTLGIMAIAACAMLLVKHKHAFLCLFLLPSLATVAYFNMVYMPASWVMRIMTWLELADTS 3656 Query 3645 LSGYRLKDCVMYASALVLLILMTARTVYDDAARRVWTLMNVITLVYKVYYGNSLDQAISM 3704 LSGYRLKDCVMYASALVLL+LMTARTVYDDAARRVWTLMNVITLVYKVYYGNSLDQAISM Sbjct 3657 LSGYRLKDCVMYASALVLLVLMTARTVYDDAARRVWTLMNVITLVYKVYYGNSLDQAISM 3716 Query 3705 WALVISVTSNYSGVVTTIMFLARAIVFVCVEYYPLLFITGNTLQCIMLVYCFLGYCCCCY 3764 WALVISVTSNYSGVVTTIMFLARAIVFVCVEYYPLLFITGNTLQCIMLVYCFLGYCCCCY Sbjct 3717 WALVISVTSNYSGVVTTIMFLARAIVFVCVEYYPLLFITGNTLQCIMLVYCFLGYCCCCY 3776 Query 3765 FGLFCLLNRYFRLTLGVYDYLVSTQEFRYMNSQGLLPPKSSIDAFKLNIKLLGIGGKPCI 3824 FGLFCLLNRYFRLTLGVYDYLVSTQEFRYMNSQGLLPPKSSIDAFKLNIKLLGIGGKPCI Sbjct 3777 FGLFCLLNRYFRLTLGVYDYLVSTQEFRYMNSQGLLPPKSSIDAFKLNIKLLGIGGKPCI 3836 Query 3825 KVATVQSKMSDVKCTSVVLLSVLQQLRVESSSKLWAQCVQLHNDILLAKDTTEAFEKMVS 3884 KVATVQSKMSDVKCTSVVLLSVLQQLRVESSSKLWAQCVQLHNDILLAKDTTEAFEKMVS Sbjct 3837 KVATVQSKMSDVKCTSVVLLSVLQQLRVESSSKLWAQCVQLHNDILLAKDTTEAFEKMVS 3896 Query 3885 LLSVLLSMQGAVDINKLCEEMLDNRATLQAIASEFSSLPSYAAYATAQEAYEQAVSNGDS 3944 LLSVLLSMQGAVDINKLCEEMLDNRATLQAIASEFSSLPSYAAYATAQEAYEQAV+NGDS Sbjct 3897 LLSVLLSMQGAVDINKLCEEMLDNRATLQAIASEFSSLPSYAAYATAQEAYEQAVANGDS 3956 Query 3945 EVVLKKLKKSLNVAKSEFDHDAAMQRKLEKMADQAMTQMYKQARSEDKRAKVTSAMQTML 4004 EVVLKKLKKSLNVAKSEFD DAAMQRKLEKMADQAMTQMYKQARSEDKRAKVTSAMQTML Sbjct 3957 EVVLKKLKKSLNVAKSEFDRDAAMQRKLEKMADQAMTQMYKQARSEDKRAKVTSAMQTML 4016 Query 4005 FTMLRKLDNDALNNIINNARDGCVPLNIIPLTTAAKLMVVVPDYGTYKNTCDGNTFTYAS 4064 FTMLRKLDNDALNNIINNARDGCVPLNIIPLTTAAKLMVVVPDYGTYKNTCDGNTFTYAS Sbjct 4017 FTMLRKLDNDALNNIINNARDGCVPLNIIPLTTAAKLMVVVPDYGTYKNTCDGNTFTYAS 4076 Query 4065 ALWEIQQVVDADSKIVQLSEINMDNSPNLAWPLIVTALRANSAVKLQNNELSPVALRQMS 4124 ALWEIQQVVDADSKIVQLSEINMDNS NLAWPLIVTALRANSAVKLQNNELSPVALRQMS Sbjct 4077 ALWEIQQVVDADSKIVQLSEINMDNSQNLAWPLIVTALRANSAVKLQNNELSPVALRQMS 4136 Query 4125 CAAGTTQTACTDDNALAYYNNAKGGRFVLALLSDHQDLKWARFPKSDGTGTIYTELEPPC 4184 CAAGTTQTACTDDNALAYYNN+KGGRFVLALLSDHQDLKWARFPKSDGTGTIYTELEPPC Sbjct 4137 CAAGTTQTACTDDNALAYYNNSKGGRFVLALLSDHQDLKWARFPKSDGTGTIYTELEPPC 4196 Query 4185 RFVTDTPKGPKVKYLYFIKGLNNLNRGMVLGSLAATVRLQAGNATEVPANSTVLSFCAFA 4244 RFVTDTP+GPKVKYLYFIKGLNNLNRGMVLGSLAATVRLQAGNATEVPANS VLSFCAFA Sbjct 4197 RFVTDTPRGPKVKYLYFIKGLNNLNRGMVLGSLAATVRLQAGNATEVPANSAVLSFCAFA 4256 Query 4245 VDPAKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPEANMDQESFGGASCCLYCRCH 4304 VDPAKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPEANMDQESFGGASCCLYCRCH Sbjct 4257 VDPAKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPEANMDQESFGGASCCLYCRCH 4316 Query 4305 IDHPNPKGFCDLKGKYVQIPTTCANDPVGFTLRNTVCTVCGMWKGYGCSCDQLREPMMQS 4364 IDHPNPKGFCDLKGKYVQIP TCANDPVGFTL+NTVCTVCG WKGYGCSCDQLREPMMQS Sbjct 4317 IDHPNPKGFCDLKGKYVQIPATCANDPVGFTLKNTVCTVCGTWKGYGCSCDQLREPMMQS 4376 Query 4365 ADASTFLNGFAV 4376 ADASTFLNGFAV Sbjct 4377 ADASTFLNGFAV 4388 >RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Host translation inhibitor nsp1; Short=nsp1; AltName: Full=Leader protein; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p65 homolog; Contains: RecName: Full=Papain-like proteinase nsp3; Short=PL-PRO; AltName: Full=Non-structural protein 3; Short=nsp3; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; Contains: RecName: Full=3C-like proteinase nsp5; Short=3CL-PRO; Short=3CLp; AltName: Full=nsp5; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; Contains: RecName: Full=Viral protein genome-linked nsp9; AltName: Full=Non-structural protein 9; Short=nsp9; AltName: Full=RNA-capping enzyme subunit nsp9; AltName: Full=p12; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; Contains: RecName: Full=RNA-directed RNA polymerase nsp12; Short=Pol; Short=RdRp; AltName: Full=nsp12; Contains: RecName: Full=Helicase nsp13; Short=Hel; AltName: Full=nsp13; Contains: RecName: Full=Guanine-N7 methyltransferase nsp14; Short=ExoN; AltName: Full=nsp14; Contains: RecName: Full=Uridylate-specific endoribonuclease nsp15; AltName: Full=NendoU; AltName: Full=nsp15; Contains: RecName: Full=2'-O-methyltransferase nsp16; AltName: Full=nsp16 [Bat SARS CoV Rp3/2004] Sequence ID: P0C6W6.1 Length: 7071 Range 1: 1 to 4376 Score:8517 bits(22099), Expect:0.0, Method:Compositional matrix adjust., Identities:4094/4377(94%), Positives:4244/4377(96%), Gaps:6/4377(0%) Query 1 MESLVLGVNEKTHVQLSLPVLQVRDVLVRGFGDSVEEALSEAREHLKNGTCGLVELEKGV 60 MESLVLG+NEKTHVQLSLPVLQVRDVLVRGFGDSVEEALSEAREHLK+GTCG+VELEKGV Sbjct 1 MESLVLGINEKTHVQLSLPVLQVRDVLVRGFGDSVEEALSEAREHLKSGTCGIVELEKGV 60 Query 61 LPQLEQPYVFIKRSDALSTNHGHKVVELVAELDGIQFGRSGITLGVLVPHVGETPIAYRN 120 LPQ EQPYVFIKRSDA T+HGH+V ELVAELDG+Q+GRSGITLGVLVPHVGETPIAYRN Sbjct 61 LPQPEQPYVFIKRSDAQGTDHGHRVRELVAELDGVQYGRSGITLGVLVPHVGETPIAYRN 120 Query 121 VLLRKNGNKGAGGHSFGIDLKSYDLGDELGTDPIEDYEQNWNTKHGSGALRELTRELNGG 180 VLLRKNGNKGAGGHSFGIDLKSYDLGDELGTDPIEDYEQNWNTKHGSG LRELTRELNGG Sbjct 121 VLLRKNGNKGAGGHSFGIDLKSYDLGDELGTDPIEDYEQNWNTKHGSGVLRELTRELNGG 180 Query 181 VVTRYVDNNFCGPDGYPLECIKDFLARAGKSMCTLSEQLDYIESKRGVYCCREHEHEIVW 240 +TRYVDNNFCGPDGYPLECIKD LARAGKSMCTLSEQLDYIESKRGVYCCR+H HEI W Sbjct 181 ALTRYVDNNFCGPDGYPLECIKDLLARAGKSMCTLSEQLDYIESKRGVYCCRDHGHEIAW 240 Query 241 FTERSEKSYEHQTPFEIKSAKKFDTFKGECPKFVFPLNSKVKVIQPRVEKKKTEGFMGRI 300 FTERS+KSYEHQTPFEIKSAKKFDTFKGECPKFVFPLNSKVKVIQPRVEKKKTEGFMGRI Sbjct 241 FTERSDKSYEHQTPFEIKSAKKFDTFKGECPKFVFPLNSKVKVIQPRVEKKKTEGFMGRI 300 Query 301 RSVYPVATPQECNDMHLSTLMKCNHCDEVSWQTCDFLKATCEQCGTENLVCEGPTTCGYL 360 RSVYPVATPQECN+MHLSTLMKCNHCDEVSWQTCDFLKATCEQCGTENLV EGP TCGYL Sbjct 301 RSVYPVATPQECNNMHLSTLMKCNHCDEVSWQTCDFLKATCEQCGTENLVSEGPNTCGYL 360 Query 361 PTNAVVKMPCPACQDPEVGPEHSVADYHNHSNIETRLRKGGRTKCFGGCVFSYVGCYNKR 420 PTNAVVKMPCPACQDPE+GPEHS ADYHNHSNIETRLRKGGRT+CFGGCVF+YVGCYNKR Sbjct 361 PTNAVVKMPCPACQDPEIGPEHSAADYHNHSNIETRLRKGGRTRCFGGCVFAYVGCYNKR 420 Query 421 AYWVPRASANIGANHTGITGENVETLNEDLLEILNRERVNINIVGDFRFNEEVAIILASF 480 AYWVPRASA+IG+ HTGITG+NVETLNEDLLEIL+RERVNINIVGDF+ NEEVAIILASF Sbjct 421 AYWVPRASADIGSGHTGITGDNVETLNEDLLEILSRERVNINIVGDFQLNEEVAIILASF 480 Query 481 SASPSAFIETVKGLDYKSFKVIVESCGNYKVTNGKPVTGAWNIGQQRSILTPLCGFPSQA 540 SAS SAFI+T+K LDYKSFK IVESCGNYKVT GKP+ GAWNIGQ RS+LTPLCGFPSQA Sbjct 481 SASTSAFIDTIKSLDYKSFKTIVESCGNYKVTKGKPIKGAWNIGQHRSVLTPLCGFPSQA 540 Query 541 AGVIRSIFSRTLDAANHSILDLQRAAVTTLDGISEQSLRLVDAMVYTSDLLTNSVVVMAY 600 AGVIRSIFSRTLDAANHSI DLQRAAVT LD ISEQSLRLVDAMVYTS+LLTNSV++MAY Sbjct 541 AGVIRSIFSRTLDAANHSIPDLQRAAVTILDSISEQSLRLVDAMVYTSNLLTNSVIIMAY 600 Query 601 VTGGLVQQTMQWLSNMLGTAVDKLKPVFTWVEAKLSAGVEFLRDAWEILKFLITGVFDVI 660 VTGGLVQQT QWLSN+L T V+KL+P+F W+EAKLSAGVEFL+DAWEILKFLITGVFD++ Sbjct 601 VTGGLVQQTSQWLSNLLDTTVEKLRPIFAWIEAKLSAGVEFLKDAWEILKFLITGVFDIV 660 Query 661 KGQIQVATDNIKECVKIFLGVVNKALEMCLDQVTIAGTKLRALNLGEVFIAQSRGLYRQC 720 KGQIQVA+DNIK+CVK F+ VVNKALEMC+DQVTIAG KLR+LNLGEVFIAQS+GLYRQC Sbjct 661 KGQIQVASDNIKDCVKCFVDVVNKALEMCIDQVTIAGAKLRSLNLGEVFIAQSKGLYRQC 720 Query 721 IRGKEQLQLLMPLKAPKEVTFLEGDAHDTVLTSEEVVLKSGELEALETPIDSFTSGAVVG 780 IRGKEQLQLLMPLKAPKEVTFLEGD+HDTVLTSEEVVLK+GELEALETP+DSFT+GAVVG Sbjct 721 IRGKEQLQLLMPLKAPKEVTFLEGDSHDTVLTSEEVVLKNGELEALETPVDSFTNGAVVG 780 Query 781 TPVCINGLMLLELENKEQYCALSPGLLATNNVFRLKGGAPVKGVTFGEDTVLEVQGYKNV 840 TPVCINGLMLLE++ EQYCALSPGLLATNNVFRLKGGAP KGVTFGEDTV+EVQGYKNV Sbjct 781 TPVCINGLMLLEIKANEQYCALSPGLLATNNVFRLKGGAPTKGVTFGEDTVVEVQGYKNV 840 Query 841 KITFELDVRVDKVLNEKCSVYTVESGTEVTEFACVVAEAVVKTLQPVSDLLTPMGIDLDE 900 +ITFELD RVDKVLNEKCSVYTVESGTEVTEFACVVAEAVVKTLQPVSDLLT MGIDLDE Sbjct 841 RITFELDERVDKVLNEKCSVYTVESGTEVTEFACVVAEAVVKTLQPVSDLLTNMGIDLDE 900 Query 901 WSVATFYLFDDAGEEKLSSRMYCSFYPPDEEEDCEECEDEE----ETCEHEYGTEDDYKG 956 WSVATFYLFDD+GEEKLSSRMYCSFYPPDEEEDCEE E+EE TCEHEYGTE+DYKG Sbjct 901 WSVATFYLFDDSGEEKLSSRMYCSFYPPDEEEDCEEYEEEEEVSERTCEHEYGTEEDYKG 960 Query 957 LPLEFGASTETPHVEEEEEEEDWLDDAIEAEPEPEPLPEEPVNQFVGYLKLTDNVAIKCI 1016 LPLEFGAST+ VEE+EEE DWLDDA+EAEPEPEPL EEPVNQ GYLKLTDNVAIKC+ Sbjct 961 LPLEFGASTDIIQVEEQEEE-DWLDDAVEAEPEPEPLHEEPVNQLTGYLKLTDNVAIKCV 1019 Query 1017 DIVKEAQSAKPTVIVNAANTHLKHGGGVAGALNKATNGAMQNESDEYIRQNGPLTVGGSC 1076 DIV+EAQ+A P VIVNAAN HLKHGGGVAGALNKATNGAMQ ESD YI+ NGPLTVGGSC Sbjct 1020 DIVEEAQNANPMVIVNAANIHLKHGGGVAGALNKATNGAMQKESDHYIKLNGPLTVGGSC 1079 Query 1077 LLSGHNLAEKCLHVVGPNLNAGEDVQLLKRAYENFNSQDVLLAPLLSAGIFGAKPLQSLK 1136 LLSGHNLA+KCLHVVGPNLNAGED+QLLK AYENFNSQD+LLAPLLSAGIFGAKPLQSL+ Sbjct 1080 LLSGHNLAKKCLHVVGPNLNAGEDIQLLKAAYENFNSQDILLAPLLSAGIFGAKPLQSLQ 1139 Query 1137 MCVEIVRTQVYLAVNDKSLYDQIVLDYLDSLKPKVESPNKEEEPKLEEPKAVQ-PVAEKP 1195 MCV+ VRTQVY+ VNDK LY+Q+V+DYLDSLKPKVE+P +E PK E PK + V +K Sbjct 1140 MCVQTVRTQVYIVVNDKVLYEQVVMDYLDSLKPKVEAPKQEVLPKAEYPKVDEKSVVQKT 1199 Query 1196 VDVKPKIKACIDEVTTTLEETKFLTNKLLLFADINGKLYQDSQNMLRGEDMSFLEKDAPY 1255 +DVKPKIKACIDEVTTTLEETKFLTNKLLLF DINGKLYQDS+NMLRGEDMSFLEKDAPY Sbjct 1200 IDVKPKIKACIDEVTTTLEETKFLTNKLLLFTDINGKLYQDSKNMLRGEDMSFLEKDAPY 1259 Query 1256 IVGDVITSGDITCVIIPAKKSGGTTEMLARALKEVPVAEYITTYPGQGCAGYTLEEAKTA 1315 +VGDVITSGDITCV+IP+KK+GGTTEML+RALK+VP+ EYITTYPGQGCAGYTLEEAKTA Sbjct 1260 MVGDVITSGDITCVVIPSKKAGGTTEMLSRALKKVPINEYITTYPGQGCAGYTLEEAKTA 1319 Query 1316 LKKCKSAFYVLPSETPNEKEEVLGTVSWNLREMLAHAEETRKLMPICLDVRAIMATIQRK 1375 LKKCKSAFYVLPSETPN KEE+LGTVSWNLREMLAHAEETRKLMP+C+DVRAIMATIQRK Sbjct 1320 LKKCKSAFYVLPSETPNAKEEILGTVSWNLREMLAHAEETRKLMPVCMDVRAIMATIQRK 1379 Query 1376 YKGIKVQEGIVDYGVRFFFYTSKEPVASIITKLNSLNEPLVTMPIGYVTHGLNLEEAARC 1435 YKGIK+QEGIVDYGVRFFFYTSKEPVASIITKLNSLNEPLVTMPIGYVTHG NLEEAARC Sbjct 1380 YKGIKIQEGIVDYGVRFFFYTSKEPVASIITKLNSLNEPLVTMPIGYVTHGFNLEEAARC 1439 Query 1436 MRSLKAPAVVSVSSPDAVTAYNGYLTSSSKTPEEYFVETTSLAGSYRDWSYSGQRTELGV 1495 MRSLKAPA+VSVSSPDAVT YNGYLTSSSKT E++FVET SLAGSYRDWSYSGQRTELGV Sbjct 1440 MRSLKAPAIVSVSSPDAVTTYNGYLTSSSKTSEDHFVETVSLAGSYRDWSYSGQRTELGV 1499 Query 1496 EFLKRGDKIVYHTTGSPIEFHLDGEVLPLDKLKSLLSLREVKTIKVFTTVDNTNLHTHIV 1555 EFLKRG+KIVYHT SP++FHLDGEVLPLDKLKSLLSLREVKTIKVFTTVDNTNLHT +V Sbjct 1500 EFLKRGEKIVYHTLESPVKFHLDGEVLPLDKLKSLLSLREVKTIKVFTTVDNTNLHTQLV 1559 Query 1556 DMSMTYGQQFGPTYLDGADVTKIKPHVNHEGKTFFVLPSDDTLRSEAFEYYHTIDESFLG 1615 DMSMTYGQQ GPTYL+GADVTKIKPHVNHEGKTFFVLPSDDTLRSEAFEYYHT+DESFLG Sbjct 1560 DMSMTYGQQLGPTYLEGADVTKIKPHVNHEGKTFFVLPSDDTLRSEAFEYYHTLDESFLG 1619 Query 1616 RYMSALNHTKKWKFPQVGGLTSIKWADNNCYLSSVLLALQQVEVKFNAPALQEAYYRARA 1675 RYMSALNHTKKWKFPQVGGLTSIKWADNNCYLSSVLLALQQ+EVKFNAPALQEAYYRARA Sbjct 1620 RYMSALNHTKKWKFPQVGGLTSIKWADNNCYLSSVLLALQQIEVKFNAPALQEAYYRARA 1679 Query 1676 GDAANFCALILAYSNKTVGELGDVRETMTHLLQHANLESAKRVLNVVCKHCGQKTTTLKG 1735 GDAANFCALILAYSNKTVGELGDVRETMTHLLQHANLESAKRVLNVVCKHCGQKTTTL G Sbjct 1680 GDAANFCALILAYSNKTVGELGDVRETMTHLLQHANLESAKRVLNVVCKHCGQKTTTLTG 1739 Query 1736 VEAVMYMGTLSYDELKTGVSIPCVCGRNATQYLVQQESSFVMMSAPPAEYKLQQGAFLCA 1795 VEAVMYMGTLSYD LK GVSIPCVCGR+ATQYLVQQESSFVMMSAPPAEYKLQQG FLCA Sbjct 1740 VEAVMYMGTLSYDNLKMGVSIPCVCGRDATQYLVQQESSFVMMSAPPAEYKLQQGTFLCA 1799 Query 1796 NEYTGNYQCGHYTHITAKETLYRVDGAHLTKMSEYKGPVTDVFYKETSYTTAIKPVSYKL 1855 NEYTGNYQCGHYTHITAKETLYR+DGAHLTKMSEYKGPVTDVFYKETSYTT IKPVSYKL Sbjct 1800 NEYTGNYQCGHYTHITAKETLYRIDGAHLTKMSEYKGPVTDVFYKETSYTTTIKPVSYKL 1859 Query 1856 DGVTYTEIEPKLDGYYKKGNAYYTEQPIDLVPTQPMPNASFDNFKLTCSNTKFADDLNQM 1915 DGVTYTEIEPKLDGYYKK NAYYTEQPIDL+PTQP+PNASFDNFKLTCSNTKFADDLNQM Sbjct 1860 DGVTYTEIEPKLDGYYKKDNAYYTEQPIDLIPTQPLPNASFDNFKLTCSNTKFADDLNQM 1919 Query 1916 TGFKKPASRELTVTFFPDLNGDVVAIDYRHYSTSFKKGAKLVHKPILWHINQTTNKTTYK 1975 TGF KPASREL+VTFFPDLNGDVVAIDYRHYS SFKKGAKL+HKPI+WHINQ T KTT+K Sbjct 1920 TGFTKPASRELSVTFFPDLNGDVVAIDYRHYSASFKKGAKLLHKPIVWHINQATTKTTFK 1979 Query 1976 PNIWCLRCLWSTKPVDTSNSFEVLVVEDTQGMDNLACESQTTTSEEVVENPTVQKEIIEC 2035 PN WCLRCLWSTKPVDTSNSFEVL VEDTQGMDNLACESQ T EEVVENPT+QKE+IEC Sbjct 1980 PNTWCLRCLWSTKPVDTSNSFEVLAVEDTQGMDNLACESQQPTPEEVVENPTIQKEVIEC 2039 Query 2036 DVKTTEVVGNVILKPSEEGVKVTQELGHEDLMAAYVEETSITIKKPNELSLALGLKTLAT 2095 DVKTTEVVGNVILKPS+EGVKVTQEL HEDLMAAYVE TSITIKKPNELSLALGLKT+AT Sbjct 2040 DVKTTEVVGNVILKPSDEGVKVTQELDHEDLMAAYVENTSITIKKPNELSLALGLKTIAT 2099 Query 2096 HGAAAINSVPWSKILAYVKPFLGQTAVITSNCIKKCVQRVFSNYMPYVITLLFQLCTFTK 2155 HG AAINSVPW KILAYVKPFLGQ AV TSNC K+ VQR+F+NYMPYV+TLLFQLCTFTK Sbjct 2100 HGIAAINSVPWGKILAYVKPFLGQAAVTTSNCAKRLVQRMFNNYMPYVLTLLFQLCTFTK 2159 Query 2156 STNSRIKASLPTTIAKNSVKSVAKLCLDVCINYVKSPKFSKLFTIVMWLLLLSICLGSLT 2215 STNSRI+ASLPTTIAKNSV+ + +LCLD INYVKSPKFSKLFTI MWLLLLSICLGSL Sbjct 2160 STNSRIRASLPTTIAKNSVRGIVRLCLDAGINYVKSPKFSKLFTIAMWLLLLSICLGSLI 2219 Query 2216 YVTAVLGVCLSSLGVPSYCDGVRELYINSSNVTTMDFCQGYFPCSVCLSGLDSLDSYPAL 2275 YVTA LGV LS+ G PSYC GVRE Y+NSSNVTTMDFC+G FPCSVCLSGLDSLDSYPAL Sbjct 2220 YVTAALGVLLSNFGAPSYCSGVRESYLNSSNVTTMDFCEGSFPCSVCLSGLDSLDSYPAL 2279 Query 2276 ETIQVTISSYKLDLTFLGLAAEWLLAYMLFTKFFYLLGLSAIMQAFFGYFASHFISNSWL 2335 ETIQVTISSYKLDLT LGLAAEW AYMLFTKFFYLLGLSAIMQ FFGYFASHFISNSWL Sbjct 2280 ETIQVTISSYKLDLTILGLAAEWFFAYMLFTKFFYLLGLSAIMQVFFGYFASHFISNSWL 2339 Query 2336 MWFIISIVQMAPVSAMVRMYIFFASFYYVWKSYVHIMDGCTSSTCMMCYKRNRATRVECT 2395 MWFIISIVQMAPVSAMVRMYIFFASFYY+WKSYVHIMDGCTSSTCMMCYKRNRATRVECT Sbjct 2340 MWFIISIVQMAPVSAMVRMYIFFASFYYIWKSYVHIMDGCTSSTCMMCYKRNRATRVECT 2399 Query 2396 TIVNGVKRSFYVYANGGRGFCKAHNWNCLNCDTFCAGSTFISDEVARDLSLQFKRPINPT 2455 TIVNG+KRSFYVYANGGRGFCK HNWNCLNCDTFCAGSTFISDEVARDLSLQFKRPINPT Sbjct 2400 TIVNGMKRSFYVYANGGRGFCKTHNWNCLNCDTFCAGSTFISDEVARDLSLQFKRPINPT 2459 Query 2456 DQSAYVVDSVTVKNGALHLYFDKAGQKTYERHPLSHFVNLDNLRANNTKGSLPINVIVFD 2515 DQS+YVVDSV VKNGALHLYFDKAGQKTYERHPLSHFVNLDNLRANNTKGSLPINVIVFD Sbjct 2460 DQSSYVVDSVAVKNGALHLYFDKAGQKTYERHPLSHFVNLDNLRANNTKGSLPINVIVFD 2519 Query 2516 GKSKCEESAAKSASVYYSQLMCQPILLLDQALVSDVGDSTEVSVKMFDAYVDTFSATFSV 2575 GKSKC+ESAAKSASVYYSQLMCQPILLLDQALVSDVGDSTEVSVKMFDAYVDTFSATFSV Sbjct 2520 GKSKCDESAAKSASVYYSQLMCQPILLLDQALVSDVGDSTEVSVKMFDAYVDTFSATFSV 2579 Query 2576 PMEKLKALVATAHSELAKGVALDGVLSTFVSAARQGVVDTDVDTKDVIECLKLSHHSDIE 2635 PMEKLKALVATAHSELAKGVALDGVLSTFVSA+RQGVVDTDVDTKDVIECLKLSHHSD+E Sbjct 2580 PMEKLKALVATAHSELAKGVALDGVLSTFVSASRQGVVDTDVDTKDVIECLKLSHHSDLE 2639 Query 2636 VTGDSCNNFMLTYNKVENMTPRDLGACIDCNARHINAQVAKSHNVSLVWNVKDYMSLSEQ 2695 VTGDSCNNFMLTYNKVENMTPRDLGACIDCNARHINAQVA+SHNVSL+WNVKDYMSLSEQ Sbjct 2640 VTGDSCNNFMLTYNKVENMTPRDLGACIDCNARHINAQVARSHNVSLIWNVKDYMSLSEQ 2699 Query 2696 LRKQIRSAAKKNNIPFRLTCATTRQVVNVITTKISLKGGKVVSTWFKLLLKVTLLCVLAA 2755 LRKQIRSAAKKNNIPFRLTCATTRQVVNVITTKISLKGGK+VSTWFK++LK TLLCVLAA Sbjct 2700 LRKQIRSAAKKNNIPFRLTCATTRQVVNVITTKISLKGGKIVSTWFKIMLKATLLCVLAA 2759 Query 2756 LFCYVIMPVHSLSVHDGYTNEIIGYKAIQDGVTRDIVSTDDCFANKHAGFDSWFSQRGGS 2815 L CY++MPVH LSVH GYTNEIIGYKAIQDGVTRDIVSTDDCFANKHAGFDSWFSQRGGS Sbjct 2760 LVCYIVMPVHILSVHGGYTNEIIGYKAIQDGVTRDIVSTDDCFANKHAGFDSWFSQRGGS 2819 Query 2816 YRNDKNCPVVAAIITREIGFIVPGLPGTVLRALNGDFLHFLPRVFSAVGNICYTPSKLIE 2875 Y+NDK+CPVVAAIITREIGFIVPGLPGTVLRA+NGDFLHFLPRVFSAVGNICYTPSKLIE Sbjct 2820 YKNDKSCPVVAAIITREIGFIVPGLPGTVLRAINGDFLHFLPRVFSAVGNICYTPSKLIE 2879 Query 2876 YSDFATSACVLAAECTIFKDAMGKPVPYCYDTNLLEGSISYSELRPDTRYVLMDGSIIQF 2935 YSDF+TSACVLAAECTIFKDAMGKPVPYCYDTNLLEGSISYSELRPDTRYVLMDGSIIQF Sbjct 2880 YSDFSTSACVLAAECTIFKDAMGKPVPYCYDTNLLEGSISYSELRPDTRYVLMDGSIIQF 2939 Query 2936 PNTYLEGSVRVVTTFDAEYCRHGTCERSEVGVCLSTSGRWVLNNEHYRALPGVFCGVDAM 2995 PN YLEGSVRVVTTFDAEYCRHGTCERSE G+CLSTSGRWVLNNEHYRALPGVFCGVDAM Sbjct 2940 PNAYLEGSVRVVTTFDAEYCRHGTCERSEAGICLSTSGRWVLNNEHYRALPGVFCGVDAM 2999 Query 2996 NLIANIFTPLVQPVGALDVSASVVAGGIIAILVTCAAYYFMKFRRAFGEYNHVVAANALL 3055 NLIANIFTPLVQPVGALDVSASVVAGGIIAILVTCAAYYFMKFRRAFGEYNHVVAANA L Sbjct 3000 NLIANIFTPLVQPVGALDVSASVVAGGIIAILVTCAAYYFMKFRRAFGEYNHVVAANAPL 3059 Query 3056 FLMSFTILCLAPAYSFLPGVYSIFYLYLTFYFTNDVSFLAHLQWFAMFSPIVPFWITAIY 3115 FLMSFTILCLAPAYSFLPGVYS+FYLYLTFYFTNDVSFLAHLQWFAMFSPIVPFWITAIY Sbjct 3060 FLMSFTILCLAPAYSFLPGVYSVFYLYLTFYFTNDVSFLAHLQWFAMFSPIVPFWITAIY 3119 Query 3116 VFCISLKHFHWFFSNYLKKRVMFNGVTFSTFEEAALCTFLLNKEMYLRLRSETLLPLTQY 3175 VFCISLKHFHWFF+NYL+KRV+FNGVTFSTFEEAALCTFLLNKEMYL+LRSETLLPLTQY Sbjct 3120 VFCISLKHFHWFFNNYLRKRVVFNGVTFSTFEEAALCTFLLNKEMYLKLRSETLLPLTQY 3179 Query 3176 NRYLALYNKYKYFSGALDTTSYREAACCHLAKALNDFSNSGADVLYQPPQTSITSAVLQS 3235 NRYLALYNKYKYFSGALDTTSYREAACCHLAKALNDFSNSGADVLYQPPQTSITSAVLQS Sbjct 3180 NRYLALYNKYKYFSGALDTTSYREAACCHLAKALNDFSNSGADVLYQPPQTSITSAVLQS 3239 Query 3236 GFRKMAFPSGKVEGCMVQVTCGTTTLNGLWLDDTVYCPRHVVCTAEDMLNPNYDDLLIRK 3295 GFRKMAFPSGKVEGCMVQVTCGTTTLNGLWLDDTVYCPRHV+CTAEDMLNPNY+DLLIRK Sbjct 3240 GFRKMAFPSGKVEGCMVQVTCGTTTLNGLWLDDTVYCPRHVICTAEDMLNPNYEDLLIRK 3299 Query 3296 SNHSFLVQAGNVQLRVIGHSMQNCLLRLKVDTSNPKTPKYKFVRIQPGQTFSVLACYNGS 3355 SNHSFLVQAGNVQLRVIGHSMQNCLLRLKVDTSNPKTPKYKFVRIQPGQTFSVLACYNGS Sbjct 3300 SNHSFLVQAGNVQLRVIGHSMQNCLLRLKVDTSNPKTPKYKFVRIQPGQTFSVLACYNGS 3359 Query 3356 PSGVYQCAMRPNHTIKGSFLNGSCGSVGFNIDYDCVSFCYMHHMELPTGVHAGTDLEGKF 3415 PSGVYQCAMRPNHTIKGSFLNGSCGSVGFNIDYDCVSFCYMHHMELPT VHAGTDLEGKF Sbjct 3360 PSGVYQCAMRPNHTIKGSFLNGSCGSVGFNIDYDCVSFCYMHHMELPTEVHAGTDLEGKF 3419 Query 3416 YGPFVDRQTAQAAGTDTTITLNVLAWLYAAVINGDRWFLNRFTTTLNDFNLVAMKYNYEP 3475 YGPFVDRQTAQAAGTDTTITLNVLAWLYAAVINGDRWFLNRFTTTLNDFNLVAMKYNYEP Sbjct 3420 YGPFVDRQTAQAAGTDTTITLNVLAWLYAAVINGDRWFLNRFTTTLNDFNLVAMKYNYEP 3479 Query 3476 LTQDHVDILGPLSAQTGIAVLDMCAALKELLQNGMNGRTILGSTILEDEFTPFDVVRQCS 3535 LTQDHVDILGPLSAQTGIAVLDMCAALKELLQNGMNGRTILGSTILEDEFTPFDVVRQCS Sbjct 3480 LTQDHVDILGPLSAQTGIAVLDMCAALKELLQNGMNGRTILGSTILEDEFTPFDVVRQCS 3539 Query 3536 GVTFQGKFKKIVKGTHHWMLLTFLTSLLILVQSTQWSLFFFVYENAFLPFALGIMAVAAC 3595 GVTFQGKFK+IVKGTHHWMLLTFLTSLLILVQSTQWSLFFFVYENAFLPF LGIMAVAAC Sbjct 3540 GVTFQGKFKRIVKGTHHWMLLTFLTSLLILVQSTQWSLFFFVYENAFLPFTLGIMAVAAC 3599 Query 3596 AMLLVKHKHAFLCLFLLPSLATVAYFNMVYMPASWVMRIMTWLELADTSLSGYRLKDCVM 3655 AMLLVKHKHAFLCLFLLPSLATVAYFNMVYMPASWVMRIMTWLELADTSLSGYRLKDCVM Sbjct 3600 AMLLVKHKHAFLCLFLLPSLATVAYFNMVYMPASWVMRIMTWLELADTSLSGYRLKDCVM 3659 Query 3656 YASALVLLILMTARTVYDDAARRVWTLMNVITLVYKVYYGNSLDQAISMWALVISVTSNY 3715 YASALVLL+LMTARTVYDDAARRVWTLMNVITLVYKVYYGN+LDQAISMWALVISVTSNY Sbjct 3660 YASALVLLVLMTARTVYDDAARRVWTLMNVITLVYKVYYGNALDQAISMWALVISVTSNY 3719 Query 3716 SGVVTTIMFLARAIVFVCVEYYPLLFITGNTLQCIMLVYCFLGYCCCCYFGLFCLLNRYF 3775 SGVVTTIMFLARAIVFVCVEYYPLLFITGNTLQCIMLVYCFLGYCCCCYFGLFCLLNRYF Sbjct 3720 SGVVTTIMFLARAIVFVCVEYYPLLFITGNTLQCIMLVYCFLGYCCCCYFGLFCLLNRYF 3779 Query 3776 RLTLGVYDYLVSTQEFRYMNSQGLLPPKSSIDAFKLNIKLLGIGGKPCIKVATVQSKMSD 3835 RLTLGVYDYLVSTQEFRYMNSQGLLPPKSSIDAFKLNIKLLGIGGKPCIKVATVQSKMSD Sbjct 3780 RLTLGVYDYLVSTQEFRYMNSQGLLPPKSSIDAFKLNIKLLGIGGKPCIKVATVQSKMSD 3839 Query 3836 VKCTSVVLLSVLQQLRVESSSKLWAQCVQLHNDILLAKDTTEAFEKMVSLLSVLLSMQGA 3895 VKCTSVVLLSVLQQLRVESSSKLWAQCVQLHNDILLAKDTTEAFEKMVSLLSVLLSMQGA Sbjct 3840 VKCTSVVLLSVLQQLRVESSSKLWAQCVQLHNDILLAKDTTEAFEKMVSLLSVLLSMQGA 3899 Query 3896 VDINKLCEEMLDNRATLQAIASEFSSLPSYAAYATAQEAYEQAVSNGDSEVVLKKLKKSL 3955 VDINKLCEEMLDNRATLQAIASEFSSLPSYAAYATAQEAYEQAV+NGDSEVVLKKLKKSL Sbjct 3900 VDINKLCEEMLDNRATLQAIASEFSSLPSYAAYATAQEAYEQAVANGDSEVVLKKLKKSL 3959 Query 3956 NVAKSEFDHDAAMQRKLEKMADQAMTQMYKQARSEDKRAKVTSAMQTMLFTMLRKLDNDA 4015 NVAKSEFD +AAMQRKLEKMADQAMTQMYKQARSEDKRAKVTSAMQTMLFTMLRKLDNDA Sbjct 3960 NVAKSEFDRNAAMQRKLEKMADQAMTQMYKQARSEDKRAKVTSAMQTMLFTMLRKLDNDA 4019 Query 4016 LNNIINNARDGCVPLNIIPLTTAAKLMVVVPDYGTYKNTCDGNTFTYASALWEIQQVVDA 4075 LNNIINNARDGCVPLNIIPLTTAAKLMVVVPDYGTYKNTCDGNTFTYASALWEIQQVVDA Sbjct 4020 LNNIINNARDGCVPLNIIPLTTAAKLMVVVPDYGTYKNTCDGNTFTYASALWEIQQVVDA 4079 Query 4076 DSKIVQLSEINMDNSPNLAWPLIVTALRANSAVKLQNNELSPVALRQMSCAAGTTQTACT 4135 DSKIVQLSEINM+NS NLAWPLIVTALRANSAVKLQNNELSPVALRQMSCAAGTTQTACT Sbjct 4080 DSKIVQLSEINMENSSNLAWPLIVTALRANSAVKLQNNELSPVALRQMSCAAGTTQTACT 4139 Query 4136 DDNALAYYNNAKGGRFVLALLSDHQDLKWARFPKSDGTGTIYTELEPPCRFVTDTPKGPK 4195 DDNALAYYNN+KGGRFVLALLSDHQDLKWARFPKSDGTGTIYTELEPPCRFVTDTPKGPK Sbjct 4140 DDNALAYYNNSKGGRFVLALLSDHQDLKWARFPKSDGTGTIYTELEPPCRFVTDTPKGPK 4199 Query 4196 VKYLYFIKGLNNLNRGMVLGSLAATVRLQAGNATEVPANSTVLSFCAFAVDPAKAYKDYL 4255 VKYL+FIKGLNNLNRGMVLGSLAATVRLQAGNATEVPANSTVLSFCAFAVDPAKAYKDYL Sbjct 4200 VKYLHFIKGLNNLNRGMVLGSLAATVRLQAGNATEVPANSTVLSFCAFAVDPAKAYKDYL 4259 Query 4256 ASGGQPITNCVKMLCTHTGTGQAITVTPEANMDQESFGGASCCLYCRCHIDHPNPKGFCD 4315 ASGGQPITNCVKMLCTHTGTGQAITVTPEANMDQESFGGASCCLYCRCHIDHPNPKGFCD Sbjct 4260 ASGGQPITNCVKMLCTHTGTGQAITVTPEANMDQESFGGASCCLYCRCHIDHPNPKGFCD 4319 Query 4316 LKGKYVQIPTTCANDPVGFTLRNTVCTVCGMWKGYGCSCDQLREPMMQSADASTFLN 4372 LKGKYVQIPTTCANDPVGFTLRNTVCTVCGMWKGYGCSCDQLREPMMQSADASTFLN Sbjct 4320 LKGKYVQIPTTCANDPVGFTLRNTVCTVCGMWKGYGCSCDQLREPMMQSADASTFLN 4376 >RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Host translation inhibitor nsp1; Short=nsp1; AltName: Full=Leader protein; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p65 homolog; Contains: RecName: Full=Papain-like proteinase nsp3; Short=PL-PRO; AltName: Full=Non-structural protein 3; Short=nsp3; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; Contains: RecName: Full=3C-like proteinase nsp5; Short=3CL-PRO; Short=3CLp; AltName: Full=nsp5; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; Contains: RecName: Full=Viral protein genome-linked nsp9; AltName: Full=Non-structural protein 9; Short=nsp9; AltName: Full=RNA-capping enzyme subunit nsp9; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; Contains: RecName: Full=RNA-directed RNA polymerase nsp12; Short=Pol; Short=RdRp; AltName: Full=nsp12; Contains: RecName: Full=Helicase nsp13; Short=Hel; AltName: Full=nsp13; Contains: RecName: Full=Guanine-N7 methyltransferase nsp14; Short=ExoN; AltName: Full=nsp14; Contains: RecName: Full=Uridylate-specific endoribonuclease nsp15; AltName: Full=NendoU; AltName: Full=nsp15; Contains: RecName: Full=2'-O-methyltransferase nsp16; AltName: Full=nsp16 [Bat CoV 279/2005] Sequence ID: P0C6V9.1 Length: 7079 Range 1: 1 to 4384 Score:8482 bits(22010), Expect:0.0, Method:Compositional matrix adjust., Identities:4108/4388(94%), Positives:4246/4388(96%), Gaps:20/4388(0%) Query 1 MESLVLGVNEKTHVQLSLPVLQVRDVLVRGFGDSVEEALSEAREHLKNGTCGLVELEKGV 60 MESL LGV+EKTHVQLSLPVLQVRDVLVRGFGDSVEEAL+EAREHLKNGTCGLVELEKGV Sbjct 1 MESLALGVSEKTHVQLSLPVLQVRDVLVRGFGDSVEEALAEAREHLKNGTCGLVELEKGV 60 Query 61 LPQLEQPYVFIKRSDALSTNHGHKVVELVAELDGIQFGRSGITLGVLVPHVGETPIAYRN 120 LPQLEQPYVFIKRSDA TNHG+KVVELVAELDGIQ+GRSG TLGVLVPHVGETP+AYRN Sbjct 61 LPQLEQPYVFIKRSDAQGTNHGYKVVELVAELDGIQYGRSGTTLGVLVPHVGETPVAYRN 120 Query 121 VLLRKNGNKGAGGHSFGIDLKSYDLGDELGTDPIEDYEQNWNTKHGSGALRELTRELNGG 180 VLLRKNGNKGAGGHS+GIDLKSYDLG ELGTDPIEDYEQNWNTKHG G LREL RELNGG Sbjct 121 VLLRKNGNKGAGGHSYGIDLKSYDLGVELGTDPIEDYEQNWNTKHGGGVLRELIRELNGG 180 Query 181 VVTRYVDNNFCGPDGYPLECIKDFLARAGKSMCTLSEQLDYIESKRGVYCCREHEHEIVW 240 TRYVDNNFCGPDGYPLECIKD LARAGKSMCTLSEQLDYIESKRGVYCCREHEHEIVW Sbjct 181 AFTRYVDNNFCGPDGYPLECIKDLLARAGKSMCTLSEQLDYIESKRGVYCCREHEHEIVW 240 Query 241 FTERSEKSYEHQTPFEIKSAKKFDTFKGECPKFVFPLNSKVKVIQPRVEKKKTEGFMGRI 300 FTERSEKSYE QTPFEIKSAKKFDTFKGECPKFVFPLNSKVKVIQPRVEKKKTEGFMGRI Sbjct 241 FTERSEKSYERQTPFEIKSAKKFDTFKGECPKFVFPLNSKVKVIQPRVEKKKTEGFMGRI 300 Query 301 RSVYPVATPQECNDMHLSTLMKCNHCDEVSWQTCDFLKATCEQCGTENLVCEGPTTCGYL 360 RSVYPVATPQECNDMHLSTLMKCNHCDEVSWQTCDFLKATCEQCGTENLVCEGPTTCGYL Sbjct 301 RSVYPVATPQECNDMHLSTLMKCNHCDEVSWQTCDFLKATCEQCGTENLVCEGPTTCGYL 360 Query 361 PTNAVVKMPCPACQDPEVGPEHSVADYHNHSNIETRLRKGGRTKCFGGCVFSYVGCYNKR 420 P NAVVKMPCPACQDPEVGPEHSVADYHNHSNIETRLRKGGRTKCFGGCVF+YVGCYNKR Sbjct 361 PANAVVKMPCPACQDPEVGPEHSVADYHNHSNIETRLRKGGRTKCFGGCVFAYVGCYNKR 420 Query 421 AYWVPRASANIGANHTGITGENVETLNEDLLEILNRERVNINIVGDFRFNEEVAIILASF 480 AYWVPRASANIGA+HTGITG+NVETLNEDL+EILNR+RVNINIVGDF NEEVAIILASF Sbjct 421 AYWVPRASANIGASHTGITGDNVETLNEDLMEILNRDRVNINIVGDFHLNEEVAIILASF 480 Query 481 SASPSAFIETVKGLDYKSFKVIVESCGNYKVTNGKPVTGAWNIGQQRSILTPLCGFPSQA 540 SAS AF++TVKGLDYK+FK IVESCGN+KVT G+ GAWNIGQ++SILTPL GFPSQA Sbjct 481 SASTCAFVDTVKGLDYKTFKDIVESCGNFKVTRGRAKKGAWNIGQEKSILTPLYGFPSQA 540 Query 541 AGVIRSIFSRTLDAANHSILDLQRAAVTTLDGISEQSLRLVDAMVYTSDLLTNSVVVMAY 600 AGVIRSIF+R LD ANHSI DLQRAA+T LDGISEQSLRL+DAMVYTSDLLTNSV+VMAY Sbjct 541 AGVIRSIFTRALDTANHSIPDLQRAAITILDGISEQSLRLIDAMVYTSDLLTNSVIVMAY 600 Query 601 VTGGLVQQTMQWLSNMLGTAVDKLKPVFTWVEAKLSAGVEFLRDAWEILKFLITGVFDVI 660 VTGGLVQQ QWLSNMLGT VDKLKPVFTWVEAKLSAG+EFLRDAWEILKFL+TGVFD++ Sbjct 601 VTGGLVQQITQWLSNMLGTTVDKLKPVFTWVEAKLSAGIEFLRDAWEILKFLVTGVFDIV 660 Query 661 KGQIQVATDNIKECVKIFLGVVNKALEMCLDQVTIAGTKLRALNLGEVFIAQSRGLYRQC 720 KGQIQVA+DN+KECVK FL V+NKALEMC+DQV IAG KLR LNLGEVFIAQS+GLYRQC Sbjct 661 KGQIQVASDNLKECVKAFLDVLNKALEMCIDQVIIAGAKLRTLNLGEVFIAQSKGLYRQC 720 Query 721 IRGKEQLQLLMPLKAPKEVTFLEGDAHDTVLTSEEVVLKSGELEALETPIDSFTSGAVVG 780 IRGKEQLQLLMPL+APKEVTF EGD+HDTV TSEEVVLK+GELEALETP+DSFT+GAV+G Sbjct 721 IRGKEQLQLLMPLRAPKEVTFFEGDSHDTVFTSEEVVLKNGELEALETPVDSFTNGAVIG 780 Query 781 TPVCINGLMLLELENKEQYCALSPGLLATNNVFRLKGGAPVKGVTFGEDTVLEVQGYKNV 840 TPVC+NGLMLLEL++KEQYCALSPGLLATNNVF LKGGAPVKGVTFGEDTVLEVQGYKNV Sbjct 781 TPVCVNGLMLLELKDKEQYCALSPGLLATNNVFSLKGGAPVKGVTFGEDTVLEVQGYKNV 840 Query 841 KITFELDVRVDKVLNEKCSVYTVESGTEVTEFACVVAEAVVKTLQPVSDLLTPMGIDLDE 900 KITFELD RVDKVLNEKCSVYTVESGTEVTEFACVVAEAVVKTLQPVSDLLT MGIDLDE Sbjct 841 KITFELDERVDKVLNEKCSVYTVESGTEVTEFACVVAEAVVKTLQPVSDLLTNMGIDLDE 900 Query 901 WSVATFYLFDDAGEEKLSSRMYCSFYPPDEEEDCEECEDEEETCE----HEYGTEDDYKG 956 WSVATFYLFDDAGEEKLSSRMYCSFYPPDEEEDCEE EDEEE E HEYGTEDDYKG Sbjct 901 WSVATFYLFDDAGEEKLSSRMYCSFYPPDEEEDCEEYEDEEEIPEETCEHEYGTEDDYKG 960 Query 957 LPLEFGASTETPHVEEEEEEEDWLDDAIEAEPEPEPLPEEPVNQFVGYLKLTDNVAIKCI 1016 LPLEFGASTE V+EEEEE+ L++AI A+PEPEPLPEEPVNQF GYLKLTDNVAIKC+ Sbjct 961 LPLEFGASTEIQQVDEEEEEDW-LEEAIAAKPEPEPLPEEPVNQFTGYLKLTDNVAIKCV 1019 Query 1017 DIVKEAQSAKPTVIVNAANTHLKHGGGVAGALNKATNGAMQNESDEYIRQNGPLTVGGSC 1076 DIVKEAQ AKPTVIVNAAN HLKHGGGVAGALNKATNGAMQ ESD+YI++NGPLTVGGSC Sbjct 1020 DIVKEAQHAKPTVIVNAANVHLKHGGGVAGALNKATNGAMQQESDDYIKKNGPLTVGGSC 1079 Query 1077 LLSGHNLAEKCLHVVGPNLNAGEDVQLLKRAYENFNSQDVLLAPLLSAGIFGAKPLQSLK 1136 LLSGHNLA+KC+HVVGPNLNAGEDVQLLK AY NFNSQDVLLAPLLSAGIFGAKPLQSLK Sbjct 1080 LLSGHNLAKKCMHVVGPNLNAGEDVQLLKAAYANFNSQDVLLAPLLSAGIFGAKPLQSLK 1139 Query 1137 MCVEIVRTQVYLAVNDKSLYDQIVLDYLDSLKPKVESPNKEEEPKLEEPKAVQ------- 1189 MCVE VRTQVY AVND+ LYD +VL YLDSLKPKVE+P +E +L+E AV+ Sbjct 1140 MCVETVRTQVYFAVNDQDLYDHVVLGYLDSLKPKVETPT-QENLELKEQPAVETLTQENL 1198 Query 1190 -----PVAEKPVDVKPKIKACIDEVTTTLEETKFLTNKLLLFADINGKLYQDSQNMLRGE 1244 PV EKPVDVK KA I+EV T+LEETKFLT++LLLFADINGKLYQDSQNMLRGE Sbjct 1199 ELEELPVIEKPVDVK--FKARIEEVNTSLEETKFLTSRLLLFADINGKLYQDSQNMLRGE 1256 Query 1245 DMSFLEKDAPYIVGDVITSGDITCVIIPAKKSGGTTEMLARALKEVPVAEYITTYPGQGC 1304 DM FLEKDAPYIVGDVI+SGDITCVIIPAKK+GGTTEMLA+ALK+VPV+EYITTYPGQGC Sbjct 1257 DMFFLEKDAPYIVGDVISSGDITCVIIPAKKAGGTTEMLAKALKKVPVSEYITTYPGQGC 1316 Query 1305 AGYTLEEAKTALKKCKSAFYVLPSETPNEKEEVLGTVSWNLREMLAHAEETRKLMPICLD 1364 AGYTLEEAKTAL+KCKS FYVLPS+TPN+KEE+LGTVSWNLREMLAHAEETRKLM IC+D Sbjct 1317 AGYTLEEAKTALRKCKSVFYVLPSKTPNDKEEILGTVSWNLREMLAHAEETRKLMLICMD 1376 Query 1365 VRAIMATIQRKYKGIKVQEGIVDYGVRFFFYTSKEPVASIITKLNSLNEPLVTMPIGYVT 1424 V+A+M+TI R+YKGIKVQEGIVDYGVRFFFYTSKEPVASIITKLN LNEPLVTMPIGYVT Sbjct 1377 VKALMSTIHRRYKGIKVQEGIVDYGVRFFFYTSKEPVASIITKLNLLNEPLVTMPIGYVT 1436 Query 1425 HGLNLEEAARCMRSLKAPAVVSVSSPDAVTAYNGYLTSSSKTPEEYFVETTSLAGSYRDW 1484 HGLNLEEAARCMRSLKAPAVVSVSSPDAVT YNGYLTSSSKT EE+F+ET SLAG YRDW Sbjct 1437 HGLNLEEAARCMRSLKAPAVVSVSSPDAVTTYNGYLTSSSKTSEEHFIETVSLAGMYRDW 1496 Query 1485 SYSGQRTELGVEFLKRGDKIVYHTTGSPIEFHLDGEVLPLDKLKSLLSLREVKTIKVFTT 1544 SYSGQRTELGVEFLKRGDK+VYHT GSPI+FHLDGEVL LDKLKSLLSLREV+TIKVFTT Sbjct 1497 SYSGQRTELGVEFLKRGDKVVYHTVGSPIQFHLDGEVLLLDKLKSLLSLREVRTIKVFTT 1556 Query 1545 VDNTNLHTHIVDMSMTYGQQFGPTYLDGADVTKIKPHVNHEGKTFFVLPSDDTLRSEAFE 1604 VDNTNLHT IVDMSMTYGQQFGPTYLDGADVTKIKPH HEGKTFFVLPSDDTLRSEAFE Sbjct 1557 VDNTNLHTQIVDMSMTYGQQFGPTYLDGADVTKIKPHAKHEGKTFFVLPSDDTLRSEAFE 1616 Query 1605 YYHTIDESFLGRYMSALNHTKKWKFPQVGGLTSIKWADNNCYLSSVLLALQQVEVKFNAP 1664 YYHT+DESFLGRYMSALNHTKKWKFPQ+GGLTSIKWADNNCYLSSVLLALQQ+EVKFNAP Sbjct 1617 YYHTLDESFLGRYMSALNHTKKWKFPQIGGLTSIKWADNNCYLSSVLLALQQIEVKFNAP 1676 Query 1665 ALQEAYYRARAGDAANFCALILAYSNKTVGELGDVRETMTHLLQHANLESAKRVLNVVCK 1724 ALQEAYYRARAGDAANFCALILAYSN+TVGELGDVRETMTHLLQHANLESAKRVLNVVCK Sbjct 1677 ALQEAYYRARAGDAANFCALILAYSNRTVGELGDVRETMTHLLQHANLESAKRVLNVVCK 1736 Query 1725 HCGQKTTTLKGVEAVMYMGTLSYDELKTGVSIPCVCGRNATQYLVQQESSFVMMSAPPAE 1784 CGQK+TTL GVEAVMYMGTLSY+ELKTGV+IPC+CGR+ATQYLVQQESSFVMMSAPP+E Sbjct 1737 TCGQKSTTLTGVEAVMYMGTLSYEELKTGVTIPCICGRDATQYLVQQESSFVMMSAPPSE 1796 Query 1785 YKLQQGAFLCANEYTGNYQCGHYTHITAKETLYRVDGAHLTKMSEYKGPVTDVFYKETSY 1844 Y LQQGAFLCANEYTG+YQCGHYTH+T KETLYR+DGA+LTKMSEYKGPVTDVFYKE SY Sbjct 1797 YTLQQGAFLCANEYTGSYQCGHYTHVTVKETLYRIDGAYLTKMSEYKGPVTDVFYKEISY 1856 Query 1845 TTAIKPVSYKLDGVTYTEIEPKLDGYYKKGNAYYTEQPIDLVPTQPMPNASFDNFKLTCS 1904 TT IKPVSYKLDGV YTEI+PKLD YYKK NAYYTEQPIDLVPTQP+PNASFDNFKLTCS Sbjct 1857 TTTIKPVSYKLDGVIYTEIQPKLDEYYKKDNAYYTEQPIDLVPTQPLPNASFDNFKLTCS 1916 Query 1905 NTKFADDLNQMTGFKKPASRELTVTFFPDLNGDVVAIDYRHYSTSFKKGAKLVHKPILWH 1964 NTKFADDLNQMTGFKKPASREL+VTFFPDLNGDVVAIDYRHYS SFKKGAKL+HKPI+WH Sbjct 1917 NTKFADDLNQMTGFKKPASRELSVTFFPDLNGDVVAIDYRHYSASFKKGAKLLHKPIIWH 1976 Query 1965 INQTTNKTTYKPNIWCLRCLWSTKPVDTSNSFEVLVVEDTQGMDNLACESQTTTSEEVVE 2024 INQTTNKTTYKPN WCLRCLWSTKPV+TSNSFEVL VEDTQGMDNLACESQT TSEEVVE Sbjct 1977 INQTTNKTTYKPNTWCLRCLWSTKPVETSNSFEVLEVEDTQGMDNLACESQTPTSEEVVE 2036 Query 2025 NPTVQKEIIECDVKTTEVVGNVILKPSEEGVKVTQELGHEDLMAAYVEETSITIKKPNEL 2084 NPT+QKE+IECDVKT EVVGNVILKPSEEGVKVTQELGHEDLMAAYVEETSITIKKPNEL Sbjct 2037 NPTIQKEVIECDVKTIEVVGNVILKPSEEGVKVTQELGHEDLMAAYVEETSITIKKPNEL 2096 Query 2085 SLALGLKTLATHGAAAINSVPWSKILAYVKPFLGQTAVITSNCIKKCVQRVFSNYMPYVI 2144 SLALGL+TLATHGAAAINSVPWSKILAYVKPFLGQ AV T+NCIK+CVQRVF+NYMPYVI Sbjct 2097 SLALGLRTLATHGAAAINSVPWSKILAYVKPFLGQAAVTTTNCIKRCVQRVFNNYMPYVI 2156 Query 2145 TLLFQLCTFTKSTNSRIKASLPTTIAKNSVKSVAKLCLDVCINYVKSPKFSKLFTIVMWL 2204 TLLFQLCTFT+STNSRI+ASLPTTIAKNSVKSVAKLCLDVCINYVKSPKFSKLFTI MWL Sbjct 2157 TLLFQLCTFTRSTNSRIRASLPTTIAKNSVKSVAKLCLDVCINYVKSPKFSKLFTIAMWL 2216 Query 2205 LLLSICLGSLTYVTAVLGVCLSSLGVPSYCDGVRELYINSSNVTTMDFCQGYFPCSVCLS 2264 LLLSICLGSL YVTA GV LS+LG+PSYCDGVRE Y+NSSNVTTMDFC+G F CSVCL+ Sbjct 2217 LLLSICLGSLIYVTAAFGVLLSNLGIPSYCDGVRESYVNSSNVTTMDFCEGSFLCSVCLN 2276 Query 2265 GLDSLDSYPALETIQVTISSYKLDLTFLGLAAEWLLAYMLFTKFFYLLGLSAIMQAFFGY 2324 GLDSLDSYPALETIQVTISSYKLDLT LGLAAEW LAYMLFTKFFYLLGLSAIMQ FFGY Sbjct 2277 GLDSLDSYPALETIQVTISSYKLDLTSLGLAAEWFLAYMLFTKFFYLLGLSAIMQVFFGY 2336 Query 2325 FASHFISNSWLMWFIISIVQMAPVSAMVRMYIFFASFYYVWKSYVHIMDGCTSSTCMMCY 2384 FASHFISNSWLMWFIISIVQMAPVSAMVRMYIFFA YYVWKSYVHIMDGCTSSTCMMCY Sbjct 2337 FASHFISNSWLMWFIISIVQMAPVSAMVRMYIFFAFCYYVWKSYVHIMDGCTSSTCMMCY 2396 Query 2385 KRNRATRVECTTIVNGVKRSFYVYANGGRGFCKAHNWNCLNCDTFCAGSTFISDEVARDL 2444 KRNRATRVECTTIVNG+KRSFYVYANGGRGFCKAHNWNCLNCDTFCAGSTFISDEVARDL Sbjct 2397 KRNRATRVECTTIVNGMKRSFYVYANGGRGFCKAHNWNCLNCDTFCAGSTFISDEVARDL 2456 Query 2445 SLQFKRPINPTDQSAYVVDSVTVKNGALHLYFDKAGQKTYERHPLSHFVNLDNLRANNTK 2504 SLQFKRPINPTDQS+YVVDSV VKNGALHLYFDKAGQKTYERHPLSHFVNLDNLRANNTK Sbjct 2457 SLQFKRPINPTDQSSYVVDSVAVKNGALHLYFDKAGQKTYERHPLSHFVNLDNLRANNTK 2516 Query 2505 GSLPINVIVFDGKSKCEESAAKSASVYYSQLMCQPILLLDQALVSDVGDSTEVSVKMFDA 2564 GSLPINVIVFDGKSKC+ESAAKSASVYYSQLMCQPILLLDQALVSDVGDSTEVSVKMFDA Sbjct 2517 GSLPINVIVFDGKSKCDESAAKSASVYYSQLMCQPILLLDQALVSDVGDSTEVSVKMFDA 2576 Query 2565 YVDTFSATFSVPMEKLKALVATAHSELAKGVALDGVLSTFVSAARQGVVDTDVDTKDVIE 2624 YVDTFSATFSVPMEKLKALVATAHSELAKGVALDGVLSTFVSAARQGVVDTDVDTKDVIE Sbjct 2577 YVDTFSATFSVPMEKLKALVATAHSELAKGVALDGVLSTFVSAARQGVVDTDVDTKDVIE 2636 Query 2625 CLKLSHHSDIEVTGDSCNNFMLTYNKVENMTPRDLGACIDCNARHINAQVAKSHNVSLVW 2684 CLKLSHHSD+EVTGDSCNNFMLTYNKVENMTPRDLGACIDCNARHINAQVAKSHNVSL+W Sbjct 2637 CLKLSHHSDLEVTGDSCNNFMLTYNKVENMTPRDLGACIDCNARHINAQVAKSHNVSLIW 2696 Query 2685 NVKDYMSLSEQLRKQIRSAAKKNNIPFRLTCATTRQVVNVITTKISLKGGKVVSTWFKLL 2744 NVKDYMSLSEQLRKQIRSAAKKNNIPFRLTCATTRQVVN ITTKISLKGGK+VSTWFKL+ Sbjct 2697 NVKDYMSLSEQLRKQIRSAAKKNNIPFRLTCATTRQVVNAITTKISLKGGKIVSTWFKLM 2756 Query 2745 LKVTLLCVLAALFCYVIMPVHSLSVHDGYTNEIIGYKAIQDGVTRDIVSTDDCFANKHAG 2804 LK TLLCVLAALFCY+IMPVHSLSVHDGYTNEIIGYKAIQDGVTRDI++TDDCFANKHAG Sbjct 2757 LKATLLCVLAALFCYIIMPVHSLSVHDGYTNEIIGYKAIQDGVTRDIMATDDCFANKHAG 2816 Query 2805 FDSWFSQRGGSYRNDKNCPVVAAIITREIGFIVPGLPGTVLRALNGDFLHFLPRVFSAVG 2864 FDSWFSQRGGSYRNDK+CPVVAAIITREIGFIVPGLPGTVLRA+NGDFLHFLPRVFSAVG Sbjct 2817 FDSWFSQRGGSYRNDKSCPVVAAIITREIGFIVPGLPGTVLRAINGDFLHFLPRVFSAVG 2876 Query 2865 NICYTPSKLIEYSDFATSACVLAAECTIFKDAMGKPVPYCYDTNLLEGSISYSELRPDTR 2924 NICYTPSKLIEYSDFATSACVLAAECTIFKDAMGKPVPYCYDTNLLEGSISYSELRPDTR Sbjct 2877 NICYTPSKLIEYSDFATSACVLAAECTIFKDAMGKPVPYCYDTNLLEGSISYSELRPDTR 2936 Query 2925 YVLMDGSIIQFPNTYLEGSVRVVTTFDAEYCRHGTCERSEVGVCLSTSGRWVLNNEHYRA 2984 YVLMDGSIIQFPNTYLEGSVRVVTTFDAEYCRHGTCERSE GVCLSTSGRWVLNNEHYRA Sbjct 2937 YVLMDGSIIQFPNTYLEGSVRVVTTFDAEYCRHGTCERSEAGVCLSTSGRWVLNNEHYRA 2996 Query 2985 LPGVFCGVDAMNLIANIFTPLVQPVGALDVSASVVAGGIIAILVTCAAYYFMKFRRAFGE 3044 LPGVFCGVDAMNLIANIFTPLVQPVGALDVSASVVAGGIIAILVTCAAYYFMKFRRAFGE Sbjct 2997 LPGVFCGVDAMNLIANIFTPLVQPVGALDVSASVVAGGIIAILVTCAAYYFMKFRRAFGE 3056 Query 3045 YNHVVAANALLFLMSFTILCLAPAYSFLPGVYSIFYLYLTFYFTNDVSFLAHLQWFAMFS 3104 YNHVVAANALLFLMSFTILCLAPAYSFLPGVYSIFYLYLTFYFTNDVSFLAHLQWFAMFS Sbjct 3057 YNHVVAANALLFLMSFTILCLAPAYSFLPGVYSIFYLYLTFYFTNDVSFLAHLQWFAMFS 3116 Query 3105 PIVPFWITAIYVFCISLKHFHWFFSNYLKKRVMFNGVTFSTFEEAALCTFLLNKEMYLRL 3164 PIVPFWITAIYVFCISLKH HWFF+NYL+KRVMFNGVTFSTFEEAALCTFLLNKEMYL+L Sbjct 3117 PIVPFWITAIYVFCISLKHCHWFFNNYLRKRVMFNGVTFSTFEEAALCTFLLNKEMYLKL 3176 Query 3165 RSETLLPLTQYNRYLALYNKYKYFSGALDTTSYREAACCHLAKALNDFSNSGADVLYQPP 3224 RSETLLPLTQYNRYLALYNKYKYFSGALDTTSYREAACCHLAKALNDFSNSGADVLYQPP Sbjct 3177 RSETLLPLTQYNRYLALYNKYKYFSGALDTTSYREAACCHLAKALNDFSNSGADVLYQPP 3236 Query 3225 QTSITSAVLQSGFRKMAFPSGKVEGCMVQVTCGTTTLNGLWLDDTVYCPRHVVCTAEDML 3284 QTSITSAVLQSGFRKMAFPSGKVEGCMVQVTCGTTTLNGLWLDDTVYCPRHV+CTAEDML Sbjct 3237 QTSITSAVLQSGFRKMAFPSGKVEGCMVQVTCGTTTLNGLWLDDTVYCPRHVICTAEDML 3296 Query 3285 NPNYDDLLIRKSNHSFLVQAGNVQLRVIGHSMQNCLLRLKVDTSNPKTPKYKFVRIQPGQ 3344 NPNY+DLLIRKSNHSFLVQAGNVQLRVIGHSMQNCLLRLKVDTSNPKTPKYKFVRIQPGQ Sbjct 3297 NPNYEDLLIRKSNHSFLVQAGNVQLRVIGHSMQNCLLRLKVDTSNPKTPKYKFVRIQPGQ 3356 Query 3345 TFSVLACYNGSPSGVYQCAMRPNHTIKGSFLNGSCGSVGFNIDYDCVSFCYMHHMELPTG 3404 TFSVLACYNGSPSGVYQCAMRPN+TIKGSFLNGSCGSVGFNIDYDCVSFCYMHHMELPTG Sbjct 3357 TFSVLACYNGSPSGVYQCAMRPNYTIKGSFLNGSCGSVGFNIDYDCVSFCYMHHMELPTG 3416 Query 3405 VHAGTDLEGKFYGPFVDRQTAQAAGTDTTITLNVLAWLYAAVINGDRWFLNRFTTTLNDF 3464 VHAGTDLEGKFYGPFVDRQTAQAAGTDTTITLNVLAWLYAAVINGDRWFLNRFTTTLNDF Sbjct 3417 VHAGTDLEGKFYGPFVDRQTAQAAGTDTTITLNVLAWLYAAVINGDRWFLNRFTTTLNDF 3476 Query 3465 NLVAMKYNYEPLTQDHVDILGPLSAQTGIAVLDMCAALKELLQNGMNGRTILGSTILEDE 3524 NLVAMKYNYEPLTQDHVDILGPLSAQTGIAVLDMCAALKELLQNGMNGRTILGSTILEDE Sbjct 3477 NLVAMKYNYEPLTQDHVDILGPLSAQTGIAVLDMCAALKELLQNGMNGRTILGSTILEDE 3536 Query 3525 FTPFDVVRQCSGVTFQGKFKKIVKGTHHWMLLTFLTSLLILVQSTQWSLFFFVYENAFLP 3584 FTPFDVVRQCSGVTFQGKFKKIVKGTHHWMLLTFLTSLLILVQSTQWSLFFFVYENAFLP Sbjct 3537 FTPFDVVRQCSGVTFQGKFKKIVKGTHHWMLLTFLTSLLILVQSTQWSLFFFVYENAFLP 3596 Query 3585 FALGIMAVAACAMLLVKHKHAFLCLFLLPSLATVAYFNMVYMPASWVMRIMTWLELADTS 3644 F LGIMA+AACAMLLVKHKHAFLCLFLLPSLATVAYFNMVYMPASWVMRIMTWLELADTS Sbjct 3597 FTLGIMAIAACAMLLVKHKHAFLCLFLLPSLATVAYFNMVYMPASWVMRIMTWLELADTS 3656 Query 3645 LSGYRLKDCVMYASALVLLILMTARTVYDDAARRVWTLMNVITLVYKVYYGNSLDQAISM 3704 LSGYRLKDCVMYASALVLL+LMTARTVYDDAARRVWTLMNVITLVYKVYYGNSLDQAISM Sbjct 3657 LSGYRLKDCVMYASALVLLVLMTARTVYDDAARRVWTLMNVITLVYKVYYGNSLDQAISM 3716 Query 3705 WALVISVTSNYSGVVTTIMFLARAIVFVCVEYYPLLFITGNTLQCIMLVYCFLGYCCCCY 3764 WALVISVTSNYSGVVTTIMFLARAIVFVCVEYYPLLFITGNTLQCIMLVYCFLGYCCCCY Sbjct 3717 WALVISVTSNYSGVVTTIMFLARAIVFVCVEYYPLLFITGNTLQCIMLVYCFLGYCCCCY 3776 Query 3765 FGLFCLLNRYFRLTLGVYDYLVSTQEFRYMNSQGLLPPKSSIDAFKLNIKLLGIGGKPCI 3824 FGLFCLLNRYFRLTLGVYDYLVSTQEFRYMNSQGLLPPKSSIDAFKLNIKLLGIGGKPCI Sbjct 3777 FGLFCLLNRYFRLTLGVYDYLVSTQEFRYMNSQGLLPPKSSIDAFKLNIKLLGIGGKPCI 3836 Query 3825 KVATVQSKMSDVKCTSVVLLSVLQQLRVESSSKLWAQCVQLHNDILLAKDTTEAFEKMVS 3884 KVATVQSKMSDVKCTSVVLLSVLQQLRVESSSKLWAQCVQLHNDILLAKDTTEAFEKMVS Sbjct 3837 KVATVQSKMSDVKCTSVVLLSVLQQLRVESSSKLWAQCVQLHNDILLAKDTTEAFEKMVS 3896 Query 3885 LLSVLLSMQGAVDINKLCEEMLDNRATLQAIASEFSSLPSYAAYATAQEAYEQAVSNGDS 3944 LLSVLLSMQGAVDINKLCEEMLDNRATLQAIASEFSSLPSYAAYATAQEAYEQAV+NGDS Sbjct 3897 LLSVLLSMQGAVDINKLCEEMLDNRATLQAIASEFSSLPSYAAYATAQEAYEQAVANGDS 3956 Query 3945 EVVLKKLKKSLNVAKSEFDHDAAMQRKLEKMADQAMTQMYKQARSEDKRAKVTSAMQTML 4004 EVVLKKLKKSLNVAKSEFD DAAMQRKLEKMADQAMTQMYKQARSEDKRAKVTSAMQTML Sbjct 3957 EVVLKKLKKSLNVAKSEFDRDAAMQRKLEKMADQAMTQMYKQARSEDKRAKVTSAMQTML 4016 Query 4005 FTMLRKLDNDALNNIINNARDGCVPLNIIPLTTAAKLMVVVPDYGTYKNTCDGNTFTYAS 4064 FTMLRKLDNDALNNIINNARDGCVPLNIIPLTTAAKLMVVVPDYGTYKNTCDGNTFTYAS Sbjct 4017 FTMLRKLDNDALNNIINNARDGCVPLNIIPLTTAAKLMVVVPDYGTYKNTCDGNTFTYAS 4076 Query 4065 ALWEIQQVVDADSKIVQLSEINMDNSPNLAWPLIVTALRANSAVKLQNNELSPVALRQMS 4124 ALWEIQQVVDADSKIVQLSEINMDNS NLAWPLIVTALRANSAVKLQNNELSPVALRQMS Sbjct 4077 ALWEIQQVVDADSKIVQLSEINMDNSQNLAWPLIVTALRANSAVKLQNNELSPVALRQMS 4136 Query 4125 CAAGTTQTACTDDNALAYYNNAKGGRFVLALLSDHQDLKWARFPKSDGTGTIYTELEPPC 4184 CAAGTTQTACTDDNALAYYNN+KGGRFVLALLSDHQDLKWARFPKSDGTGTIYTELEPPC Sbjct 4137 CAAGTTQTACTDDNALAYYNNSKGGRFVLALLSDHQDLKWARFPKSDGTGTIYTELEPPC 4196 Query 4185 RFVTDTPKGPKVKYLYFIKGLNNLNRGMVLGSLAATVRLQAGNATEVPANSTVLSFCAFA 4244 RFVTDTP+GPKVKYLYFIKGLNNLNRGMVLGSLAATVRLQAGNATEVPANS VLSFCAFA Sbjct 4197 RFVTDTPRGPKVKYLYFIKGLNNLNRGMVLGSLAATVRLQAGNATEVPANSAVLSFCAFA 4256 Query 4245 VDPAKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPEANMDQESFGGASCCLYCRCH 4304 VDPAKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPEANMDQESFGGASCCLYCRCH Sbjct 4257 VDPAKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPEANMDQESFGGASCCLYCRCH 4316 Query 4305 IDHPNPKGFCDLKGKYVQIPTTCANDPVGFTLRNTVCTVCGMWKGYGCSCDQLREPMMQS 4364 IDHPNPKGFCDLKGKYVQIP TCANDPVGFTL+NTVCTVCG WKGYGCSCDQLREPMMQS Sbjct 4317 IDHPNPKGFCDLKGKYVQIPATCANDPVGFTLKNTVCTVCGTWKGYGCSCDQLREPMMQS 4376 Query 4365 ADASTFLN 4372 ADASTFLN Sbjct 4377 ADASTFLN 4384 >RecName: Full=Replicase polyprotein 1a; Short=pp1a; AltName: Full=ORF1a polyprotein; Contains: RecName: Full=Host translation inhibitor nsp1; AltName: Full=Leader protein; AltName: Full=Non-structural protein 1; Short=nsp1; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p65 homolog; Contains: RecName: Full=Papain-like protease nsp3; AltName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=PL2-PRO; AltName: Full=Papain-like proteinase; Short=PL-PRO; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; Contains: RecName: Full=3C-like proteinase nsp5; Short=3CL-PRO; Short=3CLp; AltName: Full=Main protease; Short=Mpro; AltName: Full=Non-structural protein 5; Short=nsp5; AltName: Full=SARS coronavirus main proteinase; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; Contains: RecName: Full=RNA-capping enzyme subunit nsp9; AltName: Full=Non-structural protein 9; Short=nsp9; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; Contains: RecName: Full=Non-structural protein 11; Short=nsp11 [Severe acute respiratory syndrome coronavirus 2] Sequence ID: P0DTC1.1 Length: 4405 Range 1: 1 to 4405 Score:7480 bits(19409), Expect:0.0, Method:Compositional matrix adjust., Identities:3542/4411(80%), Positives:3938/4411(89%), Gaps:41/4411(0%) Query 1 MESLVLGVNEKTHVQLSLPVLQVRDVLVRGFGDSVEEALSEAREHLKNGTCGLVELEKGV 60 MESLV G NEKTHVQLSLPVLQVRDVLVRGFGDSVEE LSEAR+HLK+GTCGLVE+EKGV Sbjct 1 MESLVPGFNEKTHVQLSLPVLQVRDVLVRGFGDSVEEVLSEARQHLKDGTCGLVEVEKGV 60 Query 61 LPQLEQPYVFIKRSDALSTNHGHKVVELVAELDGIQFGRSGITLGVLVPHVGETPIAYRN 120 LPQLEQPYVFIKRSDA + HGH +VELVAEL+GIQ+GRSG TLGVLVPHVGE P+AYR Sbjct 61 LPQLEQPYVFIKRSDARTAPHGHVMVELVAELEGIQYGRSGETLGVLVPHVGEIPVAYRK 120 Query 121 VLLRKNGNKGAGGHSFGIDLKSYDLGDELGTDPIEDYEQNWNTKHGSGALRELTRELNGG 180 VLLRKNGNKGAGGHS+G DLKS+DLGDELGTDP ED+++NWNTKH SG REL RELNGG Sbjct 121 VLLRKNGNKGAGGHSYGADLKSFDLGDELGTDPYEDFQENWNTKHSSGVTRELMRELNGG 180 Query 181 VVTRYVDNNFCGPDGYPLECIKDFLARAGKSMCTLSEQLDYIESKRGVYCCREHEHEIVW 240 TRYVDNNFCGPDGYPLECIKD LARAGK+ CTLSEQLD+I++KRGVYCCREHEHEI W Sbjct 181 AYTRYVDNNFCGPDGYPLECIKDLLARAGKASCTLSEQLDFIDTKRGVYCCREHEHEIAW 240 Query 241 FTERSEKSYEHQTPFEIKSAKKFDTFKGECPKFVFPLNSKVKVIQPRVEKKKTEGFMGRI 300 +TERSEKSYE QTPFEIK AKKFDTF GECP FVFPLNS +K IQPRVEKKK +GFMGRI Sbjct 241 YTERSEKSYELQTPFEIKLAKKFDTFNGECPNFVFPLNSIIKTIQPRVEKKKLDGFMGRI 300 Query 301 RSVYPVATPQECNDMHLSTLMKCNHCDEVSWQTCDFLKATCEQCGTENLVCEGPTTCGYL 360 RSVYPVA+P ECN M LSTLMKC+HC E SWQT DF+KATCE CGTENL EG TTCGYL Sbjct 301 RSVYPVASPNECNQMCLSTLMKCDHCGETSWQTGDFVKATCEFCGTENLTKEGATTCGYL 360 Query 361 PTNAVVKMPCPACQDPEVGPEHSVADYHNHSNIETRLRKGGRTKCFGGCVFSYVGCYNKR 420 P NAVVK+ CPAC + EVGPEHS+A+YHN S ++T LRKGGRT FGGCVFSYVGC+NK Sbjct 361 PQNAVVKIYCPACHNSEVGPEHSLAEYHNESGLKTILRKGGRTIAFGGCVFSYVGCHNKC 420 Query 421 AYWVPRASANIGANHTGITGENVETLNEDLLEILNRERVNINIVGDFRFNEEVAIILASF 480 AYWVPRASANIG NHTG+ GE E LN++LLEIL +E+VNINIVGDF+ NEE+AIILASF Sbjct 421 AYWVPRASANIGCNHTGVVGEGSEGLNDNLLEILQKEKVNINIVGDFKLNEEIAIILASF 480 Query 481 SASPSAFIETVKGLDYKSFKVIVESCGNYKVTNGKPVTGAWNIGQQRSILTPLCGFPSQA 540 SAS SAF+ETVKGLDYK+FK IVESCGN+KVT GK GAWNIG+Q+SIL+PL F S+A Sbjct 481 SASTSAFVETVKGLDYKAFKQIVESCGNFKVTKGKAKKGAWNIGEQKSILSPLYAFASEA 540 Query 541 AGVIRSIFSRTLDAANHSILDLQRAAVTTLDGISEQSLRLVDAMVYTSDLLTNSVVVMAY 600 A V+RSIFSRTL+ A +S+ LQ+AA+T LDGIS+ SLRL+DAM++TSDL TN++VVMAY Sbjct 541 ARVVRSIFSRTLETAQNSVRVLQKAAITILDGISQYSLRLIDAMMFTSDLATNNLVVMAY 600 Query 601 VTGGLVQQTMQWLSNMLGTAVDKLKPVFTWVEAKLSAGVEFLRDAWEILKFLITGVFDVI 660 +TGG+VQ T QWL+N+ GT +KLKPV W+E K GVEFLRD WEI+KF+ T +++ Sbjct 601 ITGGVVQLTSQWLTNIFGTVYEKLKPVLDWLEEKFKEGVEFLRDGWEIVKFISTCACEIV 660 Query 661 KGQIQVATDNIKECVKIFLGVVNKALEMCLDQVTIAGTKLRALNLGEVFIAQSRGLYRQC 720 GQI IKE V+ F +VNK L +C D + I G KL+ALNLGE F+ S+GLYR+C Sbjct 661 GGQIVTCAKEIKESVQTFFKLVNKFLALCADSIIIGGAKLKALNLGETFVTHSKGLYRKC 720 Query 721 IRGKEQLQLLMPLKAPKEVTFLEGDAHDTVLTSEEVVLKSGELEALETPIDSFTSGAVVG 780 ++ +E+ LLMPLKAPKE+ FLEG+ T + +EEVVLK+G+L+ LE P +VG Sbjct 721 VKSREETGLLMPLKAPKEIIFLEGETLPTEVLTEEVVLKTGDLQPLEQPTSEAVEAPLVG 780 Query 781 TPVCINGLMLLELENKEQYCALSPGLLATNNVFRLKGGAPVKGVTFGEDTVLEVQGYKNV 840 TPVCINGLMLLE+++ E+YCAL+P ++ TNN F LKGGAP K VTFG+DTV+EVQGYK+V Sbjct 781 TPVCINGLMLLEIKDTEKYCALAPNMMVTNNTFTLKGGAPTK-VTFGDDTVIEVQGYKSV 839 Query 841 KITFELDVRVDKVLNEKCSVYTVESGTEVTEFACVVAEAVVKTLQPVSDLLTPMGIDLDE 900 ITFELD R+DKVLNEKCS YTVE GTEV EFACVVA+AV+KTLQPVS+LLTP+GIDLDE Sbjct 840 NITFELDERIDKVLNEKCSAYTVELGTEVNEFACVVADAVIKTLQPVSELLTPLGIDLDE 899 Query 901 WSVATFYLFDDAGEEKLSSRMYCSFYPPDEEEDCEECEDEEE--TCEHEYGTEDDYKGLP 958 WS+AT+YLFD++GE KL+S MYCSFYPPDE+E+ +CE+EE + ++EYGTEDDY+G P Sbjct 900 WSMATYYLFDESGEFKLASHMYCSFYPPDEDEEEGDCEEEEFEPSTQYEYGTEDDYQGKP 959 Query 959 LEFGASTETPHVEEEEEEEDWLDD----------------------AIEAEPEPE----P 992 LEFGA++ EEE+EEDWLDD +E +P+ E P Sbjct 960 LEFGATSAALQ-PEEEQEEDWLDDDSQQTVGQQDGSEDNQTTTIQTIVEVQPQLEMELTP 1018 Query 993 LPEE-PVNQFVGYLKLTDNVAIKCIDIVKEAQSAKPTVIVNAANTHLKHGGGVAGALNKA 1051 + + VN F GYLKLTDNV IK DIV+EA+ KPTV+VNAAN +LKHGGGVAGALNKA Sbjct 1019 VVQTIEVNSFSGYLKLTDNVYIKNADIVEEAKKVKPTVVVNAANVYLKHGGGVAGALNKA 1078 Query 1052 TNGAMQNESDEYIRQNGPLTVGGSCLLSGHNLAEKCLHVVGPNLNAGEDVQLLKRAYENF 1111 TN AMQ ESD+YI NGPL VGGSC+LSGHNLA+ CLHVVGPN+N GED+QLLK AYENF Sbjct 1079 TNNAMQVESDDYIATNGPLKVGGSCVLSGHNLAKHCLHVVGPNVNKGEDIQLLKSAYENF 1138 Query 1112 NSQDVLLAPLLSAGIFGAKPLQSLKMCVEIVRTQVYLAVNDKSLYDQIVLDYLDSLKPK- 1170 N +VLLAPLLSAGIFGA P+ SL++CV+ VRT VYLAV DK+LYD++V +L+ K Sbjct 1139 NQHEVLLAPLLSAGIFGADPIHSLRVCVDTVRTNVYLAVFDKNLYDKLVSSFLEMKSEKQ 1198 Query 1171 -----VESPNKEEEPKLEEPKAVQPVAEKPVDVKPKIKACIDEVTTTLEETKFLTNKLLL 1225 E P +E +P + E K P E+ KIKAC++EVTTTLEETKFLT LLL Sbjct 1199 VEQKIAEIPKEEVKPFITESK---PSVEQRKQDDKKIKACVEEVTTTLEETKFLTENLLL 1255 Query 1226 FADINGKLYQDSQNMLRGEDMSFLEKDAPYIVGDVITSGDITCVIIPAKKSGGTTEMLAR 1285 + DING L+ DS ++ D++FL+KDAPYIVGDV+ G +T V+IP KK+GGTTEMLA+ Sbjct 1256 YIDINGNLHPDSATLVSDIDITFLKKDAPYIVGDVVQEGVLTAVVIPTKKAGGTTEMLAK 1315 Query 1286 ALKEVPVAEYITTYPGQGCAGYTLEEAKTALKKCKSAFYVLPSETPNEKEEVLGTVSWNL 1345 AL++VP YITTYPGQG GYT+EEAKT LKKCKSAFY+LPS NEK+E+LGTVSWNL Sbjct 1316 ALRKVPTDNYITTYPGQGLNGYTVEEAKTVLKKCKSAFYILPSIISNEKQEILGTVSWNL 1375 Query 1346 REMLAHAEETRKLMPICLDVRAIMATIQRKYKGIKVQEGIVDYGVRFFFYTSKEPVASII 1405 REMLAHAEETRKLMP+C++ +AI++TIQRKYKGIK+QEG+VDYG RF+FYTSK VAS+I Sbjct 1376 REMLAHAEETRKLMPVCVETKAIVSTIQRKYKGIKIQEGVVDYGARFYFYTSKTTVASLI 1435 Query 1406 TKLNSLNEPLVTMPIGYVTHGLNLEEAARCMRSLKAPAVVSVSSPDAVTAYNGYLTSSSK 1465 LN LNE LVTMP+GYVTHGLNLEEAAR MRSLK PA VSVSSPDAVTAYNGYLTSSSK Sbjct 1436 NTLNDLNETLVTMPLGYVTHGLNLEEAARYMRSLKVPATVSVSSPDAVTAYNGYLTSSSK 1495 Query 1466 TPEEYFVETTSLAGSYRDWSYSGQRTELGVEFLKRGDKIVYHTTGSPIEFHLDGEVLPLD 1525 TPEE+F+ET SLAGSY+DWSYSGQ T+LG+EFLKRGDK VY+T+ +P FHLDGEV+ D Sbjct 1496 TPEEHFIETISLAGSYKDWSYSGQSTQLGIEFLKRGDKSVYYTS-NPTTFHLDGEVITFD 1554 Query 1526 KLKSLLSLREVKTIKVFTTVDNTNLHTHIVDMSMTYGQQFGPTYLDGADVTKIKPHVNHE 1585 LK+LLSLREV+TIKVFTTVDN NLHT +VDMSMTYGQQFGPTYLDGADVTKIKPH +HE Sbjct 1555 NLKTLLSLREVRTIKVFTTVDNINLHTQVVDMSMTYGQQFGPTYLDGADVTKIKPHNSHE 1614 Query 1586 GKTFFVLPSDDTLRSEAFEYYHTIDESFLGRYMSALNHTKKWKFPQVGGLTSIKWADNNC 1645 GKTF+VLP+DDTLR EAFEYYHT D SFLGRYMSALNHTKKWK+PQV GLTSIKWADNNC Sbjct 1615 GKTFYVLPNDDTLRVEAFEYYHTTDPSFLGRYMSALNHTKKWKYPQVNGLTSIKWADNNC 1674 Query 1646 YLSSVLLALQQVEVKFNAPALQEAYYRARAGDAANFCALILAYSNKTVGELGDVRETMTH 1705 YL++ LL LQQ+E+KFN PALQ+AYYRARAG+AANFCALILAY NKTVGELGDVRETM++ Sbjct 1675 YLATALLTLQQIELKFNPPALQDAYYRARAGEAANFCALILAYCNKTVGELGDVRETMSY 1734 Query 1706 LLQHANLESAKRVLNVVCKHCGQKTTTLKGVEAVMYMGTLSYDELKTGVSIPCVCGRNAT 1765 L QHANL+S KRVLNVVCK CGQ+ TTLKGVEAVMYMGTLSY++ K GV IPC CG+ AT Sbjct 1735 LFQHANLDSCKRVLNVVCKTCGQQQTTLKGVEAVMYMGTLSYEQFKKGVQIPCTCGKQAT 1794 Query 1766 QYLVQQESSFVMMSAPPAEYKLQQGAFLCANEYTGNYQCGHYTHITAKETLYRVDGAHLT 1825 +YLVQQES FVMMSAPPA+Y+L+ G F CA+EYTGNYQCGHY HIT+KETLY +DGA LT Sbjct 1795 KYLVQQESPFVMMSAPPAQYELKHGTFTCASEYTGNYQCGHYKHITSKETLYCIDGALLT 1854 Query 1826 KMSEYKGPVTDVFYKETSYTTAIKPVSYKLDGVTYTEIEPKLDGYYKKGNAYYTEQPIDL 1885 K SEYKGP+TDVFYKE SYTT IKPV+YKLDGV TEI+PKLD YYKK N+Y+TEQPIDL Sbjct 1855 KSSEYKGPITDVFYKENSYTTTIKPVTYKLDGVVCTEIDPKLDNYYKKDNSYFTEQPIDL 1914 Query 1886 VPTQPMPNASFDNFKLTCSNTKFADDLNQMTGFKKPASRELTVTFFPDLNGDVVAIDYRH 1945 VP QP PNASFDNFK C N KFADDLNQ+TG+KKPASREL VTFFPDLNGDVVAIDY+H Sbjct 1915 VPNQPYPNASFDNFKFVCDNIKFADDLNQLTGYKKPASRELKVTFFPDLNGDVVAIDYKH 1974 Query 1946 YSTSFKKGAKLVHKPILWHINQTTNKTTYKPNIWCLRCLWSTKPVDTSNSFEVLVVEDTQ 2005 Y+ SFKKGAKL+HKPI+WH+N TNK TYKPN WC+RCLWSTKPV+TSNSF+VL ED Q Sbjct 1975 YTPSFKKGAKLLHKPIVWHVNNATNKATYKPNTWCIRCLWSTKPVETSNSFDVLKSEDAQ 2034 Query 2006 GMDNLACESQTTTSEEVVENPTVQKEIIECDVKTTEVVGNVILKPSEEGVKVTQELGHED 2065 GMDNLACE SEEVVENPT+QK+++EC+VKTTEVVG++ILKP+ +K+T+E+GH D Sbjct 2035 GMDNLACEDLKPVSEEVVENPTIQKDVLECNVKTTEVVGDIILKPANNSLKITEEVGHTD 2094 Query 2066 LMAAYVEETSITIKKPNELSLALGLKTLATHGAAAINSVPWSKILAYVKPFLGQTAVITS 2125 LMAAYV+ +S+TIKKPNELS LGLKTLATHG AA+NSVPW I Y KPFL + T+ Sbjct 2095 LMAAYVDNSSLTIKKPNELSRVLGLKTLATHGLAAVNSVPWDTIANYAKPFLNKVVSTTT 2154 Query 2126 NCIKKCVQRVFSNYMPYVITLLFQLCTFTKSTNSRIKASLPTTIAKNSVKSVAKLCLDVC 2185 N + +C+ RV +NYMPY TLL QLCTFT+STNSRIKAS+PTTIAKN+VKSV K CL+ Sbjct 2155 NIVTRCLNRVCTNYMPYFFTLLLQLCTFTRSTNSRIKASMPTTIAKNTVKSVGKFCLEAS 2214 Query 2186 INYVKSPKFSKLFTIVMWLLLLSICLGSLTYVTAVLGVCLSSLGVPSYCDGVRELYINSS 2245 NY+KSP FSKL I++W LLLS+CLGSL Y TA LGV +S+LG+PSYC G RE Y+NS+ Sbjct 2215 FNYLKSPNFSKLINIIIWFLLLSVCLGSLIYSTAALGVLMSNLGMPSYCTGYREGYLNST 2274 Query 2246 NVTTMDFCQGYFPCSVCLSGLDSLDSYPALETIQVTISSYKLDLTFLGLAAEWLLAYMLF 2305 NVT +C G PCSVCLSGLDSLD+YP+LETIQ+TISS+K DLT GL AEW LAY+LF Sbjct 2275 NVTIATYCTGSIPCSVCLSGLDSLDTYPSLETIQITISSFKWDLTAFGLVAEWFLAYILF 2334 Query 2306 TKFFYLLGLSAIMQAFFGYFASHFISNSWLMWFIISIVQMAPVSAMVRMYIFFASFYYVW 2365 T+FFY+LGL+AIMQ FF YFA HFISNSWLMW II++VQMAP+SAMVRMYIFFASFYYVW Sbjct 2335 TRFFYVLGLAAIMQLFFSYFAVHFISNSWLMWLIINLVQMAPISAMVRMYIFFASFYYVW 2394 Query 2366 KSYVHIMDGCTSSTCMMCYKRNRATRVECTTIVNGVKRSFYVYANGGRGFCKAHNWNCLN 2425 KSYVH++DGC SSTCMMCYKRNRATRVECTTIVNGV+RSFYVYANGG+GFCK HNWNC+N Sbjct 2395 KSYVHVVDGCNSSTCMMCYKRNRATRVECTTIVNGVRRSFYVYANGGKGFCKLHNWNCVN 2454 Query 2426 CDTFCAGSTFISDEVARDLSLQFKRPINPTDQSAYVVDSVTVKNGALHLYFDKAGQKTYE 2485 CDTFCAGSTFISDEVARDLSLQFKRPINPTDQS+Y+VDSVTVKNG++HLYFDKAGQKTYE Sbjct 2455 CDTFCAGSTFISDEVARDLSLQFKRPINPTDQSSYIVDSVTVKNGSIHLYFDKAGQKTYE 2514 Query 2486 RHPLSHFVNLDNLRANNTKGSLPINVIVFDGKSKCEESAAKSASVYYSQLMCQPILLLDQ 2545 RH LSHFVNLDNLRANNTKGSLPINVIVFDGKSKCEES+AKSASVYYSQLMCQPILLLDQ Sbjct 2515 RHSLSHFVNLDNLRANNTKGSLPINVIVFDGKSKCEESSAKSASVYYSQLMCQPILLLDQ 2574 Query 2546 ALVSDVGDSTEVSVKMFDAYVDTFSATFSVPMEKLKALVATAHSELAKGVALDGVLSTFV 2605 ALVSDVGDS EV+VKMFDAYV+TFS+TF+VPMEKLK LVATA +ELAK V+LD VLSTF+ Sbjct 2575 ALVSDVGDSAEVAVKMFDAYVNTFSSTFNVPMEKLKTLVATAEAELAKNVSLDNVLSTFI 2634 Query 2606 SAARQGVVDTDVDTKDVIECLKLSHHSDIEVTGDSCNNFMLTYNKVENMTPRDLGACIDC 2665 SAARQG VD+DV+TKDV+ECLKLSH SDIEVTGDSCNN+MLTYNKVENMTPRDLGACIDC Sbjct 2635 SAARQGFVDSDVETKDVVECLKLSHQSDIEVTGDSCNNYMLTYNKVENMTPRDLGACIDC 2694 Query 2666 NARHINAQVAKSHNVSLVWNVKDYMSLSEQLRKQIRSAAKKNNIPFRLTCATTRQVVNVI 2725 +ARHINAQVAKSHN++L+WNVKD+MSLSEQLRKQIRSAAKKNN+PF+LTCATTRQVVNV+ Sbjct 2695 SARHINAQVAKSHNIALIWNVKDFMSLSEQLRKQIRSAAKKNNLPFKLTCATTRQVVNVV 2754 Query 2726 TTKISLKGGKVVSTWFKLLLKVTLLCVLAALFCYVIMPVHSLSVHDGYTNEIIGYKAIQD 2785 TTKI+LKGGK+V+ W K L+KVTL+ + A Y+I PVH +S H +++EIIGYKAI Sbjct 2755 TTKIALKGGKIVNNWLKQLIKVTLVFLFVAAIFYLITPVHVMSKHTDFSSEIIGYKAIDG 2814 Query 2786 GVTRDIVSTDDCFANKHAGFDSWFSQRGGSYRNDKNCPVVAAIITREIGFIVPGLPGTVL 2845 GVTRDI STD CFANKHA FD+WFSQRGGSY NDK CP++AA+ITRE+GF+VPGLPGT+L Sbjct 2815 GVTRDIASTDTCFANKHADFDTWFSQRGGSYTNDKACPLIAAVITREVGFVVPGLPGTIL 2874 Query 2846 RALNGDFLHFLPRVFSAVGNICYTPSKLIEYSDFATSACVLAAECTIFKDAMGKPVPYCY 2905 R NGDFLHFLPRVFSAVGNICYTPSKLIEY+DFATSACVLAAECTIFKDA GKPVPYCY Sbjct 2875 RTTNGDFLHFLPRVFSAVGNICYTPSKLIEYTDFATSACVLAAECTIFKDASGKPVPYCY 2934 Query 2906 DTNLLEGSISYSELRPDTRYVLMDGSIIQFPNTYLEGSVRVVTTFDAEYCRHGTCERSEV 2965 DTN+LEGS++Y LRPDTRYVLMDGSIIQFPNTYLEGSVRVVTTFD+EYCRHGTCERSE Sbjct 2935 DTNVLEGSVAYESLRPDTRYVLMDGSIIQFPNTYLEGSVRVVTTFDSEYCRHGTCERSEA 2994 Query 2966 GVCLSTSGRWVLNNEHYRALPGVFCGVDAMNLIANIFTPLVQPVGALDVSASVVAGGIIA 3025 GVC+STSGRWVLNN++YR+LPGVFCGVDA+NL+ N+FTPL+QP+GALD+SAS+VAGGI+A Sbjct 2995 GVCVSTSGRWVLNNDYYRSLPGVFCGVDAVNLLTNMFTPLIQPIGALDISASIVAGGIVA 3054 Query 3026 ILVTCAAYYFMKFRRAFGEYNHVVAANALLFLMSFTILCLAPAYSFLPGVYSIFYLYLTF 3085 I+VTC AYYFM+FRRAFGEY+HVVA N LLFLMSFT+LCL P YSFLPGVYS+ YLYLTF Sbjct 3055 IVVTCLAYYFMRFRRAFGEYSHVVAFNTLLFLMSFTVLCLTPVYSFLPGVYSVIYLYLTF 3114 Query 3086 YFTNDVSFLAHLQWFAMFSPIVPFWITAIYVFCISLKHFHWFFSNYLKKRVMFNGVTFST 3145 Y TNDVSFLAH+QW MF+P+VPFWIT Y+ CIS KHF+WFFSNYLK+RV+FNGV+FST Sbjct 3115 YLTNDVSFLAHIQWMVMFTPLVPFWITIAYIICISTKHFYWFFSNYLKRRVVFNGVSFST 3174 Query 3146 FEEAALCTFLLNKEMYLRLRSETLLPLTQYNRYLALYNKYKYFSGALDTTSYREAACCHL 3205 FEEAALCTFLLNKEMYL+LRS+ LLPLTQYNRYLALYNKYKYFSGA+DTTSYREAACCHL Sbjct 3175 FEEAALCTFLLNKEMYLKLRSDVLLPLTQYNRYLALYNKYKYFSGAMDTTSYREAACCHL 3234 Query 3206 AKALNDFSNSGADVLYQPPQTSITSAVLQSGFRKMAFPSGKVEGCMVQVTCGTTTLNGLW 3265 AKALNDFSNSG+DVLYQPPQTSITSAVLQSGFRKMAFPSGKVEGCMVQVTCGTTTLNGLW Sbjct 3235 AKALNDFSNSGSDVLYQPPQTSITSAVLQSGFRKMAFPSGKVEGCMVQVTCGTTTLNGLW 3294 Query 3266 LDDTVYCPRHVVCTAEDMLNPNYDDLLIRKSNHSFLVQAGNVQLRVIGHSMQNCLLRLKV 3325 LDD VYCPRHV+CT+EDMLNPNY+DLLIRKSNH+FLVQAGNVQLRVIGHSMQNC+L+LKV Sbjct 3295 LDDVVYCPRHVICTSEDMLNPNYEDLLIRKSNHNFLVQAGNVQLRVIGHSMQNCVLKLKV 3354 Query 3326 DTSNPKTPKYKFVRIQPGQTFSVLACYNGSPSGVYQCAMRPNHTIKGSFLNGSCGSVGFN 3385 DT+NPKTPKYKFVRIQPGQTFSVLACYNGSPSGVYQCAMRPN TIKGSFLNGSCGSVGFN Sbjct 3355 DTANPKTPKYKFVRIQPGQTFSVLACYNGSPSGVYQCAMRPNFTIKGSFLNGSCGSVGFN 3414 Query 3386 IDYDCVSFCYMHHMELPTGVHAGTDLEGKFYGPFVDRQTAQAAGTDTTITLNVLAWLYAA 3445 IDYDCVSFCYMHHMELPTGVHAGTDLEG FYGPFVDRQTAQAAGTDTTIT+NVLAWLYAA Sbjct 3415 IDYDCVSFCYMHHMELPTGVHAGTDLEGNFYGPFVDRQTAQAAGTDTTITVNVLAWLYAA 3474 Query 3446 VINGDRWFLNRFTTTLNDFNLVAMKYNYEPLTQDHVDILGPLSAQTGIAVLDMCAALKEL 3505 VINGDRWFLNRFTTTLNDFNLVAMKYNYEPLTQDHVDILGPLSAQTGIAVLDMCA+LKEL Sbjct 3475 VINGDRWFLNRFTTTLNDFNLVAMKYNYEPLTQDHVDILGPLSAQTGIAVLDMCASLKEL 3534 Query 3506 LQNGMNGRTILGSTILEDEFTPFDVVRQCSGVTFQGKFKKIVKGTHHWMLLTFLTSLLIL 3565 LQNGMNGRTILGS +LEDEFTPFDVVRQCSGVTFQ K+ +KGTHHW+LLT LTSLL+L Sbjct 3535 LQNGMNGRTILGSALLEDEFTPFDVVRQCSGVTFQSAVKRTIKGTHHWLLLTILTSLLVL 3594 Query 3566 VQSTQWSLFFFVYENAFLPFALGIMAVAACAMLLVKHKHAFLCLFLLPSLATVAYFNMVY 3625 VQSTQWSLFFF+YENAFLPFA+GI+A++A AM+ VKHKHAFLCLFLLPSLATVAYFNMVY Sbjct 3595 VQSTQWSLFFFLYENAFLPFAMGIIAMSAFAMMFVKHKHAFLCLFLLPSLATVAYFNMVY 3654 Query 3626 MPASWVMRIMTWLELADTSLSGYRLKDCVMYASALVLLILMTARTVYDDAARRVWTLMNV 3685 MPASWVMRIMTWL++ DTSLSG++LKDCVMYASA+VLLILMTARTVYDD ARRVWTLMNV Sbjct 3655 MPASWVMRIMTWLDMVDTSLSGFKLKDCVMYASAVVLLILMTARTVYDDGARRVWTLMNV 3714 Query 3686 ITLVYKVYYGNSLDQAISMWALVISVTSNYSGVVTTIMFLARAIVFVCVEYYPLLFITGN 3745 +TLVYKVYYGN+LDQAISMWAL+ISVTSNYSGVVTT+MFLAR IVF+CVEY P+ FITGN Sbjct 3715 LTLVYKVYYGNALDQAISMWALIISVTSNYSGVVTTVMFLARGIVFMCVEYCPIFFITGN 3774 Query 3746 TLQCIMLVYCFLGYCCCCYFGLFCLLNRYFRLTLGVYDYLVSTQEFRYMNSQGLLPPKSS 3805 TLQCIMLVYCFLGY C CYFGLFCLLNRYFRLTLGVYDYLVSTQEFRYMNSQGLLPPK+S Sbjct 3775 TLQCIMLVYCFLGYFCTCYFGLFCLLNRYFRLTLGVYDYLVSTQEFRYMNSQGLLPPKNS 3834 Query 3806 IDAFKLNIKLLGIGGKPCIKVATVQSKMSDVKCTSVVLLSVLQQLRVESSSKLWAQCVQL 3865 IDAFKLNIKLLG+GGKPCIKVATVQSKMSDVKCTSVVLLSVLQQLRVESSSKLWAQCVQL Sbjct 3835 IDAFKLNIKLLGVGGKPCIKVATVQSKMSDVKCTSVVLLSVLQQLRVESSSKLWAQCVQL 3894 Query 3866 HNDILLAKDTTEAFEKMVSLLSVLLSMQGAVDINKLCEEMLDNRATLQAIASEFSSLPSY 3925 HNDILLAKDTTEAFEKMVSLLSVLLSMQGAVDINKLCEEMLDNRATLQAIASEFSSLPSY Sbjct 3895 HNDILLAKDTTEAFEKMVSLLSVLLSMQGAVDINKLCEEMLDNRATLQAIASEFSSLPSY 3954 Query 3926 AAYATAQEAYEQAVSNGDSEVVLKKLKKSLNVAKSEFDHDAAMQRKLEKMADQAMTQMYK 3985 AA+ATAQEAYEQAV+NGDSEVVLKKLKKSLNVAKSEFD DAAMQRKLEKMADQAMTQMYK Sbjct 3955 AAFATAQEAYEQAVANGDSEVVLKKLKKSLNVAKSEFDRDAAMQRKLEKMADQAMTQMYK 4014 Query 3986 QARSEDKRAKVTSAMQTMLFTMLRKLDNDALNNIINNARDGCVPLNIIPLTTAAKLMVVV 4045 QARSEDKRAKVTSAMQTMLFTMLRKLDNDALNNIINNARDGCVPLNIIPLTTAAKLMVV+ Sbjct 4015 QARSEDKRAKVTSAMQTMLFTMLRKLDNDALNNIINNARDGCVPLNIIPLTTAAKLMVVI 4074 Query 4046 PDYGTYKNTCDGNTFTYASALWEIQQVVDADSKIVQLSEINMDNSPNLAWPLIVTALRAN 4105 PDY TYKNTCDG TFTYASALWEIQQVVDADSKIVQLSEI+MDNSPNLAWPLIVTALRAN Sbjct 4075 PDYNTYKNTCDGTTFTYASALWEIQQVVDADSKIVQLSEISMDNSPNLAWPLIVTALRAN 4134 Query 4106 SAVKLQNNELSPVALRQMSCAAGTTQTACTDDNALAYYNNAKGGRFVLALLSDHQDLKWA 4165 SAVKLQNNELSPVALRQMSCAAGTTQTACTDDNALAYYN KGGRFVLALLSD QDLKWA Sbjct 4135 SAVKLQNNELSPVALRQMSCAAGTTQTACTDDNALAYYNTTKGGRFVLALLSDLQDLKWA 4194 Query 4166 RFPKSDGTGTIYTELEPPCRFVTDTPKGPKVKYLYFIKGLNNLNRGMVLGSLAATVRLQA 4225 RFPKSDGTGTIYTELEPPCRFVTDTPKGPKVKYLYFIKGLNNLNRGMVLGSLAATVRLQA Sbjct 4195 RFPKSDGTGTIYTELEPPCRFVTDTPKGPKVKYLYFIKGLNNLNRGMVLGSLAATVRLQA 4254 Query 4226 GNATEVPANSTVLSFCAFAVDPAKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPEA 4285 GNATEVPANSTVLSFCAFAVD AKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPEA Sbjct 4255 GNATEVPANSTVLSFCAFAVDAAKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPEA 4314 Query 4286 NMDQESFGGASCCLYCRCHIDHPNPKGFCDLKGKYVQIPTTCANDPVGFTLRNTVCTVCG 4345 NMDQESFGGASCCLYCRCHIDHPNPKGFCDLKGKYVQIPTTCANDPVGFTL+NTVCTVCG Sbjct 4315 NMDQESFGGASCCLYCRCHIDHPNPKGFCDLKGKYVQIPTTCANDPVGFTLKNTVCTVCG 4374 Query 4346 MWKGYGCSCDQLREPMMQSADASTFLNGFAV 4376 MWKGYGCSCDQLREPM+QSADA +FLNGFAV Sbjct 4375 MWKGYGCSCDQLREPMLQSADAQSFLNGFAV 4405 >RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Host translation inhibitor nsp1; AltName: Full=Leader protein; AltName: Full=Non-structural protein 1; Short=nsp1; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p65 homolog; Contains: RecName: Full=Papain-like protease nsp3; AltName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=PL2-PRO; AltName: Full=Papain-like proteinase; Short=PL-PRO; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; Contains: RecName: Full=3C-like proteinase nsp5; Short=3CL-PRO; Short=3CLp; AltName: Full=Main protease; Short=Mpro; AltName: Full=Non-structural protein 5; Short=nsp5; AltName: Full=SARS coronavirus main proteinase; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; Contains: RecName: Full=Viral protein genome-linked nsp9; AltName: Full=Non-structural protein 9; Short=nsp9; AltName: Full=RNA-capping enzyme subunit nsp9; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; Contains: RecName: Full=RNA-directed RNA polymerase nsp12; Short=Pol; Short=RdRp; AltName: Full=Non-structural protein 12; Short=nsp12; Contains: RecName: Full=Helicase nsp13; Short=Hel; AltName: Full=Non-structural protein 13; Short=nsp13; Contains: RecName: Full=Guanine-N7 methyltransferase nsp14; AltName: Full=Non-structural protein 14; Short=nsp14; AltName: Full=Proofreading exoribonuclease nsp14; Short=ExoN; Contains: RecName: Full=Uridylate-specific endoribonuclease nsp15; AltName: Full=NendoU; AltName: Full=Non-structural protein 15; Short=nsp15; Contains: RecName: Full=2'-O-methyltransferase nsp16; AltName: Full=Non-structural protein 16; Short=nsp16 [Severe acute respiratory syndrome coronavirus 2] Sequence ID: P0DTD1.1 Length: 7096 Range 1: 1 to 4401 Score:7448 bits(19325), Expect:0.0, Method:Compositional matrix adjust., Identities:3538/4407(80%), Positives:3934/4407(89%), Gaps:41/4407(0%) Query 1 MESLVLGVNEKTHVQLSLPVLQVRDVLVRGFGDSVEEALSEAREHLKNGTCGLVELEKGV 60 MESLV G NEKTHVQLSLPVLQVRDVLVRGFGDSVEE LSEAR+HLK+GTCGLVE+EKGV Sbjct 1 MESLVPGFNEKTHVQLSLPVLQVRDVLVRGFGDSVEEVLSEARQHLKDGTCGLVEVEKGV 60 Query 61 LPQLEQPYVFIKRSDALSTNHGHKVVELVAELDGIQFGRSGITLGVLVPHVGETPIAYRN 120 LPQLEQPYVFIKRSDA + HGH +VELVAEL+GIQ+GRSG TLGVLVPHVGE P+AYR Sbjct 61 LPQLEQPYVFIKRSDARTAPHGHVMVELVAELEGIQYGRSGETLGVLVPHVGEIPVAYRK 120 Query 121 VLLRKNGNKGAGGHSFGIDLKSYDLGDELGTDPIEDYEQNWNTKHGSGALRELTRELNGG 180 VLLRKNGNKGAGGHS+G DLKS+DLGDELGTDP ED+++NWNTKH SG REL RELNGG Sbjct 121 VLLRKNGNKGAGGHSYGADLKSFDLGDELGTDPYEDFQENWNTKHSSGVTRELMRELNGG 180 Query 181 VVTRYVDNNFCGPDGYPLECIKDFLARAGKSMCTLSEQLDYIESKRGVYCCREHEHEIVW 240 TRYVDNNFCGPDGYPLECIKD LARAGK+ CTLSEQLD+I++KRGVYCCREHEHEI W Sbjct 181 AYTRYVDNNFCGPDGYPLECIKDLLARAGKASCTLSEQLDFIDTKRGVYCCREHEHEIAW 240 Query 241 FTERSEKSYEHQTPFEIKSAKKFDTFKGECPKFVFPLNSKVKVIQPRVEKKKTEGFMGRI 300 +TERSEKSYE QTPFEIK AKKFDTF GECP FVFPLNS +K IQPRVEKKK +GFMGRI Sbjct 241 YTERSEKSYELQTPFEIKLAKKFDTFNGECPNFVFPLNSIIKTIQPRVEKKKLDGFMGRI 300 Query 301 RSVYPVATPQECNDMHLSTLMKCNHCDEVSWQTCDFLKATCEQCGTENLVCEGPTTCGYL 360 RSVYPVA+P ECN M LSTLMKC+HC E SWQT DF+KATCE CGTENL EG TTCGYL Sbjct 301 RSVYPVASPNECNQMCLSTLMKCDHCGETSWQTGDFVKATCEFCGTENLTKEGATTCGYL 360 Query 361 PTNAVVKMPCPACQDPEVGPEHSVADYHNHSNIETRLRKGGRTKCFGGCVFSYVGCYNKR 420 P NAVVK+ CPAC + EVGPEHS+A+YHN S ++T LRKGGRT FGGCVFSYVGC+NK Sbjct 361 PQNAVVKIYCPACHNSEVGPEHSLAEYHNESGLKTILRKGGRTIAFGGCVFSYVGCHNKC 420 Query 421 AYWVPRASANIGANHTGITGENVETLNEDLLEILNRERVNINIVGDFRFNEEVAIILASF 480 AYWVPRASANIG NHTG+ GE E LN++LLEIL +E+VNINIVGDF+ NEE+AIILASF Sbjct 421 AYWVPRASANIGCNHTGVVGEGSEGLNDNLLEILQKEKVNINIVGDFKLNEEIAIILASF 480 Query 481 SASPSAFIETVKGLDYKSFKVIVESCGNYKVTNGKPVTGAWNIGQQRSILTPLCGFPSQA 540 SAS SAF+ETVKGLDYK+FK IVESCGN+KVT GK GAWNIG+Q+SIL+PL F S+A Sbjct 481 SASTSAFVETVKGLDYKAFKQIVESCGNFKVTKGKAKKGAWNIGEQKSILSPLYAFASEA 540 Query 541 AGVIRSIFSRTLDAANHSILDLQRAAVTTLDGISEQSLRLVDAMVYTSDLLTNSVVVMAY 600 A V+RSIFSRTL+ A +S+ LQ+AA+T LDGIS+ SLRL+DAM++TSDL TN++VVMAY Sbjct 541 ARVVRSIFSRTLETAQNSVRVLQKAAITILDGISQYSLRLIDAMMFTSDLATNNLVVMAY 600 Query 601 VTGGLVQQTMQWLSNMLGTAVDKLKPVFTWVEAKLSAGVEFLRDAWEILKFLITGVFDVI 660 +TGG+VQ T QWL+N+ GT +KLKPV W+E K GVEFLRD WEI+KF+ T +++ Sbjct 601 ITGGVVQLTSQWLTNIFGTVYEKLKPVLDWLEEKFKEGVEFLRDGWEIVKFISTCACEIV 660 Query 661 KGQIQVATDNIKECVKIFLGVVNKALEMCLDQVTIAGTKLRALNLGEVFIAQSRGLYRQC 720 GQI IKE V+ F +VNK L +C D + I G KL+ALNLGE F+ S+GLYR+C Sbjct 661 GGQIVTCAKEIKESVQTFFKLVNKFLALCADSIIIGGAKLKALNLGETFVTHSKGLYRKC 720 Query 721 IRGKEQLQLLMPLKAPKEVTFLEGDAHDTVLTSEEVVLKSGELEALETPIDSFTSGAVVG 780 ++ +E+ LLMPLKAPKE+ FLEG+ T + +EEVVLK+G+L+ LE P +VG Sbjct 721 VKSREETGLLMPLKAPKEIIFLEGETLPTEVLTEEVVLKTGDLQPLEQPTSEAVEAPLVG 780 Query 781 TPVCINGLMLLELENKEQYCALSPGLLATNNVFRLKGGAPVKGVTFGEDTVLEVQGYKNV 840 TPVCINGLMLLE+++ E+YCAL+P ++ TNN F LKGGAP K VTFG+DTV+EVQGYK+V Sbjct 781 TPVCINGLMLLEIKDTEKYCALAPNMMVTNNTFTLKGGAPTK-VTFGDDTVIEVQGYKSV 839 Query 841 KITFELDVRVDKVLNEKCSVYTVESGTEVTEFACVVAEAVVKTLQPVSDLLTPMGIDLDE 900 ITFELD R+DKVLNEKCS YTVE GTEV EFACVVA+AV+KTLQPVS+LLTP+GIDLDE Sbjct 840 NITFELDERIDKVLNEKCSAYTVELGTEVNEFACVVADAVIKTLQPVSELLTPLGIDLDE 899 Query 901 WSVATFYLFDDAGEEKLSSRMYCSFYPPDEEEDCEECEDEEE--TCEHEYGTEDDYKGLP 958 WS+AT+YLFD++GE KL+S MYCSFYPPDE+E+ +CE+EE + ++EYGTEDDY+G P Sbjct 900 WSMATYYLFDESGEFKLASHMYCSFYPPDEDEEEGDCEEEEFEPSTQYEYGTEDDYQGKP 959 Query 959 LEFGASTETPHVEEEEEEEDWLDD----------------------AIEAEPEPE----P 992 LEFGA++ EEE+EEDWLDD +E +P+ E P Sbjct 960 LEFGATSAALQ-PEEEQEEDWLDDDSQQTVGQQDGSEDNQTTTIQTIVEVQPQLEMELTP 1018 Query 993 LPEE-PVNQFVGYLKLTDNVAIKCIDIVKEAQSAKPTVIVNAANTHLKHGGGVAGALNKA 1051 + + VN F GYLKLTDNV IK DIV+EA+ KPTV+VNAAN +LKHGGGVAGALNKA Sbjct 1019 VVQTIEVNSFSGYLKLTDNVYIKNADIVEEAKKVKPTVVVNAANVYLKHGGGVAGALNKA 1078 Query 1052 TNGAMQNESDEYIRQNGPLTVGGSCLLSGHNLAEKCLHVVGPNLNAGEDVQLLKRAYENF 1111 TN AMQ ESD+YI NGPL VGGSC+LSGHNLA+ CLHVVGPN+N GED+QLLK AYENF Sbjct 1079 TNNAMQVESDDYIATNGPLKVGGSCVLSGHNLAKHCLHVVGPNVNKGEDIQLLKSAYENF 1138 Query 1112 NSQDVLLAPLLSAGIFGAKPLQSLKMCVEIVRTQVYLAVNDKSLYDQIVLDYLDSLKPK- 1170 N +VLLAPLLSAGIFGA P+ SL++CV+ VRT VYLAV DK+LYD++V +L+ K Sbjct 1139 NQHEVLLAPLLSAGIFGADPIHSLRVCVDTVRTNVYLAVFDKNLYDKLVSSFLEMKSEKQ 1198 Query 1171 -----VESPNKEEEPKLEEPKAVQPVAEKPVDVKPKIKACIDEVTTTLEETKFLTNKLLL 1225 E P +E +P + E K P E+ KIKAC++EVTTTLEETKFLT LLL Sbjct 1199 VEQKIAEIPKEEVKPFITESK---PSVEQRKQDDKKIKACVEEVTTTLEETKFLTENLLL 1255 Query 1226 FADINGKLYQDSQNMLRGEDMSFLEKDAPYIVGDVITSGDITCVIIPAKKSGGTTEMLAR 1285 + DING L+ DS ++ D++FL+KDAPYIVGDV+ G +T V+IP KK+GGTTEMLA+ Sbjct 1256 YIDINGNLHPDSATLVSDIDITFLKKDAPYIVGDVVQEGVLTAVVIPTKKAGGTTEMLAK 1315 Query 1286 ALKEVPVAEYITTYPGQGCAGYTLEEAKTALKKCKSAFYVLPSETPNEKEEVLGTVSWNL 1345 AL++VP YITTYPGQG GYT+EEAKT LKKCKSAFY+LPS NEK+E+LGTVSWNL Sbjct 1316 ALRKVPTDNYITTYPGQGLNGYTVEEAKTVLKKCKSAFYILPSIISNEKQEILGTVSWNL 1375 Query 1346 REMLAHAEETRKLMPICLDVRAIMATIQRKYKGIKVQEGIVDYGVRFFFYTSKEPVASII 1405 REMLAHAEETRKLMP+C++ +AI++TIQRKYKGIK+QEG+VDYG RF+FYTSK VAS+I Sbjct 1376 REMLAHAEETRKLMPVCVETKAIVSTIQRKYKGIKIQEGVVDYGARFYFYTSKTTVASLI 1435 Query 1406 TKLNSLNEPLVTMPIGYVTHGLNLEEAARCMRSLKAPAVVSVSSPDAVTAYNGYLTSSSK 1465 LN LNE LVTMP+GYVTHGLNLEEAAR MRSLK PA VSVSSPDAVTAYNGYLTSSSK Sbjct 1436 NTLNDLNETLVTMPLGYVTHGLNLEEAARYMRSLKVPATVSVSSPDAVTAYNGYLTSSSK 1495 Query 1466 TPEEYFVETTSLAGSYRDWSYSGQRTELGVEFLKRGDKIVYHTTGSPIEFHLDGEVLPLD 1525 TPEE+F+ET SLAGSY+DWSYSGQ T+LG+EFLKRGDK VY+T+ +P FHLDGEV+ D Sbjct 1496 TPEEHFIETISLAGSYKDWSYSGQSTQLGIEFLKRGDKSVYYTS-NPTTFHLDGEVITFD 1554 Query 1526 KLKSLLSLREVKTIKVFTTVDNTNLHTHIVDMSMTYGQQFGPTYLDGADVTKIKPHVNHE 1585 LK+LLSLREV+TIKVFTTVDN NLHT +VDMSMTYGQQFGPTYLDGADVTKIKPH +HE Sbjct 1555 NLKTLLSLREVRTIKVFTTVDNINLHTQVVDMSMTYGQQFGPTYLDGADVTKIKPHNSHE 1614 Query 1586 GKTFFVLPSDDTLRSEAFEYYHTIDESFLGRYMSALNHTKKWKFPQVGGLTSIKWADNNC 1645 GKTF+VLP+DDTLR EAFEYYHT D SFLGRYMSALNHTKKWK+PQV GLTSIKWADNNC Sbjct 1615 GKTFYVLPNDDTLRVEAFEYYHTTDPSFLGRYMSALNHTKKWKYPQVNGLTSIKWADNNC 1674 Query 1646 YLSSVLLALQQVEVKFNAPALQEAYYRARAGDAANFCALILAYSNKTVGELGDVRETMTH 1705 YL++ LL LQQ+E+KFN PALQ+AYYRARAG+AANFCALILAY NKTVGELGDVRETM++ Sbjct 1675 YLATALLTLQQIELKFNPPALQDAYYRARAGEAANFCALILAYCNKTVGELGDVRETMSY 1734 Query 1706 LLQHANLESAKRVLNVVCKHCGQKTTTLKGVEAVMYMGTLSYDELKTGVSIPCVCGRNAT 1765 L QHANL+S KRVLNVVCK CGQ+ TTLKGVEAVMYMGTLSY++ K GV IPC CG+ AT Sbjct 1735 LFQHANLDSCKRVLNVVCKTCGQQQTTLKGVEAVMYMGTLSYEQFKKGVQIPCTCGKQAT 1794 Query 1766 QYLVQQESSFVMMSAPPAEYKLQQGAFLCANEYTGNYQCGHYTHITAKETLYRVDGAHLT 1825 +YLVQQES FVMMSAPPA+Y+L+ G F CA+EYTGNYQCGHY HIT+KETLY +DGA LT Sbjct 1795 KYLVQQESPFVMMSAPPAQYELKHGTFTCASEYTGNYQCGHYKHITSKETLYCIDGALLT 1854 Query 1826 KMSEYKGPVTDVFYKETSYTTAIKPVSYKLDGVTYTEIEPKLDGYYKKGNAYYTEQPIDL 1885 K SEYKGP+TDVFYKE SYTT IKPV+YKLDGV TEI+PKLD YYKK N+Y+TEQPIDL Sbjct 1855 KSSEYKGPITDVFYKENSYTTTIKPVTYKLDGVVCTEIDPKLDNYYKKDNSYFTEQPIDL 1914 Query 1886 VPTQPMPNASFDNFKLTCSNTKFADDLNQMTGFKKPASRELTVTFFPDLNGDVVAIDYRH 1945 VP QP PNASFDNFK C N KFADDLNQ+TG+KKPASREL VTFFPDLNGDVVAIDY+H Sbjct 1915 VPNQPYPNASFDNFKFVCDNIKFADDLNQLTGYKKPASRELKVTFFPDLNGDVVAIDYKH 1974 Query 1946 YSTSFKKGAKLVHKPILWHINQTTNKTTYKPNIWCLRCLWSTKPVDTSNSFEVLVVEDTQ 2005 Y+ SFKKGAKL+HKPI+WH+N TNK TYKPN WC+RCLWSTKPV+TSNSF+VL ED Q Sbjct 1975 YTPSFKKGAKLLHKPIVWHVNNATNKATYKPNTWCIRCLWSTKPVETSNSFDVLKSEDAQ 2034 Query 2006 GMDNLACESQTTTSEEVVENPTVQKEIIECDVKTTEVVGNVILKPSEEGVKVTQELGHED 2065 GMDNLACE SEEVVENPT+QK+++EC+VKTTEVVG++ILKP+ +K+T+E+GH D Sbjct 2035 GMDNLACEDLKPVSEEVVENPTIQKDVLECNVKTTEVVGDIILKPANNSLKITEEVGHTD 2094 Query 2066 LMAAYVEETSITIKKPNELSLALGLKTLATHGAAAINSVPWSKILAYVKPFLGQTAVITS 2125 LMAAYV+ +S+TIKKPNELS LGLKTLATHG AA+NSVPW I Y KPFL + T+ Sbjct 2095 LMAAYVDNSSLTIKKPNELSRVLGLKTLATHGLAAVNSVPWDTIANYAKPFLNKVVSTTT 2154 Query 2126 NCIKKCVQRVFSNYMPYVITLLFQLCTFTKSTNSRIKASLPTTIAKNSVKSVAKLCLDVC 2185 N + +C+ RV +NYMPY TLL QLCTFT+STNSRIKAS+PTTIAKN+VKSV K CL+ Sbjct 2155 NIVTRCLNRVCTNYMPYFFTLLLQLCTFTRSTNSRIKASMPTTIAKNTVKSVGKFCLEAS 2214 Query 2186 INYVKSPKFSKLFTIVMWLLLLSICLGSLTYVTAVLGVCLSSLGVPSYCDGVRELYINSS 2245 NY+KSP FSKL I++W LLLS+CLGSL Y TA LGV +S+LG+PSYC G RE Y+NS+ Sbjct 2215 FNYLKSPNFSKLINIIIWFLLLSVCLGSLIYSTAALGVLMSNLGMPSYCTGYREGYLNST 2274 Query 2246 NVTTMDFCQGYFPCSVCLSGLDSLDSYPALETIQVTISSYKLDLTFLGLAAEWLLAYMLF 2305 NVT +C G PCSVCLSGLDSLD+YP+LETIQ+TISS+K DLT GL AEW LAY+LF Sbjct 2275 NVTIATYCTGSIPCSVCLSGLDSLDTYPSLETIQITISSFKWDLTAFGLVAEWFLAYILF 2334 Query 2306 TKFFYLLGLSAIMQAFFGYFASHFISNSWLMWFIISIVQMAPVSAMVRMYIFFASFYYVW 2365 T+FFY+LGL+AIMQ FF YFA HFISNSWLMW II++VQMAP+SAMVRMYIFFASFYYVW Sbjct 2335 TRFFYVLGLAAIMQLFFSYFAVHFISNSWLMWLIINLVQMAPISAMVRMYIFFASFYYVW 2394 Query 2366 KSYVHIMDGCTSSTCMMCYKRNRATRVECTTIVNGVKRSFYVYANGGRGFCKAHNWNCLN 2425 KSYVH++DGC SSTCMMCYKRNRATRVECTTIVNGV+RSFYVYANGG+GFCK HNWNC+N Sbjct 2395 KSYVHVVDGCNSSTCMMCYKRNRATRVECTTIVNGVRRSFYVYANGGKGFCKLHNWNCVN 2454 Query 2426 CDTFCAGSTFISDEVARDLSLQFKRPINPTDQSAYVVDSVTVKNGALHLYFDKAGQKTYE 2485 CDTFCAGSTFISDEVARDLSLQFKRPINPTDQS+Y+VDSVTVKNG++HLYFDKAGQKTYE Sbjct 2455 CDTFCAGSTFISDEVARDLSLQFKRPINPTDQSSYIVDSVTVKNGSIHLYFDKAGQKTYE 2514 Query 2486 RHPLSHFVNLDNLRANNTKGSLPINVIVFDGKSKCEESAAKSASVYYSQLMCQPILLLDQ 2545 RH LSHFVNLDNLRANNTKGSLPINVIVFDGKSKCEES+AKSASVYYSQLMCQPILLLDQ Sbjct 2515 RHSLSHFVNLDNLRANNTKGSLPINVIVFDGKSKCEESSAKSASVYYSQLMCQPILLLDQ 2574 Query 2546 ALVSDVGDSTEVSVKMFDAYVDTFSATFSVPMEKLKALVATAHSELAKGVALDGVLSTFV 2605 ALVSDVGDS EV+VKMFDAYV+TFS+TF+VPMEKLK LVATA +ELAK V+LD VLSTF+ Sbjct 2575 ALVSDVGDSAEVAVKMFDAYVNTFSSTFNVPMEKLKTLVATAEAELAKNVSLDNVLSTFI 2634 Query 2606 SAARQGVVDTDVDTKDVIECLKLSHHSDIEVTGDSCNNFMLTYNKVENMTPRDLGACIDC 2665 SAARQG VD+DV+TKDV+ECLKLSH SDIEVTGDSCNN+MLTYNKVENMTPRDLGACIDC Sbjct 2635 SAARQGFVDSDVETKDVVECLKLSHQSDIEVTGDSCNNYMLTYNKVENMTPRDLGACIDC 2694 Query 2666 NARHINAQVAKSHNVSLVWNVKDYMSLSEQLRKQIRSAAKKNNIPFRLTCATTRQVVNVI 2725 +ARHINAQVAKSHN++L+WNVKD+MSLSEQLRKQIRSAAKKNN+PF+LTCATTRQVVNV+ Sbjct 2695 SARHINAQVAKSHNIALIWNVKDFMSLSEQLRKQIRSAAKKNNLPFKLTCATTRQVVNVV 2754 Query 2726 TTKISLKGGKVVSTWFKLLLKVTLLCVLAALFCYVIMPVHSLSVHDGYTNEIIGYKAIQD 2785 TTKI+LKGGK+V+ W K L+KVTL+ + A Y+I PVH +S H +++EIIGYKAI Sbjct 2755 TTKIALKGGKIVNNWLKQLIKVTLVFLFVAAIFYLITPVHVMSKHTDFSSEIIGYKAIDG 2814 Query 2786 GVTRDIVSTDDCFANKHAGFDSWFSQRGGSYRNDKNCPVVAAIITREIGFIVPGLPGTVL 2845 GVTRDI STD CFANKHA FD+WFSQRGGSY NDK CP++AA+ITRE+GF+VPGLPGT+L Sbjct 2815 GVTRDIASTDTCFANKHADFDTWFSQRGGSYTNDKACPLIAAVITREVGFVVPGLPGTIL 2874 Query 2846 RALNGDFLHFLPRVFSAVGNICYTPSKLIEYSDFATSACVLAAECTIFKDAMGKPVPYCY 2905 R NGDFLHFLPRVFSAVGNICYTPSKLIEY+DFATSACVLAAECTIFKDA GKPVPYCY Sbjct 2875 RTTNGDFLHFLPRVFSAVGNICYTPSKLIEYTDFATSACVLAAECTIFKDASGKPVPYCY 2934 Query 2906 DTNLLEGSISYSELRPDTRYVLMDGSIIQFPNTYLEGSVRVVTTFDAEYCRHGTCERSEV 2965 DTN+LEGS++Y LRPDTRYVLMDGSIIQFPNTYLEGSVRVVTTFD+EYCRHGTCERSE Sbjct 2935 DTNVLEGSVAYESLRPDTRYVLMDGSIIQFPNTYLEGSVRVVTTFDSEYCRHGTCERSEA 2994 Query 2966 GVCLSTSGRWVLNNEHYRALPGVFCGVDAMNLIANIFTPLVQPVGALDVSASVVAGGIIA 3025 GVC+STSGRWVLNN++YR+LPGVFCGVDA+NL+ N+FTPL+QP+GALD+SAS+VAGGI+A Sbjct 2995 GVCVSTSGRWVLNNDYYRSLPGVFCGVDAVNLLTNMFTPLIQPIGALDISASIVAGGIVA 3054 Query 3026 ILVTCAAYYFMKFRRAFGEYNHVVAANALLFLMSFTILCLAPAYSFLPGVYSIFYLYLTF 3085 I+VTC AYYFM+FRRAFGEY+HVVA N LLFLMSFT+LCL P YSFLPGVYS+ YLYLTF Sbjct 3055 IVVTCLAYYFMRFRRAFGEYSHVVAFNTLLFLMSFTVLCLTPVYSFLPGVYSVIYLYLTF 3114 Query 3086 YFTNDVSFLAHLQWFAMFSPIVPFWITAIYVFCISLKHFHWFFSNYLKKRVMFNGVTFST 3145 Y TNDVSFLAH+QW MF+P+VPFWIT Y+ CIS KHF+WFFSNYLK+RV+FNGV+FST Sbjct 3115 YLTNDVSFLAHIQWMVMFTPLVPFWITIAYIICISTKHFYWFFSNYLKRRVVFNGVSFST 3174 Query 3146 FEEAALCTFLLNKEMYLRLRSETLLPLTQYNRYLALYNKYKYFSGALDTTSYREAACCHL 3205 FEEAALCTFLLNKEMYL+LRS+ LLPLTQYNRYLALYNKYKYFSGA+DTTSYREAACCHL Sbjct 3175 FEEAALCTFLLNKEMYLKLRSDVLLPLTQYNRYLALYNKYKYFSGAMDTTSYREAACCHL 3234 Query 3206 AKALNDFSNSGADVLYQPPQTSITSAVLQSGFRKMAFPSGKVEGCMVQVTCGTTTLNGLW 3265 AKALNDFSNSG+DVLYQPPQTSITSAVLQSGFRKMAFPSGKVEGCMVQVTCGTTTLNGLW Sbjct 3235 AKALNDFSNSGSDVLYQPPQTSITSAVLQSGFRKMAFPSGKVEGCMVQVTCGTTTLNGLW 3294 Query 3266 LDDTVYCPRHVVCTAEDMLNPNYDDLLIRKSNHSFLVQAGNVQLRVIGHSMQNCLLRLKV 3325 LDD VYCPRHV+CT+EDMLNPNY+DLLIRKSNH+FLVQAGNVQLRVIGHSMQNC+L+LKV Sbjct 3295 LDDVVYCPRHVICTSEDMLNPNYEDLLIRKSNHNFLVQAGNVQLRVIGHSMQNCVLKLKV 3354 Query 3326 DTSNPKTPKYKFVRIQPGQTFSVLACYNGSPSGVYQCAMRPNHTIKGSFLNGSCGSVGFN 3385 DT+NPKTPKYKFVRIQPGQTFSVLACYNGSPSGVYQCAMRPN TIKGSFLNGSCGSVGFN Sbjct 3355 DTANPKTPKYKFVRIQPGQTFSVLACYNGSPSGVYQCAMRPNFTIKGSFLNGSCGSVGFN 3414 Query 3386 IDYDCVSFCYMHHMELPTGVHAGTDLEGKFYGPFVDRQTAQAAGTDTTITLNVLAWLYAA 3445 IDYDCVSFCYMHHMELPTGVHAGTDLEG FYGPFVDRQTAQAAGTDTTIT+NVLAWLYAA Sbjct 3415 IDYDCVSFCYMHHMELPTGVHAGTDLEGNFYGPFVDRQTAQAAGTDTTITVNVLAWLYAA 3474 Query 3446 VINGDRWFLNRFTTTLNDFNLVAMKYNYEPLTQDHVDILGPLSAQTGIAVLDMCAALKEL 3505 VINGDRWFLNRFTTTLNDFNLVAMKYNYEPLTQDHVDILGPLSAQTGIAVLDMCA+LKEL Sbjct 3475 VINGDRWFLNRFTTTLNDFNLVAMKYNYEPLTQDHVDILGPLSAQTGIAVLDMCASLKEL 3534 Query 3506 LQNGMNGRTILGSTILEDEFTPFDVVRQCSGVTFQGKFKKIVKGTHHWMLLTFLTSLLIL 3565 LQNGMNGRTILGS +LEDEFTPFDVVRQCSGVTFQ K+ +KGTHHW+LLT LTSLL+L Sbjct 3535 LQNGMNGRTILGSALLEDEFTPFDVVRQCSGVTFQSAVKRTIKGTHHWLLLTILTSLLVL 3594 Query 3566 VQSTQWSLFFFVYENAFLPFALGIMAVAACAMLLVKHKHAFLCLFLLPSLATVAYFNMVY 3625 VQSTQWSLFFF+YENAFLPFA+GI+A++A AM+ VKHKHAFLCLFLLPSLATVAYFNMVY Sbjct 3595 VQSTQWSLFFFLYENAFLPFAMGIIAMSAFAMMFVKHKHAFLCLFLLPSLATVAYFNMVY 3654 Query 3626 MPASWVMRIMTWLELADTSLSGYRLKDCVMYASALVLLILMTARTVYDDAARRVWTLMNV 3685 MPASWVMRIMTWL++ DTSLSG++LKDCVMYASA+VLLILMTARTVYDD ARRVWTLMNV Sbjct 3655 MPASWVMRIMTWLDMVDTSLSGFKLKDCVMYASAVVLLILMTARTVYDDGARRVWTLMNV 3714 Query 3686 ITLVYKVYYGNSLDQAISMWALVISVTSNYSGVVTTIMFLARAIVFVCVEYYPLLFITGN 3745 +TLVYKVYYGN+LDQAISMWAL+ISVTSNYSGVVTT+MFLAR IVF+CVEY P+ FITGN Sbjct 3715 LTLVYKVYYGNALDQAISMWALIISVTSNYSGVVTTVMFLARGIVFMCVEYCPIFFITGN 3774 Query 3746 TLQCIMLVYCFLGYCCCCYFGLFCLLNRYFRLTLGVYDYLVSTQEFRYMNSQGLLPPKSS 3805 TLQCIMLVYCFLGY C CYFGLFCLLNRYFRLTLGVYDYLVSTQEFRYMNSQGLLPPK+S Sbjct 3775 TLQCIMLVYCFLGYFCTCYFGLFCLLNRYFRLTLGVYDYLVSTQEFRYMNSQGLLPPKNS 3834 Query 3806 IDAFKLNIKLLGIGGKPCIKVATVQSKMSDVKCTSVVLLSVLQQLRVESSSKLWAQCVQL 3865 IDAFKLNIKLLG+GGKPCIKVATVQSKMSDVKCTSVVLLSVLQQLRVESSSKLWAQCVQL Sbjct 3835 IDAFKLNIKLLGVGGKPCIKVATVQSKMSDVKCTSVVLLSVLQQLRVESSSKLWAQCVQL 3894 Query 3866 HNDILLAKDTTEAFEKMVSLLSVLLSMQGAVDINKLCEEMLDNRATLQAIASEFSSLPSY 3925 HNDILLAKDTTEAFEKMVSLLSVLLSMQGAVDINKLCEEMLDNRATLQAIASEFSSLPSY Sbjct 3895 HNDILLAKDTTEAFEKMVSLLSVLLSMQGAVDINKLCEEMLDNRATLQAIASEFSSLPSY 3954 Query 3926 AAYATAQEAYEQAVSNGDSEVVLKKLKKSLNVAKSEFDHDAAMQRKLEKMADQAMTQMYK 3985 AA+ATAQEAYEQAV+NGDSEVVLKKLKKSLNVAKSEFD DAAMQRKLEKMADQAMTQMYK Sbjct 3955 AAFATAQEAYEQAVANGDSEVVLKKLKKSLNVAKSEFDRDAAMQRKLEKMADQAMTQMYK 4014 Query 3986 QARSEDKRAKVTSAMQTMLFTMLRKLDNDALNNIINNARDGCVPLNIIPLTTAAKLMVVV 4045 QARSEDKRAKVTSAMQTMLFTMLRKLDNDALNNIINNARDGCVPLNIIPLTTAAKLMVV+ Sbjct 4015 QARSEDKRAKVTSAMQTMLFTMLRKLDNDALNNIINNARDGCVPLNIIPLTTAAKLMVVI 4074 Query 4046 PDYGTYKNTCDGNTFTYASALWEIQQVVDADSKIVQLSEINMDNSPNLAWPLIVTALRAN 4105 PDY TYKNTCDG TFTYASALWEIQQVVDADSKIVQLSEI+MDNSPNLAWPLIVTALRAN Sbjct 4075 PDYNTYKNTCDGTTFTYASALWEIQQVVDADSKIVQLSEISMDNSPNLAWPLIVTALRAN 4134 Query 4106 SAVKLQNNELSPVALRQMSCAAGTTQTACTDDNALAYYNNAKGGRFVLALLSDHQDLKWA 4165 SAVKLQNNELSPVALRQMSCAAGTTQTACTDDNALAYYN KGGRFVLALLSD QDLKWA Sbjct 4135 SAVKLQNNELSPVALRQMSCAAGTTQTACTDDNALAYYNTTKGGRFVLALLSDLQDLKWA 4194 Query 4166 RFPKSDGTGTIYTELEPPCRFVTDTPKGPKVKYLYFIKGLNNLNRGMVLGSLAATVRLQA 4225 RFPKSDGTGTIYTELEPPCRFVTDTPKGPKVKYLYFIKGLNNLNRGMVLGSLAATVRLQA Sbjct 4195 RFPKSDGTGTIYTELEPPCRFVTDTPKGPKVKYLYFIKGLNNLNRGMVLGSLAATVRLQA 4254 Query 4226 GNATEVPANSTVLSFCAFAVDPAKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPEA 4285 GNATEVPANSTVLSFCAFAVD AKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPEA Sbjct 4255 GNATEVPANSTVLSFCAFAVDAAKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPEA 4314 Query 4286 NMDQESFGGASCCLYCRCHIDHPNPKGFCDLKGKYVQIPTTCANDPVGFTLRNTVCTVCG 4345 NMDQESFGGASCCLYCRCHIDHPNPKGFCDLKGKYVQIPTTCANDPVGFTL+NTVCTVCG Sbjct 4315 NMDQESFGGASCCLYCRCHIDHPNPKGFCDLKGKYVQIPTTCANDPVGFTLKNTVCTVCG 4374 Query 4346 MWKGYGCSCDQLREPMMQSADASTFLN 4372 MWKGYGCSCDQLREPM+QSADA +FLN Sbjct 4375 MWKGYGCSCDQLREPMLQSADAQSFLN 4401 >RecName: Full=Replicase polyprotein 1a; Short=pp1a; AltName: Full=ORF1a polyprotein; Contains: RecName: Full=Non-structural protein 1; Short=nsp1; AltName: Full=Leader protein; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p65 homolog; Contains: RecName: Full=Papain-like protease nsp3; Short=PL-PRO; AltName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=PL2-PRO; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; Contains: RecName: Full=3C-like proteinase nsp5; Short=3CL-PRO; Short=3CLp; AltName: Full=nsp5; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; Contains: RecName: Full=RNA-capping enzyme subunit nsp9; AltName: Full=Non-structural protein 9; Short=nsp9; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; Contains: RecName: Full=Non-structural protein 11; Short=nsp11 [Rousettus bat coronavirus HKU9] Sequence ID: P0C6T6.1 Length: 4248 Range 1: 1170 to 4241 Score:2297 bits(5953), Expect:0.0, Method:Compositional matrix adjust., Identities:1257/3139(40%), Positives:1844/3139(58%), Gaps:135/3139(4%) Query 1302 QGCAGYTLEEAKTALKKCKSAFYVLPSETPNEKEE-----------VLGTVSWNLREMLA 1350 + C + + +K+ K ++P +T ++ + ++ VS + M+ Sbjct 1170 ESCVRDLVRQVVKKVKRDKRPPPIVPQQTVEQQPQEISSPGDCNTVLVDVVSMSFSAMVN 1229 Query 1351 HAEETRKLMPICLDVRAIMATIQRKYKGIKVQEGIVDY-GVRFFFYTSKEPVASIITKLN 1409 +E L+P+ +D A + ++R +EG+ G F+ Y+ +P+ + LN Sbjct 1230 FGKEKGLLIPVVIDYPAFLKVLKR----FSPKEGLFSSNGYEFYGYSRDKPLHEVSKDLN 1285 Query 1410 SLNEPLVTMPIGYVTHGLNLEEAARCMRSLKAPAVVSVSSPDAVTAYNGYLT---SSSKT 1466 SL PL+ +P G++ +G L +A MR L P V V S +V Y Y S T Sbjct 1286 SLGRPLIMIPFGFIVNGQTLAVSAVSMRGLTVPHTVVVPSESSVPLYRAYFNGVFSGDTT 1345 Query 1467 PEEYFVETTSLAGSYRDWSYSGQRTELGVE------FLKRG-------DKIVYHTTGSPI 1513 + FV L G+ RDW +T V+ KRG D +Y TG + Sbjct 1346 AVQDFVVDILLNGA-RDWDV--LQTTCTVDRKVYKTICKRGNTYLCFDDTNLYAITGDVV 1402 Query 1514 EFHLDGEVLPLDKLKSLLSLREVKT---IKVFTTVDNTNLHTHIVDMSMTYGQQFGPTYL 1570 + + K ++ L + IKV TTVD N T +V + +Y Q G + Sbjct 1403 L-----KFATVSKARAYLETKLCAPEPLIKVLTTVDGINYSTVLVSTAQSYRAQIGTVFC 1457 Query 1571 DGADVTKIKPHVNHEGKTFFVLPSDDTLRSEAF-EYYHTIDESFLGRYMSALNHTKKWKF 1629 DG D + P EG + + + A EYY D + + R MS + W + Sbjct 1458 DGHDWSNKNPMPTDEGTHLYKQDNFSSAEVTAIREYYGVDDSNIIARAMSIRKTVQTWPY 1517 Query 1630 PQVGGLTSIKWADNNCYLSSVLLALQQVEVKFNAPALQEAYYRARAGDAANFCALILAYS 1689 V G + D+NCYL+ + LQ ++V F+ P + AY + G+ +++A Sbjct 1518 TVVDGRVLLAQRDSNCYLNVAISLLQDIDVSFSTPWVCRAYDALKGGNPLPMAEVLIALG 1577 Query 1690 NKTVGELGDVRETMTHLLQHANLESAKRVLNVVCKHCGQKTTTLKGVEAVMYMGTLSYDE 1749 T G D ++ +L H + +A+RV+ VC+HCG G +A + G++ D+ Sbjct 1578 KATPGVSDDAHMVLSAVLNHGTV-TARRVMQTVCEHCGVSQMVFTGTDACTFYGSVVLDD 1636 Query 1750 LKTGVSIPCVCGRNATQYLVQQESSFVMMSAPPAEYKLQ-QGAFLCANEYTGNYQCGHYT 1808 L VS+ C CGR A +Y+ +Q+S +++MS P + L G + A + G GHY Sbjct 1637 LYAPVSVVCQCGRPAIRYVSEQKSPWLLMSCTPTQVPLDTSGIWKTAIVFRGPVTAGHYM 1696 Query 1809 HITAKETLYRVDGAHLTKMSEYKGPVTDVFYKETSYTTAIKPVSYKLDGVTYTEIEPKLD 1868 + + D + S+ K P TD+ Y TS+T+ K +Y LDGV T I+P Sbjct 1697 YAVNGTLISVYDANTRRRTSDLKLPATDILYGPTSFTSDSKVETYYLDGVKRTTIDPDFS 1756 Query 1869 GYYKKGNAYYTEQPIDLVPTQPMPNASFDNFKLT-CSNTKFADDLNQMTGFKKPASRELT 1927 Y K+G+ Y+T PI++V P S+D F L+ C N + A+ N+ K +L Sbjct 1757 KYVKRGDYYFTTAPIEVV-AAPKLVTSYDGFYLSSCQNPQLAESFNKAINATKTGPMKL- 1814 Query 1928 VTFFPDLNGDVVAIDYRHYSTSFKKGAKLVHKPILWHINQTTNKTTYKPNIWC-LRCLWS 1986 +T +P++ GDVVAI + + G+ + KP+L+ +PN W L L S Sbjct 1815 LTMYPNVAGDVVAISDDNV-VAHPYGSLHMGKPVLF---------VTRPNTWKKLVPLLS 1864 Query 1987 TKPVDTSNSFEVLVVEDTQGMDNLACESQTTTSEEVVENPTVQKEIIECDVKTTEVVGNV 2046 T V+T N+++VL V D L ++T SEE + +V+ I +K T V+ Sbjct 1865 TVVVNTPNTYDVLAV------DPLPVNNET--SEEPI---SVKAPIPLYGLKATMVLNGT 1913 Query 2047 ILKPSEEG-VKVTQELGHEDLMAAYVEETS-ITIKKPNELSLALGLKTLATHGAAAINSV 2104 P +G + +E DL YVE + K + LS LGL+ + + +N + Sbjct 1914 TYVPGNKGHLLCLKEFTLTDLQTFYVEGVQPFVLLKASHLSKVLGLRV--SDSSLHVNHL 1971 Query 2105 PWSKILAYVKPFLGQTAVITSNCIKKCVQRVFSNYMPYV------------ITLLFQL-C 2151 + AY L T +T++ + V R +V + L +QL Sbjct 1972 SKGVVYAYAATRL--TTRVTTSLLGGLVTRSVRKTADFVRSTNPGSKCVGLLCLFYQLFM 2029 Query 2152 TFTKSTNSRIKASLPTTIAKNSVKSVAKLCLDVCINYVKSPKFSKLFTIVMWLLLLSICL 2211 F + IA N+ V L+ + + +S+L ++ ++L + Sbjct 2030 RFWLLVKKPPIVKVSGIIAYNTGCGVTTCVLNYLRSRCGNISWSRLLKLLRYMLYIWFVW 2089 Query 2212 GSLTYVTAVLGVCLSSLGVPSYCDGVR---ELYINSSNVTTMDFCQGYFPCSVCLSGLDS 2268 LT + GV LS PS + + + V + G+ +C++G+DS Sbjct 2090 TCLT----ICGVWLSEPYAPSLVTRFKYFLGIVMPCDYVLVNETGTGWLH-HLCMAGMDS 2144 Query 2269 LDSYPALETIQVTISSYKLDLTFLGLAAEWLLAYMLFTKFFYLLGLSAIMQAFFGYFASH 2328 LD YPAL Q S + T++ + E AY+L+T ++G+ A++ Y Sbjct 2145 LD-YPALRMQQHRYGS-PYNYTYILMLLEAFFAYLLYTPALPIVGILAVLHLIVLYLPIP 2202 Query 2329 FISNSWLMWFIISIVQMAPVSAMVRMYIFFASFYYVWKSYVHIMDGCTSSTCMMCYKRNR 2388 + NSWL+ F+ I+++ P ++M+RMYI A + +K ++H+ GC + C+MCYK+N Sbjct 2203 -LGNSWLVVFLYYIIRLVPFTSMLRMYIVIAFLWLCYKGFLHVRYGCNNVACLMCYKKNV 2261 Query 2389 ATRVECTTIVNGVKRSFYVYANGGRGFCKAHNWNCLNCDTFCAGSTFISDEVARDLSLQF 2448 A R+EC+T+VNGVKR FYV ANGG FC HNWNC++CDT+ STFI +VA DLS QF Sbjct 2262 AKRIECSTVVNGVKRMFYVNANGGTHFCTKHNWNCVSCDTYTVDSTFICRQVALDLSAQF 2321 Query 2449 KRPINPTDQSAYVVDSVTVKNGALHLYFDKAGQKTYERHPLSHFVNLDNLRANNTKGSLP 2508 KRPI TD++ Y V SV V+NG ++ YF+ GQ++YER P+ F N+ L + KG+ P Sbjct 2322 KRPIIHTDEAYYEVTSVEVRNGYVYCYFESDGQRSYERFPMDAFTNVSKLHYSELKGAAP 2381 Query 2509 -INVIVFDGKSKCEESAAKSASVYYSQLMCQPILLLDQALVSDVGDSTEVSVKMFDAYVD 2567 NV+VFD ++ EE+A K+A++YY+QL C+PILL+D+ +V VGD ++ MF+AY Sbjct 2382 AFNVLVFDATNRIEENAVKTAAIYYAQLACKPILLVDKRMVGVVGDDATIARAMFEAYAQ 2441 Query 2568 TFSATFSVPMEKLKALVATAHSELAKGVALDGVLSTFVSAARQGVVD--TDVDTKDVIEC 2625 + +S+ M+K+K L +TA +++ G+ ++ VL FV + R D +DVDT D++ C Sbjct 2442 NYLLKYSIAMDKVKHLYSTALQQISSGMTVESVLKVFVGSTRAEAKDLESDVDTNDLVSC 2501 Query 2626 LKLSHHSDIEVTGDSCNNFMLTYNKVENMTPRDLGACIDCNARHINAQVAKSHNVSLVWN 2685 ++L H E T DS NN + TY K + ++ ++G + NA+++NA +AK V+L+W Sbjct 2502 IRLCHQEGWEWTTDSWNNLVPTYIKQDTLSTLEVGQFMTANAKYVNANIAKGAAVNLIWR 2561 Query 2686 VKDYMSLSEQLRKQIRSAAKKNNIPFRLTCATTRQVVNVITTKISLKGG-KVVSTWFKLL 2744 D++ LSE +R+Q++ AA+K + +T ++ + V + T + GG + + +W ++L Sbjct 2562 YADFIKLSESMRRQLKVAARKTGLNLLVTTSSLKADVPCMVTPFKIIGGHRRIVSWRRVL 2621 Query 2745 LKVTLLCVL--AALFC--YVIMPVHSLSVHDGYTNEIIGYKAIQDGVTRDIVSTDDCFAN 2800 + V +L V+ F Y++ P+ ++ +K I + V RDI S D CFAN Sbjct 2622 IHVFMLLVVLNPQWFTPWYIMRPIEY---------NVVDFKVIDNAVIRDITSADQCFAN 2672 Query 2801 KHAGFDSWFSQRGGSYRNDKNCPVVAAIITREIGFIVPGLPGTVLRALNGDFLHFLPRVF 2860 K + F++W+S R GSY N + CP+V +++ +G +VPGLP LR + L + Sbjct 2673 KFSAFENWYSNRYGSYVNSRGCPMVVGVVSDIVGSLVPGLPARFLR-VGTTLLPLVNYGL 2731 Query 2861 SAVGNICYTPSKLIEYSDFATSACVLAAECTIFKDAMGKPVPYCYDTNLLEGSISYSELR 2920 AVG++CYTP I Y F TSACVLAA CT+F A G+ +PYC D L++ + Y L+ Sbjct 2732 GAVGSVCYTPHYAINYDVFDTSACVLAATCTLFSSASGERMPYCADAALIQNASRYDMLK 2791 Query 2921 PDTRYVLMDGS-IIQFPNTYLEGSVRVVTTFDAEYCRHGTCERSEVGVCLSTSGRWVLNN 2979 P Y + S I+FP + V +V T EYC+ G C+ SE G+C+S RWV+NN Sbjct 2792 PHVMYPFYEHSGYIRFPEV-ISAGVHIVRTMAMEYCKVGRCDVSEAGLCMSLQPRWVVNN 2850 Query 2980 EHYRALPGVFCGVDAMNLIANIFTPLVQPVGALDVSASVVAGGIIAILVTCAAYYFMKFR 3039 ++R GV+CG A +L N+ P+ PVGA+D++ S++ G ++A++V+ + YY ++FR Sbjct 2851 AYFRQQSGVYCGTSAFDLFMNMLLPIFTPVGAVDITTSILMGALLAVVVSMSLYYLLRFR 2910 Query 3040 RAFGEYNHVVAANALLFLMSFTILCLAPAYSFLPGVYSIFYLYLTFYFTNDVSFLAHLQW 3099 RAFG+Y+ V+ N L F+++ +LCL Y LP +Y++ +LY T YF +D++ + H+ + Sbjct 2911 RAFGDYSGVIFTNILAFVLNVIVLCLEGPYPMLPSIYAMVFLYATCYFGSDIACMMHVSF 2970 Query 3100 FAMFSPIVPFWITAIYVFCISLKHFHWFFSNYLKKRVMFNGVTFSTFEEAALCTFLLNKE 3159 MF+ +VP W+T +Y+ + +H WF S K+ V + F +F++AAL TF+L+KE Sbjct 2971 LIMFAGVVPLWVTVLYIVVVLSRHILWFASLCTKRTVQVGDLAFHSFQDAALQTFMLDKE 3030 Query 3160 MYLRLRSETLLPLTQYNRYLALYNKYKYFSGALDTTSYREAACCHLAKALNDFSNSGADV 3219 ++LRL+ E + Y +YLA+YNKYKY+SG +DT +YREAAC HL AL +SN G D Sbjct 3031 VFLRLKRE--ISSDAYFKYLAMYNKYKYYSGPMDTAAYREAACSHLVMALEKYSNGGGDT 3088 Query 3220 LYQPPQTSITSAVLQSGFRKMAFPSGKVEGCMVQVTCGTTTLNGLWLDDTVYCPRHVVCT 3279 +YQPP+ S+ SA LQ+G +MA PSG VE C+V+V G+ TLNG+WLD+ V CPRHV+C+ Sbjct 3089 IYQPPRCSVASAALQAGLTRMAHPSGLVEPCLVKVNYGSMTLNGIWLDNFVICPRHVMCS 3148 Query 3280 AEDMLNPNYDDLLIRKSNHSFLVQAGNVQLRVIGHSMQNCLLRLKVDTSNPKTPKYKFVR 3339 +++ NP+Y L +R +N+ F V +RVIGH+M+ LL+L VD +NPKTP Y F+R Sbjct 3149 RDELANPDYPRLSMRAANYDFHVSQNGHNIRVIGHTMEGSLLKLTVDVNNPKTPAYSFIR 3208 Query 3340 IQPGQTFSVLACYNGSPSGVYQCAMRPNHTIKGSFLNGSCGSVGFNIDYDCVSFCYMHHM 3399 + GQ S+LACY+G P+GVY C +R N T++ SFL GSCGS GF ++ V FCY+H + Sbjct 3209 VSTGQAMSLLACYDGLPTGVYTCTLRSNGTMRASFLCGSCGSPGFVMNGKEVQFCYLHQL 3268 Query 3400 ELPTGVHAGTDLEGKFYGPFVDRQTAQAAGTDTTITLNVLAWLYAAVINGDRWFLNRFTT 3459 ELP G H GTD G FYGPF D+Q Q A D TIT+NVLAWLYAAV++G+ WFL + + Sbjct 3269 ELPNGTHTGTDFSGVFYGPFEDKQVPQLAAPDCTITVNVLAWLYAAVLSGENWFLTKSSI 3328 Query 3460 TLNDFNLVAMKYNYEPLTQDHVDILGPLSAQTGIAVLDMCAALKELLQNGMNGRTILGST 3519 + +FN A+KY + +T + + +L PL+A+TGI+V M +ALK LL G GRTI+GS Sbjct 3329 SPAEFNNCAVKYMCQSVTSESLQVLQPLAAKTGISVERMLSALKVLLSAGFCGRTIMGSC 3388 Query 3520 ILEDEFTPFDVVRQCSGVTFQGKFKKIVKGTHHWMLLTFLTSLLILVQSTQWSLFFFVYE 3579 LEDE TP+D+ RQ GV QGKF+ + + T W + F+ ++LIL+Q QW+ + Sbjct 3389 SLEDEHTPYDIGRQMLGVKLQGKFQSMFRWTLQWFAIIFVLTILILLQLAQWTFVGALPF 3448 Query 3580 NAFLPFALGIMAV-AACAMLLVKHKHAFLCLFLLPSLATVAYFNMVYMP---ASWVMRIM 3635 LP +G +AV LL+KHKH +L ++LLP AY+N Y P +++ + Sbjct 3449 TLLLPL-IGFVAVCVGFVSLLIKHKHTYLTVYLLPVAMVTAYYNFQYTPEGVQGYLLSLY 3507 Query 3636 TWLELADTSLSGYRLKDCVMYASALVLLILMTARTVYDDAARRVWTLMNVITLVYKVYYG 3695 ++ + G L ++ + A LL + R V DA R+W + + +Y + G Sbjct 3508 NYVNPGRIDVIGTDLLTMLIISVACTLL---SVRMVRTDAYSRIWYVCTAVGWLYNCWTG 3564 Query 3696 NSLDQAISMWALVISVTSNYSGVVTTIMFLARAIVFVCVEYYPLLFITGNTLQCIMLVYC 3755 ++ AIS ++SV +NY+GV ++ A+ +V+V P + + +C+++ Y Sbjct 3565 SADTVAISYLTFMVSVFTNYTGVACASLYAAQFMVWVLKFLDPTILLLYGRFRCVLVCYL 3624 Query 3756 FLGYCCCCYFGLFCLLNRYFRLTLGVYDYLVSTQEFRYMNSQGLLPPKSSIDAFKLNIKL 3815 +GY C CYFG+F L+NR FR TLG Y+Y+VS+QE RYMNS GLLPP +S A LNIKL Sbjct 3625 LVGYLCTCYFGVFNLINRLFRCTLGNYEYVVSSQELRYMNSHGLLPPTNSWQALMLNIKL 3684 Query 3816 LGIGGKPCIKVATVQSKMSDVKCTSVVLLSVLQQLRVESSSKLWAQCVQLHNDILLAKDT 3875 GIGG P +V+T+QS M+D+KCTSVVLLSVLQQLRVESSSKLWA CV+LHN+IL + Sbjct 3685 AGIGGIPIYRVSTIQSNMTDLKCTSVVLLSVLQQLRVESSSKLWALCVKLHNEILASNSP 3744 Query 3876 TEAFEKMVSLLSVLLSMQGAVDINKLCEEMLDNRATLQAIASEFSSLPSYAAYATAQEAY 3935 TEAFE VSLLSVLLS+ GA+++++LC +L+N + LQA+ASEFS+L SY Y AQ+AY Sbjct 3745 TEAFEAFVSLLSVLLSLPGAINLDELCSSILENNSVLQAVASEFSNLSSYVDYENAQKAY 3804 Query 3936 EQAVSNGDSEVVLKKLKKSLNVAKSEFDHDAAMQRKLEKMADQAMTQMYKQARSEDKRAK 3995 + AV+ G + LKK++NVAKS D D A RKLE+M++ AMT MYKQAR+ED+R+K Sbjct 3805 DTAVATGAPASTVNALKKAMNVAKSVLDKDVATTRKLERMSELAMTAMYKQARAEDRRSK 3864 Query 3996 VTSAMQTMLFTMLRKLDNDALNNIINNARDGCVPLNIIPLTTAAKLMVVVPDYGTYKNTC 4055 VT+AMQTMLF M+R+LD+DAL+NI+NNAR+G VPL +IP T A KL++VVPD+ Y T Sbjct 3865 VTAAMQTMLFNMIRRLDSDALSNILNNARNGVVPLGVIPRTAANKLLLVVPDFSVYTATI 3924 Query 4056 DGNTFTYASALWEIQQVVDADSKIVQLSEINMDNSPNLAWPLIVTALR--ANSAVKLQNN 4113 T TYA + W++ QV DAD K V ++I +NS NLAWPL+VTA R A S VKLQNN Sbjct 3925 TMPTLTYAGSAWDVMQVADADGKTVNATDITRENSVNLAWPLVVTAQRQQATSPVKLQNN 3984 Query 4114 ELSPVALRQMSCAAGTTQTACTDDNALAYYNNAKGGRFVLALLSDHQDLKWARFPKSDGT 4173 EL P +++M+ AG +QTAC D A+AYYN K GR V+A+L+D L +A+ KS G Sbjct 3985 ELMPQTVKRMNVVAGVSQTACVTD-AVAYYNATKEGRHVMAILADTDGLAFAKVEKSTGD 4043 Query 4174 GTIYTELEPPCRFVTDTPKGPKVKYLYFIKGLNNLNRGMVLGSLAATVRLQAGNATEVPA 4233 G + ELEPPC+F+ DTPKGP +KYLYF KGL NL RG VLG+LA TVRL AG+ATEV + Sbjct 4044 GFVILELEPPCKFMVDTPKGPALKYLYFTKGLKNLCRGTVLGTLACTVRLHAGSATEVAS 4103 Query 4234 NSTVLSFCAFAVDPAKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPEANMDQESFG 4293 NS++LS C+F+VDP YKDYL +GG PI NCVKML HTGTG AIT P+AN+DQESFG Sbjct 4104 NSSILSLCSFSVDPEATYKDYLDNGGSPIGNCVKMLTPHTGTGLAITAKPDANIDQESFG 4163 Query 4294 GASCCLYCRCHIDHPNPKGFCDLKGKYVQIPTTCANDPVGFTLRNTVCTVCGMWKGYGCS 4353 GASCCLYCRCHI+HP G C KGK+VQIP NDP+GF +RN VC VC MW+GYGC Sbjct 4164 GASCCLYCRCHIEHPGASGVCKYKGKFVQIPLVGVNDPIGFCIRNVVCAVCNMWQGYGCP 4223 Query 4354 CDQLREPMMQSADASTFLN 4372 C LRE +Q+ D FLN Sbjct 4224 CSSLREINLQARD-ECFLN 4241 Range 2: 29 to 1126 Score:273 bits(697), Expect:2e-71, Method:Compositional matrix adjust., Identities:326/1208(27%), Positives:510/1208(42%), Gaps:148/1208(12%) Query 28 VRGFGDSVEEALSEAREHLKNGTCGLVELEKGV--LPQLEQPYVFIKRSDALSTNHG-HK 84 V G+ +EEAL A++ L+ LV + + P + V I S +TN G Sbjct 29 VTGWDIPIEEALEYAKQQLRTPEPQLVFVPYYLSHAPGISGDRVVITDSIWYATNFGWQP 88 Query 85 VVELVAELDGIQFGRSGITLGVLVPHVGETPIAYR-NVLLRKNGNKGAGGHSFGIDLKSY 143 + EL + DG+++GR G T GVL+P + I ++ +RK G G +S L + Sbjct 89 IRELAMDKDGVRYGRGG-THGVLLPMQDPSFIMGDIDIQIRK---YGIGANSPPDVLPLW 144 Query 144 DLGDELGTD--PIEDYEQNW---NTKHGSGALRELTRELNGGVVTRYVDNNFCGPDGYPL 198 D + G D P D+ N K G L+ + DNN G + Sbjct 145 DGFSDPGPDVGPYLDFPDNCCPTKPKAKRGGDVYLSDQYG-------FDNN-----GILV 192 Query 199 ECIKDFLARAGKSMCTLSEQLDYIESKR--GVYCCREHEHEIVWFTERSEKSYEHQTPFE 256 E + L KS TL + L + R Y + ++ R Q+ F Sbjct 193 EPVMKLLGVI-KSDFTLEQLLAALGKYRTEDGYDLPDGYVKVAIKVGRKAVPVLKQSIFT 251 Query 257 IKSAKKFDTFKGECPKFVFPLNSKVKVIQPRVEK-----KKTEGFMGRIRSV--YPVATP 309 + + P + +P ++ V + + K E M + Y ATP Sbjct 252 VVGVTE-----QLVPGYYYPFSTSSVVEHTKPTRGGPVGKTVEAVMLSLYGTNNYNPATP 306 Query 310 QECNDMHLSTLMKCNHCDEVSWQTCDFLKATCEQCGTENLVCEGPTTCGYLPTNAVVKMP 369 +KC++CD W + CG E + ++C + V+K Sbjct 307 --------VARLKCSYCDYYGWTPLKDIGTVNCLCGAE---FQLTSSCVDAESAGVIKPG 355 Query 370 CPACQDPEVGPEHSVADYHNHSNIETRLRKGGRTKC-FGGCVFSYVGCYNKRAYWVPRAS 428 C D G RL G RT FGG ++S +G N WVPRA Sbjct 356 CVMLLDKSPG---------------MRLIPGNRTYVSFGGAIWSPIGKVNGVTVWVPRAY 400 Query 429 ANIGANHTGITGE-NVETLNEDLLEILNRERVNINIVGDFRFNEEVAIILASFSASPSA- 486 + + H+G G + +N++L+E L I + D N A +A+ A Sbjct 401 SIVAGEHSGAVGSGDTVAINKELVEYLIE---GIRVDADTLDNPTCATFIANLDCDTKAP 457 Query 487 ---FIETVKGLDYKSFKVIVESCGNYKVTNG-KPVTGAWNIGQQRSILTPLCGFPSQAAG 542 +E+++GL C K+ G KP+ + + L + Q A Sbjct 458 VVHTVESLQGL-----------CLANKIMLGDKPLP----TDEFHPFIVGL-AYHVQRAC 501 Query 543 VIRSIFSRTLDAANHSILDLQRAAVTTLDGISEQSLRLVDAMVYTSDLLTNSVVVMAY-V 601 ++ SRT +A D R + ++ VY + + AY V Sbjct 502 WYGALASRTFEA----FRDFVRTEEERFAQFFGKVCAPINGCVYLAYTTGRVTLFSAYQV 557 Query 602 TGGLVQQTMQWLSNMLGTAVDKLKPVFTWVEAKLSAGVEFLRDAW----EILKFLITGVF 657 + ++ + VD LKP+ WV K+S + AW E L L F Sbjct 558 LNTAIAKSKDAFGGVAAIVVDMLKPILEWVLKKMSIA----KGAWLPYAEGLLALFKAQF 613 Query 658 DVIKGQIQVATDNIKECVKIFLGVVNKALEMCLDQVTIAGTKLRALNLGEVFIAQSRGLY 717 V+KG+ Q ++ ++ + L V AG K+ AL G + +G+ Sbjct 614 TVVKGKFQFLRASLNSKCHSLCDLLTTIMSKLLTSVKWAGCKVDALYTGTYYYFSRKGVL 673 Query 718 RQCIRGKEQLQLLM-PLKAPKEVTFLEGDAHDTV-LTSEEVVLKSGELEALETPIDSFTS 775 + ++L LL+ P + EV L+GD V LT E+ +G LE + D Sbjct 674 TEVQLCAKRLGLLLTPKQQKMEVEVLDGDFDAPVTLTDLELEECTGVLEEVFGASDV--- 730 Query 776 GAVVGTPVCINGLMLLELENKEQYCALSPGLLATNNVFRLKGGAPVKGVTFGEDTVLEVQ 835 V GT V + + + E+ Y + G + FRL+GG V VTFG++ V + Sbjct 731 KLVKGTLVSLASKLFVRTEDGFLYRYVKSGGV-LGKAFRLRGGG-VSKVTFGDEEVHTIP 788 Query 836 GYKNVKITFELDVRVDKVLNEKCSVYTVESGTEVTEFACVVAEAVVKTLQPVSDLLTP-- 893 V ++++ +D +L++ + + VE GT++ + ACVV +AV + L SDL + Sbjct 789 NTVTVNFSYDVCEGLDAILDKVMAPFQVEEGTKLEDLACVVQKAVYERL---SDLFSDCP 845 Query 894 ---MGIDLDEWSVATFYLFDDAGEEKLSSRMYCSFYPPDEEEDCEECEDEEETCEHEYGT 950 I+L+++ + +++ E+ L MY S +D E +D E+T E + Sbjct 846 AELRPINLEDFLTSECFVYSKDYEKILMPEMYFSLEDAVPVDD-EMVDDIEDTVEQASDS 904 Query 951 EDDYKGLPLEFGASTETPHVEEEEEEEDWLDDAIEAEPEPEPLPEEPVNQFVGYLKLTDN 1010 +D + G E E+ ++ + D A P GY K+ ++ Sbjct 905 DDQWLG-------------DEGAEDCDNTIQDVDVATSMTTP---------CGYTKIAEH 942 Query 1011 VAIKCIDIVKEAQSAKPTVIVNAANTHLKHGGGVAGALNKATNGAMQNESDEYIRQNGPL 1070 V IKC DIV+EA++ V+VNAAN +L HGGGVAGALN+ATN AMQ ES EYI+ NG L Sbjct 943 VYIKCADIVQEARNYSYAVLVNAANVNLHHGGGVAGALNRATNNAMQKESSEYIKANGSL 1002 Query 1071 TVGGSCLLSGHNLAEK-CLHVVGPNLNAGEDVQLLKRAYENFNSQDVLLAPLLSAGIFGA 1129 GG LLS H LA LHVVGP+ G+D+ LL Y + D +L PL+SAGIFG Sbjct 1003 QPGGHVLLSSHGLASHGILHVVGPDKRLGQDLALLDAVYAAYTGFDSVLTPLVSAGIFGF 1062 Query 1130 KPLQSLKMCVEIVRTQVYLAVNDKSLYDQIVLDYLDSLKPKVESPNKEEEPKLEEPKAVQ 1189 +SL V+ V Y+ V D+ LY++ + D P+ + + P ++ +AV+ Sbjct 1063 TVEESLCSLVKNVACTTYVVVYDRQLYERALATSFDVPGPQ---SSVQHVPAIDWAEAVE 1119 Query 1190 PVAEKPVD 1197 V E VD Sbjct 1120 -VQESIVD 1126 >RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Host translation inhibitor nsp1; Short=nsp1; AltName: Full=Leader protein; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p65 homolog; Contains: RecName: Full=Papain-like proteinase nsp3; Short=PL-PRO; AltName: Full=Non-structural protein 3; Short=nsp3; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; Contains: RecName: Full=3C-like proteinase nsp5; Short=3CL-PRO; Short=3CLp; AltName: Full=nsp5; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; Contains: RecName: Full=Viral protein genome-linked nsp9; AltName: Full=Non-structural protein 9; Short=nsp9; AltName: Full=RNA-capping enzyme subunit nsp9; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; Contains: RecName: Full=RNA-directed RNA polymerase nsp12; Short=Pol; Short=RdRp; AltName: Full=nsp12; Contains: RecName: Full=Helicase nsp13; Short=Hel; AltName: Full=nsp13; Contains: RecName: Full=Guanine-N7 methyltransferase nsp14; Short=ExoN; AltName: Full=nsp14; Contains: RecName: Full=Uridylate-specific endoribonuclease nsp15; AltName: Full=NendoU; AltName: Full=nsp15; Contains: RecName: Full=2'-O-methyltransferase nsp16; AltName: Full=nsp16 [Rousettus bat coronavirus HKU9] Sequence ID: P0C6W5.1 Length: 6930 Range 1: 1170 to 4241 Score:2289 bits(5931), Expect:0.0, Method:Compositional matrix adjust., Identities:1257/3139(40%), Positives:1844/3139(58%), Gaps:135/3139(4%) Query 1302 QGCAGYTLEEAKTALKKCKSAFYVLPSETPNEKEE-----------VLGTVSWNLREMLA 1350 + C + + +K+ K ++P +T ++ + ++ VS + M+ Sbjct 1170 ESCVRDLVRQVVKKVKRDKRPPPIVPQQTVEQQPQEISSPGDCNTVLVDVVSMSFSAMVN 1229 Query 1351 HAEETRKLMPICLDVRAIMATIQRKYKGIKVQEGIVDY-GVRFFFYTSKEPVASIITKLN 1409 +E L+P+ +D A + ++R +EG+ G F+ Y+ +P+ + LN Sbjct 1230 FGKEKGLLIPVVIDYPAFLKVLKR----FSPKEGLFSSNGYEFYGYSRDKPLHEVSKDLN 1285 Query 1410 SLNEPLVTMPIGYVTHGLNLEEAARCMRSLKAPAVVSVSSPDAVTAYNGYLT---SSSKT 1466 SL PL+ +P G++ +G L +A MR L P V V S +V Y Y S T Sbjct 1286 SLGRPLIMIPFGFIVNGQTLAVSAVSMRGLTVPHTVVVPSESSVPLYRAYFNGVFSGDTT 1345 Query 1467 PEEYFVETTSLAGSYRDWSYSGQRTELGVE------FLKRG-------DKIVYHTTGSPI 1513 + FV L G+ RDW +T V+ KRG D +Y TG + Sbjct 1346 AVQDFVVDILLNGA-RDWDV--LQTTCTVDRKVYKTICKRGNTYLCFDDTNLYAITGDVV 1402 Query 1514 EFHLDGEVLPLDKLKSLLSLREVKT---IKVFTTVDNTNLHTHIVDMSMTYGQQFGPTYL 1570 + + K ++ L + IKV TTVD N T +V + +Y Q G + Sbjct 1403 L-----KFATVSKARAYLETKLCAPEPLIKVLTTVDGINYSTVLVSTAQSYRAQIGTVFC 1457 Query 1571 DGADVTKIKPHVNHEGKTFFVLPSDDTLRSEAF-EYYHTIDESFLGRYMSALNHTKKWKF 1629 DG D + P EG + + + A EYY D + + R MS + W + Sbjct 1458 DGHDWSNKNPMPTDEGTHLYKQDNFSSAEVTAIREYYGVDDSNIIARAMSIRKTVQTWPY 1517 Query 1630 PQVGGLTSIKWADNNCYLSSVLLALQQVEVKFNAPALQEAYYRARAGDAANFCALILAYS 1689 V G + D+NCYL+ + LQ ++V F+ P + AY + G+ +++A Sbjct 1518 TVVDGRVLLAQRDSNCYLNVAISLLQDIDVSFSTPWVCRAYDALKGGNPLPMAEVLIALG 1577 Query 1690 NKTVGELGDVRETMTHLLQHANLESAKRVLNVVCKHCGQKTTTLKGVEAVMYMGTLSYDE 1749 T G D ++ +L H + +A+RV+ VC+HCG G +A + G++ D+ Sbjct 1578 KATPGVSDDAHMVLSAVLNHGTV-TARRVMQTVCEHCGVSQMVFTGTDACTFYGSVVLDD 1636 Query 1750 LKTGVSIPCVCGRNATQYLVQQESSFVMMSAPPAEYKLQ-QGAFLCANEYTGNYQCGHYT 1808 L VS+ C CGR A +Y+ +Q+S +++MS P + L G + A + G GHY Sbjct 1637 LYAPVSVVCQCGRPAIRYVSEQKSPWLLMSCTPTQVPLDTSGIWKTAIVFRGPVTAGHYM 1696 Query 1809 HITAKETLYRVDGAHLTKMSEYKGPVTDVFYKETSYTTAIKPVSYKLDGVTYTEIEPKLD 1868 + + D + S+ K P TD+ Y TS+T+ K +Y LDGV T I+P Sbjct 1697 YAVNGTLISVYDANTRRRTSDLKLPATDILYGPTSFTSDSKVETYYLDGVKRTTIDPDFS 1756 Query 1869 GYYKKGNAYYTEQPIDLVPTQPMPNASFDNFKLT-CSNTKFADDLNQMTGFKKPASRELT 1927 Y K+G+ Y+T PI++V P S+D F L+ C N + A+ N+ K +L Sbjct 1757 KYVKRGDYYFTTAPIEVV-AAPKLVTSYDGFYLSSCQNPQLAESFNKAINATKTGPMKL- 1814 Query 1928 VTFFPDLNGDVVAIDYRHYSTSFKKGAKLVHKPILWHINQTTNKTTYKPNIWC-LRCLWS 1986 +T +P++ GDVVAI + + G+ + KP+L+ +PN W L L S Sbjct 1815 LTMYPNVAGDVVAISDDNV-VAHPYGSLHMGKPVLF---------VTRPNTWKKLVPLLS 1864 Query 1987 TKPVDTSNSFEVLVVEDTQGMDNLACESQTTTSEEVVENPTVQKEIIECDVKTTEVVGNV 2046 T V+T N+++VL V D L ++T SEE + +V+ I +K T V+ Sbjct 1865 TVVVNTPNTYDVLAV------DPLPVNNET--SEEPI---SVKAPIPLYGLKATMVLNGT 1913 Query 2047 ILKPSEEG-VKVTQELGHEDLMAAYVEETS-ITIKKPNELSLALGLKTLATHGAAAINSV 2104 P +G + +E DL YVE + K + LS LGL+ + + +N + Sbjct 1914 TYVPGNKGHLLCLKEFTLTDLQTFYVEGVQPFVLLKASHLSKVLGLRV--SDSSLHVNHL 1971 Query 2105 PWSKILAYVKPFLGQTAVITSNCIKKCVQRVFSNYMPYV------------ITLLFQL-C 2151 + AY L T +T++ + V R +V + L +QL Sbjct 1972 SKGVVYAYAATRL--TTRVTTSLLGGLVTRSVRKTADFVRSTNPGSKCVGLLCLFYQLFM 2029 Query 2152 TFTKSTNSRIKASLPTTIAKNSVKSVAKLCLDVCINYVKSPKFSKLFTIVMWLLLLSICL 2211 F + IA N+ V L+ + + +S+L ++ ++L + Sbjct 2030 RFWLLVKKPPIVKVSGIIAYNTGCGVTTCVLNYLRSRCGNISWSRLLKLLRYMLYIWFVW 2089 Query 2212 GSLTYVTAVLGVCLSSLGVPSYCDGVR---ELYINSSNVTTMDFCQGYFPCSVCLSGLDS 2268 LT + GV LS PS + + + V + G+ +C++G+DS Sbjct 2090 TCLT----ICGVWLSEPYAPSLVTRFKYFLGIVMPCDYVLVNETGTGWLH-HLCMAGMDS 2144 Query 2269 LDSYPALETIQVTISSYKLDLTFLGLAAEWLLAYMLFTKFFYLLGLSAIMQAFFGYFASH 2328 LD YPAL Q S + T++ + E AY+L+T ++G+ A++ Y Sbjct 2145 LD-YPALRMQQHRYGS-PYNYTYILMLLEAFFAYLLYTPALPIVGILAVLHLIVLYLPIP 2202 Query 2329 FISNSWLMWFIISIVQMAPVSAMVRMYIFFASFYYVWKSYVHIMDGCTSSTCMMCYKRNR 2388 + NSWL+ F+ I+++ P ++M+RMYI A + +K ++H+ GC + C+MCYK+N Sbjct 2203 -LGNSWLVVFLYYIIRLVPFTSMLRMYIVIAFLWLCYKGFLHVRYGCNNVACLMCYKKNV 2261 Query 2389 ATRVECTTIVNGVKRSFYVYANGGRGFCKAHNWNCLNCDTFCAGSTFISDEVARDLSLQF 2448 A R+EC+T+VNGVKR FYV ANGG FC HNWNC++CDT+ STFI +VA DLS QF Sbjct 2262 AKRIECSTVVNGVKRMFYVNANGGTHFCTKHNWNCVSCDTYTVDSTFICRQVALDLSAQF 2321 Query 2449 KRPINPTDQSAYVVDSVTVKNGALHLYFDKAGQKTYERHPLSHFVNLDNLRANNTKGSLP 2508 KRPI TD++ Y V SV V+NG ++ YF+ GQ++YER P+ F N+ L + KG+ P Sbjct 2322 KRPIIHTDEAYYEVTSVEVRNGYVYCYFESDGQRSYERFPMDAFTNVSKLHYSELKGAAP 2381 Query 2509 -INVIVFDGKSKCEESAAKSASVYYSQLMCQPILLLDQALVSDVGDSTEVSVKMFDAYVD 2567 NV+VFD ++ EE+A K+A++YY+QL C+PILL+D+ +V VGD ++ MF+AY Sbjct 2382 AFNVLVFDATNRIEENAVKTAAIYYAQLACKPILLVDKRMVGVVGDDATIARAMFEAYAQ 2441 Query 2568 TFSATFSVPMEKLKALVATAHSELAKGVALDGVLSTFVSAARQGVVD--TDVDTKDVIEC 2625 + +S+ M+K+K L +TA +++ G+ ++ VL FV + R D +DVDT D++ C Sbjct 2442 NYLLKYSIAMDKVKHLYSTALQQISSGMTVESVLKVFVGSTRAEAKDLESDVDTNDLVSC 2501 Query 2626 LKLSHHSDIEVTGDSCNNFMLTYNKVENMTPRDLGACIDCNARHINAQVAKSHNVSLVWN 2685 ++L H E T DS NN + TY K + ++ ++G + NA+++NA +AK V+L+W Sbjct 2502 IRLCHQEGWEWTTDSWNNLVPTYIKQDTLSTLEVGQFMTANAKYVNANIAKGAAVNLIWR 2561 Query 2686 VKDYMSLSEQLRKQIRSAAKKNNIPFRLTCATTRQVVNVITTKISLKGG-KVVSTWFKLL 2744 D++ LSE +R+Q++ AA+K + +T ++ + V + T + GG + + +W ++L Sbjct 2562 YADFIKLSESMRRQLKVAARKTGLNLLVTTSSLKADVPCMVTPFKIIGGHRRIVSWRRVL 2621 Query 2745 LKVTLLCVL--AALFC--YVIMPVHSLSVHDGYTNEIIGYKAIQDGVTRDIVSTDDCFAN 2800 + V +L V+ F Y++ P+ ++ +K I + V RDI S D CFAN Sbjct 2622 IHVFMLLVVLNPQWFTPWYIMRPIEY---------NVVDFKVIDNAVIRDITSADQCFAN 2672 Query 2801 KHAGFDSWFSQRGGSYRNDKNCPVVAAIITREIGFIVPGLPGTVLRALNGDFLHFLPRVF 2860 K + F++W+S R GSY N + CP+V +++ +G +VPGLP LR + L + Sbjct 2673 KFSAFENWYSNRYGSYVNSRGCPMVVGVVSDIVGSLVPGLPARFLR-VGTTLLPLVNYGL 2731 Query 2861 SAVGNICYTPSKLIEYSDFATSACVLAAECTIFKDAMGKPVPYCYDTNLLEGSISYSELR 2920 AVG++CYTP I Y F TSACVLAA CT+F A G+ +PYC D L++ + Y L+ Sbjct 2732 GAVGSVCYTPHYAINYDVFDTSACVLAATCTLFSSASGERMPYCADAALIQNASRYDMLK 2791 Query 2921 PDTRYVLMDGS-IIQFPNTYLEGSVRVVTTFDAEYCRHGTCERSEVGVCLSTSGRWVLNN 2979 P Y + S I+FP + V +V T EYC+ G C+ SE G+C+S RWV+NN Sbjct 2792 PHVMYPFYEHSGYIRFPEV-ISAGVHIVRTMAMEYCKVGRCDVSEAGLCMSLQPRWVVNN 2850 Query 2980 EHYRALPGVFCGVDAMNLIANIFTPLVQPVGALDVSASVVAGGIIAILVTCAAYYFMKFR 3039 ++R GV+CG A +L N+ P+ PVGA+D++ S++ G ++A++V+ + YY ++FR Sbjct 2851 AYFRQQSGVYCGTSAFDLFMNMLLPIFTPVGAVDITTSILMGALLAVVVSMSLYYLLRFR 2910 Query 3040 RAFGEYNHVVAANALLFLMSFTILCLAPAYSFLPGVYSIFYLYLTFYFTNDVSFLAHLQW 3099 RAFG+Y+ V+ N L F+++ +LCL Y LP +Y++ +LY T YF +D++ + H+ + Sbjct 2911 RAFGDYSGVIFTNILAFVLNVIVLCLEGPYPMLPSIYAMVFLYATCYFGSDIACMMHVSF 2970 Query 3100 FAMFSPIVPFWITAIYVFCISLKHFHWFFSNYLKKRVMFNGVTFSTFEEAALCTFLLNKE 3159 MF+ +VP W+T +Y+ + +H WF S K+ V + F +F++AAL TF+L+KE Sbjct 2971 LIMFAGVVPLWVTVLYIVVVLSRHILWFASLCTKRTVQVGDLAFHSFQDAALQTFMLDKE 3030 Query 3160 MYLRLRSETLLPLTQYNRYLALYNKYKYFSGALDTTSYREAACCHLAKALNDFSNSGADV 3219 ++LRL+ E + Y +YLA+YNKYKY+SG +DT +YREAAC HL AL +SN G D Sbjct 3031 VFLRLKRE--ISSDAYFKYLAMYNKYKYYSGPMDTAAYREAACSHLVMALEKYSNGGGDT 3088 Query 3220 LYQPPQTSITSAVLQSGFRKMAFPSGKVEGCMVQVTCGTTTLNGLWLDDTVYCPRHVVCT 3279 +YQPP+ S+ SA LQ+G +MA PSG VE C+V+V G+ TLNG+WLD+ V CPRHV+C+ Sbjct 3089 IYQPPRCSVASAALQAGLTRMAHPSGLVEPCLVKVNYGSMTLNGIWLDNFVICPRHVMCS 3148 Query 3280 AEDMLNPNYDDLLIRKSNHSFLVQAGNVQLRVIGHSMQNCLLRLKVDTSNPKTPKYKFVR 3339 +++ NP+Y L +R +N+ F V +RVIGH+M+ LL+L VD +NPKTP Y F+R Sbjct 3149 RDELANPDYPRLSMRAANYDFHVSQNGHNIRVIGHTMEGSLLKLTVDVNNPKTPAYSFIR 3208 Query 3340 IQPGQTFSVLACYNGSPSGVYQCAMRPNHTIKGSFLNGSCGSVGFNIDYDCVSFCYMHHM 3399 + GQ S+LACY+G P+GVY C +R N T++ SFL GSCGS GF ++ V FCY+H + Sbjct 3209 VSTGQAMSLLACYDGLPTGVYTCTLRSNGTMRASFLCGSCGSPGFVMNGKEVQFCYLHQL 3268 Query 3400 ELPTGVHAGTDLEGKFYGPFVDRQTAQAAGTDTTITLNVLAWLYAAVINGDRWFLNRFTT 3459 ELP G H GTD G FYGPF D+Q Q A D TIT+NVLAWLYAAV++G+ WFL + + Sbjct 3269 ELPNGTHTGTDFSGVFYGPFEDKQVPQLAAPDCTITVNVLAWLYAAVLSGENWFLTKSSI 3328 Query 3460 TLNDFNLVAMKYNYEPLTQDHVDILGPLSAQTGIAVLDMCAALKELLQNGMNGRTILGST 3519 + +FN A+KY + +T + + +L PL+A+TGI+V M +ALK LL G GRTI+GS Sbjct 3329 SPAEFNNCAVKYMCQSVTSESLQVLQPLAAKTGISVERMLSALKVLLSAGFCGRTIMGSC 3388 Query 3520 ILEDEFTPFDVVRQCSGVTFQGKFKKIVKGTHHWMLLTFLTSLLILVQSTQWSLFFFVYE 3579 LEDE TP+D+ RQ GV QGKF+ + + T W + F+ ++LIL+Q QW+ + Sbjct 3389 SLEDEHTPYDIGRQMLGVKLQGKFQSMFRWTLQWFAIIFVLTILILLQLAQWTFVGALPF 3448 Query 3580 NAFLPFALGIMAV-AACAMLLVKHKHAFLCLFLLPSLATVAYFNMVYMP---ASWVMRIM 3635 LP +G +AV LL+KHKH +L ++LLP AY+N Y P +++ + Sbjct 3449 TLLLPL-IGFVAVCVGFVSLLIKHKHTYLTVYLLPVAMVTAYYNFQYTPEGVQGYLLSLY 3507 Query 3636 TWLELADTSLSGYRLKDCVMYASALVLLILMTARTVYDDAARRVWTLMNVITLVYKVYYG 3695 ++ + G L ++ + A LL + R V DA R+W + + +Y + G Sbjct 3508 NYVNPGRIDVIGTDLLTMLIISVACTLL---SVRMVRTDAYSRIWYVCTAVGWLYNCWTG 3564 Query 3696 NSLDQAISMWALVISVTSNYSGVVTTIMFLARAIVFVCVEYYPLLFITGNTLQCIMLVYC 3755 ++ AIS ++SV +NY+GV ++ A+ +V+V P + + +C+++ Y Sbjct 3565 SADTVAISYLTFMVSVFTNYTGVACASLYAAQFMVWVLKFLDPTILLLYGRFRCVLVCYL 3624 Query 3756 FLGYCCCCYFGLFCLLNRYFRLTLGVYDYLVSTQEFRYMNSQGLLPPKSSIDAFKLNIKL 3815 +GY C CYFG+F L+NR FR TLG Y+Y+VS+QE RYMNS GLLPP +S A LNIKL Sbjct 3625 LVGYLCTCYFGVFNLINRLFRCTLGNYEYVVSSQELRYMNSHGLLPPTNSWQALMLNIKL 3684 Query 3816 LGIGGKPCIKVATVQSKMSDVKCTSVVLLSVLQQLRVESSSKLWAQCVQLHNDILLAKDT 3875 GIGG P +V+T+QS M+D+KCTSVVLLSVLQQLRVESSSKLWA CV+LHN+IL + Sbjct 3685 AGIGGIPIYRVSTIQSNMTDLKCTSVVLLSVLQQLRVESSSKLWALCVKLHNEILASNSP 3744 Query 3876 TEAFEKMVSLLSVLLSMQGAVDINKLCEEMLDNRATLQAIASEFSSLPSYAAYATAQEAY 3935 TEAFE VSLLSVLLS+ GA+++++LC +L+N + LQA+ASEFS+L SY Y AQ+AY Sbjct 3745 TEAFEAFVSLLSVLLSLPGAINLDELCSSILENNSVLQAVASEFSNLSSYVDYENAQKAY 3804 Query 3936 EQAVSNGDSEVVLKKLKKSLNVAKSEFDHDAAMQRKLEKMADQAMTQMYKQARSEDKRAK 3995 + AV+ G + LKK++NVAKS D D A RKLE+M++ AMT MYKQAR+ED+R+K Sbjct 3805 DTAVATGAPASTVNALKKAMNVAKSVLDKDVATTRKLERMSELAMTAMYKQARAEDRRSK 3864 Query 3996 VTSAMQTMLFTMLRKLDNDALNNIINNARDGCVPLNIIPLTTAAKLMVVVPDYGTYKNTC 4055 VT+AMQTMLF M+R+LD+DAL+NI+NNAR+G VPL +IP T A KL++VVPD+ Y T Sbjct 3865 VTAAMQTMLFNMIRRLDSDALSNILNNARNGVVPLGVIPRTAANKLLLVVPDFSVYTATI 3924 Query 4056 DGNTFTYASALWEIQQVVDADSKIVQLSEINMDNSPNLAWPLIVTALR--ANSAVKLQNN 4113 T TYA + W++ QV DAD K V ++I +NS NLAWPL+VTA R A S VKLQNN Sbjct 3925 TMPTLTYAGSAWDVMQVADADGKTVNATDITRENSVNLAWPLVVTAQRQQATSPVKLQNN 3984 Query 4114 ELSPVALRQMSCAAGTTQTACTDDNALAYYNNAKGGRFVLALLSDHQDLKWARFPKSDGT 4173 EL P +++M+ AG +QTAC D A+AYYN K GR V+A+L+D L +A+ KS G Sbjct 3985 ELMPQTVKRMNVVAGVSQTACVTD-AVAYYNATKEGRHVMAILADTDGLAFAKVEKSTGD 4043 Query 4174 GTIYTELEPPCRFVTDTPKGPKVKYLYFIKGLNNLNRGMVLGSLAATVRLQAGNATEVPA 4233 G + ELEPPC+F+ DTPKGP +KYLYF KGL NL RG VLG+LA TVRL AG+ATEV + Sbjct 4044 GFVILELEPPCKFMVDTPKGPALKYLYFTKGLKNLCRGTVLGTLACTVRLHAGSATEVAS 4103 Query 4234 NSTVLSFCAFAVDPAKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPEANMDQESFG 4293 NS++LS C+F+VDP YKDYL +GG PI NCVKML HTGTG AIT P+AN+DQESFG Sbjct 4104 NSSILSLCSFSVDPEATYKDYLDNGGSPIGNCVKMLTPHTGTGLAITAKPDANIDQESFG 4163 Query 4294 GASCCLYCRCHIDHPNPKGFCDLKGKYVQIPTTCANDPVGFTLRNTVCTVCGMWKGYGCS 4353 GASCCLYCRCHI+HP G C KGK+VQIP NDP+GF +RN VC VC MW+GYGC Sbjct 4164 GASCCLYCRCHIEHPGASGVCKYKGKFVQIPLVGVNDPIGFCIRNVVCAVCNMWQGYGCP 4223 Query 4354 CDQLREPMMQSADASTFLN 4372 C LRE +Q+ D FLN Sbjct 4224 CSSLREINLQARD-ECFLN 4241 Range 2: 310 to 1126 Score:263 bits(673), Expect:2e-68, Method:Compositional matrix adjust., Identities:255/897(28%), Positives:397/897(44%), Gaps:100/897(11%) Query 321 MKCNHCDEVSWQTCDFLKATCEQCGTENLVCEGPTTCGYLPTNAVVKMPCPACQDPEVGP 380 +KC++CD W + CG E + ++C + V+K C D G Sbjct 310 LKCSYCDYYGWTPLKDIGTVNCLCGAE---FQLTSSCVDAESAGVIKPGCVMLLDKSPG- 365 Query 381 EHSVADYHNHSNIETRLRKGGRTKC-FGGCVFSYVGCYNKRAYWVPRASANIGANHTGIT 439 RL G RT FGG ++S +G N WVPRA + + H+G Sbjct 366 --------------MRLIPGNRTYVSFGGAIWSPIGKVNGVTVWVPRAYSIVAGEHSGAV 411 Query 440 GE-NVETLNEDLLEILNRERVNINIVGDFRFNEEVAIILASFSASPSA----FIETVKGL 494 G + +N++L+E L I + D N A +A+ A +E+++GL Sbjct 412 GSGDTVAINKELVEYLIE---GIRVDADTLDNPTCATFIANLDCDTKAPVVHTVESLQGL 468 Query 495 DYKSFKVIVESCGNYKVTNG-KPVTGAWNIGQQRSILTPLCGFPSQAAGVIRSIFSRTLD 553 C K+ G KP+ + + L + Q A ++ SRT + Sbjct 469 -----------CLANKIMLGDKPLP----TDEFHPFIVGL-AYHVQRACWYGALASRTFE 512 Query 554 AANHSILDLQRAAVTTLDGISEQSLRLVDAMVYTSDLLTNSVVVMAY-VTGGLVQQTMQW 612 A D R + ++ VY + + AY V + ++ Sbjct 513 A----FRDFVRTEEERFAQFFGKVCAPINGCVYLAYTTGRVTLFSAYQVLNTAIAKSKDA 568 Query 613 LSNMLGTAVDKLKPVFTWVEAKLSAGVEFLRDAW----EILKFLITGVFDVIKGQIQVAT 668 + VD LKP+ WV K+S + AW E L L F V+KG+ Q Sbjct 569 FGGVAAIVVDMLKPILEWVLKKMSIA----KGAWLPYAEGLLALFKAQFTVVKGKFQFLR 624 Query 669 DNIKECVKIFLGVVNKALEMCLDQVTIAGTKLRALNLGEVFIAQSRGLYRQCIRGKEQLQ 728 ++ ++ + L V AG K+ AL G + +G+ + ++L Sbjct 625 ASLNSKCHSLCDLLTTIMSKLLTSVKWAGCKVDALYTGTYYYFSRKGVLTEVQLCAKRLG 684 Query 729 LLM-PLKAPKEVTFLEGDAHDTV-LTSEEVVLKSGELEALETPIDSFTSGAVVGTPVCIN 786 LL+ P + EV L+GD V LT E+ +G LE + D V GT V + Sbjct 685 LLLTPKQQKMEVEVLDGDFDAPVTLTDLELEECTGVLEEVFGASDV---KLVKGTLVSLA 741 Query 787 GLMLLELENKEQYCALSPGLLATNNVFRLKGGAPVKGVTFGEDTVLEVQGYKNVKITFEL 846 + + E+ Y + G + FRL+GG V VTFG++ V + V ++++ Sbjct 742 SKLFVRTEDGFLYRYVKSGGV-LGKAFRLRGGG-VSKVTFGDEEVHTIPNTVTVNFSYDV 799 Query 847 DVRVDKVLNEKCSVYTVESGTEVTEFACVVAEAVVKTLQPVSDLLTP-----MGIDLDEW 901 +D +L++ + + VE GT++ + ACVV +AV + L SDL + I+L+++ Sbjct 800 CEGLDAILDKVMAPFQVEEGTKLEDLACVVQKAVYERL---SDLFSDCPAELRPINLEDF 856 Query 902 SVATFYLFDDAGEEKLSSRMYCSFYPPDEEEDCEECEDEEETCEHEYGTEDDYKGLPLEF 961 + +++ E+ L MY S +D E +D E+T E ++D + G Sbjct 857 LTSECFVYSKDYEKILMPEMYFSLEDAVPVDD-EMVDDIEDTVEQASDSDDQWLG----- 910 Query 962 GASTETPHVEEEEEEEDWLDDAIEAEPEPEPLPEEPVNQFVGYLKLTDNVAIKCIDIVKE 1021 E E+ ++ + D A P GY K+ ++V IKC DIV+E Sbjct 911 --------DEGAEDCDNTIQDVDVATSMTTP---------CGYTKIAEHVYIKCADIVQE 953 Query 1022 AQSAKPTVIVNAANTHLKHGGGVAGALNKATNGAMQNESDEYIRQNGPLTVGGSCLLSGH 1081 A++ V+VNAAN +L HGGGVAGALN+ATN AMQ ES EYI+ NG L GG LLS H Sbjct 954 ARNYSYAVLVNAANVNLHHGGGVAGALNRATNNAMQKESSEYIKANGSLQPGGHVLLSSH 1013 Query 1082 NLAEK-CLHVVGPNLNAGEDVQLLKRAYENFNSQDVLLAPLLSAGIFGAKPLQSLKMCVE 1140 LA LHVVGP+ G+D+ LL Y + D +L PL+SAGIFG +SL V+ Sbjct 1014 GLASHGILHVVGPDKRLGQDLALLDAVYAAYTGFDSVLTPLVSAGIFGFTVEESLCSLVK 1073 Query 1141 IVRTQVYLAVNDKSLYDQIVLDYLDSLKPKVESPNKEEEPKLEEPKAVQPVAEKPVD 1197 V Y+ V D+ LY++ + D P+ + + P ++ +AV+ V E VD Sbjct 1074 NVACTTYVVVYDRQLYERALATSFDVPGPQ---SSVQHVPAIDWAEAVE-VQESIVD 1126 >RecName: Full=Replicase polyprotein 1a; Short=pp1a; AltName: Full=ORF1a polyprotein; Contains: RecName: Full=Host translation inhibitor nsp1; Short=nsp1; AltName: Full=Leader protein; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p65 homolog; Contains: RecName: Full=Papain-like protease nsp3; Short=PL-PRO; AltName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=PL2-PRO; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; Contains: RecName: Full=3C-like proteinase nsp5; Short=3CL-PRO; Short=3CLp; AltName: Full=nsp5; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; Contains: RecName: Full=RNA-capping enzyme subunit nsp9; AltName: Full=Non-structural protein 9; Short=nsp9; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; Contains: RecName: Full=Non-structural protein 11; Short=nsp11 [Betacoronavirus England 1] Sequence ID: K9N638.1 Length: 4391 Range 1: 1156 to 4385 Score:2202 bits(5706), Expect:0.0, Method:Compositional matrix adjust., Identities:1254/3289(38%), Positives:1870/3289(56%), Gaps:204/3289(6%) Query 1229 INGKLYQDSQNMLRGEDMSFLEKDAPYIVGD-VITSG-----DITCVIIPAKKSGGTTEM 1282 I G + S+ ++ E ++ P VGD V+ G +I V+ P ++ + Sbjct 1156 IAGAINAASKGAVQKESDEYILAKGPLQVGDSVLLQGHSLAKNILHVVGPDARAKQDVSL 1215 Query 1283 LAR---ALKEVPVAEYITTYPGQGCAG--------YTLEEAKTALKKCKSAFYVLPSETP 1331 L++ A+ P+ +T G G Y + EAKT + ++ V S T Sbjct 1216 LSKCYKAMNAYPLV--VTPLVSAGIFGVKPAVSFDYLIREAKTRVLVVVNSQDVYKSLTI 1273 Query 1332 NEKEEVLGTVSWNLREMLAHAEETRKLMPICLDVRAIMATIQRKYKGIKVQEGIVDYGVR 1391 + + L LR + A++ + +C D A ++ K + VD GV+ Sbjct 1274 VDIPQSLTFSYDGLRGAIRKAKDYGFTVFVCTDNSANTKVLRNKGVDYTKKFLTVD-GVQ 1332 Query 1392 FFFYTSKEPVASIITKLNSLNEPLVTMPIGYVTHGLNLEEAARCMRSLKAPAVVSVSSPD 1451 ++ YTSK+ + I+ + N + +++MP+GYV+HGL+L +A +R + P V +++ + Sbjct 1333 YYCYTSKDTLDDILQQANK-SVGIISMPLGYVSHGLDLIQAGSVVRRVNVPYVCLLANKE 1391 Query 1452 AVTAYNGYLTSSSK--TPEEYFVETTSLAGSYRDWSYSGQRTELGVEFLKRG-------- 1501 L S P E F++ G Y W EL V+ L+ Sbjct 1392 Q----EAILMSEDVKLNPSEDFIKHVRTNGGYNSWHLV--EGELLVQDLRLNKLLHWSDQ 1445 Query 1502 -----DKIVY---HTTGSPIEFHLDGEVLPLDKLKSLLSLREVK--TIKVFTTVDNTNLH 1551 D + Y ++T P E L ++ L R + TI+V TVD N Sbjct 1446 TICYKDSVFYVVKNSTAFPFE--------TLSACRAYLDSRTTQQLTIEVLVTVDGVNFR 1497 Query 1552 THIVDMSMTYGQQFGPTYLDGADVTKIKPHVNHEGKTFFV---LPSDDTLRSEAFEYYHT 1608 T +++ TY Q G + +GAD++ P G + ++ L +D+T + E Y Sbjct 1498 TVVLNNKNTYRSQLGCVFFNGADISDTIPDEKQNGHSLYLADNLTADETKALK--ELYGP 1555 Query 1609 IDESFLGRYMSALNHTKKWKFPQVGGLTSIKWADNNCYLSSVLLALQQV-EVKFNAPALQ 1667 +D +FL R+ S KWK + S+K +DNNCYL++V++ L + ++KF PALQ Sbjct 1556 VDPTFLHRFYSLKAAVHKWKMVVCDKVRSLKLSDNNCYLNAVIMTLDLLKDIKFVIPALQ 1615 Query 1668 EAYYRARAGDAANFCALILAYSNKTVGELGDVRETMTHLLQHANLE-SAKRVLNVVCKHC 1726 A+ + + GD+ +F ALI+AY N T G D + +L A L SA+ V C C Sbjct 1616 HAFMKHKGGDSTDFIALIMAYGNCTFGAPDDASRLLHTVLAKAELCCSARMVWREWCNVC 1675 Query 1727 GQKTTTLKGVEAVMYMGTLSYDELKTGVSIPCVCGRNATQYLVQQESSFVMMSAPPAEYK 1786 G K L+G++A Y+G + ++L+ ++ C CG + +V+ + ++++S P E Sbjct 1676 GIKDVVLQGLKACCYVGVQTVEDLRARMTYVCQCGGERHRQIVEHTTPWLLLSGTPNEKL 1735 Query 1787 LQQGA---FLCANEYTG-NYQCGHYTHITAKETL-YRVDGAHLTKMSEYKGPVTDVFYKE 1841 + F+ N + G GHY H K L + D ++K S++K VTDV + Sbjct 1736 VTTSTAPDFVAFNVFQGIETAVGHYVHARLKGGLILKFDSGTVSKTSDWKCKVTDVLFPG 1795 Query 1842 TSYTTAIKPVSYKLDGVTYTEIEPKLDGYYKKGNAYYT-EQPIDLVPTQPMPNASFDNFK 1900 Y++ V Y LDG TE++P L +Y K Y+T E P+ P + + + N Sbjct 1796 QKYSSDCNVVRYSLDGNFRTEVDPDLSAFYVKDGKYFTSEPPVTYSPATILAGSVYTNSC 1855 Query 1901 LTCSNTKFADD-----LNQMTGF--KKPASRELTVTFFPDLNGDVVAIDYRHYSTSFKKG 1953 L S+ + D N + GF KP +++ T +F P +GDV+ ++ Y +K G Sbjct 1856 LVSSDGQPGGDAISLSFNNLLGFDSSKPVTKKYTYSFLPKEDGDVLLAEFDTYDPIYKNG 1915 Query 1954 AKLVHKPILWHINQTTNKTTYKPNIWCLRCLWSTKPVDTSNSFEVLVVEDTQGMDNLACE 2013 A KPILW + + K N LR ++ P++ N F L VE T Sbjct 1916 AMYKGKPILWVNKASYDTNLNKFNRASLRQIFDVAPIELENKFTPLSVESTP-------- 1967 Query 2014 SQTTTSEEVVENPTV-----QKE--IIECD-VKTTEVVGNVILKPSEEGVKVTQELGHED 2065 VE PTV Q+E I++C + V NV + G V + L ED Sbjct 1968 ---------VEPPTVDVVALQQEMTIVKCKGLNKPFVKDNVSFVADDSGTPVVEYLSKED 2018 Query 2066 LMAAYVE-ETSITIKKPNELSLALGLKTLAT---HGAAAINSVPWSKILAYVKPFLGQ-- 2119 L YV+ + + + K N LS L L T+ + + AA S+ L + F + Sbjct 2019 LHTLYVDPKYQVIVLKDNVLSSMLRLHTVESGDINVVAASGSLTRKVKLLFRASFYFKEF 2078 Query 2120 ------TAVITSNCIKKCVQR------VFSNYMPYVITL-LFQLCTFTKST--NSRIKAS 2164 +CIK V+ + + +V L + L F+ S + +K S Sbjct 2079 ATRTFTATTAVGSCIKSVVRHLGVTKGILTGCFSFVKMLFMLPLAYFSDSKLGTTEVKVS 2138 Query 2165 LPTT---IAKNSVKSVAKLCLDVCINYVKSPKFSKLFTIVMWLLLLSICLGSLTYVTAVL 2221 T + N VK +D+ ++ ++ + +++ L + L S+ Y V Sbjct 2139 ALKTAGVVTGNVVKQCCTAAVDLSMDKLRRVDWKSTLRLLLMLCTTMVLLSSV-YHLYVF 2197 Query 2222 GVCLSS--------------------LGVPSYCDGVRELY-INSSNVTTMDFCQGYFP-C 2259 LSS LG+ S CDG+ Y NS +V T FC C Sbjct 2198 NQVLSSDVMFEDAQGLKKFYKEVRAYLGISSACDGLASAYRANSFDVPT--FCANRSAMC 2255 Query 2260 SVCLSGLDSLDSYPALETIQVTISSYKLDLTFLGLAAEWLLAYMLFTKFFYLLGLSAIMQ 2319 + CL DS+ YPAL+ +Q +S Y L++ +L A E LAYML+T F L L+ + Sbjct 2256 NWCLISQDSITHYPALKMVQTHLSHYVLNIDWLWFAFETGLAYMLYTSAFNWLLLAGTLH 2315 Query 2320 AFFGY------FASHFISNSWLMWFIISIVQMAPVSAMVRMYIFFASFYYVWKSYVHIMD 2373 FF + S+ + S W I P++ +VRMY A + + K Y H+++ Sbjct 2316 YFFAQTSIFVDWRSYNYAVSSAFWLFTHI----PMAGLVRMYNLLACLWLLRKFYQHVIN 2371 Query 2374 GCTSSTCMMCYKRNRATRVECTTIVNGVKRSFYVYANGGRGFCKAHNWNCLNCDTFCAGS 2433 GC + C++CYKRNR TRVE +T+V G KR+FY+ ANGG FC+ HNWNC++CDT G+ Sbjct 2372 GCKDTACLLCYKRNRLTRVEASTVVCGGKRTFYITANGGISFCRRHNWNCVDCDTAGVGN 2431 Query 2434 TFISDEVARDLSLQFKRPINPTDQSAYVVDSVTVKNGALHLYFDKAGQKTYERHPLSHFV 2493 TFI +EVA DL+ +RPIN TD+S Y VDSVTVK + + + GQ YER PL F Sbjct 2432 TFICEEVANDLTTALRRPINATDRSHYYVDSVTVKETVVQFNYRRDGQPFYERFPLCAFT 2491 Query 2494 NLDNLR----ANNTKGSLPINVIVFDGKSKCEESAAKSASVYYSQLMCQPILLLDQALVS 2549 NLD L+ T G N I++D + +ES A+SA VYYSQ++C+ ILL+D +LV+ Sbjct 2492 NLDKLKFKEVCKTTTGIPEYNFIIYDSSDRGQESLARSACVYYSQVLCKSILLVDSSLVT 2551 Query 2550 DVGDSTEVSVKMFDAYVDTFSATFSVPMEKLKALVATAHSELAKGVALDGVLSTFVSAAR 2609 VGDS+E++ KMFD++V++F + ++V +KL+ L++TA + +G VL+TF+ AAR Sbjct 2552 SVGDSSEIATKMFDSFVNSFVSLYNVTRDKLEKLISTARDGVRRGDNFHSVLTTFIDAAR 2611 Query 2610 QGV-VDTDVDTKDVIECLKLSHHSDIEVTGDSCNNFMLTYNKVENMTPRDLGACIDCNAR 2668 V++DV+T ++++ ++ +H DI++T +S NN++ +Y K ++++ DLG+ IDCNA Sbjct 2612 GPAGVESDVETNEIVDSVQYAHKHDIQITNESYNNYVPSYVKPDSVSTSDLGSLIDCNAA 2671 Query 2669 HINAQVAKSHNVSLVWNVKDYMSLSEQLRKQIRSAAKKNNIPFRLTCATTRQVVNVITTK 2728 +N V ++ N + +WN YM LS+ L++QIR A +K N+ FRLT + R N+++ + Sbjct 2672 SVNQIVLRNSNGACIWNAAAYMKLSDALKRQIRIACRKCNLAFRLTTSKLRANDNILSVR 2731 Query 2729 ISLKGGKVVS---TWFKLLLKVTL--------LCVLAALFCYVIMPVHSLSVHDGYTNEI 2777 + K+V TWF L TL + L A+ Y+ +P S+ + Y + I Sbjct 2732 FT--ANKIVGGAPTWFNALRDFTLKGYVLATIIVFLCAVLMYLCLPTFSMVPVEFYEDRI 2789 Query 2778 IGYKAIQDGVTRDIVSTDDCFANKHAGFDSWFSQR-GGSYRNDKNCPVVAAIITREIGFI 2836 + +K + +G+ RD+ D CFANKH F W+ + GG Y N CP+ A+I G Sbjct 2790 LDFKVLDNGIIRDVNPDDKCFANKHRSFTQWYHEHVGGVYDNSITCPLTVAVIAGVAGAR 2849 Query 2837 VPGLPGTVLRALNGDFLHFLPRVFSAVGNICYTPSKLIEYSDFATSACVLAAECTIFKDA 2896 +P +P T L +N + F+ RVF+ G++CYTP I Y F+ S C+L +ECT+F+DA Sbjct 2850 IPDVP-TTLAWVNNQIIFFVSRVFANTGSVCYTPIDEIPYKSFSDSGCILPSECTMFRDA 2908 Query 2897 MGKPVPYCYDTNLLEGSISYSELRPDTRYVLMDGSI-IQFPNTYLEGSVRVVTTFDAEYC 2955 G+ PYC+D +L G+ +YS++RP RY L DG++ I+FP E ++R+ T +YC Sbjct 2909 EGRMTPYCHDPTVLPGAFAYSQMRPHVRYDLYDGNMFIKFPEVVFESTLRITRTLSTQYC 2968 Query 2956 RHGTCERSEVGVCLSTSGRWVLNNEHYRALPGVFCGVDAMNLIANIFTPLVQPVGALDVS 3015 R G+CE ++ GVC++T+G W + N+H+ PGV+CG D ++++ + L QP+ ++ Sbjct 2969 RFGSCEYAQEGVCITTNGSWAIFNDHHLNRPGVYCGSDFIDIVRRLAVSLFQPITYFQLT 3028 Query 3016 ASVVAGGIIAILVTCAAYYFMKFRRAFGEYNHVVAANALLFLMSFTILCLAPAYSFLPGV 3075 S+V G + +T YY K +RAF +Y + +++ +C + Sbjct 3029 TSLVLGIGLCAFLTLLFYYINKVKRAFADYTQCAVIAVVAAVLNSLCICFVASIPLCIVP 3088 Query 3076 YSIFYLYLTFYFTNDVSFLAHLQWFAMFSPIVPFWITAIYVFCISLKHFHWFFSNYLKKR 3135 Y+ Y Y TFYFTN+ +F+ H+ W+ MF PIVP W+T +Y + +HF W + + KK Sbjct 3089 YTALYYYATFYFTNEPAFIMHVSWYIMFGPIVPIWMTCVYTVAMCFRHFFWVLAYFSKKH 3148 Query 3136 V--MFNGVTFSTFEEAALCTFLLNKEMYLRLRSETLLPLTQYNRYLALYNKYKYFSGALD 3193 V +G +F++AA F++NK+ Y LR+ L Y+R+L L+NKYKYFSGA++ Sbjct 3149 VEVFTDGKLNCSFQDAASNIFVINKDTYAALRNS--LTNDAYSRFLGLFNKYKYFSGAME 3206 Query 3194 TTSYREAACCHLAKALNDFSNSGADVLYQPPQTSITSAVLQSGFRKMAFPSGKVEGCMVQ 3253 T +YREAA CHLAKAL +S +G+D+LYQPP SITS VLQSG KM+ PSG VE CMVQ Sbjct 3207 TAAYREAAACHLAKALQTYSETGSDLLYQPPNCSITSGVLQSGLVKMSHPSGDVEACMVQ 3266 Query 3254 VTCGTTTLNGLWLDDTVYCPRHVVCTAEDMLNPNYDDLLIRKSNHSFLVQ---AGNVQLR 3310 VTCG+ TLNGLWLD+TV+CPRHV+C A+ + +PNYD LLI +NHSF VQ LR Sbjct 3267 VTCGSMTLNGLWLDNTVWCPRHVMCPADQLSDPNYDALLISMTNHSFSVQKHIGAPANLR 3326 Query 3311 VIGHSMQNCLLRLKVDTSNPKTPKYKFVRIQPGQTFSVLACYNGSPSGVYQCAMRPNHTI 3370 V+GH+MQ LL+L VD +NP TP Y F ++PG FSVLACYNG P+G + MRPN+TI Sbjct 3327 VVGHAMQGTLLKLTVDVANPSTPAYTFTTVKPGAAFSVLACYNGRPTGTFTVVMRPNYTI 3386 Query 3371 KGSFLNGSCGSVGFNIDYDCVSFCYMHHMELPTGVHAGTDLEGKFYGPFVDRQTAQAAGT 3430 KGSFL GSCGSVG+ + ++FCYMH MEL G H G+ +G YG F+D+Q Q T Sbjct 3387 KGSFLCGSCGSVGYTKEGSVINFCYMHQMELANGTHTGSAFDGTMYGAFMDKQVHQVQLT 3446 Query 3431 DTTITLNVLAWLYAAVINGDRWFLNRFTTTLNDFNLVAMKYNY-EPLTQDHVDILGPLSA 3489 D ++NV+AWLYAA++NG WF+ T++ FN A+ + E + VD+L + Sbjct 3447 DKYCSVNVVAWLYAAILNGCAWFVKPNRTSVVSFNEWALANQFTEFVGTQSVDML---AV 3503 Query 3490 QTGIAVLDMCAALKELLQNGMNGRTILGSTILEDEFTPFDVVRQCSGVTFQGKFKKIVKG 3549 +TG+A+ + A+++L G G+ ILGST+LEDEFTP DV Q GV Q +K+ G Sbjct 3504 KTGVAIEQLLYAIQQLY-TGFQGKQILGSTMLEDEFTPEDVNMQIMGVVMQSGVRKVTYG 3562 Query 3550 THHWMLLTFLTSLLILVQSTQWSLFFFVYENAFLPFALGIMAVAACAMLLVKHKHAFLCL 3609 T HW+ T +++ +I++Q+T+++L+ +++E + A MLLVKHKH FL L Sbjct 3563 TAHWLFATLVSTYVIILQATKFTLWNYLFETIPTQLFPLLFVTMAFVMLLVKHKHTFLTL 3622 Query 3610 FLLPSLATVAYFNMVYMP----ASWVMRIMTWLELADTSLSGYRLKDCVMYASALVLLIL 3665 FLLP + Y N+VY P +S ++ + WL + + D +Y S ++L++ Sbjct 3623 FLLPVAICLTYANIVYEPTTPISSALIAVANWLAPTNAYMRTTH-TDIGVYISMSLVLVI 3681 Query 3666 MTARTVYDDAARRVWTLMNVITLVYKVYYGNSLDQAISMWALVISVTSNYSGVVTTIMFL 3725 + R + L + + +Y G + I+ V ++TS+Y+ V + L Sbjct 3682 VVKRLYNPSLSNFALALCSGVMWLYTYSIGEA-SSPIAYLVFVTTLTSDYTITVFVTVNL 3740 Query 3726 ARAIVFVCVEYYPLLFITGNTLQCIMLVYCFLGYCCCCYFGLFCLLNRYFRLTLGVYDYL 3785 A+ + Y P L + ++ I+L+Y LG+ C CYFG+F LLN R +GVYD+ Sbjct 3741 AKVCTYAIFAYSPQLTLVFPEVKMILLLYTCLGFMCTCYFGVFSLLNLKLRAPMGVYDFK 3800 Query 3786 VSTQEFRYMNSQGLLPPKSSIDAFKLNIKLLGIGGKPCIKVATVQSKMSDVKCTSVVLLS 3845 VSTQEFR+M + L P++S +A LN KL+GIGG PCIKVA +QSK++D+KCTSVVLLS Sbjct 3801 VSTQEFRFMTANNLTAPRNSWEAMALNFKLIGIGGTPCIKVAAMQSKLTDLKCTSVVLLS 3860 Query 3846 VLQQLRVESSSKLWAQCVQLHNDILLAKDTTEAFEKMVSLLSVLLSMQGAVDINKLCEEM 3905 VLQQL +E++S+ WA CV+ HNDIL A D +EAFEK VSL + L++ G VD++ L ++ Sbjct 3861 VLQQLHLEANSRAWAFCVKCHNDILAATDPSEAFEKFVSLFATLMTFSGNVDLDALASDI 3920 Query 3906 LDNRATLQAIASEFSSLPSYAAYATAQEAYEQAVSNGD-SEVVLKKLKKSLNVAKSEFDH 3964 D + LQA SEFS L ++A AQ+AY++A+ +GD S VLK L+K++N+AK+ ++ Sbjct 3921 FDTPSVLQATLSEFSHLATFAELEAAQKAYQEAMDSGDTSPQVLKALQKAVNIAKNAYEK 3980 Query 3965 DAAMQRKLEKMADQAMTQMYKQARSEDKRAKVTSAMQTMLFTMLRKLDNDALNNIINNAR 4024 D A+ RKLE+MADQAMT MYKQAR+EDK+AK+ SAMQTMLF M++KLDND LN II+NAR Sbjct 3981 DKAVARKLERMADQAMTSMYKQARAEDKKAKIVSAMQTMLFGMIKKLDNDVLNGIISNAR 4040 Query 4025 DGCVPLNIIPLTTAAKLMVVVPDYGTYKNTCDGNTFTYASALWEIQQVVDADSKIVQLSE 4084 +GC+PL++IPL + KL VV+PD+ + + YA ALW+I + + D++IV+ S+ Sbjct 4041 NGCIPLSVIPLCASNKLRVVIPDFTVWNQVVTYPSLNYAGALWDITVINNVDNEIVKSSD 4100 Query 4085 INMDNSPNLAWPLIVTALRAN-SAVKLQNNELSPVALRQMSCAAGTTQTACTDDNALAYY 4143 + +D++ NL WPL++ RA+ SAVKLQNNE+ P L+ M +AG QT C + ++LAYY Sbjct 4101 V-VDSNENLTWPLVLECTRASTSAVKLQNNEIKPSGLKTMVVSAGQEQTNC-NTSSLAYY 4158 Query 4144 NNAKGGRFVLALLSDHQDLKWARFPKSDGTGTIYTELEPPCRFVTDTPKGPKVKYLYFIK 4203 +G + ++ALLSD+ LKWAR DG ++ EL+PPC+F+ PKGP+++YLYF+K Sbjct 4159 EPVQGRKMLMALLSDNAYLKWARVEGKDGFVSV--ELQPPCKFLIAGPKGPEIRYLYFVK 4216 Query 4204 GLNNLNRGMVLGSLAATVRLQAGNATEVPANSTVLSFCAFAVDPAKAYKDYLASGGQPIT 4263 LNNL+RG VLG +AATVRLQAG+ TE +NS+VLS F VDP KAY D++ +GG P+T Sbjct 4217 NLNNLHRGQVLGHIAATVRLQAGSNTEFASNSSVLSLVNFTVDPQKAYLDFVNAGGAPLT 4276 Query 4264 NCVKMLCTHTGTGQAITVTPEANMDQESFGGASCCLYCRCHIDHPNPKGFCDLKGKYVQI 4323 NCVKML TGTG AI+V PE+ DQE++GGAS CLYCR HI+HP+ G C KGK+VQI Sbjct 4277 NCVKMLTPKTGTGIAISVKPESTADQETYGGASVCLYCRAHIEHPDVSGVCKYKGKFVQI 4336 Query 4324 PTTCANDPVGFTLRNTVCTVCGMWKGYGCSCDQLREPMMQSADASTFLN 4372 P C DPVGF L NT C VC W GYGC+CD LR+ + + S FLN Sbjct 4337 PAQCVRDPVGFCLSNTPCNVCQYWIGYGCNCDSLRQAALPQSKDSNFLN 4385 Range 2: 123 to 1273 Score:300 bits(767), Expect:2e-79, Method:Compositional matrix adjust., Identities:319/1196(27%), Positives:515/1196(43%), Gaps:180/1196(15%) Query 101 GITLGVLVPHVGETPIAYRNVLLRKNGNKGAGGHSFGIDLKSY---DLGDELGTDPIEDY 157 G +G+ P+ E +N+LLRK G G F + + + D+ DP Y Sbjct 123 GKPIGMFFPYDIELVTGKQNILLRKYGRGGYHYTPFHYERDNTSCPEWMDDFEADPKGKY 182 Query 158 EQNWNTKHGSGALRELTRELNGGVVTRYVDNNFCGPDGYPLECIKDFLARAG-KSMCTLS 216 QN L ++L GG VT VD CG DG P+ +A+ G + + Sbjct 183 AQN------------LLKKLIGGDVTP-VDQYMCGVDGKPISAYAFLMAKDGITKLADVE 229 Query 217 EQLDYIESKRGVYCCREHEHEIVWFTERSEKSYEHQTPFEIKSAKKFDTFKGECPKFVFP 276 + G + + + +VW ER + Y Q+ F I S + D + P + F Sbjct 230 ADVAARADDEGFITLKNNLYRLVWHVERKDVPYPKQSIFTINSVVQKDGVENTPPHY-FT 288 Query 277 LNSKVKVIQPRVEKKKTEGFMGRIRSVYPVATPQECND---MHLSTLMKCNHCDEVSWQT 333 L K+ + PR + + + +Y + + ++ S ++C C SW T Sbjct 289 LGCKILTLTPRNKWSGVSDLSLKQKLLYTFYGKESLENPTYIYHSAFIECGSCGNDSWLT 348 Query 334 CDFLKATCEQCGTENLVCEGPT-TCGYLPTNAVVKMPCPACQDPEVGP--EHSVADYHNH 390 + ++ CG + + G + NA++ CP + +HSVA ++ Sbjct 349 GNAIQGFACGCGASYTANDVEVQSSGMIKPNALLCATCPFAKGDSCSSNCKHSVAQLVSY 408 Query 391 SNIETRLRKGGR--TKCFGGCVFSYVGCYNKRAYWVPRASA---NIGAN-HTGITGE-NV 443 + + + T FGG ++Y GC Y+VPRA + IG + TG TG N Sbjct 409 LSERCNVIADSKSFTLIFGGVAYAYFGCEEGTMYFVPRAKSVVSRIGDSIFTGCTGSWNK 468 Query 444 ETLNEDLLEILNRERVNINIVGDFRFNEEVAIILASFSASPSAFIETVKGLDYKSFKVIV 503 T ++ L + + ++N VG+F N+ V IL+ + + + +KG+ + Sbjct 469 VTQIANMF--LEQTQHSLNFVGEFVVNDVVLAILSGTTTNVDKIRQLLKGVTLDKLR--- 523 Query 504 ESCGNYKV--TNGKPVTGAWNIG----QQRSILTP---LCGFPSQAAGV------IRSIF 548 + +Y V T G + A N+G Q +I P L G V + + Sbjct 524 DYLADYDVAVTAGPFMDNAINVGGTGLQYAAITAPYVVLTGLGESFKKVATIPYKVCNSV 583 Query 549 SRTLDAANHSILDLQRAAVTTLD-GISEQSLRLVDAMVYTSDLLTNSVVVMAYVTGGLVQ 607 TL HS+L R +D G+S S L D + DL SV ++ L Sbjct 584 KDTLTYYAHSVL--YRVFPYDMDSGVSSFSELLFDCV----DL---SVASTYFLVRLLQD 634 Query 608 QTMQWLSNMLG---TAVDKLKPVFTWVEAKLSAGVEFLRDAWEILKFLITGVFDVIKGQI 664 +T ++S ++ TAV KL + T EA A FL D + + + + Sbjct 635 KTGDFMSTIITSCQTAVSKL--LDTCFEAT-EATFNFLLDLAGLFRIFLRNAYVYTSQGF 691 Query 665 QVATDNIKECVKIFLGVVNKALEMCLDQVTIAGTKLRALNLG--EVFIAQSRGLYRQCIR 722 V + VK L ++NK +++ +V+ AG+ + A+ E I S Y + Sbjct 692 VVVNGKVSTLVKQVLDLLNKGMQLLHTKVSWAGSNISAVIYSGRESLIFPSGTYYCVTTK 751 Query 723 GK---EQLQLLMPLK-APKEVTFLEGDAHDTVLTSE------EVVLKSGELEALETPIDS 772 K + L +++P + + K++ L+ + T ++ E V+ E + +P Sbjct 752 AKSVQQDLDVILPGEFSKKQLGLLQPTDNSTTVSVTVSSNMVETVVGQLEQTNMHSP--- 808 Query 773 FTSGAVVGTPVCINGLMLLELENKEQYCALSPGLL---ATNNVFRLKGGAPVKGVTFGED 829 +VG V I+ + + + ++ + A P A +FRLKGGAPVK V FG D Sbjct 809 ---DVIVGDYVIISEKLFVRSKEEDGF-AFYPACTNGHAVPTLFRLKGGAPVKKVAFGGD 864 Query 830 TVLEVQGYKNVKITFELDVRVDKVL-NEKCSVYTVESGTEVTEFACVVAEAV----VKTL 884 V EV ++V + + + +D +L + + V+ + EFA VV E V VK L Sbjct 865 QVHEVAAVRSVTVEYNIHAVLDTLLASSSLRTFVVDKSLSIEEFADVVKEQVSDLLVKLL 924 Query 885 Q--PVSDLLTPMGIDLDEWSVATFYLFDDAGEEKLSSRMYCSFYPPDEEEDCEEC----- 937 + P+ D DLD++ A Y F+ G+ SS M S +P + +E+C E Sbjct 925 RGMPIPDF------DLDDFIDAPCYCFNAEGDASWSSTMIFSLHPVECDEECSEVEASDL 978 Query 938 EDEEETCEHEYGTE----------DDY-----KGLPLEFGASTETPHVEEEE-------- 974 E+ E C E TE D++ + PL+ A T V+EE Sbjct 979 EEGESECISETSTEQVDVSHEISDDEWAAAVDEAFPLD-EAEDVTESVQEEAQPVEVPVE 1037 Query 975 -----------EEEDWLDDAIEAEPEPEPLPEEP----------VNQFVGYLKLTDNVAI 1013 +E + D +E P+ LP EP + + T +V + Sbjct 1038 DIAQVVIADTLQETPVVSDTVEVPPQVVKLPSEPQTIQPEVKEVAPVYEADTEQTQSVTV 1097 Query 1014 K-----------------------CI-----DIVKEAQSAKPTVIVNAANTHLKHGGGVA 1045 K C+ D ++ A+ +V+VNAANTHLKHGGG+A Sbjct 1098 KPKRLRKKRNVDPLSNFEHKVITECVTIVLGDAIQVAKCYGESVLVNAANTHLKHGGGIA 1157 Query 1046 GALNKATNGAMQNESDEYIRQNGPLTVGGSCLLSGHNLAEKCLHVVGPNLNAGEDVQLLK 1105 GA+N A+ GA+Q ESDEYI GPL VG S LL GH+LA+ LHVVGP+ A +DV LL Sbjct 1158 GAINAASKGAVQKESDEYILAKGPLQVGDSVLLQGHSLAKNILHVVGPDARAKQDVSLLS 1217 Query 1106 RAYENFNSQDVLLAPLLSAGIFGAKPLQSLKMCVEIVRTQVYLAVNDKSLYDQIVL 1161 + Y+ N+ +++ PL+SAGIFG KP S + +T+V + VN + +Y + + Sbjct 1218 KCYKAMNAYPLVVTPLVSAGIFGVKPAVSFDYLIREAKTRVLVVVNSQDVYKSLTI 1273 >RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Host translation inhibitor nsp1; Short=nsp1; AltName: Full=Leader protein; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p65 homolog; Contains: RecName: Full=Papain-like proteinase nsp3; Short=PL-PRO; AltName: Full=Non-structural protein 3; Short=nsp3; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; Contains: RecName: Full=3C-like proteinase nsp5; Short=3CL-PRO; Short=3CLp; AltName: Full=nsp5; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; Contains: RecName: Full=Viral protein genome-linked nsp9; AltName: Full=Non-structural protein 9; Short=nsp9; AltName: Full=RNA-capping enzyme subunit nsp9; AltName: Full=p12; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; Contains: RecName: Full=RNA-directed RNA polymerase nsp12; Short=Pol; Short=RdRp; AltName: Full=nsp12; Contains: RecName: Full=Helicase nsp13; Short=Hel; AltName: Full=nsp13; Contains: RecName: Full=Guanine-N7 methyltransferase nsp14; Short=ExoN; AltName: Full=nsp14; Contains: RecName: Full=Uridylate-specific endoribonuclease nsp15; AltName: Full=NendoU; AltName: Full=nsp15; Contains: RecName: Full=2'-O-methyltransferase nsp16; AltName: Full=nsp16 [Betacoronavirus England 1] Sequence ID: K9N7C7.1 Length: 7078 Range 1: 968 to 4384 Score:2197 bits(5693), Expect:0.0, Method:Compositional matrix adjust., Identities:1291/3476(37%), Positives:1934/3476(55%), Gaps:248/3476(7%) Query 1085 EKCLHVVGPNLNAGEDVQLLKRAYENFNSQDVLLAPLLSAGIFGAKPLQSLKMCVEIVRT 1144 E+C V +L GE + + + E + + +A + A PL + E V+ Sbjct 968 EECSEVEASDLEEGESECISETSTEQVDVSHEISDDEWAAAVDEAFPLDEAEDVTESVQE 1027 Query 1145 QVY-LAVNDKSLYDQIVLDYLDS---LKPKVESPNK----EEEPKLEEP--KAVQPVAE- 1193 + + V + + ++ D L + VE P + EP+ +P K V PV E Sbjct 1028 EAQPVEVPVEDIAQVVIADTLQETPVVSDTVEVPPQVVKLPSEPQTIQPEVKEVAPVYEA 1087 Query 1194 -----KPVDVKPK------------------IKACIDEVT-TTLEETKFLTNKLLLFA-- 1227 + V VKPK I C+ V ++ K +L+ A Sbjct 1088 DTEQTQSVTVKPKRLRKKRNVDPLSNFEHKVITECVTIVLGDAIQVAKCYGESVLVNAAN 1147 Query 1228 -------DINGKLYQDSQNMLRGEDMSFLEKDAPYIVGD-VITSG-----DITCVIIPAK 1274 I G + S+ ++ E ++ P VGD V+ G +I V+ P Sbjct 1148 THLKHGGGIAGAINAASKGAVQKESDEYILAKGPLQVGDSVLLQGHSLAKNILHVVGPDA 1207 Query 1275 KSGGTTEMLAR---ALKEVPVAEYITTYPGQGCAG--------YTLEEAKTALKKCKSAF 1323 ++ +L++ A+ P+ +T G G Y + EAKT + ++ Sbjct 1208 RAKQDVSLLSKCYKAMNAYPLV--VTPLVSAGIFGVKPAVSFDYLIREAKTRVLVVVNSQ 1265 Query 1324 YVLPSETPNEKEEVLGTVSWNLREMLAHAEETRKLMPICLDVRAIMATIQRKYKGIKVQE 1383 V S T + + L LR + A++ + +C D A ++ K + Sbjct 1266 DVYKSLTIVDIPQSLTFSYDGLRGAIRKAKDYGFTVFVCTDNSANTKVLRNKGVDYTKKF 1325 Query 1384 GIVDYGVRFFFYTSKEPVASIITKLNSLNEPLVTMPIGYVTHGLNLEEAARCMRSLKAPA 1443 VD GV+++ YTSK+ + I+ + N + +++MP+GYV+HGL+L +A +R + P Sbjct 1326 LTVD-GVQYYCYTSKDTLDDILQQANK-SVGIISMPLGYVSHGLDLIQAGSVVRRVNVPY 1383 Query 1444 VVSVSSPDAVTAYNGYLTSSSK--TPEEYFVETTSLAGSYRDWSYSGQRTELGVEFLKRG 1501 V +++ + L S P E F++ G Y W EL V+ L+ Sbjct 1384 VCLLANKEQ----EAILMSEDVKLNPSEDFIKHVRTNGGYNSWHLV--EGELLVQDLRLN 1437 Query 1502 -------------DKIVY---HTTGSPIEFHLDGEVLPLDKLKSLLSLREVK--TIKVFT 1543 D + Y ++T P E L ++ L R + TI+V Sbjct 1438 KLLHWSDQTICYKDSVFYVVKNSTAFPFE--------TLSACRAYLDSRTTQQLTIEVLV 1489 Query 1544 TVDNTNLHTHIVDMSMTYGQQFGPTYLDGADVTKIKPHVNHEGKTFFV---LPSDDTLRS 1600 TVD N T +++ TY Q G + +GAD++ P G + ++ L +D+T Sbjct 1490 TVDGVNFRTVVLNNKNTYRSQLGCVFFNGADISDTIPDEKQNGHSLYLADNLTADETKAL 1549 Query 1601 EAFEYYHTIDESFLGRYMSALNHTKKWKFPQVGGLTSIKWADNNCYLSSVLLALQQV-EV 1659 + E Y +D +FL R+ S KWK + S+K +DNNCYL++V++ L + ++ Sbjct 1550 K--ELYGPVDPTFLHRFYSLKAAVHKWKMVVCDKVRSLKLSDNNCYLNAVIMTLDLLKDI 1607 Query 1660 KFNAPALQEAYYRARAGDAANFCALILAYSNKTVGELGDVRETMTHLLQHANLE-SAKRV 1718 KF PALQ A+ + + GD+ +F ALI+AY N T G D + +L A L SA+ V Sbjct 1608 KFVIPALQHAFMKHKGGDSTDFIALIMAYGNCTFGAPDDASRLLHTVLAKAELCCSARMV 1667 Query 1719 LNVVCKHCGQKTTTLKGVEAVMYMGTLSYDELKTGVSIPCVCGRNATQYLVQQESSFVMM 1778 C CG K L+G++A Y+G + ++L+ ++ C CG + +V+ + ++++ Sbjct 1668 WREWCNVCGIKDVVLQGLKACCYVGVQTVEDLRARMTYVCQCGGERHRQIVEHTTPWLLL 1727 Query 1779 SAPPAEYKLQQGA---FLCANEYTG-NYQCGHYTHITAKETL-YRVDGAHLTKMSEYKGP 1833 S P E + F+ N + G GHY H K L + D ++K S++K Sbjct 1728 SGTPNEKLVTTSTAPDFVAFNVFQGIETAVGHYVHARLKGGLILKFDSGTVSKTSDWKCK 1787 Query 1834 VTDVFYKETSYTTAIKPVSYKLDGVTYTEIEPKLDGYYKKGNAYYT-EQPIDLVPTQPMP 1892 VTDV + Y++ V Y LDG TE++P L +Y K Y+T E P+ P + Sbjct 1788 VTDVLFPGQKYSSDCNVVRYSLDGNFRTEVDPDLSAFYVKDGKYFTSEPPVTYSPATILA 1847 Query 1893 NASFDNFKLTCSNTKFADD-----LNQMTGF--KKPASRELTVTFFPDLNGDVVAIDYRH 1945 + + N L S+ + D N + GF KP +++ T +F P +GDV+ ++ Sbjct 1848 GSVYTNSCLVSSDGQPGGDAISLSFNNLLGFDSSKPVTKKYTYSFLPKEDGDVLLAEFDT 1907 Query 1946 YSTSFKKGAKLVHKPILWHINQTTNKTTYKPNIWCLRCLWSTKPVDTSNSFEVLVVEDTQ 2005 Y +K GA KPILW + + K N LR ++ P++ N F L VE T Sbjct 1908 YDPIYKNGAMYKGKPILWVNKASYDTNLNKFNRASLRQIFDVAPIELENKFTPLSVESTP 1967 Query 2006 GMDNLACESQTTTSEEVVENPTV-----QKE--IIECD-VKTTEVVGNVILKPSEEGVKV 2057 VE PTV Q+E I++C + V NV + G V Sbjct 1968 -----------------VEPPTVDVVALQQEMTIVKCKGLNKPFVKDNVSFVADDSGTPV 2010 Query 2058 TQELGHEDLMAAYVE-ETSITIKKPNELSLALGLKTLAT---HGAAAINSVPWSKILAYV 2113 + L EDL YV+ + + + K N LS L L T+ + + AA S+ L + Sbjct 2011 VEYLSKEDLHTLYVDPKYQVIVLKDNVLSSMLRLHTVESGDINVVAASGSLTRKVKLLFR 2070 Query 2114 KPFLGQ--------TAVITSNCIKKCVQR------VFSNYMPYVITL-LFQLCTFTKST- 2157 F + +CIK V+ + + +V L + L F+ S Sbjct 2071 ASFYFKEFATRTFTATTAVGSCIKSVVRHLGVTKGILTGCFSFVKMLFMLPLAYFSDSKL 2130 Query 2158 -NSRIKASLPTT---IAKNSVKSVAKLCLDVCINYVKSPKFSKLFTIVMWLLLLSICLGS 2213 + +K S T + N VK +D+ ++ ++ + +++ L + L S Sbjct 2131 GTTEVKVSALKTAGVVTGNVVKQCCTAAVDLSMDKLRRVDWKSTLRLLLMLCTTMVLLSS 2190 Query 2214 LTYVTAVLGVCLSS--------------------LGVPSYCDGVRELY-INSSNVTTMDF 2252 + Y V LSS LG+ S CDG+ Y NS +V T F Sbjct 2191 V-YHLYVFNQVLSSDVMFEDAQGLKKFYKEVRAYLGISSACDGLASAYRANSFDVPT--F 2247 Query 2253 CQGYFP-CSVCLSGLDSLDSYPALETIQVTISSYKLDLTFLGLAAEWLLAYMLFTKFFYL 2311 C C+ CL DS+ YPAL+ +Q +S Y L++ +L A E LAYML+T F Sbjct 2248 CANRSAMCNWCLISQDSITHYPALKMVQTHLSHYVLNIDWLWFAFETGLAYMLYTSAFNW 2307 Query 2312 LGLSAIMQAFFGY------FASHFISNSWLMWFIISIVQMAPVSAMVRMYIFFASFYYVW 2365 L L+ + FF + S+ + S W I P++ +VRMY A + + Sbjct 2308 LLLAGTLHYFFAQTSIFVDWRSYNYAVSSAFWLFTHI----PMAGLVRMYNLLACLWLLR 2363 Query 2366 KSYVHIMDGCTSSTCMMCYKRNRATRVECTTIVNGVKRSFYVYANGGRGFCKAHNWNCLN 2425 K Y H+++GC + C++CYKRNR TRVE +T+V G KR+FY+ ANGG FC+ HNWNC++ Sbjct 2364 KFYQHVINGCKDTACLLCYKRNRLTRVEASTVVCGGKRTFYITANGGISFCRRHNWNCVD 2423 Query 2426 CDTFCAGSTFISDEVARDLSLQFKRPINPTDQSAYVVDSVTVKNGALHLYFDKAGQKTYE 2485 CDT G+TFI +EVA DL+ +RPIN TD+S Y VDSVTVK + + + GQ YE Sbjct 2424 CDTAGVGNTFICEEVANDLTTALRRPINATDRSHYYVDSVTVKETVVQFNYRRDGQPFYE 2483 Query 2486 RHPLSHFVNLDNLR----ANNTKGSLPINVIVFDGKSKCEESAAKSASVYYSQLMCQPIL 2541 R PL F NLD L+ T G N I++D + +ES A+SA VYYSQ++C+ IL Sbjct 2484 RFPLCAFTNLDKLKFKEVCKTTTGIPEYNFIIYDSSDRGQESLARSACVYYSQVLCKSIL 2543 Query 2542 LLDQALVSDVGDSTEVSVKMFDAYVDTFSATFSVPMEKLKALVATAHSELAKGVALDGVL 2601 L+D +LV+ VGDS+E++ KMFD++V++F + ++V +KL+ L++TA + +G VL Sbjct 2544 LVDSSLVTSVGDSSEIATKMFDSFVNSFVSLYNVTRDKLEKLISTARDGVRRGDNFHSVL 2603 Query 2602 STFVSAARQGV-VDTDVDTKDVIECLKLSHHSDIEVTGDSCNNFMLTYNKVENMTPRDLG 2660 +TF+ AAR V++DV+T ++++ ++ +H DI++T +S NN++ +Y K ++++ DLG Sbjct 2604 TTFIDAARGPAGVESDVETNEIVDSVQYAHKHDIQITNESYNNYVPSYVKPDSVSTSDLG 2663 Query 2661 ACIDCNARHINAQVAKSHNVSLVWNVKDYMSLSEQLRKQIRSAAKKNNIPFRLTCATTRQ 2720 + IDCNA +N V ++ N + +WN YM LS+ L++QIR A +K N+ FRLT + R Sbjct 2664 SLIDCNAASVNQIVLRNSNGACIWNAAAYMKLSDALKRQIRIACRKCNLAFRLTTSKLRA 2723 Query 2721 VVNVITTKISLKGGKVVS---TWFKLLLKVTL--------LCVLAALFCYVIMPVHSLSV 2769 N+++ + + K+V TWF L TL + L A+ Y+ +P S+ Sbjct 2724 NDNILSVRFT--ANKIVGGAPTWFNALRDFTLKGYVLATIIVFLCAVLMYLCLPTFSMVP 2781 Query 2770 HDGYTNEIIGYKAIQDGVTRDIVSTDDCFANKHAGFDSWFSQR-GGSYRNDKNCPVVAAI 2828 + Y + I+ +K + +G+ RD+ D CFANKH F W+ + GG Y N CP+ A+ Sbjct 2782 VEFYEDRILDFKVLDNGIIRDVNPDDKCFANKHRSFTQWYHEHVGGVYDNSITCPLTVAV 2841 Query 2829 ITREIGFIVPGLPGTVLRALNGDFLHFLPRVFSAVGNICYTPSKLIEYSDFATSACVLAA 2888 I G +P +P T L +N + F+ RVF+ G++CYTP I Y F+ S C+L + Sbjct 2842 IAGVAGARIPDVP-TTLAWVNNQIIFFVSRVFANTGSVCYTPIDEIPYKSFSDSGCILPS 2900 Query 2889 ECTIFKDAMGKPVPYCYDTNLLEGSISYSELRPDTRYVLMDGSI-IQFPNTYLEGSVRVV 2947 ECT+F+DA G+ PYC+D +L G+ +YS++RP RY L DG++ I+FP E ++R+ Sbjct 2901 ECTMFRDAEGRMTPYCHDPTVLPGAFAYSQMRPHVRYDLYDGNMFIKFPEVVFESTLRIT 2960 Query 2948 TTFDAEYCRHGTCERSEVGVCLSTSGRWVLNNEHYRALPGVFCGVDAMNLIANIFTPLVQ 3007 T +YCR G+CE ++ GVC++T+G W + N+H+ PGV+CG D ++++ + L Q Sbjct 2961 RTLSTQYCRFGSCEYAQEGVCITTNGSWAIFNDHHLNRPGVYCGSDFIDIVRRLAVSLFQ 3020 Query 3008 PVGALDVSASVVAGGIIAILVTCAAYYFMKFRRAFGEYNHVVAANALLFLMSFTILCLAP 3067 P+ ++ S+V G + +T YY K +RAF +Y + +++ +C Sbjct 3021 PITYFQLTTSLVLGIGLCAFLTLLFYYINKVKRAFADYTQCAVIAVVAAVLNSLCICFVA 3080 Query 3068 AYSFLPGVYSIFYLYLTFYFTNDVSFLAHLQWFAMFSPIVPFWITAIYVFCISLKHFHWF 3127 + Y+ Y Y TFYFTN+ +F+ H+ W+ MF PIVP W+T +Y + +HF W Sbjct 3081 SIPLCIVPYTALYYYATFYFTNEPAFIMHVSWYIMFGPIVPIWMTCVYTVAMCFRHFFWV 3140 Query 3128 FSNYLKKRV--MFNGVTFSTFEEAALCTFLLNKEMYLRLRSETLLPLTQYNRYLALYNKY 3185 + + KK V +G +F++AA F++NK+ Y LR+ L Y+R+L L+NKY Sbjct 3141 LAYFSKKHVEVFTDGKLNCSFQDAASNIFVINKDTYAALRNS--LTNDAYSRFLGLFNKY 3198 Query 3186 KYFSGALDTTSYREAACCHLAKALNDFSNSGADVLYQPPQTSITSAVLQSGFRKMAFPSG 3245 KYFSGA++T +YREAA CHLAKAL +S +G+D+LYQPP SITS VLQSG KM+ PSG Sbjct 3199 KYFSGAMETAAYREAAACHLAKALQTYSETGSDLLYQPPNCSITSGVLQSGLVKMSHPSG 3258 Query 3246 KVEGCMVQVTCGTTTLNGLWLDDTVYCPRHVVCTAEDMLNPNYDDLLIRKSNHSFLVQ-- 3303 VE CMVQVTCG+ TLNGLWLD+TV+CPRHV+C A+ + +PNYD LLI +NHSF VQ Sbjct 3259 DVEACMVQVTCGSMTLNGLWLDNTVWCPRHVMCPADQLSDPNYDALLISMTNHSFSVQKH 3318 Query 3304 -AGNVQLRVIGHSMQNCLLRLKVDTSNPKTPKYKFVRIQPGQTFSVLACYNGSPSGVYQC 3362 LRV+GH+MQ LL+L VD +NP TP Y F ++PG FSVLACYNG P+G + Sbjct 3319 IGAPANLRVVGHAMQGTLLKLTVDVANPSTPAYTFTTVKPGAAFSVLACYNGRPTGTFTV 3378 Query 3363 AMRPNHTIKGSFLNGSCGSVGFNIDYDCVSFCYMHHMELPTGVHAGTDLEGKFYGPFVDR 3422 MRPN+TIKGSFL GSCGSVG+ + ++FCYMH MEL G H G+ +G YG F+D+ Sbjct 3379 VMRPNYTIKGSFLCGSCGSVGYTKEGSVINFCYMHQMELANGTHTGSAFDGTMYGAFMDK 3438 Query 3423 QTAQAAGTDTTITLNVLAWLYAAVINGDRWFLNRFTTTLNDFNLVAMKYNY-EPLTQDHV 3481 Q Q TD ++NV+AWLYAA++NG WF+ T++ FN A+ + E + V Sbjct 3439 QVHQVQLTDKYCSVNVVAWLYAAILNGCAWFVKPNRTSVVSFNEWALANQFTEFVGTQSV 3498 Query 3482 DILGPLSAQTGIAVLDMCAALKELLQNGMNGRTILGSTILEDEFTPFDVVRQCSGVTFQG 3541 D+L + +TG+A+ + A+++L G G+ ILGST+LEDEFTP DV Q GV Q Sbjct 3499 DML---AVKTGVAIEQLLYAIQQLY-TGFQGKQILGSTMLEDEFTPEDVNMQIMGVVMQS 3554 Query 3542 KFKKIVKGTHHWMLLTFLTSLLILVQSTQWSLFFFVYENAFLPFALGIMAVAACAMLLVK 3601 +K+ GT HW+ T +++ +I++Q+T+++L+ +++E + A MLLVK Sbjct 3555 GVRKVTYGTAHWLFATLVSTYVIILQATKFTLWNYLFETIPTQLFPLLFVTMAFVMLLVK 3614 Query 3602 HKHAFLCLFLLPSLATVAYFNMVYMP----ASWVMRIMTWLELADTSLSGYRLKDCVMYA 3657 HKH FL LFLLP + Y N+VY P +S ++ + WL + + D +Y Sbjct 3615 HKHTFLTLFLLPVAICLTYANIVYEPTTPISSALIAVANWLAPTNAYMRTTH-TDIGVYI 3673 Query 3658 SALVLLILMTARTVYDDAARRVWTLMNVITLVYKVYYGNSLDQAISMWALVISVTSNYSG 3717 S ++L+++ R + L + + +Y G + I+ V ++TS+Y+ Sbjct 3674 SMSLVLVIVVKRLYNPSLSNFALALCSGVMWLYTYSIGEA-SSPIAYLVFVTTLTSDYTI 3732 Query 3718 VVTTIMFLARAIVFVCVEYYPLLFITGNTLQCIMLVYCFLGYCCCCYFGLFCLLNRYFRL 3777 V + LA+ + Y P L + ++ I+L+Y LG+ C CYFG+F LLN R Sbjct 3733 TVFVTVNLAKVCTYAIFAYSPQLTLVFPEVKMILLLYTCLGFMCTCYFGVFSLLNLKLRA 3792 Query 3778 TLGVYDYLVSTQEFRYMNSQGLLPPKSSIDAFKLNIKLLGIGGKPCIKVATVQSKMSDVK 3837 +GVYD+ VSTQEFR+M + L P++S +A LN KL+GIGG PCIKVA +QSK++D+K Sbjct 3793 PMGVYDFKVSTQEFRFMTANNLTAPRNSWEAMALNFKLIGIGGTPCIKVAAMQSKLTDLK 3852 Query 3838 CTSVVLLSVLQQLRVESSSKLWAQCVQLHNDILLAKDTTEAFEKMVSLLSVLLSMQGAVD 3897 CTSVVLLSVLQQL +E++S+ WA CV+ HNDIL A D +EAFEK VSL + L++ G VD Sbjct 3853 CTSVVLLSVLQQLHLEANSRAWAFCVKCHNDILAATDPSEAFEKFVSLFATLMTFSGNVD 3912 Query 3898 INKLCEEMLDNRATLQAIASEFSSLPSYAAYATAQEAYEQAVSNGD-SEVVLKKLKKSLN 3956 ++ L ++ D + LQA SEFS L ++A AQ+AY++A+ +GD S VLK L+K++N Sbjct 3913 LDALASDIFDTPSVLQATLSEFSHLATFAELEAAQKAYQEAMDSGDTSPQVLKALQKAVN 3972 Query 3957 VAKSEFDHDAAMQRKLEKMADQAMTQMYKQARSEDKRAKVTSAMQTMLFTMLRKLDNDAL 4016 +AK+ ++ D A+ RKLE+MADQAMT MYKQAR+EDK+AK+ SAMQTMLF M++KLDND L Sbjct 3973 IAKNAYEKDKAVARKLERMADQAMTSMYKQARAEDKKAKIVSAMQTMLFGMIKKLDNDVL 4032 Query 4017 NNIINNARDGCVPLNIIPLTTAAKLMVVVPDYGTYKNTCDGNTFTYASALWEIQQVVDAD 4076 N II+NAR+GC+PL++IPL + KL VV+PD+ + + YA ALW+I + + D Sbjct 4033 NGIISNARNGCIPLSVIPLCASNKLRVVIPDFTVWNQVVTYPSLNYAGALWDITVINNVD 4092 Query 4077 SKIVQLSEINMDNSPNLAWPLIVTALRAN-SAVKLQNNELSPVALRQMSCAAGTTQTACT 4135 ++IV+ S++ +D++ NL WPL++ RA+ SAVKLQNNE+ P L+ M +AG QT C Sbjct 4093 NEIVKSSDV-VDSNENLTWPLVLECTRASTSAVKLQNNEIKPSGLKTMVVSAGQEQTNC- 4150 Query 4136 DDNALAYYNNAKGGRFVLALLSDHQDLKWARFPKSDGTGTIYTELEPPCRFVTDTPKGPK 4195 + ++LAYY +G + ++ALLSD+ LKWAR DG ++ EL+PPC+F+ PKGP+ Sbjct 4151 NTSSLAYYEPVQGRKMLMALLSDNAYLKWARVEGKDGFVSV--ELQPPCKFLIAGPKGPE 4208 Query 4196 VKYLYFIKGLNNLNRGMVLGSLAATVRLQAGNATEVPANSTVLSFCAFAVDPAKAYKDYL 4255 ++YLYF+K LNNL+RG VLG +AATVRLQAG+ TE +NS+VLS F VDP KAY D++ Sbjct 4209 IRYLYFVKNLNNLHRGQVLGHIAATVRLQAGSNTEFASNSSVLSLVNFTVDPQKAYLDFV 4268 Query 4256 ASGGQPITNCVKMLCTHTGTGQAITVTPEANMDQESFGGASCCLYCRCHIDHPNPKGFCD 4315 +GG P+TNCVKML TGTG AI+V PE+ DQE++GGAS CLYCR HI+HP+ G C Sbjct 4269 NAGGAPLTNCVKMLTPKTGTGIAISVKPESTADQETYGGASVCLYCRAHIEHPDVSGVCK 4328 Query 4316 LKGKYVQIPTTCANDPVGFTLRNTVCTVCGMWKGYGCSCDQLREPMMQSADASTFL 4371 KGK+VQIP C DPVGF L NT C VC W GYGC+CD LR+ + + S FL Sbjct 4329 YKGKFVQIPAQCVRDPVGFCLSNTPCNVCQYWIGYGCNCDSLRQAALPQSKDSNFL 4384 Range 2: 123 to 1273 Score:300 bits(767), Expect:2e-79, Method:Compositional matrix adjust., Identities:314/1188(26%), Positives:510/1188(42%), Gaps:164/1188(13%) Query 101 GITLGVLVPHVGETPIAYRNVLLRKNGNKGAGGHSFGIDLKSY---DLGDELGTDPIEDY 157 G +G+ P+ E +N+LLRK G G F + + + D+ DP Y Sbjct 123 GKPIGMFFPYDIELVTGKQNILLRKYGRGGYHYTPFHYERDNTSCPEWMDDFEADPKGKY 182 Query 158 EQNWNTKHGSGALRELTRELNGGVVTRYVDNNFCGPDGYPLECIKDFLARAG-KSMCTLS 216 QN L ++L GG VT VD CG DG P+ +A+ G + + Sbjct 183 AQN------------LLKKLIGGDVTP-VDQYMCGVDGKPISAYAFLMAKDGITKLADVE 229 Query 217 EQLDYIESKRGVYCCREHEHEIVWFTERSEKSYEHQTPFEIKSAKKFDTFKGECPKFVFP 276 + G + + + +VW ER + Y Q+ F I S + D + P + F Sbjct 230 ADVAARADDEGFITLKNNLYRLVWHVERKDVPYPKQSIFTINSVVQKDGVENTPPHY-FT 288 Query 277 LNSKVKVIQPRVEKKKTEGFMGRIRSVYPVATPQECND---MHLSTLMKCNHCDEVSWQT 333 L K+ + PR + + + +Y + + ++ S ++C C SW T Sbjct 289 LGCKILTLTPRNKWSGVSDLSLKQKLLYTFYGKESLENPTYIYHSAFIECGSCGNDSWLT 348 Query 334 CDFLKATCEQCGTENLVCEGPT-TCGYLPTNAVVKMPCPACQDPEVGP--EHSVADYHNH 390 + ++ CG + + G + NA++ CP + +HSVA ++ Sbjct 349 GNAIQGFACGCGASYTANDVEVQSSGMIKPNALLCATCPFAKGDSCSSNCKHSVAQLVSY 408 Query 391 SNIETRLRKGGR--TKCFGGCVFSYVGCYNKRAYWVPRASA---NIGAN-HTGITGE-NV 443 + + + T FGG ++Y GC Y+VPRA + IG + TG TG N Sbjct 409 LSERCNVIADSKSFTLIFGGVAYAYFGCEEGTMYFVPRAKSVVSRIGDSIFTGCTGSWNK 468 Query 444 ETLNEDLLEILNRERVNINIVGDFRFNEEVAIILASFSASPSAFIETVKGLDYKSFKVIV 503 T ++ L + + ++N VG+F N+ V IL+ + + + +KG+ + + Sbjct 469 VTQIANMF--LEQTQHSLNFVGEFVVNDVVLAILSGTTTNVDKIRQLLKGVTLDKLRDYL 526 Query 504 ESCGNYKVTNGKPVTGAWNIG----QQRSILTP---LCGFPSQAAGV------IRSIFSR 550 + VT G + A N+G Q +I P L G V + + Sbjct 527 ADY-DVAVTAGPFMDNAINVGGTGLQYAAITAPYVVLTGLGESFKKVATIPYKVCNSVKD 585 Query 551 TLDAANHSILDLQRAAVTTLD-GISEQSLRLVDAMVYTSDLLTNSVVVMAYVTGGLVQQT 609 TL HS+L R +D G+S S L D + DL SV ++ L +T Sbjct 586 TLTYYAHSVL--YRVFPYDMDSGVSSFSELLFDCV----DL---SVASTYFLVRLLQDKT 636 Query 610 MQWLSNML---GTAVDKLKPVFTWVEAKLSAGVEFLRDAWEILKFLITGVFDVIKGQIQV 666 ++S ++ TAV KL + T EA A FL D + + + + V Sbjct 637 GDFMSTIITSCQTAVSKL--LDTCFEAT-EATFNFLLDLAGLFRIFLRNAYVYTSQGFVV 693 Query 667 ATDNIKECVKIFLGVVNKALEMCLDQVTIAGTKLRALNLG--EVFIAQSRGLYRQCIRGK 724 + VK L ++NK +++ +V+ AG+ + A+ E I S Y + K Sbjct 694 VNGKVSTLVKQVLDLLNKGMQLLHTKVSWAGSNISAVIYSGRESLIFPSGTYYCVTTKAK 753 Query 725 ---EQLQLLMPLK-APKEVTFLEGDAHDTVLTSE------EVVLKSGELEALETPIDSFT 774 + L +++P + + K++ L+ + T ++ E V+ E + +P Sbjct 754 SVQQDLDVILPGEFSKKQLGLLQPTDNSTTVSVTVSSNMVETVVGQLEQTNMHSP----- 808 Query 775 SGAVVGTPVCINGLMLLELENKEQYCALSPGLL---ATNNVFRLKGGAPVKGVTFGEDTV 831 +VG V I+ + + + ++ + A P A +FRLKGGAPVK V FG D V Sbjct 809 -DVIVGDYVIISEKLFVRSKEEDGF-AFYPACTNGHAVPTLFRLKGGAPVKKVAFGGDQV 866 Query 832 LEVQGYKNVKITFELDVRVDKVL-NEKCSVYTVESGTEVTEFACVVAEAVVKTLQPVSDL 890 EV ++V + + + +D +L + + V+ + EFA VV E V L + Sbjct 867 HEVAAVRSVTVEYNIHAVLDTLLASSSLRTFVVDKSLSIEEFADVVKEQVSDLLVKLLRG 926 Query 891 LTPMGIDLDEWSVATFYLFDDAGEEKLSSRMYCSFYPPDEEEDCEEC-----EDEEETCE 945 + DLD++ A Y F+ G+ SS M S +P + +E+C E E+ E C Sbjct 927 MPIPDFDLDDFIDAPCYCFNAEGDASWSSTMIFSLHPVECDEECSEVEASDLEEGESECI 986 Query 946 HEYGTE----------DDY-----KGLPLEFGASTETPHVEEEE---------------- 974 E TE D++ + PL+ A T V+EE Sbjct 987 SETSTEQVDVSHEISDDEWAAAVDEAFPLD-EAEDVTESVQEEAQPVEVPVEDIAQVVIA 1045 Query 975 ---EEEDWLDDAIEAEPEPEPLPEEP----------VNQFVGYLKLTDNVAIK------- 1014 +E + D +E P+ LP EP + + T +V +K Sbjct 1046 DTLQETPVVSDTVEVPPQVVKLPSEPQTIQPEVKEVAPVYEADTEQTQSVTVKPKRLRKK 1105 Query 1015 ----------------CI-----DIVKEAQSAKPTVIVNAANTHLKHGGGVAGALNKATN 1053 C+ D ++ A+ +V+VNAANTHLKHGGG+AGA+N A+ Sbjct 1106 RNVDPLSNFEHKVITECVTIVLGDAIQVAKCYGESVLVNAANTHLKHGGGIAGAINAASK 1165 Query 1054 GAMQNESDEYIRQNGPLTVGGSCLLSGHNLAEKCLHVVGPNLNAGEDVQLLKRAYENFNS 1113 GA+Q ESDEYI GPL VG S LL GH+LA+ LHVVGP+ A +DV LL + Y+ N+ Sbjct 1166 GAVQKESDEYILAKGPLQVGDSVLLQGHSLAKNILHVVGPDARAKQDVSLLSKCYKAMNA 1225 Query 1114 QDVLLAPLLSAGIFGAKPLQSLKMCVEIVRTQVYLAVNDKSLYDQIVL 1161 +++ PL+SAGIFG KP S + +T+V + VN + +Y + + Sbjct 1226 YPLVVTPLVSAGIFGVKPAVSFDYLIREAKTRVLVVVNSQDVYKSLTI 1273 >RecName: Full=Replicase polyprotein 1a; Short=pp1a; AltName: Full=ORF1a polyprotein; Contains: RecName: Full=Non-structural protein 1; Short=nsp1; AltName: Full=Leader protein; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p65 homolog; Contains: RecName: Full=Papain-like protease nsp3; Short=PL-PRO; AltName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=PL2-PRO; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; Contains: RecName: Full=3C-like proteinase nsp5; Short=3CL-PRO; Short=3CLp; AltName: Full=nsp5; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; Contains: RecName: Full=RNA-capping enzyme subunit nsp9; AltName: Full=Non-structural protein 9; Short=nsp9; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; Contains: RecName: Full=Non-structural protein 11; Short=nsp11 [Pipistrellus bat coronavirus HKU5] Sequence ID: P0C6T5.1 Length: 4481 Range 1: 1379 to 4475 Score:2174 bits(5634), Expect:0.0, Method:Compositional matrix adjust., Identities:1216/3121(39%), Positives:1800/3121(57%), Gaps:133/3121(4%) Query 1361 ICLDVRAIMATIQRKYKGIKVQEGIVDYGVRFFFYTSKEPVASIITKLNSLNEPLVTMPI 1420 IC D A ++ + + + VD GV+++ Y+SK+P+ IIT N+ + + MPI Sbjct 1379 ICTDQSANAKLLKGRGVDLTKKTQTVD-GVKYYLYSSKDPLTDIITAANAC-KGICAMPI 1436 Query 1421 GYVTHGLNLEEAARCMRSLKAPAVVSVSSPDAVTAYNGYLTSSSKTPEEYFVETTSLAGS 1480 GYVTHGL+L +A + ++ + P V ++S D V N + + +TPE+ F+ T G Sbjct 1437 GYVTHGLDLAQAGQQVKKITVPYVCLLASKDQVPILNSDV--AVQTPEQSFINTVIANGG 1494 Query 1481 YRDWSY-SGQRTELGVEF---LKRGDKIVYHTTGSPIEFHL-DGEV-LPLDKL---KSLL 1531 Y W +G+ GV + L D+ + + +F++ G++ LP D L ++ L Sbjct 1495 YHCWHLVTGELIVKGVSYRKLLNWSDQTICYADN---KFYVVKGQIALPFDSLEKCRTYL 1551 Query 1532 SLR--EVKTIKVFTTVDNTNLHTHIVDMSMTYGQQFGPTYLDGADVTKIKPHVNHEGKTF 1589 + R + K + V T+D N T +++ + TY Q G + G+D++ P G+ Sbjct 1552 TSRAAQQKNVDVLVTIDGVNFRTVVLNNTTTYRVQLGSVFYKGSDISDTIPTEKMSGEAV 1611 Query 1590 FVLPSDDTLRSEAF---EYYHTIDESFLGRYMSALNHTKKWKFPQVGGLTSIKWADNNCY 1646 ++ +D+ +E E Y T D +FL RY S L KKWK+ G+ S+K NNCY Sbjct 1612 YL--ADNLSEAEKAVLSEVYGTADTAFLHRYYSLLALVKKWKYTVHDGVKSLKLNSNNCY 1669 Query 1647 LSSVLLALQQV-EVKFNAPALQEAYYRARAGDAANFCALILAYSNKTVGELGDVRETMTH 1705 ++ +L L + E+KF PALQ AY + + GD+ F ALI+AY + T GE D + Sbjct 1670 VNVTMLMLDMLKEIKFIVPALQAAYLKHKGGDSTEFIALIMAYGDCTYGEPDDASRLLHT 1729 Query 1706 LLQHANLES-AKRVLNVVCKHCGQKTTTLKGVEAVMYMGTLSYDELKTGVSIPCVCGRNA 1764 +L A L + AK V C CG + TT G++A +Y+G S DEL C CG Sbjct 1730 ILSKAELTTQAKMVWRQWCNVCGVQDTTTTGLKACIYVGMNSLDELHATHEECCQCGDVR 1789 Query 1765 TQYLVQQESSFVMMSAPPAEYKLQQGAFLCANEYTG-------NYQCGHYTHITAKETL- 1816 + LV+ + ++++S + + +YT GHY H+ K+ L Sbjct 1790 KRQLVEHNAPWLLLSGLNEAKVMTPTSQSAGPDYTAFNVFQGVETSVGHYLHVRVKDNLL 1849 Query 1817 YRVDGAHLTKMSEYKGPVTDVFYKETSYTTAIKPVSYKLDGVTYTEIEPKLDGYYKKGNA 1876 Y+ D L+K S+ K +TDV+Y + Y+ V Y LDG T+ +++P L +Y K Sbjct 1850 YKYDSGSLSKTSDMKCKMTDVYYPKQRYSADCNVVVYSLDGNTWADVDPDLSAFYMKDGK 1909 Query 1877 YYTEQP-IDLVPTQPMPNASFDNFKL-----TCSNTKFADDLNQMTGF--KKPASRELTV 1928 Y+T++P I+ P + + + N L T + + N + GF KP S++LT Sbjct 1910 YFTKKPVIEYSPATILSGSVYTNSCLVGHDGTIGSDAISSSFNNLLGFDNSKPVSKKLTY 1969 Query 1929 TFFPDLNGDVVAIDYRHYSTSFKKGAKLVHKPILWHINQTTNKTTYKPNIWCLRCLWSTK 1988 +FFPD GDV+ +Y Y +K GA L KPILW N + K N LR ++ Sbjct 1970 SFFPDFEGDVILTEYSTYDPIYKNGAMLHGKPILWVNNSKFDSALNKFNRATLRQVYDIA 2029 Query 1989 PVDTSNSFEVLVVEDTQGMDNLAC--ESQTTTSEEVVENPTVQKEIIECD-VKTTEVVGN 2045 PV N + VL Q ++ A +++ + +V E+ + II+C +K V Sbjct 2030 PVTLENKYTVLQDNQIQQVEVEAPKEDAKPQSPVQVAEDIDNKLPIIKCKGLKKPFVKDG 2089 Query 2046 VILKPSEEGVKVTQELGHEDLMAAYVEET-SITIKKPNELSLALGLKTLATHG----AAA 2100 +GV V LG +DL A YV+ + + K N S + T+ AA+ Sbjct 2090 YSFVNDPQGVNVIDTLGIDDLRALYVDRNLRLIVLKENNWSALFNIHTVEKGDLSVIAAS 2149 Query 2101 INSVPWSKILAYVKPFLGQTAVITSN---CIKKCVQRVFSNYM----------PYVITLL 2147 + KIL Q A +T N + K + R+ N + + LL Sbjct 2150 GSITRRVKILLGASSLFAQFASVTVNVTTAMGKALGRMTRNVITNTGIIGQGFALLKMLL 2209 Query 2148 FQLCTFTKSTN-SRIKASLPT-----TIAKNSVKSVAKLCLDVCINYVKSPKFSKLFTIV 2201 TF KS N S +K + + N VK A DV + K + ++ Sbjct 2210 ILPFTFWKSKNQSTVKVEVGALRTAGIVTTNVVKQCASAAYDVLVVKFKRIDWKSTLRLL 2269 Query 2202 MWL-------------------LLLSICLGSLTYVTAVLGVCLSSLGVPSYCDGVRELYI 2242 + L + L + A S LG+ S CDG+ E Y Sbjct 2270 FLICTTGLLLSSLYYLFLFHQVLTSDVMLDGAEGMLATYRELRSYLGIHSLCDGMVEAYR 2329 Query 2243 NSSNVTTMDFCQGYFP-CSVCLSGLDSLDSYPALETIQVTISSYKLDLTFLGLAAEWLLA 2301 N S DFC C+ CL G DSL Y A + IQ ++SY +++ ++ E+ LA Sbjct 2330 NVS-YDVNDFCSNRSALCNWCLIGQDSLTRYSAFQMIQTHVTSYVINIDWVWFVMEFALA 2388 Query 2302 YMLFTKFFYLLGLSAIMQAFFGYFAS--HFISNSWLMWFIISIVQMAPVSAMVRMYIFFA 2359 Y+L+T F +L L Q FF Y + ++ S ++L+ V P+ +VR+Y F A Sbjct 2389 YVLYTSTFNVLLLVVSSQYFFSYTGAFVNWRSYNYLVSGYFFCVTHIPLLGLVRIYNFLA 2448 Query 2360 SFYYVWKSYVHIMDGCTSSTCMMCYKRNRATRVECTTIVNGVKRSFYVYANGGRGFCKAH 2419 +++ + Y H+++GC + C++CYKRNR TRVE +T+V G KR+FY+ ANGG FC H Sbjct 2449 CLWFLRRFYNHVINGCKDTACLLCYKRNRLTRVEASTVVCGSKRTFYIVANGGTSFCCRH 2508 Query 2420 NWNCLNCDTFCAGSTFISDEVARDLSLQFKRPINPTDQSAYVVDSVTVKNGALHLYFDKA 2479 NWNC++CDT G+TFI +EVA DL+ +R + PTD+S Y V+SVTVK+ + L++ + Sbjct 2509 NWNCVDCDTAGIGNTFICEEVANDLTTSLRRLVKPTDKSHYYVESVTVKDSVVQLHYSRE 2568 Query 2480 GQKTYERHPLSHFVNLDNLRAN---NTKGSLP-INVIVFDGKSKCEESAAKSASVYYSQL 2535 G YER+PL +F NLD L+ T +P N +++D + +E+ A+SA VYYSQ+ Sbjct 2569 GASCYERYPLCYFTNLDKLKFKEVCKTPTGIPEHNFLIYDSSDRGQENLARSACVYYSQV 2628 Query 2536 MCQPILLLDQALVSDVGDSTEVSVKMFDAYVDTFSATFSVPMEKLKALVATAHSELAKGV 2595 + +P+LL+D +V+ VGDS E++ KM D+YV++F + F V +KL LVATA + +G Sbjct 2629 LSKPMLLVDSNMVTTVGDSREIASKMLDSYVNSFISLFGVNRDKLDKLVATARDCVKRGD 2688 Query 2596 ALDGVLSTFVSAARQGV-VDTDVDTKDVIECLKLSHHSDIEVTGDSCNNFMLTYNKVENM 2654 V+ TF AAR V++DV+T +++ L+ ++ D+++T + NN++ +Y K +++ Sbjct 2689 DFQTVIKTFTDAARGPAGVESDVETSSIVDALQYAYKHDLQLTTEGFNNYVPSYIKPDSV 2748 Query 2655 TPRDLGACIDCNARHINAQVAKSHNVSLVWNVKDYMSLSEQLRKQIRSAAKKNNIPFRLT 2714 DLG ID NA +N ++ N + +WN DYM LS+ L++QIR A +K NIPFRLT Sbjct 2749 ATADLGCLIDLNAASVNQTSIRNANGACIWNSSDYMKLSDSLKRQIRIACRKCNIPFRLT 2808 Query 2715 CATTRQVVNVITTKIS---LKGG------KVVSTWFKLLLKVTLLCVLAALFCYVIMPVH 2765 + R N+++ K S L GG K+ +K VTL+ A+ Y+ +P Sbjct 2809 TSRLRSADNILSVKFSATKLSGGAPKWLLKLRDFTWKSYCVVTLVVFAMAVLSYLCLPAF 2868 Query 2766 SLSVHDGYTNEIIGYKAIQDGVTRDIVSTDDCFANKHAGFDSWFSQR-GGSYRNDKNCPV 2824 ++S + + I+ YK +++G+ RDI +D CFANK+ F WF++ GG + ND +CPV Sbjct 2869 NMSQVSFHEDRILTYKVVENGIIRDITPSDTCFANKYQSFSKWFNEHYGGLFNNDISCPV 2928 Query 2825 VAAIITREIGFIVPGLPGTVLRALNGDFLHFLPRVFSAVGNICYTPSKLIEYSDFATSAC 2884 A+I G VP LP V + + F+ RVF++ N+CYTP+ I Y F+ S C Sbjct 2929 TVAVIAGVAGARVPNLPANV-AWVGRQIVLFVSRVFASSNNVCYTPTAEIPYERFSDSGC 2987 Query 2885 VLAAECTIFKDAMGKPVPYCYDTNLLEGSISYSELRPDTRYVLMDGSI-IQFPNTYLEGS 2943 VLA+ECT+F+DA GK PYCYD +L G+ +Y +++P RY + D + I+FP E + Sbjct 2988 VLASECTLFRDAEGKINPYCYDPTVLPGASAYDQMKPHVRYDMYDSDMYIKFPEVVFEST 3047 Query 2944 VRVVTTFDAEYCRHGTCERSEVGVCLSTSGRWVLNNEHYRALPGVFCGVDAMNLIANIFT 3003 +R+ T YCR G+CE + GVC++T+G W + N+HY PGV+CG + +++ + Sbjct 3048 LRITKTLATRYCRFGSCEDANEGVCITTNGSWAIYNDHYANKPGVYCGDNYFDIVRRLGL 3107 Query 3004 PLVQPVGALDVSASVVAGGIIAILVTCAAYYFMKFRRAFGEYNHVVAANALLFLMSFTIL 3063 L QPV +S S+ G ++ I +T A YY K +RA +Y L++ L Sbjct 3108 SLFQPVTYFQLSTSLALGVMLCIFLTIAFYYVNKVKRALADYTQCAVVAVAAALLNSLCL 3167 Query 3064 CLAPAYSFLPGVYSIFYLYLTFYFTNDVSFLAHLQWFAMFSPIVPFWITAIYVFCISLKH 3123 C + L Y+ Y Y TFY T + +F+ H+ WF MF +VP W+ Y+ + L+H Sbjct 3168 CFVVSNPLLVLPYTALYYYATFYLTGEPAFVMHVSWFVMFGTVVPIWMVFAYIVGVCLRH 3227 Query 3124 FHWFFSNYLKKRV--MFNGVTFSTFEEAALCTFLLNKEMYLRLRSETLLPLTQYNRYLAL 3181 W + + KK V +G +F++AA F++NK+ Y+ LR+ + YNRYL++ Sbjct 3228 LLWVMAYFSKKHVEVFTDGKLNCSFQDAAANIFVINKDTYVALRNS--ITQDSYNRYLSM 3285 Query 3182 YNKYKYFSGALDTTSYREAACCHLAKALNDFSNSGADVLYQPPQTSITSAVLQSGFRKMA 3241 +NKYKY+SGA+DT SYREA+ HL KAL +S +G+DVL+QPP S+TS+VLQSG KMA Sbjct 3286 FNKYKYYSGAMDTASYREASAAHLCKALQVYSETGSDVLFQPPNCSVTSSVLQSGLVKMA 3345 Query 3242 FPSGKVEGCMVQVTCGTTTLNGLWLDDTVYCPRHVVCTAEDMLNPNYDDLLIRKSNHSFL 3301 PSG VE CMVQVTCG+ TLNGLWLD+ V+CPRHV+C A+ + +PNYD LL+ K+N SF+ Sbjct 3346 APSGVVENCMVQVTCGSMTLNGLWLDNYVWCPRHVMCPADQLSDPNYDALLVSKTNLSFI 3405 Query 3302 VQ---AGNVQLRVIGHSMQNCLLRLKVDTSNPKTPKYKFVRIQPGQTFSVLACYNGSPSG 3358 VQ LRV+GH+M LL+L V+++NP+TP Y F ++PG +FSVLACYNG P+G Sbjct 3406 VQKNVGAPANLRVVGHTMVGTLLKLTVESANPQTPAYTFTTVKPGASFSVLACYNGRPTG 3465 Query 3359 VYQCAMRPNHTIKGSFLNGSCGSVGFNIDYDCVSFCYMHHMELPTGVHAGTDLEGKFYGP 3418 V+ MR N TIKGSFL GSCGSVG+ + + ++FCYMH MEL G H G +G YG Sbjct 3466 VFMVNMRQNSTIKGSFLCGSCGSVGYTQEGNVINFCYMHQMELSNGTHTGCAFDGVMYGA 3525 Query 3419 FVDRQTAQAAGTDTTITLNVLAWLYAAVINGDRWFLNRFTTTLNDFNLVAMKYNY-EPLT 3477 F DRQ Q +D T+N++AWLYAA++NG WF+ T + FN AM + E + Sbjct 3526 FEDRQVHQVQLSDKYCTINIVAWLYAAILNGCNWFVKPNKTGIATFNEWAMSNQFTEFIG 3585 Query 3478 QDHVDILGPLSAQTGIAVLDMCAALKELLQNGMNGRTILGSTILEDEFTPFDVVRQCSGV 3537 VD+L + +TG++V + A+ + L G G+TILG+++LEDEFTP DV Q GV Sbjct 3586 TQSVDML---AHKTGVSVEQLLYAI-QTLHKGFQGKTILGNSMLEDEFTPDDVNMQVMGV 3641 Query 3538 TFQGKFKKIVKGTHHWMLLTFLTSLLILVQSTQWSLFFFVYENAFLPFALGIMAVAACAM 3597 Q K+I G HW+ T L + + +Q T+++++ +++E L ++ V AC M Sbjct 3642 VMQSGVKRISYGLVHWLFTTLLLAYVATLQLTKFTIWNYLFEVIPLQLTPLVLCVMACVM 3701 Query 3598 LLVKHKHAFLCLFLLPSLATVAYFNMVYMP----ASWVMRIMTWLELADTSLSGYRLKDC 3653 L VKHKH FL LFLLP+ + Y N+VY P +S ++ + WL A + D Sbjct 3702 LTVKHKHTFLTLFLLPTAICLTYANIVYEPQTPVSSALIAVANWLNPASVYMRTTH-TDL 3760 Query 3654 VMYASALVLLILMTARTVYDDAARRVWTLMNVITLVYKVYYGNSLDQAISMWALVISVTS 3713 +Y S L ++ R +A+ L + + Y Y ++ + ++TS Sbjct 3761 GVYLSLCFALAVVVRRLYRPNASNLALALGSAMVWFY-TYTTGDCSSPLTYLMFLTTLTS 3819 Query 3714 NYSGVVTTIMFLARAIVFVCVEYYPLLFITGNTLQCIMLVYCFLGYCCCCYFGLFCLLNR 3773 +Y+ V + +A+ V Y P ++ ++L+Y +GY C YFG+F LLN Sbjct 3820 DYTVTVFLAVNVAKFFARVVFLYAPHAGFIFPEVKLVLLMYLAVGYFCTVYFGVFSLLNL 3879 Query 3774 YFRLTLGVYDYLVSTQEFRYMNSQGLLPPKSSIDAFKLNIKLLGIGGKPCIKVATVQSKM 3833 R+ LGVYDY VSTQEFRY+ GL P++S +A +LN+KL+GIGG PCIK+A+VQSK+ Sbjct 3880 KLRVPLGVYDYTVSTQEFRYLTGNGLHAPRNSWEALRLNMKLIGIGGTPCIKIASVQSKL 3939 Query 3834 SDVKCTSVVLLSVLQQLRVESSSKLWAQCVQLHNDILLAKDTTEAFEKMVSLLSVLLSMQ 3893 +D+KCTSVVLLSVLQQL +E++SK WA CV+LHNDIL A D TEAF+ V L + L+S Sbjct 3940 TDLKCTSVVLLSVLQQLHLEANSKAWAHCVKLHNDILAATDPTEAFDNFVCLFATLMSFS 3999 Query 3894 GAVDINKLCEEMLDNRATLQAIASEFSSLPSYAAYATAQEAYEQAVSNGD-SEVVLKKLK 3952 VD+ L ++LD+ + LQA SEFS L SYA AQ +Y++A+++GD S VLK L+ Sbjct 4000 ANVDLEALASDLLDHPSVLQATLSEFSHLASYAELEAAQSSYQKALNSGDASPQVLKALQ 4059 Query 3953 KSLNVAKSEFDHDAAMQRKLEKMADQAMTQMYKQARSEDKRAKVTSAMQTMLFTMLRKLD 4012 K++N+AK+ ++ D A+ RKLE+MA+QAMT MYKQAR+EDK+AK+ SAMQTMLF M++KLD Sbjct 4060 KAVNIAKNAYEKDKAVARKLERMAEQAMTSMYKQARAEDKKAKIVSAMQTMLFGMIKKLD 4119 Query 4013 NDALNNIINNARDGCVPLNIIPLTTAAKLMVVVPDYGTYKNTCDGNTFTYASALWEIQQV 4072 ND LN +I+NAR+GCVPL+++PL + KL VV+PD + + +YA ALW+I + Sbjct 4120 NDVLNGVISNARNGCVPLSVVPLCASNKLRVVIPDITIWNKVVTWPSLSYAGALWDISLI 4179 Query 4073 VDADSKIVQLSEINMDNSPNLAWPLIVTALR-ANSAVKLQNNELSPVALRQMSCAAGTTQ 4131 + D ++V+ S++ N +L WPL++ R A+SAV LQNNE+ P L+ M +AG Sbjct 4180 NNVDGEVVKSSDVTETNE-SLTWPLVLECTRAASSAVTLQNNEIRPSGLKTMVVSAGIDH 4238 Query 4132 TACTDDNALAYYNNAKGGRFVLALLSDHQDLKWARFPKSDGTGTIYTELEPPCRFVTDTP 4191 C + ++LAYY +G + ++ +LS++ LKWA+ DG I EL+PPC+F+ P Sbjct 4239 ANC-NTSSLAYYEPVEGRKMLMGILSENAHLKWAKVEGRDGFVNI--ELQPPCKFLIAGP 4295 Query 4192 KGPKVKYLYFIKGLNNLNRGMVLGSLAATVRLQAGNATEVPANSTVLSFCAFAVDPAKAY 4251 KGP+V+YLYF+K LNNL+RG +LG +AATVRLQAG+ TE NS+VLS F+VDP KAY Sbjct 4296 KGPEVRYLYFVKNLNNLHRGQLLGHIAATVRLQAGSNTEFAINSSVLSAVTFSVDPGKAY 4355 Query 4252 KDYLASGGQPITNCVKMLCTHTGTGQAITVTPEANMDQESFGGASCCLYCRCHIDHPNPK 4311 D++ +GG P+TNCVKML TGTG A++V PEAN DQ+++GGAS CLYCR HI+HP+ Sbjct 4356 LDFVNAGGAPLTNCVKMLTPKTGTGIAVSVKPEANADQDTYGGASVCLYCRAHIEHPDVT 4415 Query 4312 GFCDLKGKYVQIPTTCANDPVGFTLRNTVCTVCGMWKGYGCSCDQLREPMMQSADASTFL 4371 G C KGK+VQ+P DPVGF L+NT C VC W G+GC+CD LR + + S FL Sbjct 4416 GVCKFKGKFVQVPLHI-RDPVGFCLQNTPCNVCQFWIGHGCNCDALRGTTIPQSKDSNFL 4474 Query 4372 N 4372 N Sbjct 4475 N 4475 Range 2: 28 to 988 Score:186 bits(473), Expect:3e-45, Method:Compositional matrix adjust., Identities:245/1001(24%), Positives:430/1001(42%), Gaps:100/1001(9%) Query 13 HVQLSLPVLQVRDVLVR---GFGDSVEEALSEAREHLKNGTCGLV--ELEKGVLPQLEQP 67 HV L + D++++ F D E A E L G+ L + KG + L P Sbjct 28 HVSLKASLCDAGDLVLKISPWFMDG-ESAYKHVSEQLSKGSKLLFVPQTLKGFIRHLPGP 86 Query 68 YVFIKRSDALSTNHGHKVVELVAELDGIQFGRSGITL-----GVLVPHVGETPIAYRNVL 122 V++ T +V +A + G G TL G+ P + L Sbjct 87 RVYLVERLTGGTYSDPFMVNQLAYQNAAGEGVIGTTLQGKRVGMFFPFDADLVTGEFQFL 146 Query 123 LRKNGNKGAGGHSFGIDLKSY------DLGDELGTDPIEDYEQNWNTKHGSGALRELTRE 176 LRK KG GG+ F Y DL D L DP Y Q+ L ++ Sbjct 147 LRK---KGFGGNRFRDAPWDYNWTPYSDLMDALEADPCGKYSQS------------LLKK 191 Query 177 LNGGVVTRYVDNNFCGPDGYPLECIKDFLARAG--KSMCTLSEQLDYIESKRGVYCCREH 234 L GG T +D CG +G P+ +A G K +E +S R + + Sbjct 192 LVGGDFTP-IDQYMCGKNGKPIAEFAALMASEGITKLADVEAEVKSRTDSDRYI-VFKNK 249 Query 235 EHEIVWFTERSEKSYEHQTPFEIKSAKKFDTFKGECPKFVFPLNSKVKVIQPRVEKKKTE 294 + IVW +R + +Y Q+ F + S + DT + + P+ F + S+++VI P + Sbjct 250 LYRIVWNVQRKDVAYSKQSAFTMNSIVQLDTME-DVPRHSFTIGSEIQVIAPSTAVQANG 308 Query 295 GFMGRIRSVYPVATPQ---ECNDMHLSTLMKCNHCDEVSWQTCDFLKATCEQCGTENLVC 351 + R +Y Q E N ++ S + C C + SW T + ++ CG Sbjct 309 HLNLKQRLLYAFYGKQAVSEPNYIYHSAYVDCTSCGKGSWLTGNAVQGFACDCGAHYCAN 368 Query 352 E-GPTTCGYLPTNAVVKMPCPACQDPEVGPEHSVADYHNHSNIETRLRKGGRT--KCFGG 408 + + G + NAV+ CP +D E +H++ + + + G+T +GG Sbjct 369 DVDLQSSGLVRKNAVLLTTCPCNKDGEC--KHTLPQLVSMMTDKCDVEVVGKTFILTYGG 426 Query 409 CVFSYVGCYNKRAYWVPRASA---NIG-ANHTGITG---ENVETLNEDLLEILNRERVNI 461 +++Y+GC +++PRA + IG A TG TG + ET N L R + I Sbjct 427 VIYAYMGCSGGTMHFIPRAKSCVSKIGDAIFTGCTGTWSKVCETANL----FLERAQHAI 482 Query 462 NIVGDFRFNEEVAIILASFSASPSAFIETVKGLDYKSFKVIVESCGNYKVTNGKPVTGAW 521 N V +F E V +L+ ++S + + ++ + + G + VT G + G Sbjct 483 NFVNEFVLTETVVALLSGTTSSIEELRDLCRNATFEKVRDYLTPRG-WIVTMGSYIEGVI 541 Query 522 NIGQQRSILTPLCGFPSQAAGVIRSIFSRTLDAANHSILDLQRAAVTTLDGISEQSLRLV 581 N+G +C A ++ S + + L + TLD ++ V Sbjct 542 NVGA-----AGVCNAALNAPFIVLSGLGESFKKVAATPWKLCSSLRETLDHYADSITYRV 596 Query 582 -------DAMVYTSDLLTNSVV--VMAYVTGGLVQQTMQWLSNMLGTAVDKLKPVFTWVE 632 D YT+ LL +V+ AY V + ++ L+N++ ++ F V+ Sbjct 597 FPYDIPCDVTDYTALLLDCAVLTGASAYFVARYVDEKVEQLTNLVFSSCQSAVAAF--VQ 654 Query 633 AKLS---AGVEFLRDAWEILKFLITGVFDVIKGQIQVATDNIKECVKIFLGVVNKALEMC 689 A +S A +F+ D + ++K + ++ V D + +K F+ +++KA+++ Sbjct 655 ACMSTYKATAKFISDMFTLIKVVSERLYVYTSVGFVVVGDYSSQLLKQFMHILSKAMQLL 714 Query 690 LDQVTIAGTKLRAL--NLGEVFIAQSRGLYRQCIRGK---EQLQLLMPLK-APKEVTFLE 743 V+ AG+KL ++ N + + S Y +G+ +Q L++P + K++ LE Sbjct 715 HTTVSWAGSKLPSVVYNGRDSLVFPSGTYYCVSTQGRSLQDQFDLVIPGDLSKKQIGILE 774 Query 744 GDAHDTVLTSE------EVVLKSGELEALETPIDSFTSGAVVGTPVCI-NGLMLLELENK 796 + T + + EVV+ G+LE P + VVG V I N + + +E+ Sbjct 775 PTPNSTTVDKKINTNVVEVVV--GQLE----PTKEHSPELVVGDYVIISNKIFVRSVEDS 828 Query 797 EQ--YCALSPGLLATNNVFRLKGGAPVKGVTFGEDTVLEVQGYKNVKITFELDVRVDKVL 854 E Y + G + +FRLKGGAP KGV FG + E+ ++V + +++ +D +L Sbjct 829 ETVFYPLCTDGKIVPT-LFRLKGGAPPKGVKFGGEQTKEITAVRSVSVDYDVHPVLDALL 887 Query 855 -NEKCSVYTVESGTEVTEFACVVAEAVVKTLQPVSDLLTPMGIDLDEWSVATFYLFDDAG 913 + + +TVE V +F VV + V++ L + G DL++++ Y+++ G Sbjct 888 AGSELATFTVEKDLPVKDFVDVVKDEVIELLSKLLRGYNVDGFDLEDFADTPCYVYNAEG 947 Query 914 EEKLSSRMYCSFYP-PDEEEDCEECEDEEETCEHEYGTEDD 953 + SS M S P + EE+C++ E+E E E+D Sbjct 948 DLAWSSTMTFSVNPVEEVEEECDDDYVEDEYLSEEMLVEED 988 Range 3: 1170 to 1347 Score:157 bits(397), Expect:2e-36, Method:Compositional matrix adjust., Identities:75/179(42%), Positives:118/179(65%), Gaps:1/179(0%) Query 981 DDAIEAEPEPEPLPEEPVNQFVGYLKLTDNVAIKCIDIVKEAQSAKPTVIVNAANTHLKH 1040 D + + + +P E P+ F ++ L ++V + D + A++ + ++VNAANTHLKH Sbjct 1170 DSSAKPQRVKKPKAENPLKNF-KHIVLNNDVTLVFGDAIAVARATEDCILVNAANTHLKH 1228 Query 1041 GGGVAGALNKATNGAMQNESDEYIRQNGPLTVGGSCLLSGHNLAEKCLHVVGPNLNAGED 1100 GGG+A A+++A+ G +Q ESD+Y+ GPL VG S LL GH LA LHVVGP+ A +D Sbjct 1229 GGGIAAAIDRASGGLVQAESDDYVNFYGPLNVGDSTLLKGHGLATGILHVVGPDARANQD 1288 Query 1101 VQLLKRAYENFNSQDVLLAPLLSAGIFGAKPLQSLKMCVEIVRTQVYLAVNDKSLYDQI 1159 +QLLKR Y+ FN ++++PL+SAGIF +P SL+ + +V T+ Y+ VN + +Y+ + Sbjct 1289 IQLLKRCYKAFNKYPLVVSPLISAGIFCVEPRVSLEYLLSVVHTKTYVVVNSEKVYNDL 1347 >RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Host translation inhibitor nsp1; Short=nsp1; AltName: Full=Leader protein; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p65 homolog; Contains: RecName: Full=Papain-like proteinase nsp3; Short=PL-PRO; AltName: Full=Non-structural protein 3; Short=nsp3; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; Contains: RecName: Full=3C-like proteinase nsp5; Short=3CL-PRO; Short=3CLp; AltName: Full=nsp5; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; Contains: RecName: Full=Viral protein genome-linked nsp9; AltName: Full=Non-structural protein 9; Short=nsp9; AltName: Full=RNA-capping enzyme subunit nsp9; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; Contains: RecName: Full=RNA-directed RNA polymerase nsp12; Short=Pol; Short=RdRp; AltName: Full=nsp12; Contains: RecName: Full=Helicase nsp13; Short=Hel; AltName: Full=nsp13; Contains: RecName: Full=Guanine-N7 methyltransferase nsp14; Short=ExoN; AltName: Full=nsp14; Contains: RecName: Full=Uridylate-specific endoribonuclease nsp15; AltName: Full=NendoU; AltName: Full=nsp15; Contains: RecName: Full=2'-O-methyltransferase nsp16; AltName: Full=nsp16 [Pipistrellus bat coronavirus HKU5] Sequence ID: P0C6W4.1 Length: 7182 Range 1: 1379 to 4475 Score:2169 bits(5621), Expect:0.0, Method:Compositional matrix adjust., Identities:1215/3120(39%), Positives:1798/3120(57%), Gaps:131/3120(4%) Query 1361 ICLDVRAIMATIQRKYKGIKVQEGIVDYGVRFFFYTSKEPVASIITKLNSLNEPLVTMPI 1420 IC D A ++ + + + VD GV+++ Y+SK+P+ IIT N+ + + MPI Sbjct 1379 ICTDQSANAKLLKGRGVDLTKKTQTVD-GVKYYLYSSKDPLTDIITAANAC-KGICAMPI 1436 Query 1421 GYVTHGLNLEEAARCMRSLKAPAVVSVSSPDAVTAYNGYLTSSSKTPEEYFVETTSLAGS 1480 GYVTHGL+L +A + ++ + P V ++S D V N + + +TPE+ F+ T G Sbjct 1437 GYVTHGLDLAQAGQQVKKITVPYVCLLASKDQVPILNSDV--AVQTPEQSFINTVIANGG 1494 Query 1481 YRDWSY-SGQRTELGVEF---LKRGDKIVYHTTGSPIEFHLDGEV-LPLDKL---KSLLS 1532 Y W +G+ GV + L D+ + + + + G++ LP D L ++ L+ Sbjct 1495 YHCWHLVTGELIVKGVSYRKLLNWSDQTICYADNK--FYVVKGQIALPFDSLEKCRTYLT 1552 Query 1533 LR--EVKTIKVFTTVDNTNLHTHIVDMSMTYGQQFGPTYLDGADVTKIKPHVNHEGKTFF 1590 R + K + V T+D N T +++ + TY Q G + G+D++ P G+ + Sbjct 1553 SRAAQQKNVDVLVTIDGVNFRTVVLNNTTTYRVQLGSVFYKGSDISDTIPTEKMSGEAVY 1612 Query 1591 VLPSDDTLRSEAF---EYYHTIDESFLGRYMSALNHTKKWKFPQVGGLTSIKWADNNCYL 1647 + +D+ +E E Y T D +FL RY S L KKWK+ G+ S+K NNCY+ Sbjct 1613 L--ADNLSEAEKAVLSEVYGTADTAFLHRYYSLLALVKKWKYTVHDGVKSLKLNSNNCYV 1670 Query 1648 SSVLLALQQV-EVKFNAPALQEAYYRARAGDAANFCALILAYSNKTVGELGDVRETMTHL 1706 + +L L + E+KF PALQ AY + + GD+ F ALI+AY + T GE D + + Sbjct 1671 NVTMLMLDMLKEIKFIVPALQAAYLKHKGGDSTEFIALIMAYGDCTYGEPDDASRLLHTI 1730 Query 1707 LQHANLES-AKRVLNVVCKHCGQKTTTLKGVEAVMYMGTLSYDELKTGVSIPCVCGRNAT 1765 L A L + AK V C CG + TT G++A +Y+G S DEL C CG Sbjct 1731 LSKAELTTQAKMVWRQWCNVCGVQDTTTTGLKACIYVGMNSLDELHATHEECCQCGDVRK 1790 Query 1766 QYLVQQESSFVMMSAPPAEYKLQQGAFLCANEYTG-------NYQCGHYTHITAKETL-Y 1817 + LV+ + ++++S + + +YT GHY H+ K+ L Y Sbjct 1791 RQLVEHNAPWLLLSGLNEAKVMTPTSQSAGPDYTAFNVFQGVETSVGHYLHVRVKDNLLY 1850 Query 1818 RVDGAHLTKMSEYKGPVTDVFYKETSYTTAIKPVSYKLDGVTYTEIEPKLDGYYKKGNAY 1877 + D L+K S+ K +TDV+Y + Y+ V Y LDG T+ +++P L +Y K Y Sbjct 1851 KYDSGSLSKTSDMKCKMTDVYYPKQRYSADCNVVVYSLDGNTWADVDPDLSAFYMKDGKY 1910 Query 1878 YTEQP-IDLVPTQPMPNASFDNFKL-----TCSNTKFADDLNQMTGF--KKPASRELTVT 1929 +T++P I+ P + + + N L T + + N + GF KP S++LT + Sbjct 1911 FTKKPVIEYSPATILSGSVYTNSCLVGHDGTIGSDAISSSFNNLLGFDNSKPVSKKLTYS 1970 Query 1930 FFPDLNGDVVAIDYRHYSTSFKKGAKLVHKPILWHINQTTNKTTYKPNIWCLRCLWSTKP 1989 FFPD GDV+ +Y Y +K GA L KPILW N + K N LR ++ P Sbjct 1971 FFPDFEGDVILTEYSTYDPIYKNGAMLHGKPILWVNNSKFDSALNKFNRATLRQVYDIAP 2030 Query 1990 VDTSNSFEVLVVEDTQGMDNLAC--ESQTTTSEEVVENPTVQKEIIECD-VKTTEVVGNV 2046 V N + VL Q ++ A +++ + +V E+ + II+C +K V Sbjct 2031 VTLENKYTVLQDNQIQQVEVEAPKEDAKPQSPVQVAEDIDNKLPIIKCKGLKKPFVKDGY 2090 Query 2047 ILKPSEEGVKVTQELGHEDLMAAYVEET-SITIKKPNELSLALGLKTLATHG----AAAI 2101 +GV V LG +DL A YV+ + + K N S + T+ AA+ Sbjct 2091 SFVNDPQGVNVIDTLGIDDLRALYVDRNLRLIVLKENNWSALFNIHTVEKGDLSVIAASG 2150 Query 2102 NSVPWSKILAYVKPFLGQTAVITSN---CIKKCVQRVFSNYM----------PYVITLLF 2148 + KIL Q A +T N + K + R+ N + + LL Sbjct 2151 SITRRVKILLGASSLFAQFASVTVNVTTAMGKALGRMTRNVITNTGIIGQGFALLKMLLI 2210 Query 2149 QLCTFTKSTN-SRIKASLPT-----TIAKNSVKSVAKLCLDVCINYVKSPKFSKLFTIVM 2202 TF KS N S +K + + N VK A DV + K + ++ Sbjct 2211 LPFTFWKSKNQSTVKVEVGALRTAGIVTTNVVKQCASAAYDVLVVKFKRIDWKSTLRLLF 2270 Query 2203 WL-------------------LLLSICLGSLTYVTAVLGVCLSSLGVPSYCDGVRELYIN 2243 + L + L + A S LG+ S CDG+ E Y N Sbjct 2271 LICTTGLLLSSLYYLFLFHQVLTSDVMLDGAEGMLATYRELRSYLGIHSLCDGMVEAYRN 2330 Query 2244 SSNVTTMDFCQGYFP-CSVCLSGLDSLDSYPALETIQVTISSYKLDLTFLGLAAEWLLAY 2302 S DFC C+ CL G DSL Y A + IQ ++SY +++ ++ E+ LAY Sbjct 2331 VS-YDVNDFCSNRSALCNWCLIGQDSLTRYSAFQMIQTHVTSYVINIDWVWFVMEFALAY 2389 Query 2303 MLFTKFFYLLGLSAIMQAFFGYFAS--HFISNSWLMWFIISIVQMAPVSAMVRMYIFFAS 2360 +L+T F +L L Q FF Y + ++ S ++L+ V P+ +VR+Y F A Sbjct 2390 VLYTSTFNVLLLVVSSQYFFSYTGAFVNWRSYNYLVSGYFFCVTHIPLLGLVRIYNFLAC 2449 Query 2361 FYYVWKSYVHIMDGCTSSTCMMCYKRNRATRVECTTIVNGVKRSFYVYANGGRGFCKAHN 2420 +++ + Y H+++GC + C++CYKRNR TRVE +T+V G KR+FY+ ANGG FC HN Sbjct 2450 LWFLRRFYNHVINGCKDTACLLCYKRNRLTRVEASTVVCGSKRTFYIVANGGTSFCCRHN 2509 Query 2421 WNCLNCDTFCAGSTFISDEVARDLSLQFKRPINPTDQSAYVVDSVTVKNGALHLYFDKAG 2480 WNC++CDT G+TFI +EVA DL+ +R + PTD+S Y V+SVTVK+ + L++ + G Sbjct 2510 WNCVDCDTAGIGNTFICEEVANDLTTSLRRLVKPTDKSHYYVESVTVKDSVVQLHYSREG 2569 Query 2481 QKTYERHPLSHFVNLDNLRAN---NTKGSLP-INVIVFDGKSKCEESAAKSASVYYSQLM 2536 YER+PL +F NLD L+ T +P N +++D + +E+ A+SA VYYSQ++ Sbjct 2570 ASCYERYPLCYFTNLDKLKFKEVCKTPTGIPEHNFLIYDSSDRGQENLARSACVYYSQVL 2629 Query 2537 CQPILLLDQALVSDVGDSTEVSVKMFDAYVDTFSATFSVPMEKLKALVATAHSELAKGVA 2596 +P+LL+D +V+ VGDS E++ KM D+YV++F + F V +KL LVATA + +G Sbjct 2630 SKPMLLVDSNMVTTVGDSREIASKMLDSYVNSFISLFGVNRDKLDKLVATARDCVKRGDD 2689 Query 2597 LDGVLSTFVSAARQGV-VDTDVDTKDVIECLKLSHHSDIEVTGDSCNNFMLTYNKVENMT 2655 V+ TF AAR V++DV+T +++ L+ ++ D+++T + NN++ +Y K +++ Sbjct 2690 FQTVIKTFTDAARGPAGVESDVETSSIVDALQYAYKHDLQLTTEGFNNYVPSYIKPDSVA 2749 Query 2656 PRDLGACIDCNARHINAQVAKSHNVSLVWNVKDYMSLSEQLRKQIRSAAKKNNIPFRLTC 2715 DLG ID NA +N ++ N + +WN DYM LS+ L++QIR A +K NIPFRLT Sbjct 2750 TADLGCLIDLNAASVNQTSIRNANGACIWNSSDYMKLSDSLKRQIRIACRKCNIPFRLTT 2809 Query 2716 ATTRQVVNVITTKIS---LKGG------KVVSTWFKLLLKVTLLCVLAALFCYVIMPVHS 2766 + R N+++ K S L GG K+ +K VTL+ A+ Y+ +P + Sbjct 2810 SRLRSADNILSVKFSATKLSGGAPKWLLKLRDFTWKSYCVVTLVVFAMAVLSYLCLPAFN 2869 Query 2767 LSVHDGYTNEIIGYKAIQDGVTRDIVSTDDCFANKHAGFDSWFSQR-GGSYRNDKNCPVV 2825 +S + + I+ YK +++G+ RDI +D CFANK+ F WF++ GG + ND +CPV Sbjct 2870 MSQVSFHEDRILTYKVVENGIIRDITPSDTCFANKYQSFSKWFNEHYGGLFNNDISCPVT 2929 Query 2826 AAIITREIGFIVPGLPGTVLRALNGDFLHFLPRVFSAVGNICYTPSKLIEYSDFATSACV 2885 A+I G VP LP V + + F+ RVF++ N+CYTP+ I Y F+ S CV Sbjct 2930 VAVIAGVAGARVPNLPANV-AWVGRQIVLFVSRVFASSNNVCYTPTAEIPYERFSDSGCV 2988 Query 2886 LAAECTIFKDAMGKPVPYCYDTNLLEGSISYSELRPDTRYVLMDGSI-IQFPNTYLEGSV 2944 LA+ECT+F+DA GK PYCYD +L G+ +Y +++P RY + D + I+FP E ++ Sbjct 2989 LASECTLFRDAEGKINPYCYDPTVLPGASAYDQMKPHVRYDMYDSDMYIKFPEVVFESTL 3048 Query 2945 RVVTTFDAEYCRHGTCERSEVGVCLSTSGRWVLNNEHYRALPGVFCGVDAMNLIANIFTP 3004 R+ T YCR G+CE + GVC++T+G W + N+HY PGV+CG + +++ + Sbjct 3049 RITKTLATRYCRFGSCEDANEGVCITTNGSWAIYNDHYANKPGVYCGDNYFDIVRRLGLS 3108 Query 3005 LVQPVGALDVSASVVAGGIIAILVTCAAYYFMKFRRAFGEYNHVVAANALLFLMSFTILC 3064 L QPV +S S+ G ++ I +T A YY K +RA +Y L++ LC Sbjct 3109 LFQPVTYFQLSTSLALGVMLCIFLTIAFYYVNKVKRALADYTQCAVVAVAAALLNSLCLC 3168 Query 3065 LAPAYSFLPGVYSIFYLYLTFYFTNDVSFLAHLQWFAMFSPIVPFWITAIYVFCISLKHF 3124 + L Y+ Y Y TFY T + +F+ H+ WF MF +VP W+ Y+ + L+H Sbjct 3169 FVVSNPLLVLPYTALYYYATFYLTGEPAFVMHVSWFVMFGTVVPIWMVFAYIVGVCLRHL 3228 Query 3125 HWFFSNYLKKRV--MFNGVTFSTFEEAALCTFLLNKEMYLRLRSETLLPLTQYNRYLALY 3182 W + + KK V +G +F++AA F++NK+ Y+ LR+ + YNRYL+++ Sbjct 3229 LWVMAYFSKKHVEVFTDGKLNCSFQDAAANIFVINKDTYVALRNS--ITQDSYNRYLSMF 3286 Query 3183 NKYKYFSGALDTTSYREAACCHLAKALNDFSNSGADVLYQPPQTSITSAVLQSGFRKMAF 3242 NKYKY+SGA+DT SYREA+ HL KAL +S +G+DVL+QPP S+TS+VLQSG KMA Sbjct 3287 NKYKYYSGAMDTASYREASAAHLCKALQVYSETGSDVLFQPPNCSVTSSVLQSGLVKMAA 3346 Query 3243 PSGKVEGCMVQVTCGTTTLNGLWLDDTVYCPRHVVCTAEDMLNPNYDDLLIRKSNHSFLV 3302 PSG VE CMVQVTCG+ TLNGLWLD+ V+CPRHV+C A+ + +PNYD LL+ K+N SF+V Sbjct 3347 PSGVVENCMVQVTCGSMTLNGLWLDNYVWCPRHVMCPADQLSDPNYDALLVSKTNLSFIV 3406 Query 3303 Q---AGNVQLRVIGHSMQNCLLRLKVDTSNPKTPKYKFVRIQPGQTFSVLACYNGSPSGV 3359 Q LRV+GH+M LL+L V+++NP+TP Y F ++PG +FSVLACYNG P+GV Sbjct 3407 QKNVGAPANLRVVGHTMVGTLLKLTVESANPQTPAYTFTTVKPGASFSVLACYNGRPTGV 3466 Query 3360 YQCAMRPNHTIKGSFLNGSCGSVGFNIDYDCVSFCYMHHMELPTGVHAGTDLEGKFYGPF 3419 + MR N TIKGSFL GSCGSVG+ + + ++FCYMH MEL G H G +G YG F Sbjct 3467 FMVNMRQNSTIKGSFLCGSCGSVGYTQEGNVINFCYMHQMELSNGTHTGCAFDGVMYGAF 3526 Query 3420 VDRQTAQAAGTDTTITLNVLAWLYAAVINGDRWFLNRFTTTLNDFNLVAMKYNY-EPLTQ 3478 DRQ Q +D T+N++AWLYAA++NG WF+ T + FN AM + E + Sbjct 3527 EDRQVHQVQLSDKYCTINIVAWLYAAILNGCNWFVKPNKTGIATFNEWAMSNQFTEFIGT 3586 Query 3479 DHVDILGPLSAQTGIAVLDMCAALKELLQNGMNGRTILGSTILEDEFTPFDVVRQCSGVT 3538 VD+L + +TG++V + A+ + L G G+TILG+++LEDEFTP DV Q GV Sbjct 3587 QSVDML---AHKTGVSVEQLLYAI-QTLHKGFQGKTILGNSMLEDEFTPDDVNMQVMGVV 3642 Query 3539 FQGKFKKIVKGTHHWMLLTFLTSLLILVQSTQWSLFFFVYENAFLPFALGIMAVAACAML 3598 Q K+I G HW+ T L + + +Q T+++++ +++E L ++ V AC ML Sbjct 3643 MQSGVKRISYGLVHWLFTTLLLAYVATLQLTKFTIWNYLFEVIPLQLTPLVLCVMACVML 3702 Query 3599 LVKHKHAFLCLFLLPSLATVAYFNMVYMP----ASWVMRIMTWLELADTSLSGYRLKDCV 3654 VKHKH FL LFLLP+ + Y N+VY P +S ++ + WL A + D Sbjct 3703 TVKHKHTFLTLFLLPTAICLTYANIVYEPQTPVSSALIAVANWLNPASVYMRTTH-TDLG 3761 Query 3655 MYASALVLLILMTARTVYDDAARRVWTLMNVITLVYKVYYGNSLDQAISMWALVISVTSN 3714 +Y S L ++ R +A+ L + + Y Y ++ + ++TS+ Sbjct 3762 VYLSLCFALAVVVRRLYRPNASNLALALGSAMVWFY-TYTTGDCSSPLTYLMFLTTLTSD 3820 Query 3715 YSGVVTTIMFLARAIVFVCVEYYPLLFITGNTLQCIMLVYCFLGYCCCCYFGLFCLLNRY 3774 Y+ V + +A+ V Y P ++ ++L+Y +GY C YFG+F LLN Sbjct 3821 YTVTVFLAVNVAKFFARVVFLYAPHAGFIFPEVKLVLLMYLAVGYFCTVYFGVFSLLNLK 3880 Query 3775 FRLTLGVYDYLVSTQEFRYMNSQGLLPPKSSIDAFKLNIKLLGIGGKPCIKVATVQSKMS 3834 R+ LGVYDY VSTQEFRY+ GL P++S +A +LN+KL+GIGG PCIK+A+VQSK++ Sbjct 3881 LRVPLGVYDYTVSTQEFRYLTGNGLHAPRNSWEALRLNMKLIGIGGTPCIKIASVQSKLT 3940 Query 3835 DVKCTSVVLLSVLQQLRVESSSKLWAQCVQLHNDILLAKDTTEAFEKMVSLLSVLLSMQG 3894 D+KCTSVVLLSVLQQL +E++SK WA CV+LHNDIL A D TEAF+ V L + L+S Sbjct 3941 DLKCTSVVLLSVLQQLHLEANSKAWAHCVKLHNDILAATDPTEAFDNFVCLFATLMSFSA 4000 Query 3895 AVDINKLCEEMLDNRATLQAIASEFSSLPSYAAYATAQEAYEQAVSNGD-SEVVLKKLKK 3953 VD+ L ++LD+ + LQA SEFS L SYA AQ +Y++A+++GD S VLK L+K Sbjct 4001 NVDLEALASDLLDHPSVLQATLSEFSHLASYAELEAAQSSYQKALNSGDASPQVLKALQK 4060 Query 3954 SLNVAKSEFDHDAAMQRKLEKMADQAMTQMYKQARSEDKRAKVTSAMQTMLFTMLRKLDN 4013 ++N+AK+ ++ D A+ RKLE+MA+QAMT MYKQAR+EDK+AK+ SAMQTMLF M++KLDN Sbjct 4061 AVNIAKNAYEKDKAVARKLERMAEQAMTSMYKQARAEDKKAKIVSAMQTMLFGMIKKLDN 4120 Query 4014 DALNNIINNARDGCVPLNIIPLTTAAKLMVVVPDYGTYKNTCDGNTFTYASALWEIQQVV 4073 D LN +I+NAR+GCVPL+++PL + KL VV+PD + + +YA ALW+I + Sbjct 4121 DVLNGVISNARNGCVPLSVVPLCASNKLRVVIPDITIWNKVVTWPSLSYAGALWDISLIN 4180 Query 4074 DADSKIVQLSEINMDNSPNLAWPLIVTALR-ANSAVKLQNNELSPVALRQMSCAAGTTQT 4132 + D ++V+ S++ N +L WPL++ R A+SAV LQNNE+ P L+ M +AG Sbjct 4181 NVDGEVVKSSDVTETNE-SLTWPLVLECTRAASSAVTLQNNEIRPSGLKTMVVSAGIDHA 4239 Query 4133 ACTDDNALAYYNNAKGGRFVLALLSDHQDLKWARFPKSDGTGTIYTELEPPCRFVTDTPK 4192 C + ++LAYY +G + ++ +LS++ LKWA+ DG I EL+PPC+F+ PK Sbjct 4240 NC-NTSSLAYYEPVEGRKMLMGILSENAHLKWAKVEGRDGFVNI--ELQPPCKFLIAGPK 4296 Query 4193 GPKVKYLYFIKGLNNLNRGMVLGSLAATVRLQAGNATEVPANSTVLSFCAFAVDPAKAYK 4252 GP+V+YLYF+K LNNL+RG +LG +AATVRLQAG+ TE NS+VLS F+VDP KAY Sbjct 4297 GPEVRYLYFVKNLNNLHRGQLLGHIAATVRLQAGSNTEFAINSSVLSAVTFSVDPGKAYL 4356 Query 4253 DYLASGGQPITNCVKMLCTHTGTGQAITVTPEANMDQESFGGASCCLYCRCHIDHPNPKG 4312 D++ +GG P+TNCVKML TGTG A++V PEAN DQ+++GGAS CLYCR HI+HP+ G Sbjct 4357 DFVNAGGAPLTNCVKMLTPKTGTGIAVSVKPEANADQDTYGGASVCLYCRAHIEHPDVTG 4416 Query 4313 FCDLKGKYVQIPTTCANDPVGFTLRNTVCTVCGMWKGYGCSCDQLREPMMQSADASTFLN 4372 C KGK+VQ+P DPVGF L+NT C VC W G+GC+CD LR + + S FLN Sbjct 4417 VCKFKGKFVQVPLH-IRDPVGFCLQNTPCNVCQFWIGHGCNCDALRGTTIPQSKDSNFLN 4475 Range 2: 28 to 988 Score:186 bits(473), Expect:3e-45, Method:Compositional matrix adjust., Identities:245/1001(24%), Positives:430/1001(42%), Gaps:100/1001(9%) Query 13 HVQLSLPVLQVRDVLVR---GFGDSVEEALSEAREHLKNGTCGLV--ELEKGVLPQLEQP 67 HV L + D++++ F D E A E L G+ L + KG + L P Sbjct 28 HVSLKASLCDAGDLVLKISPWFMDG-ESAYKHVSEQLSKGSKLLFVPQTLKGFIRHLPGP 86 Query 68 YVFIKRSDALSTNHGHKVVELVAELDGIQFGRSGITL-----GVLVPHVGETPIAYRNVL 122 V++ T +V +A + G G TL G+ P + L Sbjct 87 RVYLVERLTGGTYSDPFMVNQLAYQNAAGEGVIGTTLQGKRVGMFFPFDADLVTGEFQFL 146 Query 123 LRKNGNKGAGGHSFGIDLKSY------DLGDELGTDPIEDYEQNWNTKHGSGALRELTRE 176 LRK KG GG+ F Y DL D L DP Y Q+ L ++ Sbjct 147 LRK---KGFGGNRFRDAPWDYNWTPYSDLMDALEADPCGKYSQS------------LLKK 191 Query 177 LNGGVVTRYVDNNFCGPDGYPLECIKDFLARAG--KSMCTLSEQLDYIESKRGVYCCREH 234 L GG T +D CG +G P+ +A G K +E +S R + + Sbjct 192 LVGGDFTP-IDQYMCGKNGKPIAEFAALMASEGITKLADVEAEVKSRTDSDRYI-VFKNK 249 Query 235 EHEIVWFTERSEKSYEHQTPFEIKSAKKFDTFKGECPKFVFPLNSKVKVIQPRVEKKKTE 294 + IVW +R + +Y Q+ F + S + DT + + P+ F + S+++VI P + Sbjct 250 LYRIVWNVQRKDVAYSKQSAFTMNSIVQLDTME-DVPRHSFTIGSEIQVIAPSTAVQANG 308 Query 295 GFMGRIRSVYPVATPQ---ECNDMHLSTLMKCNHCDEVSWQTCDFLKATCEQCGTENLVC 351 + R +Y Q E N ++ S + C C + SW T + ++ CG Sbjct 309 HLNLKQRLLYAFYGKQAVSEPNYIYHSAYVDCTSCGKGSWLTGNAVQGFACDCGAHYCAN 368 Query 352 E-GPTTCGYLPTNAVVKMPCPACQDPEVGPEHSVADYHNHSNIETRLRKGGRT--KCFGG 408 + + G + NAV+ CP +D E +H++ + + + G+T +GG Sbjct 369 DVDLQSSGLVRKNAVLLTTCPCNKDGEC--KHTLPQLVSMMTDKCDVEVVGKTFILTYGG 426 Query 409 CVFSYVGCYNKRAYWVPRASA---NIG-ANHTGITG---ENVETLNEDLLEILNRERVNI 461 +++Y+GC +++PRA + IG A TG TG + ET N L R + I Sbjct 427 VIYAYMGCSGGTMHFIPRAKSCVSKIGDAIFTGCTGTWSKVCETANL----FLERAQHAI 482 Query 462 NIVGDFRFNEEVAIILASFSASPSAFIETVKGLDYKSFKVIVESCGNYKVTNGKPVTGAW 521 N V +F E V +L+ ++S + + ++ + + G + VT G + G Sbjct 483 NFVNEFVLTETVVALLSGTTSSIEELRDLCRNATFEKVRDYLTPRG-WIVTMGSYIEGVI 541 Query 522 NIGQQRSILTPLCGFPSQAAGVIRSIFSRTLDAANHSILDLQRAAVTTLDGISEQSLRLV 581 N+G +C A ++ S + + L + TLD ++ V Sbjct 542 NVGA-----AGVCNAALNAPFIVLSGLGESFKKVAATPWKLCSSLRETLDHYADSITYRV 596 Query 582 -------DAMVYTSDLLTNSVV--VMAYVTGGLVQQTMQWLSNMLGTAVDKLKPVFTWVE 632 D YT+ LL +V+ AY V + ++ L+N++ ++ F V+ Sbjct 597 FPYDIPCDVTDYTALLLDCAVLTGASAYFVARYVDEKVEQLTNLVFSSCQSAVAAF--VQ 654 Query 633 AKLS---AGVEFLRDAWEILKFLITGVFDVIKGQIQVATDNIKECVKIFLGVVNKALEMC 689 A +S A +F+ D + ++K + ++ V D + +K F+ +++KA+++ Sbjct 655 ACMSTYKATAKFISDMFTLIKVVSERLYVYTSVGFVVVGDYSSQLLKQFMHILSKAMQLL 714 Query 690 LDQVTIAGTKLRAL--NLGEVFIAQSRGLYRQCIRGK---EQLQLLMPLK-APKEVTFLE 743 V+ AG+KL ++ N + + S Y +G+ +Q L++P + K++ LE Sbjct 715 HTTVSWAGSKLPSVVYNGRDSLVFPSGTYYCVSTQGRSLQDQFDLVIPGDLSKKQIGILE 774 Query 744 GDAHDTVLTSE------EVVLKSGELEALETPIDSFTSGAVVGTPVCI-NGLMLLELENK 796 + T + + EVV+ G+LE P + VVG V I N + + +E+ Sbjct 775 PTPNSTTVDKKINTNVVEVVV--GQLE----PTKEHSPELVVGDYVIISNKIFVRSVEDS 828 Query 797 EQ--YCALSPGLLATNNVFRLKGGAPVKGVTFGEDTVLEVQGYKNVKITFELDVRVDKVL 854 E Y + G + +FRLKGGAP KGV FG + E+ ++V + +++ +D +L Sbjct 829 ETVFYPLCTDGKIVPT-LFRLKGGAPPKGVKFGGEQTKEITAVRSVSVDYDVHPVLDALL 887 Query 855 -NEKCSVYTVESGTEVTEFACVVAEAVVKTLQPVSDLLTPMGIDLDEWSVATFYLFDDAG 913 + + +TVE V +F VV + V++ L + G DL++++ Y+++ G Sbjct 888 AGSELATFTVEKDLPVKDFVDVVKDEVIELLSKLLRGYNVDGFDLEDFADTPCYVYNAEG 947 Query 914 EEKLSSRMYCSFYP-PDEEEDCEECEDEEETCEHEYGTEDD 953 + SS M S P + EE+C++ E+E E E+D Sbjct 948 DLAWSSTMTFSVNPVEEVEEECDDDYVEDEYLSEEMLVEED 988 Range 3: 1170 to 1347 Score:157 bits(397), Expect:2e-36, Method:Compositional matrix adjust., Identities:75/179(42%), Positives:118/179(65%), Gaps:1/179(0%) Query 981 DDAIEAEPEPEPLPEEPVNQFVGYLKLTDNVAIKCIDIVKEAQSAKPTVIVNAANTHLKH 1040 D + + + +P E P+ F ++ L ++V + D + A++ + ++VNAANTHLKH Sbjct 1170 DSSAKPQRVKKPKAENPLKNF-KHIVLNNDVTLVFGDAIAVARATEDCILVNAANTHLKH 1228 Query 1041 GGGVAGALNKATNGAMQNESDEYIRQNGPLTVGGSCLLSGHNLAEKCLHVVGPNLNAGED 1100 GGG+A A+++A+ G +Q ESD+Y+ GPL VG S LL GH LA LHVVGP+ A +D Sbjct 1229 GGGIAAAIDRASGGLVQAESDDYVNFYGPLNVGDSTLLKGHGLATGILHVVGPDARANQD 1288 Query 1101 VQLLKRAYENFNSQDVLLAPLLSAGIFGAKPLQSLKMCVEIVRTQVYLAVNDKSLYDQI 1159 +QLLKR Y+ FN ++++PL+SAGIF +P SL+ + +V T+ Y+ VN + +Y+ + Sbjct 1289 IQLLKRCYKAFNKYPLVVSPLISAGIFCVEPRVSLEYLLSVVHTKTYVVVNSEKVYNDL 1347 >RecName: Full=Replicase polyprotein 1a; Short=pp1a; AltName: Full=ORF1a polyprotein; Contains: RecName: Full=Non-structural protein 1; Short=nsp1; AltName: Full=p28; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p65; Contains: RecName: Full=Papain-like protease nsp3; Short=PL-PRO; AltName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=PL1-PRO/PL2-PRO; AltName: Full=PL1/PL2; AltName: Full=PL2-PRO; AltName: Full=Papain-like proteinases 1/2; AltName: Full=p210; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; AltName: Full=Peptide HD2; AltName: Full=p44; Contains: RecName: Full=3C-like proteinase nsp5; Short=3CL-PRO; Short=3CLp; AltName: Full=M-PRO; AltName: Full=nsp5; AltName: Full=p27; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; AltName: Full=p10; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; AltName: Full=p22; Contains: RecName: Full=RNA-capping enzyme subunit nsp9; AltName: Full=Non-structural protein 9; Short=nsp9; AltName: Full=p12; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; AltName: Full=p15; Contains: RecName: Full=Non-structural protein 11; Short=nsp11 [Bovine respiratory coronavirus (strain 98TXSF-110-LUN)] Sequence ID: P0C6T9.1 Length: 4383 Range 1: 1565 to 4381 Score:1890 bits(4897), Expect:0.0, Method:Compositional matrix adjust., Identities:1096/2888(38%), Positives:1630/2888(56%), Gaps:121/2888(4%) Query 1539 IKVFTTVDNTNLHTHIVDMSMTYGQQFGPTYLDGADVTKIKPHVNHEGKTFFVLPSDDTL 1598 + + TVD N V + +G+ G + DG +VTK K +N++GK FF D L Sbjct 1565 VDILLTVDGVNFTNRFVPVGENFGKSLGNVFCDGVNVTKHKCDINYKGKVFFQF---DNL 1621 Query 1599 RSE---AFEYYHTIDESFLGRYMSALNHTKKWKFPQVGGLTSIKWADNNCYLSSVLLALQ 1655 SE A D+ L Y + L + KW+ G + K A+NNC+++ L LQ Sbjct 1622 SSEDLKAVRSSFNFDQKELLAYYNMLVNCSKWQVVFNGKYFTFKQANNNCFVNVSCLMLQ 1681 Query 1656 QVEVKFNAPALQEAYYRARAGDAANFCALILAYSNKTVGELGDVRETMTHLLQHANLESA 1715 + +KF QEA+ R+G A F +L+LA G+ D R+ + + +L A Sbjct 1682 SLNLKFKIVQWQEAWLEFRSGRPARFVSLVLAKGGFKFGDPADSRDFLRVVFSQVDLTGA 1741 Query 1716 KRVLNVVCKHCGQKTTTLKGVEAVMYMGTLSYDELKTGVSIPCVCGRNATQYLVQQESSF 1775 + CK CG K GV+AVM+ GTLS ++L+ G ++ C CG+ + V+ + F Sbjct 1742 ICDFEIACK-CGVKQEQRTGVDAVMHFGTLSREDLEIGYTVDCSCGKKLI-HCVRFDVPF 1799 Query 1776 VMMSAPPAEYKLQQGAFLCANEYTGNYQCGHYTHITAKETLYRVDGAHLTKMSEYKGPVT 1835 ++ S PA KL +G AN + G+ + GHY H+ +++ D +++ K+++ G ++ Sbjct 1800 LICSNTPASVKLPKGVG-SANIFKGD-KVGHYVHVKCEQSYQLYDASNVKKVTDVTGNLS 1857 Query 1836 DVFY-KETSYTTAIKPVSYKLDGVTYTEIEPKLDGYYKKGNAYYTEQPIDL-VPTQPMPN 1893 D Y K T +Y LD V E +P L YY G YYT++ I T + Sbjct 1858 DCLYLKNLKQTFKSVLTTYYLDDVKKIEYKPDLSQYYCDGGKYYTQRIIKAQFKTFEKVD 1917 Query 1894 ASFDNFKLTCSNTKFADDLNQMTGFKKPAS-RELTVTFFPDLNGDVVAIDYRHYSTSFKK 1952 + NFKL D LN GF E VT +P GDVV Y +++ Sbjct 1918 GVYTNFKLI--GHTICDILNAKLGFDSSKEFVEYKVTEWPTATGDVVLATDDLYVKRYER 1975 Query 1953 GAKLVHKPILW--HINQTTNKTTYKPNIWCLRCLWSTKPVDTSNSFEVLVVEDTQGMDNL 2010 G KP++W H + N TY ++ + N F+VL V+D ++ Sbjct 1976 GCITFGKPVIWLSHEQASLNSLTY----------FNRPLLVDENKFDVLKVDDVDDGGDI 2025 Query 2011 ACESQTTTSEEV--VENPTVQKEIIECDVKTTEVVGNVILKPSEEGVKVTQELGHEDLMA 2068 + ES S+E+ ++ V+K +V +VI+ +K + L D+ Sbjct 2026 S-ESDAKESKEINIIKLSGVKKPF--------KVEDSVIVNDDTSEIKYVKSLSIVDVYD 2076 Query 2069 AYVEETSITIKKPNELSLALGLKTLA--THGAAAINSVPWSKI-LAYVKPFLGQTAVITS 2125 ++ ++ N+LS+A+ + T+ + S+P + L +KP + Sbjct 2077 MWLTGCRYVVRTANDLSMAVNVPTIRKFIKFGMTLVSIPIDLLNLREIKPVFNVVKAV-R 2135 Query 2126 NCIKKCVQRVFSNYMPYVITLLF--------QLCTFTKSTNSRIKASLPTTIAKNSVKS- 2176 N I C N++ ++ LLF +T S++ L KN+ + Sbjct 2136 NKISACF-----NFIKWLFVLLFGWIKISADNKVIYTTEVASKLTCKLVALAFKNAFLTF 2190 Query 2177 ----VAK-LCLDVCINYVKSPKFSKLFTIVMWLLLLSICLGSL-TYVTAVLGVCLSSLGV 2230 VA+ C+ I + F+ ++ V++ +G L T+V + S+ + Sbjct 2191 KWSVVARGACIIATIFLLW---FNFIYANVIFSDFYLPKIGFLPTFVGKIAQWIKSTFSL 2247 Query 2231 PSYCDGVRELYINSSNVTTMDFCQGYFPCSVCLSGLDSLDSYPALETIQVTISSYK-LDL 2289 + CD LY +C G C CL+G D LD+Y A++ +Q +D Sbjct 2248 VTICD----LYSIQDVGFKNQYCNGSIACQFCLAGFDMLDNYKAIDVVQYEADRRAFVDY 2303 Query 2290 T-FLGLAAEWLLAYMLFTKFFYLLGLSAIMQAFFGYFASHFISNS--WLMWFIISIVQMA 2346 T L + E +++Y L+T +FY L +Q + F+ ++ W + ++S+ M Sbjct 2304 TGVLKIVIELIVSYALYTAWFYPLFALISIQILTTWLPELFMLSTLHWSVRLLVSLANML 2363 Query 2347 PVSAMVRMYIFFASFYYVWKSYVHIMDGCTSSTCMMCYKRNRATRVECTTIVNGVKRSFY 2406 P +R YI ASF ++ + H+ GC+ C+ CYKRNR+ RV+C+TIV G+ R + Sbjct 2364 PAHVFMRFYIIIASFIKLFSLFRHVAYGCSKPGCLFCYKRNRSLRVKCSTIVGGMIRYYD 2423 Query 2407 VYANGGRGFCKAHNWNCLNCDTFCAGSTFISDEVARDLSLQFKRPINPTDQSAYVVDSVT 2466 V ANGG GFC H WNC++CD++ G+TFI+ E A DLS + KRPI PTD + + V V Sbjct 2424 VMANGGTGFCSKHQWNCIDCDSYKPGNTFITVEAALDLSKELKRPIQPTDVAYHTVTDVK 2483 Query 2467 VKNGALHLYFDKAGQKTYERHPLSHFVNLDNLRANNTKGSLPINVIVFDGKSKCEESAAK 2526 + L++++ GQ+TY+ S FV+ NL + KG ++V+V + + +++ Sbjct 2484 QVGCYMRLFYERDGQRTYDDVNASLFVDYSNLLHSKVKGVPNMHVVVVENDA--DKANFL 2541 Query 2527 SASVYYSQLMCQPILLLDQALVSDVGDSTEVSVKMFDAYVDTFSATFSVPMEKLKALVAT 2586 +A+V+Y+Q + +PIL++D+ L++ T V+ MFD YVDTF + F V + L AL+AT Sbjct 2542 NAAVFYAQSLFRPILMVDKNLITTANTGTSVTETMFDVYVDTFLSMFDVDKKSLNALIAT 2601 Query 2587 AHSELAKGVALDGVLSTFVSAARQGV-VDTDVDTKDVIECLKLSHHSDIEVTGDSCNNFM 2645 AHS + +G + VL TF+S AR+ +D+DVDTK + + + + + +E+T +SCNN + Sbjct 2602 AHSSIKQGTQICKVLDTFLSCARKSCSIDSDVDTKCLADSVMSAVSAGLELTDESCNNLV 2661 Query 2646 LTYNKVENMTPRDLGACIDCNARHINAQVAKSHNVSLVWNVKDYMSLSEQLRKQIRSAAK 2705 TY K +N+ DLG I +A+H+ VAK VS +W+V + LS + +++ A Sbjct 2662 PTYLKGDNIVAADLGVLIQNSAKHVQGNVAKIAGVSCIWSVDAFNQLSSDFQHKLKKACC 2721 Query 2706 KNNIPFRLTCATTRQVVNVITTKISLKGGKVVSTWFKLLLKVTLLCVLAALFCYVIMPVH 2765 K + +LT V+V+TT SLKGG V S + + ++L+C + L+C +MP + Sbjct 2722 KTGLKLKLTYNKQMANVSVLTTPFSLKGGAVFSYFVYVCFLLSLVCFIG-LWC--LMPTY 2778 Query 2766 SLSVHDGYTNEIIGYKAIQDGVTRDIVSTDDCFANKHAGFDSWFSQRGG--SYRNDKNCP 2823 ++ D YK + +GV RD+ D CFANK FD W+ G Y N CP Sbjct 2779 TVHKSDFQLPVYTSYKVLDNGVIRDVSVEDVCFANKFEQFDQWYESTFGLSYYSNSMACP 2838 Query 2824 VVAAIITREIGFIVPGLPGTVLRALNGDFLHFLPRVFSAVGNICYTPSKLIEYSDFATSA 2883 +V A++ +++G V +P VLR LHF+ SA G CYTP I YS+F S Sbjct 2839 IVVAVVDQDLGSTVFNVPTKVLR-YGYHVLHFITHALSADGVQCYTPHSQISYSNFYASG 2897 Query 2884 CVLAAECTIFKDAMGKPVPYCYDTNLLEGSISYSELRPDTRYVLMDG-SIIQFPNTYLEG 2942 CVL++ CT+F A G P PYCY L++ + YS L P RY L + I+FP EG Sbjct 2898 CVLSSACTMFAMADGSPQPYCYTEGLMQNASLYSSLVPHVRYNLANAKGFIRFPEVLREG 2957 Query 2943 SVRVVTTFDAEYCRHGTCERSEVGVCLSTSGRWVLNNEHYRALPGVFCGVDAMNLIANIF 3002 VR+V T YCR G CE ++ G+C + +G WVLNN++YR+LPG FCG D +LI +F Sbjct 2958 LVRIVRTRSMSYCRVGLCEEADEGICFNFNGSWVLNNDYYRSLPGTFCGRDVFDLIYQLF 3017 Query 3003 TPLVQPVGALDVSASVVAGGIIAILVTCAAYYFMKFRRAFGEYNHVVAANALLFLMSFTI 3062 L QPV L ++AS +AG I+A++V YY +K +RAFG+Y +V N +++ ++F + Sbjct 3018 KGLAQPVDFLALTASSIAGAILAVIVVLVFYYLIKLKRAFGDYTSIVFVNVIVWCVNFMM 3077 Query 3063 LCLAPAYSFLPGVYSIFYLYLTFYFTNDVSFLAHLQWFAMFSPIVPFWITAIYVFCISLK 3122 L + Y L VY+I Y Y T YF +++S + HLQW M+ I+P W +Y+ + Sbjct 3078 LFVFQVYPTLSCVYAICYFYATLYFPSEISVIMHLQWLVMYGTIMPLWFCLLYISVVVSN 3137 Query 3123 HFHWFFSNYLKKRVMFNGVTFSTFEEAALCTFLLNKEMYLRLRSETLLPLTQYNRYLALY 3182 H W F+ +R+ + + TFEE AL TF++ K+ Y +L++ L +NRYL+LY Sbjct 3138 HAFWVFA--YCRRLGTSVRSDGTFEEMALTTFMITKDSYCKLKNS--LSDVAFNRYLSLY 3193 Query 3183 NKYKYFSGALDTTSYREAACCHLAKALNDFSNS-GADVLYQPPQTSITSAVLQSGFRKMA 3241 NKY+Y+SG +DT +YREAAC LAKA++ F+N+ G+DVLYQPP S++++ LQSG KM Sbjct 3194 NKYRYYSGKMDTAAYREAACSQLAKAMDTFTNNNGSDVLYQPPTASVSTSFLQSGIVKMV 3253 Query 3242 FPSGKVEGCMVQVTCGTTTLNGLWLDDTVYCPRHVVCTAEDMLNPNYDDLLIRKSNHSFL 3301 P+ KVE C+V VT G TLNGLWLDD VYCPRHV+C+A DM NP+Y +LL R ++ F Sbjct 3254 NPTSKVEPCIVSVTYGNMTLNGLWLDDKVYCPRHVICSASDMTNPDYTNLLCRVTSSDFT 3313 Query 3302 VQAGNVQLRVIGHSMQNCLLRLKVDTSNPKTPKYKFVRIQPGQTFSVLACYNGSPSGVYQ 3361 V + L V+ + MQ C+L L V N +TPKY F ++PG+TF+VLA YNG P G + Sbjct 3314 VLFDRLSLTVMSYQMQGCMLVLTVTLQNSRTPKYTFGVVKPGETFTVLAAYNGKPQGAFH 3373 Query 3362 CAMRPNHTIKGSFLNGSCGSVGFNIDYDCVSFCYMHHMELPTGVHAGTDLEGKFYGPFVD 3421 MR ++TIKGSFL GSCGSVG+ + DCV F YMH +EL TG H GTD G FYGP+ D Sbjct 3374 VTMRSSYTIKGSFLCGSCGSVGYVLMGDCVKFVYMHQLELSTGCHTGTDFNGDFYGPYKD 3433 Query 3422 RQTAQAAGTDTTITLNVLAWLYAAVINGDRWFLNRFTTTLNDFNLVAMKYNYEPLTQDHV 3481 Q Q D ++N +AWLYAA++N WF+ ++ DFN+ A+ + + D V Sbjct 3434 AQVVQLPVQDYIQSVNFVAWLYAAILNNCNWFVQSDKCSVEDFNVWALSNGFSQVKSDLV 3493 Query 3482 DILGPLSAQTGIAVLDMCAALKELLQNGMNGRTILGSTILEDEFTPFDVVRQCSGVTFQG 3541 + L++ TG+++ + AA+K L+NG GR I+GS EDE TP DV +Q +G+ Q Sbjct 3494 --IDALASMTGVSLETLLAAIKR-LKNGFQGRQIMGSCSFEDELTPSDVYQQLAGIKLQS 3550 Query 3542 KFKKIVKGTHHWMLL-TFLTSLLILVQSTQWSLFFFVYENAFLPFALGIMAVAACAMLLV 3600 K ++VKG W++ TFL S I+ +W++F +V N L + V + AMLLV Sbjct 3551 KRTRLVKGIVCWIMASTFLFS-CIITAFVKWTMFMYVTTN-MLSITFCALCVISLAMLLV 3608 Query 3601 KHKHAFLCLFLLPSLATVAYFN-MVYMPASWVMRIMTWLELADTSLSGYRLKDCVMYASA 3659 KHKH +L ++++P L T+ Y N +V ++ + WL S+ Y D V+Y Sbjct 3609 KHKHLYLTMYIIPVLFTLLYNNYLVVYKQTFRGYVYAWLSYYVPSVE-YTYTDEVIYGML 3667 Query 3660 LVL-LILMTARTVYDDAARRVWTLMNVITLVYKVYYGNSLDQAISMWALVISVTSNYSGV 3718 L++ ++ +T R++ D + + VI++V Y G++L++ I + ++ S+ Y+ Sbjct 3668 LLIGMVFVTLRSINHDLFSFIMFVGRVISVVSLWYMGSNLEEEILL--MLASLFGTYTWT 3725 Query 3719 VTTIMFLARAIV-FVCVEYYPLLFITGNTLQCIMLVYCFLGYCCCCYFGLFCLLNRYFRL 3777 M A+ I +V V L F ++ +++ Y F+GY CY+GLF L+N FR+ Sbjct 3726 TALSMAAAKVIAKWVAVNV--LYFTDIPQIKIVLVCYLFIGYIISCYWGLFSLMNSLFRM 3783 Query 3778 TLGVYDYLVSTQEFRYMNSQGLLPPKSSIDAFKLNIKLLGIGGKPCIKVATVQSKMSDVK 3837 LGVY+Y +S QE RYMN+ GL PPK+S +A LN KLLGIGG P I+V+ QSK++DVK Sbjct 3784 PLGVYNYKISVQELRYMNANGLRPPKNSFEALMLNFKLLGIGGVPIIEVSQFQSKLTDVK 3843 Query 3838 CTSVVLLSVLQQLRVESSSKLWAQCVQLHNDILLAKDTTEAFEKMVSLLSVLLSMQGAVD 3897 C +VVLL+ LQ L V S+SKLW C LHN+IL D AFEK+ LL VL + AVD Sbjct 3844 CANVVLLNCLQHLHVASNSKLWQYCSTLHNEILATSDLGVAFEKLAQLLIVLFANPAAVD 3903 Query 3898 ------INKLCEEMLDNRATLQAIASEFSSLPSYAAYATAQEAYEQAVSNGDS-EVVLKK 3950 I ++C++ + LQA+ SEF ++ S+ Y A++ ++A S+G + + LK+ Sbjct 3904 SKCLTSIEEVCDDYAKDNTVLQALQSEFVNMASFVEYEVAKKNLDEARSSGSANQQQLKQ 3963 Query 3951 LKKSLNVAKSEFDHDAAMQRKLEKMADQAMTQMYKQARSEDKRAKVTSAMQTMLFTMLRK 4010 L+K+ N+AKS ++ D A+ RKLE+MAD A+T MYK+AR DK++KV SA+QTMLF+M+RK Sbjct 3964 LEKACNIAKSAYERDRAVARKLERMADLALTNMYKEARINDKKSKVVSALQTMLFSMVRK 4023 Query 4011 LDNDALNNIINNARDGCVPLNIIPLTTAAKLMVVVPDYGTYKNTCDGNTFTYASALWEIQ 4070 LDN ALN+I++NA GCVPLN IP A L ++VPD Y D TYA +W+IQ Sbjct 4024 LDNQALNSILDNAVKGCVPLNAIPSLAANTLTIIVPDKSVYDQVVDNVYVTYAGNVWQIQ 4083 Query 4071 QVVDADSKIVQLSEINMDNSPNLAWPLIVTALRAN--SAVKLQNNELSPVALRQMSCAAG 4128 + D+D QL+EI S + WPL++ A R N SA LQNNEL P L+ +G Sbjct 4084 TIQDSDGTNKQLNEI----SDDCNWPLVIIANRHNEVSATVLQNNELMPAKLKTQVVNSG 4139 Query 4129 TTQTACTDDNALAYYNNAKGGRFVLALLSDHQDLKWARFPKSDGTGTIYTELEPPCRFVT 4188 QT T YYNN+ G+ V A+LSD LK+ + K DG + EL+PPC+F Sbjct 4140 PDQTCNTPTQ--CYYNNSNNGKIVYAILSDVDGLKYTKILKDDGNFVV-LELDPPCKFTV 4196 Query 4189 DTPKGPKVKYLYFIKGLNNLNRGMVLGSLAATVRLQAGNATEVPANSTVLSFCAFAVDPA 4248 KG K+KYLYF+KG N L RG V+G++++TVRLQAG ATE +NS++LS CAF+VDP Sbjct 4197 QDVKGLKIKYLYFVKGCNTLARGWVVGTISSTVRLQAGTATEYASNSSILSLCAFSVDPK 4256 Query 4249 KAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPEANMDQESFGGASCCLYCRCHIDHP 4308 K Y D++ GG PI NCVKMLC H GTG AITV P+A +Q+S+GGAS C+YCR ++HP Sbjct 4257 KTYLDFIQQGGTPIANCVKMLCDHAGTGMAITVKPDATTNQDSYGGASVCIYCRARVEHP 4316 Query 4309 NPKGFCDLKGKYVQIPTTCANDPVGFTLRNTVCTVCGMWKGYGCSCDQLREPMMQSADAS 4368 + G C L+GK+VQ+P DPV + L + VC VCG W+ CSC + +QS D + Sbjct 4317 DVDGLCKLRGKFVQVPVG-IKDPVSYVLTHDVCQVCGFWRDGSCSCVS-TDTTVQSKD-T 4373 Query 4369 TFLNGFAV 4376 FLNGF V Sbjct 4374 NFLNGFGV 4381 Range 2: 1273 to 1427 Score:86.3 bits(212), Expect:8e-15, Method:Compositional matrix adjust., Identities:51/155(33%), Positives:78/155(50%), Gaps:2/155(1%) Query 1007 LTDNVAIKCIDIVKEAQSAKPTVIVNAANTHLKHGGGVAGALNKATNGAMQNESDEYIRQ 1066 +T NV DI+K ++ K V+VN AN H+ HGGGVA A+ A E+ + ++ Sbjct 1273 ITPNVCFVKGDIIKVSKRVKAEVVVNPANGHMAHGGGVAKAIAVAAGQQFVKETTDMVKS 1332 Query 1067 NGPLTVGGSCLLSGHNLAEKCLHVVGPN--LNAGEDVQLLKRAYENFNSQDVLLAPLLSA 1124 G G + +G L + L+VVGP+ + LL+R Y++ N D ++ L+SA Sbjct 1333 KGVCATGDCYVSTGGKLCKTVLNVVGPDARTQGKQSYALLERVYKHLNKYDCVVTTLISA 1392 Query 1125 GIFGAKPLQSLKMCVEIVRTQVYLAVNDKSLYDQI 1159 GIF SL + QV L N++ +D I Sbjct 1393 GIFSVPSDVSLTYLLGTAEKQVVLVSNNQEDFDLI 1427 Range 3: 748 to 1016 Score:73.9 bits(180), Expect:4e-11, Method:Compositional matrix adjust., Identities:71/284(25%), Positives:127/284(44%), Gaps:24/284(8%) Query 714 RGLYRQCIRGKEQLQLLMP---LKAPKEVTFLEGDAHDTVLTSEEVVLKSGELEALETPI 770 RGL + L MP KA ++ +L+G D L V + + L TP Sbjct 748 RGLLHSSQLPLDVYDLTMPSQVQKAKQKPIYLKGSGSDFSLADSVVEVVTTSL----TPC 803 Query 771 DSFTSGAVVGTPVCINGLMLLELENKEQYCALSPGLLAT-NNVFRLKGGAPVKGVTFGED 829 ++ V +CI + + + Y + G + + +R+ + VTF E Sbjct 804 -GYSEPPKVADKICIVDNVYMAKAGDKYYPVVVDGHVGLLDQAWRVPCAG--RRVTFKEQ 860 Query 830 -TVLEVQGY-KNVKITFELDVRVDKVLNEKCSVYTVESGTEVTEFACVVAEAVVKTLQPV 887 TV E+ K +K+ +ELD + +LN C V+ V+ ++ EF VV +A+ + L P Sbjct 861 PTVNEIASTPKTIKVFYELDKDFNTILNTACGVFEVDDTVDMEEFYAVVVDAIEEKLSPC 920 Query 888 SDLL---TPMGIDLDEWSVATFYLFDDAGEEKLSSRMYCSFYPPDEEEDCEECEDEEETC 944 +L + L + + +LFD+AGEE L+S++YC+F P++++ EE Sbjct 921 KELEGVGAKVSAFLQKLEDNSLFLFDEAGEEVLASKLYCAFTAPEDDDFLEE-------- 972 Query 945 EHEYGTEDDYKGLPLEFGASTETPHVEEEEEEEDWLDDAIEAEP 988 + + + L ++ E E+EE + L+D ++ P Sbjct 973 SGVEEDDVEGEETDLTVTSAGEPCVASEQEESSEILEDTLDDGP 1016 >RecName: Full=Replicase polyprotein 1a; Short=pp1a; AltName: Full=ORF1a polyprotein; Contains: RecName: Full=Non-structural protein 1; Short=nsp1; AltName: Full=p28; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p65; Contains: RecName: Full=Papain-like protease nsp3; Short=PL-PRO; AltName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=PL1-PRO/PL2-PRO; AltName: Full=PL1/PL2; AltName: Full=PL2-PRO; AltName: Full=Papain-like proteinases 1/2; AltName: Full=p210; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; AltName: Full=Peptide HD2; AltName: Full=p44; Contains: RecName: Full=3C-like proteinase nsp5; Short=3CL-PRO; Short=3CLp; AltName: Full=M-PRO; AltName: Full=nsp5; AltName: Full=p27; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; AltName: Full=p10; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; AltName: Full=p22; Contains: RecName: Full=RNA-capping enzyme subunit nsp9; AltName: Full=Non-structural protein 9; Short=nsp9; AltName: Full=p12; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; AltName: Full=p15; Contains: RecName: Full=Non-structural protein 11; Short=nsp11 [Bovine enteric coronavirus (strain 98TXSF-110-ENT)] Sequence ID: P0C6T8.1 Length: 4383 Range 1: 1565 to 4381 Score:1888 bits(4891), Expect:0.0, Method:Compositional matrix adjust., Identities:1096/2888(38%), Positives:1629/2888(56%), Gaps:121/2888(4%) Query 1539 IKVFTTVDNTNLHTHIVDMSMTYGQQFGPTYLDGADVTKIKPHVNHEGKTFFVLPSDDTL 1598 + + TVD N V + ++G+ G + DG +VTK K +N++GK FF D L Sbjct 1565 VDILLTVDGVNFTNRFVPVGESFGKSLGNVFCDGVNVTKHKCDINYKGKVFFQF---DNL 1621 Query 1599 RSE---AFEYYHTIDESFLGRYMSALNHTKKWKFPQVGGLTSIKWADNNCYLSSVLLALQ 1655 SE A D+ L Y + L + KW+ G + K A+NNC+++ L LQ Sbjct 1622 SSEDLKAVRSSFNFDQKELLAYYNMLVNCSKWQVVFNGKYFTFKQANNNCFVNVSCLMLQ 1681 Query 1656 QVEVKFNAPALQEAYYRARAGDAANFCALILAYSNKTVGELGDVRETMTHLLQHANLESA 1715 + +KF QEA+ R+G A F +L+LA G+ D R+ + + +L A Sbjct 1682 SLNLKFKIVQWQEAWLEFRSGRPARFVSLVLAKGGFKFGDPADSRDFLRVVFSQVDLTGA 1741 Query 1716 KRVLNVVCKHCGQKTTTLKGVEAVMYMGTLSYDELKTGVSIPCVCGRNATQYLVQQESSF 1775 + CK CG K GV+AVM+ GTLS ++L+ G ++ C CG+ + V+ + F Sbjct 1742 ICDFEIACK-CGVKQEQRTGVDAVMHFGTLSREDLEIGYTVDCSCGKKLI-HCVRFDVPF 1799 Query 1776 VMMSAPPAEYKLQQGAFLCANEYTGNYQCGHYTHITAKETLYRVDGAHLTKMSEYKGPVT 1835 ++ S PA KL +G AN + G+ + GHY H+ +++ D +++ K+++ G ++ Sbjct 1800 LICSNTPASVKLPKGVG-SANIFKGD-KVGHYVHVKCEQSYQLYDASNVKKVTDVTGNLS 1857 Query 1836 DVFY-KETSYTTAIKPVSYKLDGVTYTEIEPKLDGYYKKGNAYYTEQPIDL-VPTQPMPN 1893 D Y K T +Y LD V E P L YY G YYT++ I T + Sbjct 1858 DCLYLKNLKQTFKSVLTTYYLDDVKKIEYNPDLSQYYCDGGKYYTQRIIKAQFKTFEKVD 1917 Query 1894 ASFDNFKLTCSNTKFADDLNQMTGFKKPAS-RELTVTFFPDLNGDVVAIDYRHYSTSFKK 1952 + NFKL D LN GF E VT +P GDVV Y +++ Sbjct 1918 GVYTNFKLI--GHTICDILNAKLGFDSSKEFVEYKVTEWPTATGDVVLATDDLYVKRYER 1975 Query 1953 GAKLVHKPILW--HINQTTNKTTYKPNIWCLRCLWSTKPVDTSNSFEVLVVEDTQGMDNL 2010 G KP++W H + N TY ++ + N F+VL V+D ++ Sbjct 1976 GCITFGKPVIWLSHEQASLNSLTY----------FNRPLLVDENKFDVLKVDDVDDGGDI 2025 Query 2011 ACESQTTTSEEV--VENPTVQKEIIECDVKTTEVVGNVILKPSEEGVKVTQELGHEDLMA 2068 + ES S+E+ ++ V+K +V +VI+ +K + L D+ Sbjct 2026 S-ESDAKESKEINIIKLSGVKKPF--------KVEDSVIVNDDTSEIKYVKSLSIVDVYD 2076 Query 2069 AYVEETSITIKKPNELSLALGLKTLA--THGAAAINSVPWSKI-LAYVKPFLGQTAVITS 2125 ++ ++ N LS+A+ + T+ + S+P + L +KP + Sbjct 2077 MWLTGCRYVVRTANALSMAVNVPTIRKFIKFGMTLVSIPIDLLNLREIKPVFNVVKAV-R 2135 Query 2126 NCIKKCVQRVFSNYMPYVITLLF--------QLCTFTKSTNSRIKASLPTTIAKNSVKS- 2176 N I C N++ ++ LLF +T S++ L KN+ + Sbjct 2136 NKISACF-----NFIKWLFVLLFGWIKISADNKVIYTTEVASKLTCKLVALAFKNAFLTF 2190 Query 2177 ----VAK-LCLDVCINYVKSPKFSKLFTIVMWLLLLSICLGSL-TYVTAVLGVCLSSLGV 2230 VA+ C+ I + F+ ++ V++ +G L T+V + S+ + Sbjct 2191 KWSVVARGACIIATIFLLW---FNFIYANVIFSDFYLPKIGFLPTFVGKIAQWIKSTFSL 2247 Query 2231 PSYCDGVRELYINSSNVTTMDFCQGYFPCSVCLSGLDSLDSYPALETIQVTISSYK-LDL 2289 + CD LY +C G C CL+G D LD+Y A++ +Q +D Sbjct 2248 VTICD----LYSIQDVGFKNQYCNGSIACQFCLAGFDMLDNYKAIDVVQYEADRRAFVDY 2303 Query 2290 T-FLGLAAEWLLAYMLFTKFFYLLGLSAIMQAFFGYFASHFISNS--WLMWFIISIVQMA 2346 T L + E +++Y L+T +FY L +Q + F+ ++ W + ++S+ M Sbjct 2304 TGVLKIVIELIVSYALYTAWFYPLFALISIQILTTWLPELFMLSTLHWSVRLLVSLANML 2363 Query 2347 PVSAMVRMYIFFASFYYVWKSYVHIMDGCTSSTCMMCYKRNRATRVECTTIVNGVKRSFY 2406 P +R YI ASF ++ + H+ GC+ C+ CYKRNR+ RV+C+TIV G+ R + Sbjct 2364 PAHVFMRFYIIIASFIKLFILFRHVAYGCSKPGCLFCYKRNRSLRVKCSTIVGGMIRYYD 2423 Query 2407 VYANGGRGFCKAHNWNCLNCDTFCAGSTFISDEVARDLSLQFKRPINPTDQSAYVVDSVT 2466 V ANGG GFC H WNC++CD++ G+TFI+ E A DLS + KRPI PTD + + V V Sbjct 2424 VMANGGTGFCSKHQWNCIDCDSYKPGNTFITVEAALDLSKELKRPIQPTDVAYHTVTDVK 2483 Query 2467 VKNGALHLYFDKAGQKTYERHPLSHFVNLDNLRANNTKGSLPINVIVFDGKSKCEESAAK 2526 + L++++ GQ+TY+ S FV+ NL + KG ++V+V + + +++ Sbjct 2484 QVGCYMRLFYERDGQRTYDDVNASLFVDYSNLLHSKVKGVPNMHVVVVENDA--DKANFL 2541 Query 2527 SASVYYSQLMCQPILLLDQALVSDVGDSTEVSVKMFDAYVDTFSATFSVPMEKLKALVAT 2586 +A+V+Y+Q + +PIL++D+ L++ T V+ MFD YVDTF + F V + L AL+AT Sbjct 2542 NAAVFYAQSLFRPILMVDKNLITTANTGTSVTETMFDVYVDTFLSMFDVDKKSLNALIAT 2601 Query 2587 AHSELAKGVALDGVLSTFVSAARQGV-VDTDVDTKDVIECLKLSHHSDIEVTGDSCNNFM 2645 AHS + +G + VL TF+S AR+ +D+DVDTK + + + + + +E+T +SCNN + Sbjct 2602 AHSSIKQGTQICKVLDTFLSCARKSCSIDSDVDTKCLADSVMSAVSAGLELTDESCNNLV 2661 Query 2646 LTYNKVENMTPRDLGACIDCNARHINAQVAKSHNVSLVWNVKDYMSLSEQLRKQIRSAAK 2705 TY K +N+ DLG I +A+H+ VAK VS +W+V + LS + +++ A Sbjct 2662 PTYLKGDNIVAADLGVLIQNSAKHVQGNVAKIAGVSCIWSVDAFNQLSSDFQHKLKKACC 2721 Query 2706 KNNIPFRLTCATTRQVVNVITTKISLKGGKVVSTWFKLLLKVTLLCVLAALFCYVIMPVH 2765 K + +LT V+V+TT SLKGG V S + + ++L+C + L+C +MP + Sbjct 2722 KTGLKLKLTYNKQMANVSVLTTPFSLKGGAVFSYFVYVCFLLSLVCFIG-LWC--LMPTY 2778 Query 2766 SLSVHDGYTNEIIGYKAIQDGVTRDIVSTDDCFANKHAGFDSWFSQRGG--SYRNDKNCP 2823 ++ D YK + +GV RD+ D CFANK FD W+ G Y N CP Sbjct 2779 TVHKSDFQLPVYASYKVLDNGVIRDVSVEDVCFANKFEQFDQWYESTFGLSYYSNSMACP 2838 Query 2824 VVAAIITREIGFIVPGLPGTVLRALNGDFLHFLPRVFSAVGNICYTPSKLIEYSDFATSA 2883 +V A++ +++G V +P VLR LHF+ SA G CYTP I YS+F S Sbjct 2839 IVVAVVDQDLGSTVFNVPTKVLR-YGYHVLHFITHALSADGVQCYTPHSQISYSNFYASG 2897 Query 2884 CVLAAECTIFKDAMGKPVPYCYDTNLLEGSISYSELRPDTRYVLMDG-SIIQFPNTYLEG 2942 CVL++ CT+F A G P PYCY L++ + YS L P RY L + I+FP EG Sbjct 2898 CVLSSACTMFAMADGSPQPYCYTEGLMQNASLYSSLVPHVRYNLANAKGFIRFPEVLREG 2957 Query 2943 SVRVVTTFDAEYCRHGTCERSEVGVCLSTSGRWVLNNEHYRALPGVFCGVDAMNLIANIF 3002 VR+V T YCR G CE ++ G+C + +G WVLNN++YR+LPG FCG D +LI +F Sbjct 2958 LVRIVRTRSMSYCRVGLCEEADEGICFNFNGSWVLNNDYYRSLPGTFCGRDVFDLIYQLF 3017 Query 3003 TPLVQPVGALDVSASVVAGGIIAILVTCAAYYFMKFRRAFGEYNHVVAANALLFLMSFTI 3062 L QPV L ++AS +AG I+A++V YY +K +RAFG+Y +V N +++ ++F + Sbjct 3018 KGLAQPVDFLALTASSIAGAILAVIVVLVFYYLIKLKRAFGDYTSIVFVNVIVWCVNFMM 3077 Query 3063 LCLAPAYSFLPGVYSIFYLYLTFYFTNDVSFLAHLQWFAMFSPIVPFWITAIYVFCISLK 3122 L + Y L VY+I Y Y T YF +++S + HLQW M+ I+P W +Y+ + Sbjct 3078 LFVFQVYPTLSCVYAICYFYATLYFPSEISVIMHLQWLVMYGTIMPLWFCLLYISVVVSN 3137 Query 3123 HFHWFFSNYLKKRVMFNGVTFSTFEEAALCTFLLNKEMYLRLRSETLLPLTQYNRYLALY 3182 H W F+ +R+ + + TFEE AL TF++ K+ Y +L++ L +NRYL+LY Sbjct 3138 HAFWVFA--YCRRLGTSVRSDGTFEEMALTTFMITKDSYCKLKNS--LSDVAFNRYLSLY 3193 Query 3183 NKYKYFSGALDTTSYREAACCHLAKALNDFSNS-GADVLYQPPQTSITSAVLQSGFRKMA 3241 NKY+Y+SG +DT +YREAAC LAKA++ F+N+ G+DVLYQPP S++++ LQSG KM Sbjct 3194 NKYRYYSGKMDTAAYREAACSQLAKAMDTFTNNNGSDVLYQPPTASVSTSFLQSGIVKMV 3253 Query 3242 FPSGKVEGCMVQVTCGTTTLNGLWLDDTVYCPRHVVCTAEDMLNPNYDDLLIRKSNHSFL 3301 P+ KVE C+V VT G TLNGLWLDD VYCPRHV+C+A DM NP+Y +LL R ++ F Sbjct 3254 NPTSKVEPCIVSVTYGNMTLNGLWLDDKVYCPRHVICSASDMTNPDYTNLLCRVTSSDFT 3313 Query 3302 VQAGNVQLRVIGHSMQNCLLRLKVDTSNPKTPKYKFVRIQPGQTFSVLACYNGSPSGVYQ 3361 V + L V+ + MQ C+L L V N +TPKY F ++PG+TF+VLA YNG P G + Sbjct 3314 VLFDRLSLTVMSYQMQGCMLVLTVTLQNSRTPKYTFGVVKPGETFTVLAAYNGKPQGAFH 3373 Query 3362 CAMRPNHTIKGSFLNGSCGSVGFNIDYDCVSFCYMHHMELPTGVHAGTDLEGKFYGPFVD 3421 MR ++TIKGSFL GSCGSVG+ + DCV F YMH +EL TG H GTD G FYGP+ D Sbjct 3374 VTMRSSYTIKGSFLCGSCGSVGYVLMGDCVKFVYMHQLELSTGCHTGTDFNGDFYGPYKD 3433 Query 3422 RQTAQAAGTDTTITLNVLAWLYAAVINGDRWFLNRFTTTLNDFNLVAMKYNYEPLTQDHV 3481 Q Q D ++N +AWLYAA++N WF+ ++ DFN+ A+ + + D V Sbjct 3434 AQVVQLPVQDYIQSVNFVAWLYAAILNNCNWFVQSDKCSVEDFNVWALSNGFSQVKSDLV 3493 Query 3482 DILGPLSAQTGIAVLDMCAALKELLQNGMNGRTILGSTILEDEFTPFDVVRQCSGVTFQG 3541 + L++ TG+++ + AA+K L+NG GR I+GS EDE TP DV +Q +G+ Q Sbjct 3494 --IDALASMTGVSLETLLAAIKR-LKNGFQGRQIMGSCSFEDELTPSDVYQQLAGIKLQS 3550 Query 3542 KFKKIVKGTHHWMLL-TFLTSLLILVQSTQWSLFFFVYENAFLPFALGIMAVAACAMLLV 3600 K ++VKG W++ TFL S I+ +W++F +V N L + V + AMLLV Sbjct 3551 KRTRLVKGIVCWIMASTFLFS-CIITAFVKWTMFMYVTTN-MLSITFCALCVISLAMLLV 3608 Query 3601 KHKHAFLCLFLLPSLATVAYFN-MVYMPASWVMRIMTWLELADTSLSGYRLKDCVMYASA 3659 KHKH +L ++++P L T+ Y N +V ++ + WL S+ Y D V+Y Sbjct 3609 KHKHLYLTMYIIPVLFTLLYNNYLVVYKQTFRGYVYAWLSYYVPSVE-YTYTDEVIYGML 3667 Query 3660 LVL-LILMTARTVYDDAARRVWTLMNVITLVYKVYYGNSLDQAISMWALVISVTSNYSGV 3718 L++ ++ +T R++ D + + VI++V Y G++L++ I + ++ S+ Y+ Sbjct 3668 LLIGMVFVTLRSINHDLFSFIMFVGRVISVVSLWYMGSNLEEEILL--MLASLFGTYTWT 3725 Query 3719 VTTIMFLARAIV-FVCVEYYPLLFITGNTLQCIMLVYCFLGYCCCCYFGLFCLLNRYFRL 3777 M A+ I +V V L F ++ +++ Y F+GY CY+GLF L+N FR+ Sbjct 3726 TALSMAAAKVIAKWVAVNV--LYFTDIPQIKIVLVCYLFIGYIISCYWGLFSLMNSLFRM 3783 Query 3778 TLGVYDYLVSTQEFRYMNSQGLLPPKSSIDAFKLNIKLLGIGGKPCIKVATVQSKMSDVK 3837 LGVY+Y +S QE RYMN+ GL PPK+S +A LN KLLGIGG P I+V+ QSK++DVK Sbjct 3784 PLGVYNYKISVQELRYMNANGLRPPKNSFEALMLNFKLLGIGGVPIIEVSQFQSKLTDVK 3843 Query 3838 CTSVVLLSVLQQLRVESSSKLWAQCVQLHNDILLAKDTTEAFEKMVSLLSVLLSMQGAVD 3897 C +VVLL+ LQ L V S+SKLW C LHN+IL D AFEK+ LL VL + AVD Sbjct 3844 CANVVLLNCLQHLHVASNSKLWQYCSTLHNEILATSDLGVAFEKLAQLLIVLFANPAAVD 3903 Query 3898 ------INKLCEEMLDNRATLQAIASEFSSLPSYAAYATAQEAYEQAVSNGDS-EVVLKK 3950 I ++C++ + LQA+ SEF ++ S+ Y A++ ++A S+G + + LK+ Sbjct 3904 SKCLTSIEEVCDDYAKDNTVLQALQSEFVNMASFVEYEVAKKNLDEARSSGSANQQQLKQ 3963 Query 3951 LKKSLNVAKSEFDHDAAMQRKLEKMADQAMTQMYKQARSEDKRAKVTSAMQTMLFTMLRK 4010 L+K+ N+AKS ++ D A+ RKLE+MAD A+T MYK+AR DK++KV SA+QTMLF+M+RK Sbjct 3964 LEKACNIAKSAYERDRAVARKLERMADLALTNMYKEARINDKKSKVVSALQTMLFSMVRK 4023 Query 4011 LDNDALNNIINNARDGCVPLNIIPLTTAAKLMVVVPDYGTYKNTCDGNTFTYASALWEIQ 4070 LDN ALN+I++NA GCVPLN IP A L ++VPD Y D TYA +W+IQ Sbjct 4024 LDNQALNSILDNAVKGCVPLNAIPSLAANTLTIIVPDKSVYDQVVDNVYVTYAGNVWQIQ 4083 Query 4071 QVVDADSKIVQLSEINMDNSPNLAWPLIVTALRAN--SAVKLQNNELSPVALRQMSCAAG 4128 + D+D QL+EI S + WPL++ A R N SA LQNNEL P L+ +G Sbjct 4084 TIQDSDGTNKQLNEI----SDDCNWPLVIIANRHNEVSATVLQNNELMPAKLKTQVVNSG 4139 Query 4129 TTQTACTDDNALAYYNNAKGGRFVLALLSDHQDLKWARFPKSDGTGTIYTELEPPCRFVT 4188 QT T YYNN+ G+ V A+LSD LK+ + K DG + EL+PPC+F Sbjct 4140 PDQTCNTPTQ--CYYNNSNNGKIVYAILSDVDGLKYTKILKDDGNFVV-LELDPPCKFTV 4196 Query 4189 DTPKGPKVKYLYFIKGLNNLNRGMVLGSLAATVRLQAGNATEVPANSTVLSFCAFAVDPA 4248 KG K+KYLYF+KG N L RG V+G++++TVRLQAG ATE +NS++LS CAF+VDP Sbjct 4197 QDVKGLKIKYLYFVKGCNTLARGWVVGTISSTVRLQAGTATEYASNSSILSLCAFSVDPK 4256 Query 4249 KAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPEANMDQESFGGASCCLYCRCHIDHP 4308 K Y D++ GG PI NCVKMLC H GTG AITV P+A +Q+S+GGAS C+YCR ++HP Sbjct 4257 KTYLDFIQQGGTPIANCVKMLCDHAGTGMAITVKPDATTNQDSYGGASVCIYCRARVEHP 4316 Query 4309 NPKGFCDLKGKYVQIPTTCANDPVGFTLRNTVCTVCGMWKGYGCSCDQLREPMMQSADAS 4368 + G C L+GK+VQ+P DPV + L + VC VCG W+ CSC + +QS D + Sbjct 4317 DVDGLCKLRGKFVQVPVG-IKDPVSYVLTHDVCQVCGFWRDGSCSCVS-TDTTVQSKD-T 4373 Query 4369 TFLNGFAV 4376 FLNGF V Sbjct 4374 NFLNGFGV 4381 Range 2: 1273 to 1427 Score:85.9 bits(211), Expect:8e-15, Method:Compositional matrix adjust., Identities:51/155(33%), Positives:78/155(50%), Gaps:2/155(1%) Query 1007 LTDNVAIKCIDIVKEAQSAKPTVIVNAANTHLKHGGGVAGALNKATNGAMQNESDEYIRQ 1066 +T NV DI+K ++ K V+VN AN H+ HGGGVA A+ A E+ + ++ Sbjct 1273 ITPNVCFVKGDIIKVSKRVKAEVVVNPANGHMAHGGGVAKAIAVAAGQQFVKETTDMVKS 1332 Query 1067 NGPLTVGGSCLLSGHNLAEKCLHVVGPN--LNAGEDVQLLKRAYENFNSQDVLLAPLLSA 1124 G G + +G L + L+VVGP+ + LL+R Y++ N D ++ L+SA Sbjct 1333 KGVCATGDCYVSTGGKLCKTVLNVVGPDARTQGKQSYALLERVYKHLNKYDCVVTTLISA 1392 Query 1125 GIFGAKPLQSLKMCVEIVRTQVYLAVNDKSLYDQI 1159 GIF SL + QV L N++ +D I Sbjct 1393 GIFSVPSDVSLTYLLGTAEKQVVLVSNNQEDFDLI 1427 Range 3: 748 to 1016 Score:73.2 bits(178), Expect:6e-11, Method:Compositional matrix adjust., Identities:71/284(25%), Positives:127/284(44%), Gaps:24/284(8%) Query 714 RGLYRQCIRGKEQLQLLMP---LKAPKEVTFLEGDAHDTVLTSEEVVLKSGELEALETPI 770 RGL + L MP KA ++ +L+G D L V + + L TP Sbjct 748 RGLLHSSQLPLDVYDLTMPSQVQKAKQKPIYLKGSGSDFSLADSVVEVVTTSL----TPC 803 Query 771 DSFTSGAVVGTPVCINGLMLLELENKEQYCALSPGLLAT-NNVFRLKGGAPVKGVTFGED 829 ++ V +CI + + + Y + G + + +R+ + VTF E Sbjct 804 -GYSEPPKVADKICIVDNVYMAKAGDKYYPVVVDGHVGLLDQAWRVPCAG--RRVTFKEQ 860 Query 830 -TVLEVQGY-KNVKITFELDVRVDKVLNEKCSVYTVESGTEVTEFACVVAEAVVKTLQPV 887 TV E+ K +K+ +ELD + +LN C V+ V+ ++ EF VV +A+ + L P Sbjct 861 PTVNEIASTPKTIKVFYELDKDFNTILNTACGVFEVDDTVDMEEFYAVVIDAIEEKLSPC 920 Query 888 SDLL---TPMGIDLDEWSVATFYLFDDAGEEKLSSRMYCSFYPPDEEEDCEECEDEEETC 944 +L + L + + +LFD+AGEE L+S++YC+F P++++ EE Sbjct 921 KELEGVGAKVSAFLQKLEDNSLFLFDEAGEEVLASKLYCAFTAPEDDDFLEE-------- 972 Query 945 EHEYGTEDDYKGLPLEFGASTETPHVEEEEEEEDWLDDAIEAEP 988 + + + L ++ E E+EE + L+D ++ P Sbjct 973 SGVEEDDVEGEETDLTVTSAGEPCVASEQEESSEILEDTLDDGP 1016 >RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Host translation inhibitor nsp1; Short=nsp1; AltName: Full=p28; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p65; Contains: RecName: Full=Papain-like proteinase nsp3; Short=PL-PRO; AltName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=p210; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; AltName: Full=Peptide HD2; AltName: Full=p44; Contains: RecName: Full=3C-like proteinase nsp5; Short=3CL-PRO; Short=3CLp; AltName: Full=M-PRO; AltName: Full=nsp5; AltName: Full=p27; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; AltName: Full=p10; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; AltName: Full=p22; Contains: RecName: Full=Viral protein genome-linked nsp9; AltName: Full=Non-structural protein 9; Short=nsp9; AltName: Full=RNA-capping enzyme subunit nsp9; AltName: Full=p12; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; AltName: Full=p15; Contains: RecName: Full=RNA-directed RNA polymerase nsp12; Short=Pol; Short=RdRp; AltName: Full=nsp12; AltName: Full=p100; Contains: RecName: Full=Helicase nsp13; Short=Hel; AltName: Full=nsp13; AltName: Full=p67; Contains: RecName: Full=Guanine-N7 methyltransferase nsp14; Short=ExoN; AltName: Full=nsp14; Contains: RecName: Full=Uridylate-specific endoribonuclease nsp15; AltName: Full=NendoU; AltName: Full=nsp15; AltName: Full=p35; Contains: RecName: Full=2'-O-methyltransferase nsp16; AltName: Full=nsp16 [Bovine respiratory coronavirus (strain 98TXSF-110-LUN)] Sequence ID: P0C6W8.1 Length: 7094 Range 1: 1565 to 4377 Score:1881 bits(4872), Expect:0.0, Method:Compositional matrix adjust., Identities:1093/2884(38%), Positives:1627/2884(56%), Gaps:121/2884(4%) Query 1539 IKVFTTVDNTNLHTHIVDMSMTYGQQFGPTYLDGADVTKIKPHVNHEGKTFFVLPSDDTL 1598 + + TVD N V + +G+ G + DG +VTK K +N++GK FF D L Sbjct 1565 VDILLTVDGVNFTNRFVPVGENFGKSLGNVFCDGVNVTKHKCDINYKGKVFFQF---DNL 1621 Query 1599 RSE---AFEYYHTIDESFLGRYMSALNHTKKWKFPQVGGLTSIKWADNNCYLSSVLLALQ 1655 SE A D+ L Y + L + KW+ G + K A+NNC+++ L LQ Sbjct 1622 SSEDLKAVRSSFNFDQKELLAYYNMLVNCSKWQVVFNGKYFTFKQANNNCFVNVSCLMLQ 1681 Query 1656 QVEVKFNAPALQEAYYRARAGDAANFCALILAYSNKTVGELGDVRETMTHLLQHANLESA 1715 + +KF QEA+ R+G A F +L+LA G+ D R+ + + +L A Sbjct 1682 SLNLKFKIVQWQEAWLEFRSGRPARFVSLVLAKGGFKFGDPADSRDFLRVVFSQVDLTGA 1741 Query 1716 KRVLNVVCKHCGQKTTTLKGVEAVMYMGTLSYDELKTGVSIPCVCGRNATQYLVQQESSF 1775 + CK CG K GV+AVM+ GTLS ++L+ G ++ C CG+ + V+ + F Sbjct 1742 ICDFEIACK-CGVKQEQRTGVDAVMHFGTLSREDLEIGYTVDCSCGKKLI-HCVRFDVPF 1799 Query 1776 VMMSAPPAEYKLQQGAFLCANEYTGNYQCGHYTHITAKETLYRVDGAHLTKMSEYKGPVT 1835 ++ S PA KL +G AN + G+ + GHY H+ +++ D +++ K+++ G ++ Sbjct 1800 LICSNTPASVKLPKGVG-SANIFKGD-KVGHYVHVKCEQSYQLYDASNVKKVTDVTGNLS 1857 Query 1836 DVFY-KETSYTTAIKPVSYKLDGVTYTEIEPKLDGYYKKGNAYYTEQPIDL-VPTQPMPN 1893 D Y K T +Y LD V E +P L YY G YYT++ I T + Sbjct 1858 DCLYLKNLKQTFKSVLTTYYLDDVKKIEYKPDLSQYYCDGGKYYTQRIIKAQFKTFEKVD 1917 Query 1894 ASFDNFKLTCSNTKFADDLNQMTGFKKPAS-RELTVTFFPDLNGDVVAIDYRHYSTSFKK 1952 + NFKL D LN GF E VT +P GDVV Y +++ Sbjct 1918 GVYTNFKLI--GHTICDILNAKLGFDSSKEFVEYKVTEWPTATGDVVLATDDLYVKRYER 1975 Query 1953 GAKLVHKPILW--HINQTTNKTTYKPNIWCLRCLWSTKPVDTSNSFEVLVVEDTQGMDNL 2010 G KP++W H + N TY ++ + N F+VL V+D ++ Sbjct 1976 GCITFGKPVIWLSHEQASLNSLTY----------FNRPLLVDENKFDVLKVDDVDDGGDI 2025 Query 2011 ACESQTTTSEEV--VENPTVQKEIIECDVKTTEVVGNVILKPSEEGVKVTQELGHEDLMA 2068 + ES S+E+ ++ V+K +V +VI+ +K + L D+ Sbjct 2026 S-ESDAKESKEINIIKLSGVKKPF--------KVEDSVIVNDDTSEIKYVKSLSIVDVYD 2076 Query 2069 AYVEETSITIKKPNELSLALGLKTLA--THGAAAINSVPWSKI-LAYVKPFLGQTAVITS 2125 ++ ++ N+LS+A+ + T+ + S+P + L +KP + Sbjct 2077 MWLTGCRYVVRTANDLSMAVNVPTIRKFIKFGMTLVSIPIDLLNLREIKPVFNVVKAV-R 2135 Query 2126 NCIKKCVQRVFSNYMPYVITLLF--------QLCTFTKSTNSRIKASLPTTIAKNSVKS- 2176 N I C N++ ++ LLF +T S++ L KN+ + Sbjct 2136 NKISACF-----NFIKWLFVLLFGWIKISADNKVIYTTEVASKLTCKLVALAFKNAFLTF 2190 Query 2177 ----VAK-LCLDVCINYVKSPKFSKLFTIVMWLLLLSICLGSL-TYVTAVLGVCLSSLGV 2230 VA+ C+ I + F+ ++ V++ +G L T+V + S+ + Sbjct 2191 KWSVVARGACIIATIFLLW---FNFIYANVIFSDFYLPKIGFLPTFVGKIAQWIKSTFSL 2247 Query 2231 PSYCDGVRELYINSSNVTTMDFCQGYFPCSVCLSGLDSLDSYPALETIQVTISSYK-LDL 2289 + CD LY +C G C CL+G D LD+Y A++ +Q +D Sbjct 2248 VTICD----LYSIQDVGFKNQYCNGSIACQFCLAGFDMLDNYKAIDVVQYEADRRAFVDY 2303 Query 2290 T-FLGLAAEWLLAYMLFTKFFYLLGLSAIMQAFFGYFASHFISNS--WLMWFIISIVQMA 2346 T L + E +++Y L+T +FY L +Q + F+ ++ W + ++S+ M Sbjct 2304 TGVLKIVIELIVSYALYTAWFYPLFALISIQILTTWLPELFMLSTLHWSVRLLVSLANML 2363 Query 2347 PVSAMVRMYIFFASFYYVWKSYVHIMDGCTSSTCMMCYKRNRATRVECTTIVNGVKRSFY 2406 P +R YI ASF ++ + H+ GC+ C+ CYKRNR+ RV+C+TIV G+ R + Sbjct 2364 PAHVFMRFYIIIASFIKLFSLFRHVAYGCSKPGCLFCYKRNRSLRVKCSTIVGGMIRYYD 2423 Query 2407 VYANGGRGFCKAHNWNCLNCDTFCAGSTFISDEVARDLSLQFKRPINPTDQSAYVVDSVT 2466 V ANGG GFC H WNC++CD++ G+TFI+ E A DLS + KRPI PTD + + V V Sbjct 2424 VMANGGTGFCSKHQWNCIDCDSYKPGNTFITVEAALDLSKELKRPIQPTDVAYHTVTDVK 2483 Query 2467 VKNGALHLYFDKAGQKTYERHPLSHFVNLDNLRANNTKGSLPINVIVFDGKSKCEESAAK 2526 + L++++ GQ+TY+ S FV+ NL + KG ++V+V + + +++ Sbjct 2484 QVGCYMRLFYERDGQRTYDDVNASLFVDYSNLLHSKVKGVPNMHVVVVENDA--DKANFL 2541 Query 2527 SASVYYSQLMCQPILLLDQALVSDVGDSTEVSVKMFDAYVDTFSATFSVPMEKLKALVAT 2586 +A+V+Y+Q + +PIL++D+ L++ T V+ MFD YVDTF + F V + L AL+AT Sbjct 2542 NAAVFYAQSLFRPILMVDKNLITTANTGTSVTETMFDVYVDTFLSMFDVDKKSLNALIAT 2601 Query 2587 AHSELAKGVALDGVLSTFVSAARQGV-VDTDVDTKDVIECLKLSHHSDIEVTGDSCNNFM 2645 AHS + +G + VL TF+S AR+ +D+DVDTK + + + + + +E+T +SCNN + Sbjct 2602 AHSSIKQGTQICKVLDTFLSCARKSCSIDSDVDTKCLADSVMSAVSAGLELTDESCNNLV 2661 Query 2646 LTYNKVENMTPRDLGACIDCNARHINAQVAKSHNVSLVWNVKDYMSLSEQLRKQIRSAAK 2705 TY K +N+ DLG I +A+H+ VAK VS +W+V + LS + +++ A Sbjct 2662 PTYLKGDNIVAADLGVLIQNSAKHVQGNVAKIAGVSCIWSVDAFNQLSSDFQHKLKKACC 2721 Query 2706 KNNIPFRLTCATTRQVVNVITTKISLKGGKVVSTWFKLLLKVTLLCVLAALFCYVIMPVH 2765 K + +LT V+V+TT SLKGG V S + + ++L+C + L+C +MP + Sbjct 2722 KTGLKLKLTYNKQMANVSVLTTPFSLKGGAVFSYFVYVCFLLSLVCFIG-LWC--LMPTY 2778 Query 2766 SLSVHDGYTNEIIGYKAIQDGVTRDIVSTDDCFANKHAGFDSWFSQRGG--SYRNDKNCP 2823 ++ D YK + +GV RD+ D CFANK FD W+ G Y N CP Sbjct 2779 TVHKSDFQLPVYTSYKVLDNGVIRDVSVEDVCFANKFEQFDQWYESTFGLSYYSNSMACP 2838 Query 2824 VVAAIITREIGFIVPGLPGTVLRALNGDFLHFLPRVFSAVGNICYTPSKLIEYSDFATSA 2883 +V A++ +++G V +P VLR LHF+ SA G CYTP I YS+F S Sbjct 2839 IVVAVVDQDLGSTVFNVPTKVLR-YGYHVLHFITHALSADGVQCYTPHSQISYSNFYASG 2897 Query 2884 CVLAAECTIFKDAMGKPVPYCYDTNLLEGSISYSELRPDTRYVLMDGS-IIQFPNTYLEG 2942 CVL++ CT+F A G P PYCY L++ + YS L P RY L + I+FP EG Sbjct 2898 CVLSSACTMFAMADGSPQPYCYTEGLMQNASLYSSLVPHVRYNLANAKGFIRFPEVLREG 2957 Query 2943 SVRVVTTFDAEYCRHGTCERSEVGVCLSTSGRWVLNNEHYRALPGVFCGVDAMNLIANIF 3002 VR+V T YCR G CE ++ G+C + +G WVLNN++YR+LPG FCG D +LI +F Sbjct 2958 LVRIVRTRSMSYCRVGLCEEADEGICFNFNGSWVLNNDYYRSLPGTFCGRDVFDLIYQLF 3017 Query 3003 TPLVQPVGALDVSASVVAGGIIAILVTCAAYYFMKFRRAFGEYNHVVAANALLFLMSFTI 3062 L QPV L ++AS +AG I+A++V YY +K +RAFG+Y +V N +++ ++F + Sbjct 3018 KGLAQPVDFLALTASSIAGAILAVIVVLVFYYLIKLKRAFGDYTSIVFVNVIVWCVNFMM 3077 Query 3063 LCLAPAYSFLPGVYSIFYLYLTFYFTNDVSFLAHLQWFAMFSPIVPFWITAIYVFCISLK 3122 L + Y L VY+I Y Y T YF +++S + HLQW M+ I+P W +Y+ + Sbjct 3078 LFVFQVYPTLSCVYAICYFYATLYFPSEISVIMHLQWLVMYGTIMPLWFCLLYISVVVSN 3137 Query 3123 HFHWFFSNYLKKRVMFNGVTFSTFEEAALCTFLLNKEMYLRLRSETLLPLTQYNRYLALY 3182 H W F+ +R+ + + TFEE AL TF++ K+ Y +L++ L +NRYL+LY Sbjct 3138 HAFWVFA--YCRRLGTSVRSDGTFEEMALTTFMITKDSYCKLKNS--LSDVAFNRYLSLY 3193 Query 3183 NKYKYFSGALDTTSYREAACCHLAKALNDFSNS-GADVLYQPPQTSITSAVLQSGFRKMA 3241 NKY+Y+SG +DT +YREAAC LAKA++ F+N+ G+DVLYQPP S++++ LQSG KM Sbjct 3194 NKYRYYSGKMDTAAYREAACSQLAKAMDTFTNNNGSDVLYQPPTASVSTSFLQSGIVKMV 3253 Query 3242 FPSGKVEGCMVQVTCGTTTLNGLWLDDTVYCPRHVVCTAEDMLNPNYDDLLIRKSNHSFL 3301 P+ KVE C+V VT G TLNGLWLDD VYCPRHV+C+A DM NP+Y +LL R ++ F Sbjct 3254 NPTSKVEPCIVSVTYGNMTLNGLWLDDKVYCPRHVICSASDMTNPDYTNLLCRVTSSDFT 3313 Query 3302 VQAGNVQLRVIGHSMQNCLLRLKVDTSNPKTPKYKFVRIQPGQTFSVLACYNGSPSGVYQ 3361 V + L V+ + MQ C+L L V N +TPKY F ++PG+TF+VLA YNG P G + Sbjct 3314 VLFDRLSLTVMSYQMQGCMLVLTVTLQNSRTPKYTFGVVKPGETFTVLAAYNGKPQGAFH 3373 Query 3362 CAMRPNHTIKGSFLNGSCGSVGFNIDYDCVSFCYMHHMELPTGVHAGTDLEGKFYGPFVD 3421 MR ++TIKGSFL GSCGSVG+ + DCV F YMH +EL TG H GTD G FYGP+ D Sbjct 3374 VTMRSSYTIKGSFLCGSCGSVGYVLMGDCVKFVYMHQLELSTGCHTGTDFNGDFYGPYKD 3433 Query 3422 RQTAQAAGTDTTITLNVLAWLYAAVINGDRWFLNRFTTTLNDFNLVAMKYNYEPLTQDHV 3481 Q Q D ++N +AWLYAA++N WF+ ++ DFN+ A+ + + D V Sbjct 3434 AQVVQLPVQDYIQSVNFVAWLYAAILNNCNWFVQSDKCSVEDFNVWALSNGFSQVKSDLV 3493 Query 3482 DILGPLSAQTGIAVLDMCAALKELLQNGMNGRTILGSTILEDEFTPFDVVRQCSGVTFQG 3541 + L++ TG+++ + AA+K L+NG GR I+GS EDE TP DV +Q +G+ Q Sbjct 3494 --IDALASMTGVSLETLLAAIKR-LKNGFQGRQIMGSCSFEDELTPSDVYQQLAGIKLQS 3550 Query 3542 KFKKIVKGTHHWMLL-TFLTSLLILVQSTQWSLFFFVYENAFLPFALGIMAVAACAMLLV 3600 K ++VKG W++ TFL S I+ +W++F +V N L + V + AMLLV Sbjct 3551 KRTRLVKGIVCWIMASTFLFS-CIITAFVKWTMFMYVTTN-MLSITFCALCVISLAMLLV 3608 Query 3601 KHKHAFLCLFLLPSLATVAYFN-MVYMPASWVMRIMTWLELADTSLSGYRLKDCVMYASA 3659 KHKH +L ++++P L T+ Y N +V ++ + WL S+ Y D V+Y Sbjct 3609 KHKHLYLTMYIIPVLFTLLYNNYLVVYKQTFRGYVYAWLSYYVPSVE-YTYTDEVIYGML 3667 Query 3660 LVL-LILMTARTVYDDAARRVWTLMNVITLVYKVYYGNSLDQAISMWALVISVTSNYSGV 3718 L++ ++ +T R++ D + + VI++V Y G++L++ I + ++ S+ Y+ Sbjct 3668 LLIGMVFVTLRSINHDLFSFIMFVGRVISVVSLWYMGSNLEEEILL--MLASLFGTYTWT 3725 Query 3719 VTTIMFLARAIV-FVCVEYYPLLFITGNTLQCIMLVYCFLGYCCCCYFGLFCLLNRYFRL 3777 M A+ I +V V L F ++ +++ Y F+GY CY+GLF L+N FR+ Sbjct 3726 TALSMAAAKVIAKWVAVNV--LYFTDIPQIKIVLVCYLFIGYIISCYWGLFSLMNSLFRM 3783 Query 3778 TLGVYDYLVSTQEFRYMNSQGLLPPKSSIDAFKLNIKLLGIGGKPCIKVATVQSKMSDVK 3837 LGVY+Y +S QE RYMN+ GL PPK+S +A LN KLLGIGG P I+V+ QSK++DVK Sbjct 3784 PLGVYNYKISVQELRYMNANGLRPPKNSFEALMLNFKLLGIGGVPIIEVSQFQSKLTDVK 3843 Query 3838 CTSVVLLSVLQQLRVESSSKLWAQCVQLHNDILLAKDTTEAFEKMVSLLSVLLSMQGAVD 3897 C +VVLL+ LQ L V S+SKLW C LHN+IL D AFEK+ LL VL + AVD Sbjct 3844 CANVVLLNCLQHLHVASNSKLWQYCSTLHNEILATSDLGVAFEKLAQLLIVLFANPAAVD 3903 Query 3898 ------INKLCEEMLDNRATLQAIASEFSSLPSYAAYATAQEAYEQAVSNGDS-EVVLKK 3950 I ++C++ + LQA+ SEF ++ S+ Y A++ ++A S+G + + LK+ Sbjct 3904 SKCLTSIEEVCDDYAKDNTVLQALQSEFVNMASFVEYEVAKKNLDEARSSGSANQQQLKQ 3963 Query 3951 LKKSLNVAKSEFDHDAAMQRKLEKMADQAMTQMYKQARSEDKRAKVTSAMQTMLFTMLRK 4010 L+K+ N+AKS ++ D A+ RKLE+MAD A+T MYK+AR DK++KV SA+QTMLF+M+RK Sbjct 3964 LEKACNIAKSAYERDRAVARKLERMADLALTNMYKEARINDKKSKVVSALQTMLFSMVRK 4023 Query 4011 LDNDALNNIINNARDGCVPLNIIPLTTAAKLMVVVPDYGTYKNTCDGNTFTYASALWEIQ 4070 LDN ALN+I++NA GCVPLN IP A L ++VPD Y D TYA +W+IQ Sbjct 4024 LDNQALNSILDNAVKGCVPLNAIPSLAANTLTIIVPDKSVYDQVVDNVYVTYAGNVWQIQ 4083 Query 4071 QVVDADSKIVQLSEINMDNSPNLAWPLIVTALRAN--SAVKLQNNELSPVALRQMSCAAG 4128 + D+D QL+EI S + WPL++ A R N SA LQNNEL P L+ +G Sbjct 4084 TIQDSDGTNKQLNEI----SDDCNWPLVIIANRHNEVSATVLQNNELMPAKLKTQVVNSG 4139 Query 4129 TTQTACTDDNALAYYNNAKGGRFVLALLSDHQDLKWARFPKSDGTGTIYTELEPPCRFVT 4188 QT T YYNN+ G+ V A+LSD LK+ + K DG + EL+PPC+F Sbjct 4140 PDQTCNTPTQ--CYYNNSNNGKIVYAILSDVDGLKYTKILKDDGNFVV-LELDPPCKFTV 4196 Query 4189 DTPKGPKVKYLYFIKGLNNLNRGMVLGSLAATVRLQAGNATEVPANSTVLSFCAFAVDPA 4248 KG K+KYLYF+KG N L RG V+G++++TVRLQAG ATE +NS++LS CAF+VDP Sbjct 4197 QDVKGLKIKYLYFVKGCNTLARGWVVGTISSTVRLQAGTATEYASNSSILSLCAFSVDPK 4256 Query 4249 KAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPEANMDQESFGGASCCLYCRCHIDHP 4308 K Y D++ GG PI NCVKMLC H GTG AITV P+A +Q+S+GGAS C+YCR ++HP Sbjct 4257 KTYLDFIQQGGTPIANCVKMLCDHAGTGMAITVKPDATTNQDSYGGASVCIYCRARVEHP 4316 Query 4309 NPKGFCDLKGKYVQIPTTCANDPVGFTLRNTVCTVCGMWKGYGCSCDQLREPMMQSADAS 4368 + G C L+GK+VQ+P DPV + L + VC VCG W+ CSC + +QS D + Sbjct 4317 DVDGLCKLRGKFVQVPVG-IKDPVSYVLTHDVCQVCGFWRDGSCSCVS-TDTTVQSKD-T 4373 Query 4369 TFLN 4372 FLN Sbjct 4374 NFLN 4377 Range 2: 1273 to 1427 Score:85.9 bits(211), Expect:1e-14, Method:Compositional matrix adjust., Identities:51/155(33%), Positives:78/155(50%), Gaps:2/155(1%) Query 1007 LTDNVAIKCIDIVKEAQSAKPTVIVNAANTHLKHGGGVAGALNKATNGAMQNESDEYIRQ 1066 +T NV DI+K ++ K V+VN AN H+ HGGGVA A+ A E+ + ++ Sbjct 1273 ITPNVCFVKGDIIKVSKRVKAEVVVNPANGHMAHGGGVAKAIAVAAGQQFVKETTDMVKS 1332 Query 1067 NGPLTVGGSCLLSGHNLAEKCLHVVGPN--LNAGEDVQLLKRAYENFNSQDVLLAPLLSA 1124 G G + +G L + L+VVGP+ + LL+R Y++ N D ++ L+SA Sbjct 1333 KGVCATGDCYVSTGGKLCKTVLNVVGPDARTQGKQSYALLERVYKHLNKYDCVVTTLISA 1392 Query 1125 GIFGAKPLQSLKMCVEIVRTQVYLAVNDKSLYDQI 1159 GIF SL + QV L N++ +D I Sbjct 1393 GIFSVPSDVSLTYLLGTAEKQVVLVSNNQEDFDLI 1427 Range 3: 748 to 1016 Score:73.9 bits(180), Expect:4e-11, Method:Compositional matrix adjust., Identities:75/284(26%), Positives:129/284(45%), Gaps:24/284(8%) Query 714 RGLYRQCIRGKEQLQLLMP---LKAPKEVTFLEGDAHDTVLTSEEVVLKSGELEALETPI 770 RGL + L MP KA ++ +L+G D L V + + L TP Sbjct 748 RGLLHSSQLPLDVYDLTMPSQVQKAKQKPIYLKGSGSDFSLADSVVEVVTTSL----TPC 803 Query 771 DSFTSGAVVGTPVCINGLMLLELENKEQYCALSPGLLAT-NNVFRLKGGAPVKGVTFGED 829 ++ V +CI + + + Y + G + + +R+ + VTF E Sbjct 804 -GYSEPPKVADKICIVDNVYMAKAGDKYYPVVVDGHVGLLDQAWRVPCAG--RRVTFKEQ 860 Query 830 -TVLEVQGY-KNVKITFELDVRVDKVLNEKCSVYTVESGTEVTEFACVVAEAVVKTLQPV 887 TV E+ K +K+ +ELD + +LN C V+ V+ ++ EF VV +A+ + L P Sbjct 861 PTVNEIASTPKTIKVFYELDKDFNTILNTACGVFEVDDTVDMEEFYAVVVDAIEEKLSPC 920 Query 888 SDLL---TPMGIDLDEWSVATFYLFDDAGEEKLSSRMYCSFYPPDEEEDCEECEDEEETC 944 +L + L + + +LFD+AGEE L+S++YC+F P++++ EE EE+ Sbjct 921 KELEGVGAKVSAFLQKLEDNSLFLFDEAGEEVLASKLYCAFTAPEDDDFLEESGVEEDDV 980 Query 945 EHEYGTEDDYKGLPLEFGASTETPHVEEEEEEEDWLDDAIEAEP 988 E E L ++ E E+EE + L+D ++ P Sbjct 981 EGE--------ETDLTVTSAGEPCVASEQEESSEILEDTLDDGP 1016 >RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Host translation inhibitor nsp1; Short=nsp1; AltName: Full=p28; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p65; Contains: RecName: Full=Papain-like proteinase nsp3; Short=PL-PRO; AltName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=p210; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; AltName: Full=Peptide HD2; AltName: Full=p44; Contains: RecName: Full=3C-like proteinase nsp5; Short=3CL-PRO; Short=3CLp; AltName: Full=M-PRO; AltName: Full=nsp5; AltName: Full=p27; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; AltName: Full=p10; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; AltName: Full=p22; Contains: RecName: Full=Viral protein genome-linked nsp9; AltName: Full=Non-structural protein 9; Short=nsp9; AltName: Full=RNA-capping enzyme subunit nsp9; AltName: Full=p12; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; AltName: Full=p15; Contains: RecName: Full=RNA-directed RNA polymerase nsp12; Short=Pol; Short=RdRp; AltName: Full=nsp12; AltName: Full=p100; Contains: RecName: Full=Helicase nsp13; Short=Hel; AltName: Full=nsp13; AltName: Full=p67; Contains: RecName: Full=Guanine-N7 methyltransferase nsp14; Short=ExoN; AltName: Full=nsp14; Contains: RecName: Full=Uridylate-specific endoribonuclease nsp15; AltName: Full=NendoU; AltName: Full=nsp15; AltName: Full=p35; Contains: RecName: Full=2'-O-methyltransferase; AltName: Full=nsp16 [Bovine enteric coronavirus (strain 98TXSF-110-ENT)] Sequence ID: P0C6W7.1 Length: 7094 Range 1: 1565 to 4377 Score:1880 bits(4869), Expect:0.0, Method:Compositional matrix adjust., Identities:1093/2884(38%), Positives:1626/2884(56%), Gaps:121/2884(4%) Query 1539 IKVFTTVDNTNLHTHIVDMSMTYGQQFGPTYLDGADVTKIKPHVNHEGKTFFVLPSDDTL 1598 + + TVD N V + ++G+ G + DG +VTK K +N++GK FF D L Sbjct 1565 VDILLTVDGVNFTNRFVPVGESFGKSLGNVFCDGVNVTKHKCDINYKGKVFFQF---DNL 1621 Query 1599 RSE---AFEYYHTIDESFLGRYMSALNHTKKWKFPQVGGLTSIKWADNNCYLSSVLLALQ 1655 SE A D+ L Y + L + KW+ G + K A+NNC+++ L LQ Sbjct 1622 SSEDLKAVRSSFNFDQKELLAYYNMLVNCSKWQVVFNGKYFTFKQANNNCFVNVSCLMLQ 1681 Query 1656 QVEVKFNAPALQEAYYRARAGDAANFCALILAYSNKTVGELGDVRETMTHLLQHANLESA 1715 + +KF QEA+ R+G A F +L+LA G+ D R+ + + +L A Sbjct 1682 SLNLKFKIVQWQEAWLEFRSGRPARFVSLVLAKGGFKFGDPADSRDFLRVVFSQVDLTGA 1741 Query 1716 KRVLNVVCKHCGQKTTTLKGVEAVMYMGTLSYDELKTGVSIPCVCGRNATQYLVQQESSF 1775 + CK CG K GV+AVM+ GTLS ++L+ G ++ C CG+ + V+ + F Sbjct 1742 ICDFEIACK-CGVKQEQRTGVDAVMHFGTLSREDLEIGYTVDCSCGKKLI-HCVRFDVPF 1799 Query 1776 VMMSAPPAEYKLQQGAFLCANEYTGNYQCGHYTHITAKETLYRVDGAHLTKMSEYKGPVT 1835 ++ S PA KL +G AN + G+ + GHY H+ +++ D +++ K+++ G ++ Sbjct 1800 LICSNTPASVKLPKGVG-SANIFKGD-KVGHYVHVKCEQSYQLYDASNVKKVTDVTGNLS 1857 Query 1836 DVFY-KETSYTTAIKPVSYKLDGVTYTEIEPKLDGYYKKGNAYYTEQPIDL-VPTQPMPN 1893 D Y K T +Y LD V E P L YY G YYT++ I T + Sbjct 1858 DCLYLKNLKQTFKSVLTTYYLDDVKKIEYNPDLSQYYCDGGKYYTQRIIKAQFKTFEKVD 1917 Query 1894 ASFDNFKLTCSNTKFADDLNQMTGFKKPAS-RELTVTFFPDLNGDVVAIDYRHYSTSFKK 1952 + NFKL D LN GF E VT +P GDVV Y +++ Sbjct 1918 GVYTNFKLI--GHTICDILNAKLGFDSSKEFVEYKVTEWPTATGDVVLATDDLYVKRYER 1975 Query 1953 GAKLVHKPILW--HINQTTNKTTYKPNIWCLRCLWSTKPVDTSNSFEVLVVEDTQGMDNL 2010 G KP++W H + N TY ++ + N F+VL V+D ++ Sbjct 1976 GCITFGKPVIWLSHEQASLNSLTY----------FNRPLLVDENKFDVLKVDDVDDGGDI 2025 Query 2011 ACESQTTTSEEV--VENPTVQKEIIECDVKTTEVVGNVILKPSEEGVKVTQELGHEDLMA 2068 + ES S+E+ ++ V+K +V +VI+ +K + L D+ Sbjct 2026 S-ESDAKESKEINIIKLSGVKKPF--------KVEDSVIVNDDTSEIKYVKSLSIVDVYD 2076 Query 2069 AYVEETSITIKKPNELSLALGLKTLA--THGAAAINSVPWSKI-LAYVKPFLGQTAVITS 2125 ++ ++ N LS+A+ + T+ + S+P + L +KP + Sbjct 2077 MWLTGCRYVVRTANALSMAVNVPTIRKFIKFGMTLVSIPIDLLNLREIKPVFNVVKAV-R 2135 Query 2126 NCIKKCVQRVFSNYMPYVITLLF--------QLCTFTKSTNSRIKASLPTTIAKNSVKS- 2176 N I C N++ ++ LLF +T S++ L KN+ + Sbjct 2136 NKISACF-----NFIKWLFVLLFGWIKISADNKVIYTTEVASKLTCKLVALAFKNAFLTF 2190 Query 2177 ----VAK-LCLDVCINYVKSPKFSKLFTIVMWLLLLSICLGSL-TYVTAVLGVCLSSLGV 2230 VA+ C+ I + F+ ++ V++ +G L T+V + S+ + Sbjct 2191 KWSVVARGACIIATIFLLW---FNFIYANVIFSDFYLPKIGFLPTFVGKIAQWIKSTFSL 2247 Query 2231 PSYCDGVRELYINSSNVTTMDFCQGYFPCSVCLSGLDSLDSYPALETIQVTISSYK-LDL 2289 + CD LY +C G C CL+G D LD+Y A++ +Q +D Sbjct 2248 VTICD----LYSIQDVGFKNQYCNGSIACQFCLAGFDMLDNYKAIDVVQYEADRRAFVDY 2303 Query 2290 T-FLGLAAEWLLAYMLFTKFFYLLGLSAIMQAFFGYFASHFISNS--WLMWFIISIVQMA 2346 T L + E +++Y L+T +FY L +Q + F+ ++ W + ++S+ M Sbjct 2304 TGVLKIVIELIVSYALYTAWFYPLFALISIQILTTWLPELFMLSTLHWSVRLLVSLANML 2363 Query 2347 PVSAMVRMYIFFASFYYVWKSYVHIMDGCTSSTCMMCYKRNRATRVECTTIVNGVKRSFY 2406 P +R YI ASF ++ + H+ GC+ C+ CYKRNR+ RV+C+TIV G+ R + Sbjct 2364 PAHVFMRFYIIIASFIKLFILFRHVAYGCSKPGCLFCYKRNRSLRVKCSTIVGGMIRYYD 2423 Query 2407 VYANGGRGFCKAHNWNCLNCDTFCAGSTFISDEVARDLSLQFKRPINPTDQSAYVVDSVT 2466 V ANGG GFC H WNC++CD++ G+TFI+ E A DLS + KRPI PTD + + V V Sbjct 2424 VMANGGTGFCSKHQWNCIDCDSYKPGNTFITVEAALDLSKELKRPIQPTDVAYHTVTDVK 2483 Query 2467 VKNGALHLYFDKAGQKTYERHPLSHFVNLDNLRANNTKGSLPINVIVFDGKSKCEESAAK 2526 + L++++ GQ+TY+ S FV+ NL + KG ++V+V + + +++ Sbjct 2484 QVGCYMRLFYERDGQRTYDDVNASLFVDYSNLLHSKVKGVPNMHVVVVENDA--DKANFL 2541 Query 2527 SASVYYSQLMCQPILLLDQALVSDVGDSTEVSVKMFDAYVDTFSATFSVPMEKLKALVAT 2586 +A+V+Y+Q + +PIL++D+ L++ T V+ MFD YVDTF + F V + L AL+AT Sbjct 2542 NAAVFYAQSLFRPILMVDKNLITTANTGTSVTETMFDVYVDTFLSMFDVDKKSLNALIAT 2601 Query 2587 AHSELAKGVALDGVLSTFVSAARQGV-VDTDVDTKDVIECLKLSHHSDIEVTGDSCNNFM 2645 AHS + +G + VL TF+S AR+ +D+DVDTK + + + + + +E+T +SCNN + Sbjct 2602 AHSSIKQGTQICKVLDTFLSCARKSCSIDSDVDTKCLADSVMSAVSAGLELTDESCNNLV 2661 Query 2646 LTYNKVENMTPRDLGACIDCNARHINAQVAKSHNVSLVWNVKDYMSLSEQLRKQIRSAAK 2705 TY K +N+ DLG I +A+H+ VAK VS +W+V + LS + +++ A Sbjct 2662 PTYLKGDNIVAADLGVLIQNSAKHVQGNVAKIAGVSCIWSVDAFNQLSSDFQHKLKKACC 2721 Query 2706 KNNIPFRLTCATTRQVVNVITTKISLKGGKVVSTWFKLLLKVTLLCVLAALFCYVIMPVH 2765 K + +LT V+V+TT SLKGG V S + + ++L+C + L+C +MP + Sbjct 2722 KTGLKLKLTYNKQMANVSVLTTPFSLKGGAVFSYFVYVCFLLSLVCFIG-LWC--LMPTY 2778 Query 2766 SLSVHDGYTNEIIGYKAIQDGVTRDIVSTDDCFANKHAGFDSWFSQRGG--SYRNDKNCP 2823 ++ D YK + +GV RD+ D CFANK FD W+ G Y N CP Sbjct 2779 TVHKSDFQLPVYASYKVLDNGVIRDVSVEDVCFANKFEQFDQWYESTFGLSYYSNSMACP 2838 Query 2824 VVAAIITREIGFIVPGLPGTVLRALNGDFLHFLPRVFSAVGNICYTPSKLIEYSDFATSA 2883 +V A++ +++G V +P VLR LHF+ SA G CYTP I YS+F S Sbjct 2839 IVVAVVDQDLGSTVFNVPTKVLR-YGYHVLHFITHALSADGVQCYTPHSQISYSNFYASG 2897 Query 2884 CVLAAECTIFKDAMGKPVPYCYDTNLLEGSISYSELRPDTRYVLMDGS-IIQFPNTYLEG 2942 CVL++ CT+F A G P PYCY L++ + YS L P RY L + I+FP EG Sbjct 2898 CVLSSACTMFAMADGSPQPYCYTEGLMQNASLYSSLVPHVRYNLANAKGFIRFPEVLREG 2957 Query 2943 SVRVVTTFDAEYCRHGTCERSEVGVCLSTSGRWVLNNEHYRALPGVFCGVDAMNLIANIF 3002 VR+V T YCR G CE ++ G+C + +G WVLNN++YR+LPG FCG D +LI +F Sbjct 2958 LVRIVRTRSMSYCRVGLCEEADEGICFNFNGSWVLNNDYYRSLPGTFCGRDVFDLIYQLF 3017 Query 3003 TPLVQPVGALDVSASVVAGGIIAILVTCAAYYFMKFRRAFGEYNHVVAANALLFLMSFTI 3062 L QPV L ++AS +AG I+A++V YY +K +RAFG+Y +V N +++ ++F + Sbjct 3018 KGLAQPVDFLALTASSIAGAILAVIVVLVFYYLIKLKRAFGDYTSIVFVNVIVWCVNFMM 3077 Query 3063 LCLAPAYSFLPGVYSIFYLYLTFYFTNDVSFLAHLQWFAMFSPIVPFWITAIYVFCISLK 3122 L + Y L VY+I Y Y T YF +++S + HLQW M+ I+P W +Y+ + Sbjct 3078 LFVFQVYPTLSCVYAICYFYATLYFPSEISVIMHLQWLVMYGTIMPLWFCLLYISVVVSN 3137 Query 3123 HFHWFFSNYLKKRVMFNGVTFSTFEEAALCTFLLNKEMYLRLRSETLLPLTQYNRYLALY 3182 H W F+ +R+ + + TFEE AL TF++ K+ Y +L++ L +NRYL+LY Sbjct 3138 HAFWVFA--YCRRLGTSVRSDGTFEEMALTTFMITKDSYCKLKNS--LSDVAFNRYLSLY 3193 Query 3183 NKYKYFSGALDTTSYREAACCHLAKALNDFSNS-GADVLYQPPQTSITSAVLQSGFRKMA 3241 NKY+Y+SG +DT +YREAAC LAKA++ F+N+ G+DVLYQPP S++++ LQSG KM Sbjct 3194 NKYRYYSGKMDTAAYREAACSQLAKAMDTFTNNNGSDVLYQPPTASVSTSFLQSGIVKMV 3253 Query 3242 FPSGKVEGCMVQVTCGTTTLNGLWLDDTVYCPRHVVCTAEDMLNPNYDDLLIRKSNHSFL 3301 P+ KVE C+V VT G TLNGLWLDD VYCPRHV+C+A DM NP+Y +LL R ++ F Sbjct 3254 NPTSKVEPCIVSVTYGNMTLNGLWLDDKVYCPRHVICSASDMTNPDYTNLLCRVTSSDFT 3313 Query 3302 VQAGNVQLRVIGHSMQNCLLRLKVDTSNPKTPKYKFVRIQPGQTFSVLACYNGSPSGVYQ 3361 V + L V+ + MQ C+L L V N +TPKY F ++PG+TF+VLA YNG P G + Sbjct 3314 VLFDRLSLTVMSYQMQGCMLVLTVTLQNSRTPKYTFGVVKPGETFTVLAAYNGKPQGAFH 3373 Query 3362 CAMRPNHTIKGSFLNGSCGSVGFNIDYDCVSFCYMHHMELPTGVHAGTDLEGKFYGPFVD 3421 MR ++TIKGSFL GSCGSVG+ + DCV F YMH +EL TG H GTD G FYGP+ D Sbjct 3374 VTMRSSYTIKGSFLCGSCGSVGYVLMGDCVKFVYMHQLELSTGCHTGTDFNGDFYGPYKD 3433 Query 3422 RQTAQAAGTDTTITLNVLAWLYAAVINGDRWFLNRFTTTLNDFNLVAMKYNYEPLTQDHV 3481 Q Q D ++N +AWLYAA++N WF+ ++ DFN+ A+ + + D V Sbjct 3434 AQVVQLPVQDYIQSVNFVAWLYAAILNNCNWFVQSDKCSVEDFNVWALSNGFSQVKSDLV 3493 Query 3482 DILGPLSAQTGIAVLDMCAALKELLQNGMNGRTILGSTILEDEFTPFDVVRQCSGVTFQG 3541 + L++ TG+++ + AA+K L+NG GR I+GS EDE TP DV +Q +G+ Q Sbjct 3494 --IDALASMTGVSLETLLAAIKR-LKNGFQGRQIMGSCSFEDELTPSDVYQQLAGIKLQS 3550 Query 3542 KFKKIVKGTHHWMLL-TFLTSLLILVQSTQWSLFFFVYENAFLPFALGIMAVAACAMLLV 3600 K ++VKG W++ TFL S I+ +W++F +V N L + V + AMLLV Sbjct 3551 KRTRLVKGIVCWIMASTFLFS-CIITAFVKWTMFMYVTTN-MLSITFCALCVISLAMLLV 3608 Query 3601 KHKHAFLCLFLLPSLATVAYFN-MVYMPASWVMRIMTWLELADTSLSGYRLKDCVMYASA 3659 KHKH +L ++++P L T+ Y N +V ++ + WL S+ Y D V+Y Sbjct 3609 KHKHLYLTMYIIPVLFTLLYNNYLVVYKQTFRGYVYAWLSYYVPSVE-YTYTDEVIYGML 3667 Query 3660 LVL-LILMTARTVYDDAARRVWTLMNVITLVYKVYYGNSLDQAISMWALVISVTSNYSGV 3718 L++ ++ +T R++ D + + VI++V Y G++L++ I + ++ S+ Y+ Sbjct 3668 LLIGMVFVTLRSINHDLFSFIMFVGRVISVVSLWYMGSNLEEEILL--MLASLFGTYTWT 3725 Query 3719 VTTIMFLARAIV-FVCVEYYPLLFITGNTLQCIMLVYCFLGYCCCCYFGLFCLLNRYFRL 3777 M A+ I +V V L F ++ +++ Y F+GY CY+GLF L+N FR+ Sbjct 3726 TALSMAAAKVIAKWVAVNV--LYFTDIPQIKIVLVCYLFIGYIISCYWGLFSLMNSLFRM 3783 Query 3778 TLGVYDYLVSTQEFRYMNSQGLLPPKSSIDAFKLNIKLLGIGGKPCIKVATVQSKMSDVK 3837 LGVY+Y +S QE RYMN+ GL PPK+S +A LN KLLGIGG P I+V+ QSK++DVK Sbjct 3784 PLGVYNYKISVQELRYMNANGLRPPKNSFEALMLNFKLLGIGGVPIIEVSQFQSKLTDVK 3843 Query 3838 CTSVVLLSVLQQLRVESSSKLWAQCVQLHNDILLAKDTTEAFEKMVSLLSVLLSMQGAVD 3897 C +VVLL+ LQ L V S+SKLW C LHN+IL D AFEK+ LL VL + AVD Sbjct 3844 CANVVLLNCLQHLHVASNSKLWQYCSTLHNEILATSDLGVAFEKLAQLLIVLFANPAAVD 3903 Query 3898 ------INKLCEEMLDNRATLQAIASEFSSLPSYAAYATAQEAYEQAVSNGDS-EVVLKK 3950 I ++C++ + LQA+ SEF ++ S+ Y A++ ++A S+G + + LK+ Sbjct 3904 SKCLTSIEEVCDDYAKDNTVLQALQSEFVNMASFVEYEVAKKNLDEARSSGSANQQQLKQ 3963 Query 3951 LKKSLNVAKSEFDHDAAMQRKLEKMADQAMTQMYKQARSEDKRAKVTSAMQTMLFTMLRK 4010 L+K+ N+AKS ++ D A+ RKLE+MAD A+T MYK+AR DK++KV SA+QTMLF+M+RK Sbjct 3964 LEKACNIAKSAYERDRAVARKLERMADLALTNMYKEARINDKKSKVVSALQTMLFSMVRK 4023 Query 4011 LDNDALNNIINNARDGCVPLNIIPLTTAAKLMVVVPDYGTYKNTCDGNTFTYASALWEIQ 4070 LDN ALN+I++NA GCVPLN IP A L ++VPD Y D TYA +W+IQ Sbjct 4024 LDNQALNSILDNAVKGCVPLNAIPSLAANTLTIIVPDKSVYDQVVDNVYVTYAGNVWQIQ 4083 Query 4071 QVVDADSKIVQLSEINMDNSPNLAWPLIVTALRAN--SAVKLQNNELSPVALRQMSCAAG 4128 + D+D QL+EI S + WPL++ A R N SA LQNNEL P L+ +G Sbjct 4084 TIQDSDGTNKQLNEI----SDDCNWPLVIIANRHNEVSATVLQNNELMPAKLKTQVVNSG 4139 Query 4129 TTQTACTDDNALAYYNNAKGGRFVLALLSDHQDLKWARFPKSDGTGTIYTELEPPCRFVT 4188 QT T YYNN+ G+ V A+LSD LK+ + K DG + EL+PPC+F Sbjct 4140 PDQTCNTPTQ--CYYNNSNNGKIVYAILSDVDGLKYTKILKDDGNFVV-LELDPPCKFTV 4196 Query 4189 DTPKGPKVKYLYFIKGLNNLNRGMVLGSLAATVRLQAGNATEVPANSTVLSFCAFAVDPA 4248 KG K+KYLYF+KG N L RG V+G++++TVRLQAG ATE +NS++LS CAF+VDP Sbjct 4197 QDVKGLKIKYLYFVKGCNTLARGWVVGTISSTVRLQAGTATEYASNSSILSLCAFSVDPK 4256 Query 4249 KAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPEANMDQESFGGASCCLYCRCHIDHP 4308 K Y D++ GG PI NCVKMLC H GTG AITV P+A +Q+S+GGAS C+YCR ++HP Sbjct 4257 KTYLDFIQQGGTPIANCVKMLCDHAGTGMAITVKPDATTNQDSYGGASVCIYCRARVEHP 4316 Query 4309 NPKGFCDLKGKYVQIPTTCANDPVGFTLRNTVCTVCGMWKGYGCSCDQLREPMMQSADAS 4368 + G C L+GK+VQ+P DPV + L + VC VCG W+ CSC + +QS D + Sbjct 4317 DVDGLCKLRGKFVQVPVG-IKDPVSYVLTHDVCQVCGFWRDGSCSCVS-TDTTVQSKD-T 4373 Query 4369 TFLN 4372 FLN Sbjct 4374 NFLN 4377 Range 2: 1273 to 1427 Score:85.9 bits(211), Expect:1e-14, Method:Compositional matrix adjust., Identities:51/155(33%), Positives:78/155(50%), Gaps:2/155(1%) Query 1007 LTDNVAIKCIDIVKEAQSAKPTVIVNAANTHLKHGGGVAGALNKATNGAMQNESDEYIRQ 1066 +T NV DI+K ++ K V+VN AN H+ HGGGVA A+ A E+ + ++ Sbjct 1273 ITPNVCFVKGDIIKVSKRVKAEVVVNPANGHMAHGGGVAKAIAVAAGQQFVKETTDMVKS 1332 Query 1067 NGPLTVGGSCLLSGHNLAEKCLHVVGPN--LNAGEDVQLLKRAYENFNSQDVLLAPLLSA 1124 G G + +G L + L+VVGP+ + LL+R Y++ N D ++ L+SA Sbjct 1333 KGVCATGDCYVSTGGKLCKTVLNVVGPDARTQGKQSYALLERVYKHLNKYDCVVTTLISA 1392 Query 1125 GIFGAKPLQSLKMCVEIVRTQVYLAVNDKSLYDQI 1159 GIF SL + QV L N++ +D I Sbjct 1393 GIFSVPSDVSLTYLLGTAEKQVVLVSNNQEDFDLI 1427 Range 3: 748 to 1016 Score:73.6 bits(179), Expect:5e-11, Method:Compositional matrix adjust., Identities:75/284(26%), Positives:129/284(45%), Gaps:24/284(8%) Query 714 RGLYRQCIRGKEQLQLLMP---LKAPKEVTFLEGDAHDTVLTSEEVVLKSGELEALETPI 770 RGL + L MP KA ++ +L+G D L V + + L TP Sbjct 748 RGLLHSSQLPLDVYDLTMPSQVQKAKQKPIYLKGSGSDFSLADSVVEVVTTSL----TPC 803 Query 771 DSFTSGAVVGTPVCINGLMLLELENKEQYCALSPGLLAT-NNVFRLKGGAPVKGVTFGED 829 ++ V +CI + + + Y + G + + +R+ + VTF E Sbjct 804 -GYSEPPKVADKICIVDNVYMAKAGDKYYPVVVDGHVGLLDQAWRVPCAG--RRVTFKEQ 860 Query 830 -TVLEVQGY-KNVKITFELDVRVDKVLNEKCSVYTVESGTEVTEFACVVAEAVVKTLQPV 887 TV E+ K +K+ +ELD + +LN C V+ V+ ++ EF VV +A+ + L P Sbjct 861 PTVNEIASTPKTIKVFYELDKDFNTILNTACGVFEVDDTVDMEEFYAVVIDAIEEKLSPC 920 Query 888 SDLL---TPMGIDLDEWSVATFYLFDDAGEEKLSSRMYCSFYPPDEEEDCEECEDEEETC 944 +L + L + + +LFD+AGEE L+S++YC+F P++++ EE EE+ Sbjct 921 KELEGVGAKVSAFLQKLEDNSLFLFDEAGEEVLASKLYCAFTAPEDDDFLEESGVEEDDV 980 Query 945 EHEYGTEDDYKGLPLEFGASTETPHVEEEEEEEDWLDDAIEAEP 988 E E L ++ E E+EE + L+D ++ P Sbjct 981 EGE--------ETDLTVTSAGEPCVASEQEESSEILEDTLDDGP 1016 >RecName: Full=Replicase polyprotein 1a; Short=pp1a; AltName: Full=ORF1a polyprotein; Contains: RecName: Full=Non-structural protein 1; Short=nsp1; AltName: Full=p28; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p65; Contains: RecName: Full=Papain-like protease nsp3; Short=PL-PRO; AltName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=PL1-PRO/PL2-PRO; AltName: Full=PL1/PL2; AltName: Full=PL2-PRO; AltName: Full=Papain-like proteinases 1/2; AltName: Full=p210; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; AltName: Full=Peptide HD2; AltName: Full=p44; Contains: RecName: Full=3C-like proteinase nsp5; Short=3CL-PRO; Short=3CLp; AltName: Full=M-PRO; AltName: Full=nsp5; AltName: Full=p27; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; AltName: Full=p10; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; AltName: Full=p22; Contains: RecName: Full=RNA-capping enzyme subunit nsp9; AltName: Full=Non-structural protein 9; Short=nsp9; AltName: Full=p12; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; AltName: Full=p15; Contains: RecName: Full=Non-structural protein 11; Short=nsp11 [Human coronavirus OC43] Sequence ID: P0C6U7.1 Length: 4383 Range 1: 1565 to 4381 Score:1878 bits(4864), Expect:0.0, Method:Compositional matrix adjust., Identities:1088/2894(38%), Positives:1613/2894(55%), Gaps:133/2894(4%) Query 1539 IKVFTTVDNTNLHTHIVDMSMTYGQQFGPTYLDGADVTKIKPHVNHEGKTFFVLPSDDTL 1598 + + TVD N V + ++G+ G + DG +VTK K +N++GK FF D L Sbjct 1565 VDILLTVDGVNFTNRFVPVGESFGKSLGNVFCDGVNVTKHKCDINYKGKVFFQF---DNL 1621 Query 1599 RSE---AFEYYHTIDESFLGRYMSALNHTKKWKFPQVGGLTSIKWADNNCYLSSVLLALQ 1655 SE A D+ L Y + L + KW+ G + K A+NNC+++ L LQ Sbjct 1622 SSEDLKAVRSSFNFDQKELLAYYNMLVNCFKWQVVVNGKYFTFKQANNNCFVNVSCLMLQ 1681 Query 1656 QVEVKFNAPALQEAYYRARAGDAANFCALILAYSNKTVGELGDVRETMTHLLQHANLESA 1715 + + F QEA+ R+G A F AL+LA G+ D R+ + + +L A Sbjct 1682 SLHLTFKIVQWQEAWLEFRSGRPARFVALVLAKGGFKFGDPADSRDFLRVVFSQVDLTGA 1741 Query 1716 KRVLNVVCKHCGQKTTTLKGVEAVMYMGTLSYDELKTGVSIPCVCGRNATQYLVQQESSF 1775 + CK CG K G++AVM+ GTLS ++L+ G ++ C CG+ + V+ + F Sbjct 1742 ICDFEIACK-CGVKQEQRTGLDAVMHFGTLSREDLEIGYTVDCSCGKKLI-HCVRFDVPF 1799 Query 1776 VMMSAPPAEYKLQQGAFLCANEYTGNYQCGHYTHITAKETLYRVDGAHLTKMSEYKGPVT 1835 ++ S PA KL +G AN + G+ GHY H+ +++ D +++ K+++ G ++ Sbjct 1800 LICSNTPASVKLPKGVG-SANIFIGD-NVGHYVHVKCEQSYQLYDASNVKKVTDVTGKLS 1857 Query 1836 DVFY-KETSYTTAIKPVSYKLDGVTYTEIEPKLDGYYKKGNAYYTEQPIDL-VPTQPMPN 1893 D Y K T +Y LD V E +P L YY G YYT++ I T + Sbjct 1858 DCLYLKNLKQTFKSVLTTYYLDDVKKIEYKPDLSQYYCDGGKYYTQRIIKAQFKTFEKVD 1917 Query 1894 ASFDNFKLTCSNTKFADDLNQMTGFKKPAS-RELTVTFFPDLNGDVVAIDYRHYSTSFKK 1952 + NFKL D LN GF E +T +P GDVV + Y +++ Sbjct 1918 GVYTNFKLIGHTV--CDSLNSKLGFDSSKEFVEYKITEWPTATGDVVLANDDLYVKRYER 1975 Query 1953 GAKLVHKPILW--HINQTTNKTTY--KPNIWCLRCLWSTKPVDTSNSFEVLVVEDTQGMD 2008 G KP++W H + N TY +P + VD + + V + D Sbjct 1976 GCITFGKPVIWLSHEKASLNSLTYFNRPLL-----------VDDNKFDVLKVDDVDDSGD 2024 Query 2009 NLACESQTTTSEEVVENPTVQKEIIECDVKTTEVVGNVILKPSEEGVKVTQELGHEDLMA 2068 + ++ T +++ V+K +V +VI+ K + L D+ Sbjct 2025 SSESGAKETKEINIIKLSGVKKPF--------KVEDSVIVNDDTSETKYVKSLSIVDVYD 2076 Query 2069 AYVEETSITIKKPNELSLALGLKTLA--THGAAAINSVPWSKI-LAYVKPFLGQTAVI-- 2123 ++ ++ N LS A+ + T+ + S+P + L +KP + + Sbjct 2077 MWLTGCKYVVRTANALSRAVNVPTIRKFIKFGMTLVSIPIDLLNLREIKPAVNVVKAVRN 2136 Query 2124 -TSNCIKKCVQRVFSNYMPYVITLLFQLCTFTKSTNSRIKASLPTTIAKNSVKSVAKLCL 2182 TS C N++ ++ LLF + K T IA + L Sbjct 2137 KTSACF---------NFIKWLFVLLFGWIKISADN----KVIYTTEIASKLTCKLVALAF 2183 Query 2183 DVCINYVKSPKFSKLFTIVMWLLLLSICLGSLTYVTAVLG-VCLSSLG-VPSYCDGVREL 2240 K ++ I+ + LL + Y + L +G +P++ + + Sbjct 2184 KNAFLTFKWSMVARGACIIATIFLLWF---NFIYANVIFSDFYLPKIGFLPTFVGKIAQW 2240 Query 2241 YINSSNVTTM-------------DFCQGYFPCSVCLSGLDSLDSYPALETIQVTISSYK- 2286 N+ ++ T+ +C G C CL+G D LD+Y A++ +Q Sbjct 2241 IKNTFSLVTICDLYSIQDVGFKNQYCNGSIACQFCLAGFDMLDNYKAIDVVQYEADRRAF 2300 Query 2287 LDLT-FLGLAAEWLLAYMLFTKFFYLLGLSAIMQAFFGYFASHFISNS--WLMWFIISIV 2343 +D T L + E +++Y L+T +FY L +Q + F+ ++ W ++++ Sbjct 2301 VDYTGVLKIVIELIVSYALYTAWFYPLFALISIQILTTWLPELFMLSTLHWSFRLLVALA 2360 Query 2344 QMAPVSAMVRMYIFFASFYYVWKSYVHIMDGCTSSTCMMCYKRNRATRVECTTIVNGVKR 2403 M P +R YI ASF ++ + H+ GC+ S C+ CYKRNR+ RV+C+TIV G+ R Sbjct 2361 NMLPAHVFMRFYIIIASFIKLFSLFKHVAYGCSKSGCLFCYKRNRSLRVKCSTIVGGMIR 2420 Query 2404 SFYVYANGGRGFCKAHNWNCLNCDTFCAGSTFISDEVARDLSLQFKRPINPTDQSAYVVD 2463 + V ANGG GFC H WNC++CD++ G+TFI+ E A DLS + KRPI PTD + + V Sbjct 2421 YYDVMANGGTGFCSKHQWNCIDCDSYKPGNTFITVEAALDLSKELKRPIQPTDVAYHTVT 2480 Query 2464 SVTVKNGALHLYFDKAGQKTYERHPLSHFVNLDNLRANNTKGSLPINVIVFDGKSKCEES 2523 V ++ L++D+ GQ+ Y+ S FV+ NL + K ++V+V + + +++ Sbjct 2481 DVKQVGCSMRLFYDRDGQRIYDDVNASLFVDYSNLLHSKVKSVPNMHVVVVENDA--DKA 2538 Query 2524 AAKSASVYYSQLMCQPILLLDQALVSDVGDSTEVSVKMFDAYVDTFSATFSVPMEKLKAL 2583 +A+V+Y+Q + +PIL++D+ L++ T V+ MFD YVDTF + F V + L AL Sbjct 2539 NFLNAAVFYAQSLFRPILMVDKNLITTANTGTSVTETMFDVYVDTFLSMFDVDKKSLNAL 2598 Query 2584 VATAHSELAKGVALDGVLSTFVSAARQGV-VDTDVDTKDVIECLKLSHHSDIEVTGDSCN 2642 +ATAHS + +G + VL TF+S AR+ +D+DVDTK + + + + + +E+T +SCN Sbjct 2599 IATAHSSIKQGTQIYKVLDTFLSCARKSCSIDSDVDTKCLADSVMSAVSAGLELTDESCN 2658 Query 2643 NFMLTYNKVENMTPRDLGACIDCNARHINAQVAKSHNVSLVWNVKDYMSLSEQLRKQIRS 2702 N + TY K +N+ DLG I +A+H+ VAK VS +W+V + S + +++ Sbjct 2659 NLVPTYLKSDNIVAADLGVLIQNSAKHVQGNVAKIAGVSCIWSVDAFNQFSSDFQHKLKK 2718 Query 2703 AAKKNNIPFRLTCATTRQVVNVITTKISLKGGKVVSTWFKLLLKVTLLCVLAALFCYVIM 2762 A K + +LT V+V+TT SLKGG V S + + ++L+C + L+C +M Sbjct 2719 ACCKTGLKLKLTYNKQMANVSVLTTPFSLKGGAVFSYFVYVCFVLSLVCFIG-LWC--LM 2775 Query 2763 PVHSLSVHDGYTNEIIGYKAIQDGVTRDIVSTDDCFANKHAGFDSWFSQRGG--SYRNDK 2820 P +++ D YK + +GV RD+ D CFANK FD W+ G Y N Sbjct 2776 PTYTVHKSDFQLPVYASYKVLDNGVIRDVSVEDVCFANKFEQFDQWYESTFGLSYYSNSM 2835 Query 2821 NCPVVAAIITREIGFIVPGLPGTVLRALNGDFLHFLPRVFSAVGNICYTPSKLIEYSDFA 2880 CP+V A+I ++ G V +P VLR LHF+ SA G CYTP I YS+F Sbjct 2836 ACPIVVAVIDQDFGSTVFNVPTKVLR-YGYHVLHFITHALSADGVQCYTPHSQISYSNFY 2894 Query 2881 TSACVLAAECTIFKDAMGKPVPYCYDTNLLEGSISYSELRPDTRYVLMDG-SIIQFPNTY 2939 S CVL++ CT+F A G P PYCY L++ + YS L P RY L + I+FP Sbjct 2895 ASGCVLSSACTMFTMADGSPQPYCYTDGLMQNASLYSSLVPHVRYNLANAKGFIRFPEVL 2954 Query 2940 LEGSVRVVTTFDAEYCRHGTCERSEVGVCLSTSGRWVLNNEHYRALPGVFCGVDAMNLIA 2999 EG VRVV T YCR G CE ++ G+C + +G WVLNN++YR+LPG FCG D +LI Sbjct 2955 REGLVRVVRTRSMSYCRVGLCEEADEGICFNFNGSWVLNNDYYRSLPGTFCGRDVFDLIY 3014 Query 3000 NIFTPLVQPVGALDVSASVVAGGIIAILVTCAAYYFMKFRRAFGEYNHVVAANALLFLMS 3059 +F L QPV L ++AS +AG I+A++V YY +K +RAFG+Y VV N +++ ++ Sbjct 3015 QLFKGLAQPVDFLALTASSIAGAILAVIVVLVFYYLIKLKRAFGDYTSVVFVNVIVWCVN 3074 Query 3060 FTILCLAPAYSFLPGVYSIFYLYLTFYFTNDVSFLAHLQWFAMFSPIVPFWITAIYVFCI 3119 F +L + Y L VY+I Y Y T YF +++S + HLQW M+ I+P W +Y+ + Sbjct 3075 FMMLFVFQVYPTLSCVYAICYFYATLYFPSEISVIMHLQWLVMYGTIMPLWFCLLYIAVV 3134 Query 3120 SLKHFHWFFSNYLKK---RVMFNGVTFSTFEEAALCTFLLNKEMYLRLRSETLLPLTQYN 3176 H W FS Y +K V +G TFEE AL TF++ K+ Y +L++ L +N Sbjct 3135 VSNHAFWVFS-YCRKLGTSVRSDG----TFEEMALTTFMITKDSYCKLKNS--LSDVAFN 3187 Query 3177 RYLALYNKYKYFSGALDTTSYREAACCHLAKALNDFSNS-GADVLYQPPQTSITSAVLQS 3235 RYL+LYNKY+Y+SG +DT +YREAAC LAKA++ F+N+ G+DVLYQPP S++++ LQS Sbjct 3188 RYLSLYNKYRYYSGKMDTAAYREAACSQLAKAMDTFTNNNGSDVLYQPPTASVSTSFLQS 3247 Query 3236 GFRKMAFPSGKVEGCMVQVTCGTTTLNGLWLDDTVYCPRHVVCTAEDMLNPNYDDLLIRK 3295 G KM P+ KVE C+V VT G TLNGLWLDD VYCPRHV+C+A DM NP+Y +LL R Sbjct 3248 GIVKMVNPTSKVEPCVVSVTYGNMTLNGLWLDDKVYCPRHVICSASDMTNPDYTNLLCRV 3307 Query 3296 SNHSFLVQAGNVQLRVIGHSMQNCLLRLKVDTSNPKTPKYKFVRIQPGQTFSVLACYNGS 3355 ++ F V + L V+ + M+ C+L L V N +TPKY F ++PG+TF+VLA YNG Sbjct 3308 TSSDFTVLFDRLSLTVMSYQMRGCMLVLTVTLQNSRTPKYTFGVVKPGETFTVLAAYNGK 3367 Query 3356 PSGVYQCAMRPNHTIKGSFLNGSCGSVGFNIDYDCVSFCYMHHMELPTGVHAGTDLEGKF 3415 P G + MR ++TIKGSFL GSCGSVG+ I DCV F YMH +EL TG H GTD G F Sbjct 3368 PQGAFHVTMRSSYTIKGSFLCGSCGSVGYVIMGDCVKFVYMHQLELSTGCHTGTDFNGDF 3427 Query 3416 YGPFVDRQTAQAAGTDTTITLNVLAWLYAAVINGDRWFLNRFTTTLNDFNLVAMKYNYEP 3475 YGP+ D Q Q D ++N LAWLYAA++N WF+ ++ DFN+ A+ + Sbjct 3428 YGPYKDAQVVQLPIQDYIQSVNFLAWLYAAILNNCNWFIQSDKCSVEDFNVWALSNGFSQ 3487 Query 3476 LTQDHVDILGPLSAQTGIAVLDMCAALKELLQNGMNGRTILGSTILEDEFTPFDVVRQCS 3535 + D V + L++ TG+++ + AA+K L+NG GR I+GS EDE TP DV +Q + Sbjct 3488 VKSDLV--IDALASMTGVSLETLLAAIKR-LKNGFQGRQIMGSCSFEDELTPSDVYQQLA 3544 Query 3536 GVTFQGKFKKIVKGTHHWMLL-TFLTSLLILVQSTQWSLFFFVYENAFLPFALGIMAVAA 3594 G+ Q K ++ KGT W++ TFL S I+ +W++F +V N F + V + Sbjct 3545 GIKLQSKRTRLFKGTVCWIMASTFLFS-CIITAFVKWTMFMYVTTNMF-SITFCALCVIS 3602 Query 3595 CAMLLVKHKHAFLCLFLLPSLATVAYFN-MVYMPASWVMRIMTWLELADTSLSGYRLKDC 3653 AMLLVKHKH +L +++ P L T+ Y N +V ++ + WL S+ Y D Sbjct 3603 LAMLLVKHKHLYLTMYITPVLFTLLYNNYLVVYKHTFRGYVYAWLSYYVPSVE-YTYTDE 3661 Query 3654 VMYASALVL-LILMTARTVYDDAARRVWTLMNVITLVYKVYYGNSLDQAISMWALVISVT 3712 V+Y L++ ++ +T R++ D + + +I++ Y G++L++ I + ++ S+ Sbjct 3662 VIYGMLLLVGMVFVTLRSINHDLFSFIMFVGRLISVFSLWYKGSNLEEEILL--MLASLF 3719 Query 3713 SNYSGVVTTIMFLARAIV-FVCVEYYPLLFITGNTLQCIMLVYCFLGYCCCCYFGLFCLL 3771 Y+ M +A+ I +V V L F ++ ++L Y F+GY CY+GLF L+ Sbjct 3720 GTYTWTTVLSMAVAKVIAKWVAVNV--LYFTDIPQIKIVLLCYLFIGYIISCYWGLFSLM 3777 Query 3772 NRYFRLTLGVYDYLVSTQEFRYMNSQGLLPPKSSIDAFKLNIKLLGIGGKPCIKVATVQS 3831 N FR+ LGVY+Y +S QE RYMN+ GL PPK+S +A LN KLLGIGG P I+V+ QS Sbjct 3778 NSLFRMPLGVYNYKISVQELRYMNANGLRPPKNSFEALMLNFKLLGIGGVPIIEVSQFQS 3837 Query 3832 KMSDVKCTSVVLLSVLQQLRVESSSKLWAQCVQLHNDILLAKDTTEAFEKMVSLLSVLLS 3891 K++DVKC +VVLL+ LQ L V S+SKLW C LHN+IL D + AFEK+ LL VL + Sbjct 3838 KLTDVKCANVVLLNCLQHLHVASNSKLWHYCSTLHNEILATSDLSVAFEKLAQLLIVLFA 3897 Query 3892 MQGAVD------INKLCEEMLDNRATLQAIASEFSSLPSYAAYATAQEAYEQAVSNGDS- 3944 AVD I ++C++ + LQA+ SEF ++ S+ Y A++ ++A +G + Sbjct 3898 NPAAVDSKCLTSIEEVCDDYAKDNTVLQALQSEFVNMASFVEYEVAKKNLDEARFSGSAN 3957 Query 3945 EVVLKKLKKSLNVAKSEFDHDAAMQRKLEKMADQAMTQMYKQARSEDKRAKVTSAMQTML 4004 + LK+L+K+ N+AKS ++ D A+ +KLE+MAD A+T MYK+AR DK++KV SA+QTML Sbjct 3958 QQQLKQLEKACNIAKSAYERDRAVAKKLERMADLALTNMYKEARINDKKSKVVSALQTML 4017 Query 4005 FTMLRKLDNDALNNIINNARDGCVPLNIIPLTTAAKLMVVVPDYGTYKNTCDGNTFTYAS 4064 F+M+RKLDN ALN+I++NA GCVPLN IP A L ++VPD Y D TYA Sbjct 4018 FSMVRKLDNQALNSILDNAVKGCVPLNAIPSLAANTLNIIVPDKSVYDQIVDNIYVTYAG 4077 Query 4065 ALWEIQQVVDADSKIVQLSEINMDNSPNLAWPLIVTALRAN--SAVKLQNNELSPVALRQ 4122 +W+IQ + D+D QL+EI S + WPL++ A R N SA LQNNEL P L+ Sbjct 4078 NVWQIQTIQDSDGTNKQLNEI----SDDCNWPLVIIANRYNEVSATVLQNNELMPAKLKI 4133 Query 4123 MSCAAGTTQTACTDDNALAYYNNAKGGRFVLALLSDHQDLKWARFPKSDGTGTIYTELEP 4182 +G QT T YYNN+ G+ V A+LSD LK+ + K DG + EL+P Sbjct 4134 QVVNSGPDQTCNTPTQ--CYYNNSNNGKIVYAILSDVDGLKYTKILKDDGNFVV-LELDP 4190 Query 4183 PCRFVTDTPKGPKVKYLYFIKGLNNLNRGMVLGSLAATVRLQAGNATEVPANSTVLSFCA 4242 PC+F KG K+KYLYF+KG N L RG V+G++++TVRLQAG ATE +NS++LS CA Sbjct 4191 PCKFTVQDAKGLKIKYLYFVKGCNTLARGWVVGTISSTVRLQAGTATEYASNSSILSLCA 4250 Query 4243 FAVDPAKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPEANMDQESFGGASCCLYCR 4302 F+VDP K Y D++ GG PI NCVKMLC H GTG AITV P+A Q+S+GGAS C+YCR Sbjct 4251 FSVDPKKTYLDFIQQGGTPIANCVKMLCDHAGTGMAITVKPDATTSQDSYGGASVCIYCR 4310 Query 4303 CHIDHPNPKGFCDLKGKYVQIPTTCANDPVGFTLRNTVCTVCGMWKGYGCSCDQLREPMM 4362 ++HP+ G C L+GK+VQ+P DPV + L + VC VCG W+ CSC + + Sbjct 4311 ARVEHPDVDGLCKLRGKFVQVPVG-IKDPVSYVLTHDVCRVCGFWRDGSCSCVS-TDTTV 4368 Query 4363 QSADASTFLNGFAV 4376 QS D + FLNGF V Sbjct 4369 QSKD-TNFLNGFGV 4381 Range 2: 1273 to 1427 Score:87.0 bits(214), Expect:4e-15, Method:Compositional matrix adjust., Identities:52/155(34%), Positives:80/155(51%), Gaps:2/155(1%) Query 1007 LTDNVAIKCIDIVKEAQSAKPTVIVNAANTHLKHGGGVAGALNKATNGAMQNESDEYIRQ 1066 +T NV DI+K ++ K V+VN AN H+ HGGGVA A+ A E+ ++ Sbjct 1273 ITPNVCFVKGDIIKVSKLVKAEVVVNPANGHMVHGGGVAKAIAVAAGQQFVKETTNMVKS 1332 Query 1067 NGPLTVGGSCLLSGHNLAEKCLHVVGPN--LNAGEDVQLLKRAYENFNSQDVLLAPLLSA 1124 G G + +G L + L+VVGP+ + LL+R Y++FN+ D ++ L+SA Sbjct 1333 KGVCATGDCYVSTGGKLCKTVLNVVGPDARTQGKQSYVLLERVYKHFNNYDCVVTTLISA 1392 Query 1125 GIFGAKPLQSLKMCVEIVRTQVYLAVNDKSLYDQI 1159 GIF SL + + QV L N++ +D I Sbjct 1393 GIFSVPSDVSLTYLLGTAKKQVVLVSNNQEDFDLI 1427 Range 3: 748 to 1036 Score:68.9 bits(167), Expect:1e-09, Method:Compositional matrix adjust., Identities:76/304(25%), Positives:129/304(42%), Gaps:51/304(16%) Query 714 RGLYRQCIRGKEQLQLLMP---LKAPKEVTFLEGDAHDTVLTSEEVVLKSGELEALETPI 770 RGL + L MP KA ++ +L+G D L V + + L TP Sbjct 748 RGLLHSSQLPLDVYDLTMPSQVQKAKQKPIYLKGSGSDFSLADSVVEVVTTSL----TPC 803 Query 771 DSFTSGAVVGTPVCI-NGLMLLELENKEQYCALSPGLLATNNVFRLKGGAPVKGVTFGED 829 ++ V +CI + + + + +K + + + +R+ + VTF E Sbjct 804 -GYSEPPKVADKICIVDNVYMAKAGDKYYPVVVDDHVGLLDQAWRVPCAG--RRVTFKEQ 860 Query 830 -TVLEVQGY-KNVKITFELDVRVDKVLNEKCSVYTVESGTEVTEFACVVAEAVVKTLQPV 887 TV E+ K +K+ +ELD + +LN C V+ V+ ++ EF VV +A+ + L P Sbjct 861 PTVKEIISMPKIIKVFYELDNDFNTILNTACGVFEVDDTVDMEEFYAVVIDAIEEKLSPC 920 Query 888 SDLL---TPMGIDLDEWSVATFYLFDDAGEEKLSSRMYCSFYPPDEEEDCEE-------- 936 +L + L + +LFD+AGEE + ++YC+F P++++ EE Sbjct 921 KELEGVGAKVSAFLQKLEDNPLFLFDEAGEEVFAPKLYCAFTAPEDDDFLEESDVEEDDV 980 Query 937 -----------------CEDEEETCEHEYGTEDDYKGLPLEFGASTET--PHVEEEEEEE 977 ++EE+ E T DD G S ET VEE+ E Sbjct 981 EGEETDLTITSAGQPCVASEQEESSEVLEDTLDD--------GPSVETSDSQVEEDVEMS 1032 Query 978 DWLD 981 D++D Sbjct 1033 DFVD 1036 >RecName: Full=Replicase polyprotein 1a; Short=pp1a; AltName: Full=ORF1a polyprotein; Contains: RecName: Full=Non-structural protein 1; Short=nsp1; AltName: Full=p28; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p65; Contains: RecName: Full=Papain-like protease nsp3; Short=PL-PRO; AltName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=PL1-PRO/PL2-PRO; AltName: Full=PL1/PL2; AltName: Full=PL2-PRO; AltName: Full=Papain-like proteinases 1/2; AltName: Full=p210; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; AltName: Full=Peptide HD2; AltName: Full=p44; Contains: RecName: Full=3C-like proteinase nsp5; Short=3CL-PRO; Short=3CLp; AltName: Full=M-PRO; AltName: Full=nsp5; AltName: Full=p27; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; AltName: Full=p10; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; AltName: Full=p22; Contains: RecName: Full=RNA-capping enzyme subunit nsp9; AltName: Full=Non-structural protein 9; Short=nsp9; AltName: Full=p12; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; AltName: Full=p15; Contains: RecName: Full=Non-structural protein 11; Short=nsp11 [Bovine coronavirus strain Quebec] Sequence ID: P0C6U1.1 Length: 4383 Range 1: 1565 to 4381 Score:1875 bits(4857), Expect:0.0, Method:Compositional matrix adjust., Identities:1095/2890(38%), Positives:1620/2890(56%), Gaps:125/2890(4%) Query 1539 IKVFTTVDNTNLHTHIVDMSMTYGQQFGPTYLDGADVTKIKPHVNHEGKTFFVLPSDDTL 1598 + + TVD N V + ++G+ G + DG +VTK K +N++GK FF D L Sbjct 1565 VDILLTVDGVNFTNRFVPVGESFGKSLGNVFCDGVNVTKHKCDINYKGKVFFQF---DNL 1621 Query 1599 RSE---AFEYYHTIDESFLGRYMSALNHTKKWKFPQVGGLTSIKWADNNCYLSSVLLALQ 1655 SE A D+ L Y + L + KW+ G + K A+NNC+++ L LQ Sbjct 1622 SSEDLKAVRSSFNFDQKELLAYYNMLVNCSKWQVVFNGKYFTFKQANNNCFVNVSCLMLQ 1681 Query 1656 QVEVKFNAPALQEAYYRARAGDAANFCALILAYSNKTVGELGDVRETMTHLLQHANLESA 1715 + +KF QEA+ R+G A F +L+LA G+ D R+ + + +L A Sbjct 1682 SLNLKFKIVQWQEAWLEFRSGRPARFVSLVLAKGGFKFGDPADSRDFLRVVFSQVDLTGA 1741 Query 1716 KRVLNVVCKHCGQKTTTLKGVEAVMYMGTLSYDELKTGVSIPCVCGRNATQYLVQQESSF 1775 + CK CG K GV+AVM+ GTLS ++L+ G ++ C CG+ + V+ + F Sbjct 1742 ICDFEIACK-CGVKQEQRTGVDAVMHFGTLSREDLEIGYTVDCSCGKKLI-HCVRFDVPF 1799 Query 1776 VMMSAPPAEYKLQQGAFLCANEYTGNYQCGHYTHITAKETLYRVDGAHLTKMSEYKGPVT 1835 ++ S PA KL +G AN + G+ + GHY H+ +++ D +++ K+++ G ++ Sbjct 1800 LICSNTPASVKLPKGVG-SANIFKGD-KVGHYVHVKCEQSYQLYDASNVKKVTDVTGNLS 1857 Query 1836 DVFY-KETSYTTAIKPVSYKLDGVTYTEIEPKLDGYYKKGNAYYTEQPIDL-VPTQPMPN 1893 D Y K T +Y LD V E +P L YY G YYT++ I T + Sbjct 1858 DCLYLKNLKQTFKSVLTTYYLDDVKKIEYKPDLSQYYCDGGKYYTQRIIKAQFKTFEKVD 1917 Query 1894 ASFDNFKLTCSNTKFADDLNQMTGFKKPAS-RELTVTFFPDLNGDVVAIDYRHYSTSFKK 1952 + NFKL D LN GF E VT +P GDVV Y +++ Sbjct 1918 GVYTNFKLI--GHTVCDILNAKLGFDSSKEFVEYKVTEWPTATGDVVLATDDLYVKRYER 1975 Query 1953 GAKLVHKPILW--HINQTTNKTTYKPNIWCLRCLWSTKPVDTSNSFEVLVVEDTQGMDNL 2010 G KP++W H + N TY ++ + N F+VL V+D ++ Sbjct 1976 GCITFGKPVIWLSHEQASLNSLTY----------FNRPLLVDENKFDVLKVDDVDDGGDI 2025 Query 2011 ACESQTTTSEEV--VENPTVQKEIIECDVKTTEVVGNVILKPSEEGVKVTQELGHEDLMA 2068 + ES +E+ ++ V+K +V +VI+ +K + L D+ Sbjct 2026 S-ESDAKEPKEINIIKLSGVKKPF--------KVEDSVIVNDDTSEIKYVKSLSIVDVYD 2076 Query 2069 AYVEETSITIKKPNELSLALGLKTLA--THGAAAINSVPWSKI-LAYVKPFLGQTAVITS 2125 ++ ++ N LS A+ + T+ + S+P + L +KP + Sbjct 2077 MWLTGCRCVVRTANALSRAVNVPTIRKFIKFGMTLVSIPIDLLNLREIKPVFNVVKAV-R 2135 Query 2126 NCIKKCVQRVFSNYMPYVITLLF--------QLCTFTKSTNSRIKASLPTTIAKNSVKS- 2176 N I C N++ ++ LLF +T S++ L KN+ + Sbjct 2136 NKISACF-----NFIKWLFVLLFGWIKISADNKVIYTTEVASKLTCKLVALAFKNAFLTF 2190 Query 2177 ----VAK-LCLDVCINYVKSPKFSKLFTIVMWLLLLSICLGSL-TYVTAVLGVCLSSLGV 2230 VA+ C+ I + F+ ++ V++ +G L T+V ++ ++ + Sbjct 2191 KWSVVARGACIIATIFLLW---FNFIYANVIFSDFYLPKIGFLPTFVGKIVQWIKNTFSL 2247 Query 2231 PSYCDGVRELYINSSNVTTMDFCQGYFPCSVCLSGLDSLDSYPALETIQVTISSYK-LDL 2289 + CD LY +C G C CL+G D LD+Y A++ +Q +D Sbjct 2248 VTICD----LYSIQDVGFKNQYCNGSIACQFCLAGFDMLDNYKAIDVVQYEADRRAFVDY 2303 Query 2290 T-FLGLAAEWLLAYMLFTKFFYLLGLSAIMQAFFGYFASHFISNS--WLMWFIISIVQMA 2346 T L + E +++Y L+T +FY L +Q + + ++ W + ++S+ M Sbjct 2304 TGVLKIVIELIVSYALYTAWFYPLFALISIQILTTWLPELLMLSTLHWSVRLLVSLANML 2363 Query 2347 PVSAMVRMYIFFASFYYVWKSYVHIMDGCTSSTCMMCYKRNRATRVECTTIVNGVKRSFY 2406 P +R YI ASF ++ + H+ GC+ S C+ CYKRNR+ RV+C+TIV G+ R + Sbjct 2364 PAHVFMRFYIIIASFIKLFSLFRHVAYGCSKSGCLFCYKRNRSLRVKCSTIVGGMIRYYD 2423 Query 2407 VYANGGRGFCKAHNWNCLNCDTFCAGSTFISDEVARDLSLQFKRPINPTDQSAYVVDSVT 2466 V ANGG GFC H WNC++CD++ G+TFI+ E A DLS + KRPI PTD + + V V Sbjct 2424 VMANGGTGFCSKHQWNCIDCDSYKPGNTFITVEAALDLSKELKRPIQPTDVAYHTVTDVK 2483 Query 2467 VKNGALHLYFDKAGQKTYERHPLSHFVNLDNLRANNTKGSLPINVIVFDGKSKCEESAAK 2526 + L++D+ GQ+TY+ S FV+ NL + K ++V+V + + +++ Sbjct 2484 QVGCYMRLFYDRDGQRTYDDVNASLFVDYSNLLHSKVKSVPNMHVVVVENDA--DKANFL 2541 Query 2527 SASVYYSQLMCQPILLLDQALVSDVGDSTEVSVKMFDAYVDTFSATFSVPMEKLKALVAT 2586 +A+V+Y+Q + +PIL++D+ L++ T V+ MFD YVDTF + F V + L AL+AT Sbjct 2542 NAAVFYAQSLFRPILMVDKILITTANTGTSVTETMFDVYVDTFLSMFDVDKKSLNALIAT 2601 Query 2587 AHSELAKGVALDGVLSTFVSAARQGV-VDTDVDTKDVIECLKLSHHSDIEVTGDSCNNFM 2645 AHS + +G + VL TF+S AR+ +D+DVDTK + + + + + +E+T +SCNN + Sbjct 2602 AHSSIKQGTQICKVLDTFLSCARKSCSIDSDVDTKCLADSVMSAVSAGLELTDESCNNLV 2661 Query 2646 LTYNKVENMTPRDLGACIDCNARHINAQVAKSHNVSLVWNVKDYMSLSEQLRKQIRSAAK 2705 TY K +N+ DLG I +A+H+ VAK VS +W+V + LS + +++ A Sbjct 2662 PTYLKGDNIVAADLGVLIQNSAKHVQGNVAKIAGVSCIWSVDAFNQLSSDFQHKLKKACC 2721 Query 2706 KNNIPFRLTCATTRQVVNVITTKISLKGGKVVSTWFKLLLKVTLLCVLAALFCYVIMPVH 2765 K + LT V+V+TT SLKGG V S + + ++L+C + L+C +MP + Sbjct 2722 KTGLKLELTYNKQMANVSVLTTPFSLKGGAVFSYFVYVCFVLSLVCFIG-LWC--LMPTY 2778 Query 2766 SLSVHDGYTNEIIGYKAIQDGVTRDIVSTDDCFANKHAGFDSWFSQRGG--SYRNDKNCP 2823 ++ D YK + +GV RD+ D CFANK FD W+ G Y N CP Sbjct 2779 TVHKSDFQLPVYASYKVLDNGVIRDVSVEDVCFANKFEQFDQWYESTFGLSYYSNSMACP 2838 Query 2824 VVAAIITREIGFIVPGLPGTVLRALNGDFLHFLPRVFSAVGNICYTPSKLIEYSDFATSA 2883 +V A++ ++ G V +P VLR LHF+ SA G CYTP I YS+F S Sbjct 2839 IVVAVVDQDFGSTVFNVPTKVLR-YGYHVLHFITHALSADGVQCYTPHSQISYSNFYASG 2897 Query 2884 CVLAAECTIFKDAMGKPVPYCYDTNLLEGSISYSELRPDTRYVLMDG-SIIQFPNTYLEG 2942 CVL++ CT+F A G P PYCY L++ + YS L P RY L + I+ P EG Sbjct 2898 CVLSSACTMFAMADGSPQPYCYTDGLMQNASLYSSLVPHVRYNLANAKGFIRLPEVLREG 2957 Query 2943 SVRVVTTFDAEYCRHGTCERSEVGVCLSTSGRWVLNNEHYRALPGVFCGVDAMNLIANIF 3002 VR+V T YCR G CE ++ G+C + +G WVLNN++YR+LPG FCG D +LI +F Sbjct 2958 LVRIVRTRSMSYCRVGLCEEADEGICFNFNGSWVLNNDYYRSLPGTFCGRDVFDLIYQLF 3017 Query 3003 TPLVQPVGALDVSASVVAGGIIAILVTCAAYYFMKFRRAFGEYNHVVAANALLFLMSFTI 3062 L QPV L ++AS +AG I+A++V YY +K +RAFG+Y +V N +++ ++F + Sbjct 3018 KGLAQPVDFLALTASSIAGAILAVIVVLGFYYLIKLKRAFGDYTSIVFVNVIVWCVNFMM 3077 Query 3063 LCLAPAYSFLPGVYSIFYLYLTFYFTNDVSFLAHLQWFAMFSPIVPFWITAIYVFCISLK 3122 L + Y L VY+I Y Y T YF +++S + HLQW M+ I+P W +Y+ + Sbjct 3078 LFVFQVYPTLSCVYAICYFYATLYFPSEISVIMHLQWLVMYGTIMPLWFCLLYISVVVSN 3137 Query 3123 HFHWFFS--NYLKKRVMFNGVTFSTFEEAALCTFLLNKEMYLRLRSETLLPLTQYNRYLA 3180 H W FS L V +G TFEE AL TF++ K+ Y +L++ L +NRYL+ Sbjct 3138 HAFWVFSYCRQLGTSVRSDG----TFEEMALTTFMITKDSYCKLKNS--LSDVAFNRYLS 3191 Query 3181 LYNKYKYFSGALDTTSYREAACCHLAKALNDFSNS-GADVLYQPPQTSITSAVLQSGFRK 3239 LYNKY+Y+SG +DT +YREAAC LAKA++ F+N+ G+DVLYQPP S++++ LQSG K Sbjct 3192 LYNKYRYYSGKMDTAAYREAACSQLAKAMDTFTNNNGSDVLYQPPTASVSTSFLQSGIVK 3251 Query 3240 MAFPSGKVEGCMVQVTCGTTTLNGLWLDDTVYCPRHVVCTAEDMLNPNYDDLLIRKSNHS 3299 M P+ KVE C+V VT G TLNGLWLDD VYCPRHV+C+A DM NP+Y +LL R ++ Sbjct 3252 MVNPTSKVEPCIVSVTYGNMTLNGLWLDDKVYCPRHVICSASDMTNPDYTNLLCRVTSSD 3311 Query 3300 FLVQAGNVQLRVIGHSMQNCLLRLKVDTSNPKTPKYKFVRIQPGQTFSVLACYNGSPSGV 3359 F V + L V+ + MQ C+L L V N +TPKY F ++PG+TF+VLA YNG P G Sbjct 3312 FTVLFDRLSLTVMSYQMQGCMLVLTVTLQNSRTPKYTFGVVKPGETFTVLAAYNGKPQGA 3371 Query 3360 YQCAMRPNHTIKGSFLNGSCGSVGFNIDYDCVSFCYMHHMELPTGVHAGTDLEGKFYGPF 3419 + MR ++TIKGSFL GSCGSVG+ I DCV F YMH +EL TG H GTD G FYGP+ Sbjct 3372 FHVTMRSSYTIKGSFLCGSCGSVGYVIMGDCVKFVYMHQLELSTGCHTGTDFNGDFYGPY 3431 Query 3420 VDRQTAQAAGTDTTITLNVLAWLYAAVINGDRWFLNRFTTTLNDFNLVAMKYNYEPLTQD 3479 D Q Q D ++N +AWLYAA++N WF+ ++ DFN+ A+ + + D Sbjct 3432 KDAQVVQLPVQDYIQSVNFVAWLYAAILNNCNWFVQSDKCSVEDFNVWALSNGFSQVKSD 3491 Query 3480 HVDILGPLSAQTGIAVLDMCAALKELLQNGMNGRTILGSTILEDEFTPFDVVRQCSGVTF 3539 V + L++ TG+++ + AA+K L+NG GR I+GS EDE TP DV +Q +G+ Sbjct 3492 LV--IDALASMTGVSLETLLAAIKR-LKNGFQGRQIMGSCSFEDELTPSDVYQQLAGIKL 3548 Query 3540 QGKFKKIVKGTHHWMLL-TFLTSLLILVQSTQWSLFFFVYENAFLPFALGIMAVAACAML 3598 Q K ++VKG W++ TFL S I+ +W++F +V N L + V + AML Sbjct 3549 QSKRTRLVKGIVCWIMASTFLFS-CIITAFVKWTMFMYVTTN-MLSITFCALCVISLAML 3606 Query 3599 LVKHKHAFLCLFLLPSLATVAYFN-MVYMPASWVMRIMTWLELADTSLSGYRLKDCVMYA 3657 LVKHKH +L ++++P L T+ Y N +V ++ + WL S+ Y D V+Y Sbjct 3607 LVKHKHLYLTMYIIPVLFTLLYNNYLVVYKQTFRGYVYAWLSYYVPSVE-YTYTDEVIYG 3665 Query 3658 SALVL-LILMTARTVYDDAARRVWTLMNVITLVYKVYYGNSLDQAISMWALVISVTSNYS 3716 L++ ++ +T R++ D + + VI++V Y G++L++ I + ++ S+ Y+ Sbjct 3666 MLLLIGMVFVTLRSINHDLFSFIMFVGRVISVVSLWYMGSNLEEEILL--MLASLFGTYT 3723 Query 3717 GVVTTIMFLARAIV-FVCVEYYPLLFITGNTLQCIMLVYCFLGYCCCCYFGLFCLLNRYF 3775 M A+ I +V V L F ++ +++ Y F+GY CY+GLF L+N F Sbjct 3724 WTTALSMAAAKVIAKWVAVNV--LYFTDIPQIKIVLVCYLFIGYIISCYWGLFSLMNSLF 3781 Query 3776 RLTLGVYDYLVSTQEFRYMNSQGLLPPKSSIDAFKLNIKLLGIGGKPCIKVATVQSKMSD 3835 R+ LGVY+Y +S QE RYMN+ GL PPK+S +A LN KLLGIGG P I+V+ QSK++D Sbjct 3782 RMPLGVYNYKISVQELRYMNANGLRPPKNSFEALMLNFKLLGIGGVPIIEVSQFQSKLTD 3841 Query 3836 VKCTSVVLLSVLQQLRVESSSKLWAQCVQLHNDILLAKDTTEAFEKMVSLLSVLLSMQGA 3895 VKC + LL+ LQ L V S+SKLW C LHN+IL D AFEK+ LL VL + A Sbjct 3842 VKCANGGLLNCLQHLHVASNSKLWQYCSTLHNEILATSDLGVAFEKLAQLLIVLFANPAA 3901 Query 3896 VD------INKLCEEMLDNRATLQAIASEFSSLPSYAAYATAQEAYEQAVSNGDS-EVVL 3948 VD I ++C++ + LQA+ SEF ++ S+ Y A++ ++A S+G + + L Sbjct 3902 VDSKCLTSIEEVCDDYAKDNTVLQALQSEFVNMASFVEYEVAKKNLDEACSSGSANQQQL 3961 Query 3949 KKLKKSLNVAKSEFDHDAAMQRKLEKMADQAMTQMYKQARSEDKRAKVTSAMQTMLFTML 4008 K+L+K+ N+AKS ++ D A+ RKLE+MAD A+T MYK+AR DK++KV SA+QTMLF+M+ Sbjct 3962 KQLEKACNIAKSAYERDRAVARKLERMADLALTNMYKEARINDKKSKVVSALQTMLFSMV 4021 Query 4009 RKLDNDALNNIINNARDGCVPLNIIPLTTAAKLMVVVPDYGTYKNTCDGNTFTYASALWE 4068 RKLDN ALN+I++NA GCVPLN IP A L ++VPD Y D TYA +W+ Sbjct 4022 RKLDNQALNSILDNAVKGCVPLNAIPSLAANTLTIIVPDKSVYDQVVDNVYVTYAGNVWQ 4081 Query 4069 IQQVVDADSKIVQLSEINMDNSPNLAWPLIVTALRAN--SAVKLQNNELSPVALRQMSCA 4126 IQ + D+D QL EI S + WPL++ A R N SA LQNNEL P L+ Sbjct 4082 IQTIQDSDGTNKQLHEI----SDDCNWPLVIIANRHNEVSATVLQNNELMPAKLKTQVVN 4137 Query 4127 AGTTQTACTDDNALAYYNNAKGGRFVLALLSDHQDLKWARFPKSDGTGTIYTELEPPCRF 4186 +G QT T YYNN+ G+ V A+LSD LK+ + K DG + EL+PPC+F Sbjct 4138 SGPDQTCNTPTQ--CYYNNSYNGKIVYAILSDVDGLKYTKILKDDGNFVV-LELDPPCKF 4194 Query 4187 VTDTPKGPKVKYLYFIKGLNNLNRGMVLGSLAATVRLQAGNATEVPANSTVLSFCAFAVD 4246 KG K+KYLYF+KG N L RG V+G++++TVRLQAG ATE +NS++LS CAF+VD Sbjct 4195 TVQDVKGLKIKYLYFVKGCNTLARGWVVGTISSTVRLQAGTATEYASNSSILSLCAFSVD 4254 Query 4247 PAKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPEANMDQESFGGASCCLYCRCHID 4306 P K Y D++ GG PI NCVKMLC H GTG AITV P+A Q+S+GGAS C+YCR ++ Sbjct 4255 PKKTYLDFIQQGGTPIANCVKMLCDHAGTGMAITVKPDATTSQDSYGGASVCIYCRARVE 4314 Query 4307 HPNPKGFCDLKGKYVQIPTTCANDPVGFTLRNTVCTVCGMWKGYGCSCDQLREPMMQSAD 4366 HP+ G C L+GK+VQ+P DPV + L + VC VCG W+ CSC + +QS D Sbjct 4315 HPDVDGLCKLRGKFVQVPVG-IKDPVSYVLTHDVCQVCGFWRDGSCSCVS-TDTTVQSKD 4372 Query 4367 ASTFLNGFAV 4376 + FLNGF V Sbjct 4373 -TNFLNGFGV 4381 Range 2: 1273 to 1427 Score:87.0 bits(214), Expect:4e-15, Method:Compositional matrix adjust., Identities:51/155(33%), Positives:79/155(50%), Gaps:2/155(1%) Query 1007 LTDNVAIKCIDIVKEAQSAKPTVIVNAANTHLKHGGGVAGALNKATNGAMQNESDEYIRQ 1066 +T NV DI+K ++ K V+VN AN H+ HGGGVA A+ A E+ + ++ Sbjct 1273 ITPNVCFVKGDIIKVSKRVKAEVVVNPANGHMAHGGGVAKAIAVAAGQQFVKETTDMVKS 1332 Query 1067 NGPLTVGGSCLLSGHNLAEKCLHVVGPN--LNAGEDVQLLKRAYENFNSQDVLLAPLLSA 1124 G G + +G L + L+VVGP+ + LL+R Y++ N D ++ L+SA Sbjct 1333 KGVCATGDCYVSTGGKLCKTVLNVVGPDARTQGKQSYALLERVYKHLNKYDCVVTTLISA 1392 Query 1125 GIFGAKPLQSLKMCVEIVRTQVYLAVNDKSLYDQI 1159 GIF SL + + QV L N++ +D I Sbjct 1393 GIFSVPSDVSLTYLLGTAKKQVVLVSNNQEDFDLI 1427 Range 3: 748 to 1016 Score:66.6 bits(161), Expect:6e-09, Method:Compositional matrix adjust., Identities:70/286(24%), Positives:125/286(43%), Gaps:28/286(9%) Query 714 RGLYRQCIRGKEQLQLLMP---LKAPKEVTFLEGDAHDTVLTSEEVVLKSGELEALETPI 770 RGL + L MP K ++ +L+G D L V + + L TP Sbjct 748 RGLLHSSQLPLDVYDLTMPSQVQKTKQKGIYLKGSGSDFSLADSVVEVVTTSL----TPC 803 Query 771 DSFTSGAVVGTPVCINGLMLLELENKEQYCALSPGLLAT-NNVFRLKGGAPVKG--VTFG 827 ++ V +CI + + + Y + G + + +R+ P G VTF Sbjct 804 -GYSEPPKVADKICIVDNVYMAKAGDKYYPVVVDGHVGLLDQAWRV----PCAGRCVTFK 858 Query 828 ED-TVLEVQGY-KNVKITFELDVRVDKVLNEKCSVYTVESGTEVTEFACVVAEAVVKTLQ 885 E TV E+ K +K+ +ELD + +LN C + V+ ++ EF VV +A+ + L Sbjct 859 EQPTVNEIASTPKTIKVFYELDKDFNTILNTACGEFEVDDTVDMEEFYAVVIDAIEEKLS 918 Query 886 PVSDLL---TPMGIDLDEWSVATFYLFDDAGEEKLSSRMYCSFYPPDEEEDCEECEDEEE 942 P +L + L + + +LFD+AGEE L+ ++YC+F P++++ EE Sbjct 919 PCKELEGVGAKVSAFLQKLEDNSLFLFDEAGEEVLAPKLYCAFTAPEDDDFLEE------ 972 Query 943 TCEHEYGTEDDYKGLPLEFGASTETPHVEEEEEEEDWLDDAIEAEP 988 + + + L ++ E E+EE + L+D ++ P Sbjct 973 --SGVEEDDVEGEETDLTVTSAGEPCVASEQEESSEILEDTLDDGP 1016 >RecName: Full=Replicase polyprotein 1a; Short=pp1a; AltName: Full=ORF1a polyprotein; Contains: RecName: Full=Non-structural protein 1; Short=nsp1; AltName: Full=p28; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p65; Contains: RecName: Full=Papain-like protease nsp3; Short=PL-PRO; AltName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=PL1-PRO/PL2-PRO; AltName: Full=PL1/PL2; AltName: Full=PL2-PRO; AltName: Full=Papain-like proteinases 1/2; AltName: Full=p210; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; AltName: Full=Peptide HD2; AltName: Full=p44; Contains: RecName: Full=3C-like proteinase nsp5; Short=3CL-PRO; Short=3CLp; AltName: Full=M-PRO; AltName: Full=nsp5; AltName: Full=p27; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; AltName: Full=p10; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; AltName: Full=p22; Contains: RecName: Full=RNA-capping enzyme subunit nsp9; AltName: Full=Non-structural protein 9; Short=nsp9; AltName: Full=p12; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; AltName: Full=p15; Contains: RecName: Full=Non-structural protein 11; Short=nsp11 [Bovine coronavirus Mebus] Sequence ID: P0C6U0.1 Length: 4383 Range 1: 1565 to 4381 Score:1871 bits(4847), Expect:0.0, Method:Compositional matrix adjust., Identities:1089/2890(38%), Positives:1613/2890(55%), Gaps:125/2890(4%) Query 1539 IKVFTTVDNTNLHTHIVDMSMTYGQQFGPTYLDGADVTKIKPHVNHEGKTFFVLPSDDTL 1598 + + TVD N V + ++G+ G + DG +VTK K +N++GK FF D L Sbjct 1565 VDILLTVDGVNFTNRFVPVGESFGKSLGNVFCDGVNVTKHKCDINYKGKVFFQF---DNL 1621 Query 1599 RSE---AFEYYHTIDESFLGRYMSALNHTKKWKFPQVGGLTSIKWADNNCYLSSVLLALQ 1655 SE A D+ L Y + L + KW+ G + K A+NNC+++ L LQ Sbjct 1622 SSEDLKAVRSSFNFDQKELLAYYNMLVNCSKWQVVFNGKYFTFKQANNNCFVNVSCLMLQ 1681 Query 1656 QVEVKFNAPALQEAYYRARAGDAANFCALILAYSNKTVGELGDVRETMTHLLQHANLESA 1715 + +KF QEA+ R+G A F +L+LA G+ D R+ + + +L A Sbjct 1682 SLNLKFKIVQWQEAWLEFRSGRPARFVSLVLAKGGFKFGDPADSRDFLRVVFSQVDLTGA 1741 Query 1716 KRVLNVVCKHCGQKTTTLKGVEAVMYMGTLSYDELKTGVSIPCVCGRNATQYLVQQESSF 1775 + CK CG K GV+AVM+ GTLS ++L+ G ++ C CG+ + V+ + F Sbjct 1742 ICDFEIACK-CGVKQEQRTGVDAVMHFGTLSREDLEIGYTVDCSCGKKLI-HCVRFDVPF 1799 Query 1776 VMMSAPPAEYKLQQGAFLCANEYTGNYQCGHYTHITAKETLYRVDGAHLTKMSEYKGPVT 1835 ++ S PA KL +G AN + G+ + GHY H+ +++ D +++ K+++ G ++ Sbjct 1800 LICSNTPASVKLPKGVG-SANIFKGD-KVGHYVHVKCEQSYQLYDASNVKKVTDVTGNLS 1857 Query 1836 DVFY-KETSYTTAIKPVSYKLDGVTYTEIEPKLDGYYKKGNAYYTEQPIDL-VPTQPMPN 1893 D Y K T +Y LD V E +P L YY G YYT++ I T + Sbjct 1858 DCLYLKNLKQTFKSVLTTYYLDDVKKIEYKPDLSQYYCDGGKYYTQRIIKAQFKTFEKVD 1917 Query 1894 ASFDNFKLTCSNTKFADDLNQMTGFKKPAS-RELTVTFFPDLNGDVVAIDYRHYSTSFKK 1952 + NFKL D LN GF E VT +P GDVV Y +++ Sbjct 1918 GVYTNFKLI--GHTVCDILNAKLGFDSSKEFVEYKVTEWPTATGDVVLATDDLYVKRYER 1975 Query 1953 GAKLVHKPILW--HINQTTNKTTYKPNIWCLRCLWSTKPVDTSNSFEVLVVEDTQGMDNL 2010 G KP++W H + N TY ++ + N F+VL V+D ++ Sbjct 1976 GCITFGKPVIWLSHEQASLNSLTY----------FNRPLLVDENKFDVLKVDDVDDGGDI 2025 Query 2011 ACESQTTTSEEV--VENPTVQKEIIECDVKTTEVVGNVILKPSEEGVKVTQELGHEDLMA 2068 + ES +E+ ++ V+K +V +VI+ +K + L D+ Sbjct 2026 S-ESDAKEPKEINIIKLSGVKKPF--------KVEDSVIVNDDTSEIKYVKSLSIVDVYD 2076 Query 2069 AYVEETSITIKKPNELSLALGLKTLA--THGAAAINSVPWSKI-LAYVKPFLGQTAVITS 2125 ++ ++ N LS A+ + T+ + S+P + L +KP + Sbjct 2077 MWLTGCRCVVRTANALSRAVNVPTIRKFIKFGMTLVSIPIDLLNLREIKPVFNVVKAV-R 2135 Query 2126 NCIKKCVQRVFSNYMPYVITLLFQLCTFTKSTNSRIKASLPTTIAKNSVKSVAKLCLDVC 2185 N I C N++ ++ LLF + K T +A + L Sbjct 2136 NKISACF-----NFIKWLFVLLFGWIKISADN----KVIYTTEVASKLTCKLVALAFKNA 2186 Query 2186 INYVKSPKFSKLFTIVMWLLLLSICLGSLTYVTAVLG-VCLSSLG-VPSYCDGVRELYIN 2243 K ++ I+ + LL + Y + L +G +P++ + + N Sbjct 2187 FLTFKWSVVARGACIIATIFLLWF---NFIYANVIFSDFYLPKIGFLPTFVGKIAQWIKN 2243 Query 2244 SSNVTTM-------------DFCQGYFPCSVCLSGLDSLDSYPALETIQVTISSYK-LDL 2289 + ++ T+ +C G C CL+G D LD+Y A++ +Q +D Sbjct 2244 TFSLVTICDLYSIQDVGFKNQYCNGSIACQFCLAGFDMLDNYKAIDVVQYEADRRAFVDY 2303 Query 2290 T-FLGLAAEWLLAYMLFTKFFYLLGLSAIMQAFFGYFASHFISNS--WLMWFIISIVQMA 2346 T L + E +++Y L+T +FY L +Q + F+ ++ W + ++S+ M Sbjct 2304 TGVLKIVIELIVSYALYTAWFYPLFALISIQILTTWLPELFMLSTLHWSVRLLVSLANML 2363 Query 2347 PVSAMVRMYIFFASFYYVWKSYVHIMDGCTSSTCMMCYKRNRATRVECTTIVNGVKRSFY 2406 P +R YI ASF ++ + H+ GC+ S C+ CYKRNR+ RV+C+TIV G+ R + Sbjct 2364 PAHVFMRFYIIIASFIKLFSLFRHVAYGCSKSGCLFCYKRNRSLRVKCSTIVGGMIRYYD 2423 Query 2407 VYANGGRGFCKAHNWNCLNCDTFCAGSTFISDEVARDLSLQFKRPINPTDQSAYVVDSVT 2466 ANGG GFC H WNC++CD++ G+TFI+ E A DLS + KRPI PTD + + V V Sbjct 2424 AMANGGTGFCSKHQWNCIDCDSYKPGNTFITVEAALDLSKELKRPIQPTDVAYHTVTDVK 2483 Query 2467 VKNGALHLYFDKAGQKTYERHPLSHFVNLDNLRANNTKGSLPINVIVFDGKSKCEESAAK 2526 + L++D+ GQ+TY+ S FV+ NL + K ++V+V + + +++ Sbjct 2484 QVGCYMRLFYDRDGQRTYDDVNASLFVDYSNLLHSKVKSVPNMHVVVVENDA--DKANFL 2541 Query 2527 SASVYYSQLMCQPILLLDQALVSDVGDSTEVSVKMFDAYVDTFSATFSVPMEKLKALVAT 2586 +A+V+Y+Q + +PIL++D+ L++ T V+ MFD YVDTF + F V + L AL+AT Sbjct 2542 NAAVFYAQSLFRPILMVDKNLITTANTGTSVTETMFDVYVDTFLSMFDVDKKSLNALIAT 2601 Query 2587 AHSELAKGVALDGVLSTFVSAARQGV-VDTDVDTKDVIECLKLSHHSDIEVTGDSCNNFM 2645 AHS + +G + VL TF+S AR+ +D+DVDTK + + + + + +E+T +SCNN + Sbjct 2602 AHSSIKQGTQICKVLDTFLSCARKSCSIDSDVDTKCLADSVMSAVSAGLELTDESCNNLV 2661 Query 2646 LTYNKVENMTPRDLGACIDCNARHINAQVAKSHNVSLVWNVKDYMSLSEQLRKQIRSAAK 2705 TY K +N+ DLG I +A+H+ VAK VS +W+V + LS + +++ A Sbjct 2662 PTYLKGDNIVAADLGVLIQNSAKHVQGNVAKIAGVSCIWSVDAFNQLSSDFQHKLKKACC 2721 Query 2706 KNNIPFRLTCATTRQVVNVITTKISLKGGKVVSTWFKLLLKVTLLCVLAALFCYVIMPVH 2765 K + +LT V+V+TT SLKGG V S + + ++L+C + L+C +MP + Sbjct 2722 KTGLKLKLTYNKQMANVSVLTTPFSLKGGAVFSYFVYVCFVLSLVCFIG-LWC--LMPTY 2778 Query 2766 SLSVHDGYTNEIIGYKAIQDGVTRDIVSTDDCFANKHAGFDSWFSQRGG--SYRNDKNCP 2823 ++ D YK + +GV RD+ D CFANK FD W+ G Y N CP Sbjct 2779 TVHKSDFQLPVYASYKVLDNGVIRDVSVEDVCFANKFEQFDQWYESTFGLSYYSNSMACP 2838 Query 2824 VVAAIITREIGFIVPGLPGTVLRALNGDFLHFLPRVFSAVGNICYTPSKLIEYSDFATSA 2883 +V A++ ++ G V +P VLR LHF+ SA G CYTP I YS+F S Sbjct 2839 IVVAVVDQDFGSTVFNVPTKVLR-YGYHVLHFITHALSADGVQCYTPHSQISYSNFYASG 2897 Query 2884 CVLAAECTIFKDAMGKPVPYCYDTNLLEGSISYSELRPDTRYVLMDG-SIIQFPNTYLEG 2942 CVL++ CT+F A G P PYCY L++ + YS L P RY L + I+FP EG Sbjct 2898 CVLSSACTMFAMADGSPQPYCYTDGLMQNASLYSSLVPHVRYNLANAKGFIRFPEVLREG 2957 Query 2943 SVRVVTTFDAEYCRHGTCERSEVGVCLSTSGRWVLNNEHYRALPGVFCGVDAMNLIANIF 3002 VR+V T YCR G CE ++ G+C + +G WVLNN++YR+LPG FCG D +LI +F Sbjct 2958 LVRIVRTRSMPYCRVGLCEEADEGICFNFNGSWVLNNDYYRSLPGTFCGRDVFDLIYQLF 3017 Query 3003 TPLVQPVGALDVSASVVAGGIIAILVTCAAYYFMKFRRAFGEYNHVVAANALLFLMSFTI 3062 L QPV L ++AS +AG I+A++V YY +K +RAFG+Y +V N +++ ++F + Sbjct 3018 KGLAQPVDFLALTASSIAGAILAVIVVLVFYYLIKLKRAFGDYTSIVFVNVIVWCVNFMM 3077 Query 3063 LCLAPAYSFLPGVYSIFYLYLTFYFTNDVSFLAHLQWFAMFSPIVPFWITAIYVFCISLK 3122 L + Y L VY+I Y Y T YF +++S + HLQW M+ I+P W +Y+ + Sbjct 3078 LFVFQVYPTLSCVYAICYFYATLYFPSEISVIMHLQWLVMYGTIMPLWFCLLYISVVVSN 3137 Query 3123 HFHWFFS--NYLKKRVMFNGVTFSTFEEAALCTFLLNKEMYLRLRSETLLPLTQYNRYLA 3180 H W FS L V +G TFEE AL TF++ K+ Y +L++ L +NRYL+ Sbjct 3138 HAFWVFSYCRQLGTSVRSDG----TFEEMALTTFMITKDSYCKLKNS--LSDVAFNRYLS 3191 Query 3181 LYNKYKYFSGALDTTSYREAACCHLAKALNDFSNS-GADVLYQPPQTSITSAVLQSGFRK 3239 LYNKY+Y+SG +DT +YREAAC LAKA++ F+N+ G+DVLYQPP S++++ LQSG K Sbjct 3192 LYNKYRYYSGKMDTAAYREAACSQLAKAMDTFTNNNGSDVLYQPPTASVSTSFLQSGIVK 3251 Query 3240 MAFPSGKVEGCMVQVTCGTTTLNGLWLDDTVYCPRHVVCTAEDMLNPNYDDLLIRKSNHS 3299 M P+ KVE C+V VT G TLNGLWL D VYCPRHV+C+A DM NP+Y +LL R ++ Sbjct 3252 MVNPTSKVEPCIVSVTYGNMTLNGLWLGDKVYCPRHVICSASDMTNPDYTNLLCRVTSSD 3311 Query 3300 FLVQAGNVQLRVIGHSMQNCLLRLKVDTSNPKTPKYKFVRIQPGQTFSVLACYNGSPSGV 3359 F V + L V+ + MQ C+L L V N +TPKY F ++PG+TF+VLA YNG P G Sbjct 3312 FTVLFDRLSLTVMSYQMQGCMLVLTVTLQNSRTPKYTFGVVKPGETFTVLAAYNGKPQGA 3371 Query 3360 YQCAMRPNHTIKGSFLNGSCGSVGFNIDYDCVSFCYMHHMELPTGVHAGTDLEGKFYGPF 3419 + MR ++TIKGSFL GSCGSV + I DCV F YMH +EL TG H GTD G FYGP+ Sbjct 3372 FHVTMRSSYTIKGSFLCGSCGSVVYVIMGDCVKFVYMHQLELSTGCHTGTDFNGDFYGPY 3431 Query 3420 VDRQTAQAAGTDTTITLNVLAWLYAAVINGDRWFLNRFTTTLNDFNLVAMKYNYEPLTQD 3479 D Q Q D ++N +AWLYAA++N WF+ ++ DFN+ A+ + + D Sbjct 3432 KDAQVVQLPVQDYIQSVNFVAWLYAAILNNCNWFVQSDKCSVEDFNVWALSNGFSQVKSD 3491 Query 3480 HVDILGPLSAQTGIAVLDMCAALKELLQNGMNGRTILGSTILEDEFTPFDVVRQCSGVTF 3539 V + L++ TG+++ + AA+K L+NG GR I+GS EDE TP DV +Q +G+ Sbjct 3492 LV--IDALASMTGVSLETLLAAIKH-LKNGFQGRQIMGSCSFEDELTPSDVYQQLAGIKL 3548 Query 3540 QGKFKKIVKGTHHWMLL-TFLTSLLILVQSTQWSLFFFVYENAFLPFALGIMAVAACAML 3598 Q K ++VKG W++ TFL S I+ +W++F +V N L + V + ML Sbjct 3549 QSKRTRLVKGIVCWIMASTFLFS-CIITAFVKWTMFMYVTTN-MLSITFCALCVISLTML 3606 Query 3599 LVKHKHAFLCLFLLPSLATVAYFN-MVYMPASWVMRIMTWLELADTSLSGYRLKDCVMYA 3657 LVKHKH +L ++++P L T+ Y N +V ++ + WL S+ Y D V+Y Sbjct 3607 LVKHKHLYLTMYIIPVLFTLLYNNYLVVYKQTFRGYVYAWLSYYVPSVE-YTYTDEVIYG 3665 Query 3658 SALVL-LILMTARTVYDDAARRVWTLMNVITLVYKVYYGNSLDQAISMWALVISVTSNYS 3716 L++ ++ +T R++ + + VI++V Y G++L++ I + ++ S+ Y+ Sbjct 3666 MLLLIGMVFVTLRSINQYLFSFIMFVGRVISVVSLWYMGSNLEEEILL--MLASLFGTYT 3723 Query 3717 GVVTTIMFLARAIV-FVCVEYYPLLFITGNTLQCIMLVYCFLGYCCCCYFGLFCLLNRYF 3775 M A+ I +V V L F ++ +++ Y F+GY CY+GLF L+N F Sbjct 3724 WTTALSMAAAKVIAKWVAVNV--LYFTDIPQIKIVLVCYLFIGYIISCYWGLFSLMNSLF 3781 Query 3776 RLTLGVYDYLVSTQEFRYMNSQGLLPPKSSIDAFKLNIKLLGIGGKPCIKVATVQSKMSD 3835 R+ LGVY+Y +S QE RYMN+ GL PPK+S +A LN KLLGIGG P I+V+ QSK++D Sbjct 3782 RMPLGVYNYKISVQELRYMNANGLRPPKNSFEALMLNFKLLGIGGVPIIEVSQFQSKLTD 3841 Query 3836 VKCTSVVLLSVLQQLRVESSSKLWAQCVQLHNDILLAKDTTEAFEKMVSLLSVLLSMQGA 3895 VKC +VVLL+ LQ L V S+SKLW C LHN+IL D AFEK+ LL VL + A Sbjct 3842 VKCANVVLLNCLQHLHVASNSKLWQYCSTLHNEILATSDLGVAFEKLAQLLIVLFANPAA 3901 Query 3896 VD------INKLCEEMLDNRATLQAIASEFSSLPSYAAYATAQEAYEQAVSNGDS-EVVL 3948 VD I ++C++ + LQA+ SEF ++ S+ Y A++ ++A S+G + + L Sbjct 3902 VDSKCLTSIEEVCDDYAKDNTVLQALQSEFVNMASFVEYEVAKKNLDEACSSGSANQQQL 3961 Query 3949 KKLKKSLNVAKSEFDHDAAMQRKLEKMADQAMTQMYKQARSEDKRAKVTSAMQTMLFTML 4008 K+L+K+ N+AKS ++ D A+ RKLE+MAD A+T MYK+AR DK++KV SA+QTMLF+M+ Sbjct 3962 KQLEKACNIAKSAYERDRAVARKLERMADLALTNMYKEARINDKKSKVVSALQTMLFSMV 4021 Query 4009 RKLDNDALNNIINNARDGCVPLNIIPLTTAAKLMVVVPDYGTYKNTCDGNTFTYASALWE 4068 RKLDN ALN+I++NA GCVPLN IP A L ++VPD Y D TYA +W+ Sbjct 4022 RKLDNQALNSILDNAVKGCVPLNAIPSLAANTLTIIVPDKSVYDQVVDNVYVTYAGNVWQ 4081 Query 4069 IQQVVDADSKIVQLSEINMDNSPNLAWPLIVTALRAN--SAVKLQNNELSPVALRQMSCA 4126 IQ + D+D QL EI S + WPL++ A R N SA LQNNEL P L+ Sbjct 4082 IQTIQDSDGTNKQLHEI----SDDCNWPLVIIANRHNEVSATALQNNELMPAKLKTQVVN 4137 Query 4127 AGTTQTACTDDNALAYYNNAKGGRFVLALLSDHQDLKWARFPKSDGTGTIYTELEPPCRF 4186 +G QT T YYNN+ G+ V A+LSD LK+ + K DG + EL+PPC+F Sbjct 4138 SGPDQTCNTPTQ--CYYNNSYNGKIVYAILSDVDGLKYTKILKDDGNFVV-LELDPPCKF 4194 Query 4187 VTDTPKGPKVKYLYFIKGLNNLNRGMVLGSLAATVRLQAGNATEVPANSTVLSFCAFAVD 4246 KG K+KYLYF+KG N L RG V+G++++TVRLQAG ATE +NS++LS CAF+VD Sbjct 4195 TVQDVKGLKIKYLYFVKGCNTLARGWVVGTISSTVRLQAGTATEYASNSSILSLCAFSVD 4254 Query 4247 PAKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPEANMDQESFGGASCCLYCRCHID 4306 P K Y D++ GG PI NCVKMLC H GTG AITV P+A Q+S+GGAS C+YCR ++ Sbjct 4255 PKKTYLDFIQQGGTPIANCVKMLCDHAGTGMAITVKPDATTSQDSYGGASVCIYCRARVE 4314 Query 4307 HPNPKGFCDLKGKYVQIPTTCANDPVGFTLRNTVCTVCGMWKGYGCSCDQLREPMMQSAD 4366 HP+ G C L+GK+VQ+P DPV + L + VC VCG W+ CSC + +QS D Sbjct 4315 HPDVDGLCKLRGKFVQVPVG-IKDPVSYVLTHDVCQVCGFWRDGSCSCVS-TDTTVQSKD 4372 Query 4367 ASTFLNGFAV 4376 + FLNGF V Sbjct 4373 -TNFLNGFGV 4381 Range 2: 1273 to 1427 Score:87.0 bits(214), Expect:4e-15, Method:Compositional matrix adjust., Identities:51/155(33%), Positives:79/155(50%), Gaps:2/155(1%) Query 1007 LTDNVAIKCIDIVKEAQSAKPTVIVNAANTHLKHGGGVAGALNKATNGAMQNESDEYIRQ 1066 +T NV DI+K ++ K V+VN AN H+ HGGGVA A+ A E+ + ++ Sbjct 1273 ITPNVCFVKGDIIKVSKRVKAEVVVNPANGHMAHGGGVAKAIAVAAGQQFVKETTDMVKS 1332 Query 1067 NGPLTVGGSCLLSGHNLAEKCLHVVGPN--LNAGEDVQLLKRAYENFNSQDVLLAPLLSA 1124 G G + +G L + L+VVGP+ + LL+R Y++ N D ++ L+SA Sbjct 1333 KGVCATGDCYVSTGGKLCKTVLNVVGPDARTQGKQSYALLERVYKHLNKYDCVVTTLISA 1392 Query 1125 GIFGAKPLQSLKMCVEIVRTQVYLAVNDKSLYDQI 1159 GIF SL + + QV L N++ +D I Sbjct 1393 GIFSVPSDVSLTYLLGTAKKQVVLVSNNQEDFDLI 1427 Range 3: 748 to 1016 Score:69.3 bits(168), Expect:1e-09, Method:Compositional matrix adjust., Identities:71/286(25%), Positives:126/286(44%), Gaps:28/286(9%) Query 714 RGLYRQCIRGKEQLQLLMP---LKAPKEVTFLEGDAHDTVLTSEEVVLKSGELEALETPI 770 RGL + L MP K ++ +L+G D L V + + L TP Sbjct 748 RGLLHSSQLPLDVYDLTMPSQVQKTKQKPIYLKGSGSDFSLADSVVEVVTTSL----TPC 803 Query 771 DSFTSGAVVGTPVCINGLMLLELENKEQYCALSPGLLAT-NNVFRLKGGAPVKG--VTFG 827 ++ V +CI + + + Y + G + + +R+ P G VTF Sbjct 804 -GYSEPPKVADKICIVDNVYMAKAGDKYYPVVVDGHVGLLDQAWRV----PCAGRCVTFK 858 Query 828 ED-TVLEVQGY-KNVKITFELDVRVDKVLNEKCSVYTVESGTEVTEFACVVAEAVVKTLQ 885 E TV E+ K +K+ +ELD + +LN C V+ V+ ++ EF VV +A+ + L Sbjct 859 EQPTVNEIASTPKTIKVFYELDKDFNTILNTACGVFEVDDTVDMEEFYAVVIDAIEEKLS 918 Query 886 PVSDLL---TPMGIDLDEWSVATFYLFDDAGEEKLSSRMYCSFYPPDEEEDCEECEDEEE 942 P +L + L + + +LFD+AGEE L+ ++YC+F P++++ EE Sbjct 919 PCKELEGVGAKVSAFLQKLEDNSLFLFDEAGEEVLAPKLYCAFTAPEDDDFLEE------ 972 Query 943 TCEHEYGTEDDYKGLPLEFGASTETPHVEEEEEEEDWLDDAIEAEP 988 + + + L ++ E E+EE + L+D ++ P Sbjct 973 --SGVEEDDVEGEETDLTVTSAGEPCVASEQEESSEILEDTLDDGP 1016 >RecName: Full=Replicase polyprotein 1a; Short=pp1a; AltName: Full=ORF1a polyprotein; Contains: RecName: Full=Non-structural protein 1; Short=nsp1; AltName: Full=p28; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p65; Contains: RecName: Full=Papain-like protease nsp3; Short=PL-PRO; AltName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=PL1-PRO/PL2-PRO; AltName: Full=PL1/PL2; AltName: Full=PL2-PRO; AltName: Full=Papain-like proteinases 1/2; AltName: Full=p210; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; AltName: Full=Peptide HD2; AltName: Full=p44; Contains: RecName: Full=3C-like proteinase nsp5; Short=3CL-PRO; Short=3CLp; AltName: Full=M-PRO; AltName: Full=nsp5; AltName: Full=p27; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; AltName: Full=p10; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; AltName: Full=p22; Contains: RecName: Full=RNA-capping enzyme subunit nsp9; AltName: Full=Non-structural protein 9; Short=nsp9; AltName: Full=p12; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; AltName: Full=p15; Contains: RecName: Full=Non-structural protein 11; Short=nsp11 [Murine hepatitis virus strain 2] Sequence ID: P0C6U9.1 Length: 4416 Range 1: 1509 to 4414 Score:1870 bits(4843), Expect:0.0, Method:Compositional matrix adjust., Identities:1117/2981(37%), Positives:1636/2981(54%), Gaps:164/2981(5%) Query 1485 SYSGQRTELGVEFLKRGDKIVYHTTGSPIEFHLDG--EVLPLDKLKSLLSLREVKTIKVF 1542 S G RT V++ + +I + G + +G +V + ++++LL+ + V Sbjct 1509 SVDGVRT---VKYFECPGEIFVSSQGKKFGYVQNGSFKVASVSQIRALLA----NKVDVL 1561 Query 1543 TTVDNTNLHTHIVDMSMTYGQQFGPTYLDGADVTKIKPHVNHEGKTFF----VLPSDDTL 1598 TVD N + V +G+ G + DG +VTK++ H+GK FF + +D Sbjct 1562 CTVDGVNFRSCCVAEGEVFGKTLGSVFCDGINVTKVRCSAIHKGKVFFQYSGLSAADLVA 1621 Query 1599 RSEAFEYYHTIDESFLGRYMSALNHTKKWKFPQVGGLTSIKWADNNCYLSSVLLALQQVE 1658 ++AF + DE L +Y + L KW G + K ++NNCY++ L LQ + Sbjct 1622 VTDAFGF----DEPQLLKYYNMLGMC-KWPVVVCGNYFAFKQSNNNCYINVACLMLQHLS 1676 Query 1659 VKFNAPALQEAYYRARAGDAANFCALILAYSNKTVGELGDVRETMTHLLQHANLESAKRV 1718 +KF+ QEA+ R+G F +L+LA + E D + M +L+ A+L A Sbjct 1677 LKFHKWQWQEAWNEFRSGKPLRFVSLVLAKGSFKFNEPSDSTDFMRVVLREADLSGATCD 1736 Query 1719 LNVVCKHCGQKTTTLKGVEAVMYMGTLSYDELKTGVSIPCVCGRNATQYLVQQESSFVMM 1778 VCK CG K KGV+AVM+ GTL +L G +I C CG N + Q F++ Sbjct 1737 FEFVCK-CGVKQEQRKGVDAVMHFGTLDKGDLAKGYTIACTCG-NKLVHCTQLNVPFLIC 1794 Query 1779 SAPPAEYKLQQGAFLCANEYTGNYQCGHYTHITAKETLYRVDGAHLTKMSEYKGPVTDVF 1838 S P KL + AN +TG GHYTH+ K D +++K+SE KG TD Sbjct 1795 SNKPEGKKLPDDV-VAANIFTGG-SLGHYTHVKCKPKYQLYDACNVSKVSEAKGNFTDCL 1852 Query 1839 Y-KETSYTTAIKPVSYKLDGVTYTEIEPKLDGYYKKGNAYYTEQPIDL-VPTQPMPNASF 1896 Y K T + K ++ LD V E P L YY + YYT+ I T + Sbjct 1853 YLKNLKQTFSSKLTTFYLDDVKCVEYNPDLSQYYCESGKYYTKPIIKAQFRTFEKVEGVY 1912 Query 1897 DNFKLTCSNTKFADDLNQMTGFK-KPASRELTVTFFPDLNGDVVAIDYRHYSTSFKKGAK 1955 NFKL A+ N GF E +T +P GDVV Y + + G Sbjct 1913 TNFKLV--GHSIAEKFNAKLGFDCNSPFTEYKITEWPTATGDVVLASDDLYVSRYSGGCV 1970 Query 1956 LVHKPILW--HINQTTNKTTY--KPNIWCLRCLWSTKPVDTSNSFE-------VLVVEDT 2004 KP++W H + TY +P++ C ++ PVD S + VLV T Sbjct 1971 TFGKPVIWLGHEEASLKSLTYFNRPSVVCEN-KFNVLPVDVSEPTDKGPVPAAVLV---T 2026 Query 2005 QGMDNLACESQTTTSEEVVENPTVQKEIIE----------CDVKTTEVVG---------N 2045 + A T ++V + +V +++ DVK ++ G + Sbjct 2027 GALSGAATAPGTAKEQKVCASDSVVDQVVSGFLSDLSGATVDVKEVKLNGVKKPIKVEDS 2086 Query 2046 VILKPSEEGVKVTQELGHEDLMAAYVEETSITIKKPNELSLALGLKTLATHGAAAINSVP 2105 V++ KV + L D+ ++ + NELS + T+ + V Sbjct 2087 VVVNDPTSETKVVKSLSIVDVYDMFLTGCRYVVWMANELSRLVNSPTVREY-------VK 2139 Query 2106 W--SKILAYVKPFL---GQTAVITSNCIKKCVQRVFSNYMPYVITLLFQLCTFTKSTNSR 2160 W +KI+ K L + + +K V +S + F C N+ Sbjct 2140 WGMTKIVIPAKLVLLRDEKQEFVAPKVVKAKVIACYS-----AVKWFFLYCFSWIKFNTD 2194 Query 2161 IKASLPTTIAKNSVKSVAKLCLDVCINYVKSPKFSKLFTIVMWLLLL-------SICLGS 2213 K T +A ++ L + S+ F +V + LL ++ L Sbjct 2195 NKVIYTTEVASKLTFNLCCLAFKNALQTFNWNVVSRGFFLVATVFLLWFNFLYANVILSD 2254 Query 2214 L---------TYVTAVLGVCLSSLGVPSYCDGVRELYINSSNVTTMDFCQGYFPCSVCLS 2264 T+V ++ ++ G+ + CD LY S FC G C +C S Sbjct 2255 FYLPNIGFFPTFVGQIVAWVKTTFGIFTLCD----LYQVSDVGYRSSFCNGSMVCELCFS 2310 Query 2265 GLDSLDSYPALETIQ-VTISSYKLD-LTFLGLAAEWLLAYMLFTKFFY-LLGLSAIMQAF 2321 G D LD+Y A+ +Q V D ++ L E ++ Y L+T FY L GL MQ Sbjct 2311 GFDMLDNYDAINVVQHVVDRRVSFDYISLFKLVVELVIGYSLYTVCFYPLFGLIG-MQLL 2369 Query 2322 FGYFASHFISNS--WLMWFIISIVQMAPVSAMVRMYIFFASFYYVWKSYVHIMDGCTSST 2379 + F+ + W F + + M P ++R YI + Y ++ H+M GC+ Sbjct 2370 TTWLPEFFMLETMHWSARFFVFVANMLPAFTLLRFYIVVTAMYKIFCLCRHVMYGCSRPG 2429 Query 2380 CMMCYKRNRATRVECTTIVNGVKRSFYVYANGGRGFCKAHNWNCLNCDTFCAGSTFISDE 2439 C+ CYKRNR+ RV+C+T+V G R + V ANGG GFC H WNCLNC F G+TFI+ E Sbjct 2430 CLFCYKRNRSVRVKCSTVVGGTLRYYDVMANGGTGFCAKHQWNCLNCSAFGPGNTFITHE 2489 Query 2440 VARDLSLQFKRPINPTDQSAYVVDSVTVKNGALHLYFDKAGQKTYERHPLSHFVNLDNLR 2499 A DLS + KRP+NPTD + Y+V V ++ L++++ GQ+ Y+ S FV+++ L Sbjct 2490 AAADLSKELKRPVNPTDSAYYLVTEVKQVGCSMRLFYERDGQRVYDDVSASLFVDMNGLL 2549 Query 2500 ANNTKGSLPINVIVFDGKSKCEESAAKSASVYYSQLMCQPILLLDQALVSDVGDSTEVSV 2559 + KG +V+V + ++ +++ +A+V+Y+Q + +P+LL+++ L++ VS Sbjct 2550 HSKVKGVPETHVVVVENEA--DKAGFLNAAVFYAQSLYRPMLLVEKKLITTANTGLSVSQ 2607 Query 2560 KMFDAYVDTFSATFSVPMEKLKALVATAHSELAKGVALDGVLSTFVSAARQG-VVDTDVD 2618 MFD YVD+ V + L + V AH+ L +GV L+ V+ TF+ AR+ +D+DV+ Sbjct 2608 TMFDLYVDSLLGVLDVDRKSLTSFVNAAHNSLKEGVQLEQVMDTFIGCARRKCAIDSDVE 2667 Query 2619 TKDVIECLKLSHHSDIEVTGDSCNNFMLTYNKVENMTPRDLGACIDCNARHINAQVAKSH 2678 TK + + + + ++ ++ T +SCNN + TY K + + DLG I NA+H+ A VAK+ Sbjct 2668 TKSITKSIMSAVNAGVDFTDESCNNLVPTYVKSDTIVAADLGVLIQNNAKHVQANVAKAA 2727 Query 2679 NVSLVWNVKDYMSLSEQLRKQIRSAAKKNNIPFRLTCATTRQVVNVITTKISLKGGKVVS 2738 NV+ +W+V + LS L+ ++R A K + +LT V ++TT SLKGG V S Sbjct 2728 NVACIWSVDAFNQLSADLQHRLRKACSKTGLKIKLTYNKQEANVPILTTPFSLKGGAVFS 2787 Query 2739 TWFKLLLKVTLLCVLAALFCYVIMPVHSLSVHDGYTNEIIGYKAIQDGVTRDIVSTDDCF 2798 + L V L+C + + +MP +++ D +K I +GV RD+ TD CF Sbjct 2788 KVLQWLFVVNLICFIVL---WALMPTYAVHKSDMQLPLYASFKVIDNGVLRDVTVTDACF 2844 Query 2799 ANKHAGFDSWFSQRGG--SYRNDKNCPVVAAIITREIGFIVPGLPGTVLRALNGDFLHFL 2856 ANK FD W+ G YRN + CPVV A+I ++IG+ + +P VLR LHF+ Sbjct 2845 ANKFIQFDQWYESTFGLVYYRNSRACPVVVAVIDQDIGYTLFNVPTKVLR-YGFHVLHFI 2903 Query 2857 PRVFSAVGNICYTPSKLIEYSDFATSACVLAAECTIFKDAMGKPVPYCYDTNLLEGSISY 2916 F+ CYTP I Y +F S CVL++ CT+ A G P PYCY ++ + Y Sbjct 2904 THAFATDSVQCYTPHMQIPYDNFYASGCVLSSLCTMLAHADGTPHPYCYTEGIMHNASLY 2963 Query 2917 SELRPDTRYVLMDGS-IIQFPNTYLEGSVRVVTTFDAEYCRHGTCERSEVGVCLSTSGRW 2975 L P RY L + + I+FP EG VR+V T YCR G CE +E GVC + + W Sbjct 2964 DSLAPHVRYNLANSNGYIRFPEVVSEGIVRIVRTRSMTYCRVGLCEDAEEGVCFNFNSSW 3023 Query 2976 VLNNEHYRALPGVFCGVDAMNLIANIFTPLVQPVGALDVSASVVAGGIIAILVTCAAYYF 3035 VLNN +YRA+PG FCG +A +LI + LV+P+ ++AS VAG I+AI+V A YY Sbjct 3024 VLNNPYYRAMPGTFCGRNAFDLIHQVLGGLVRPIDFFALTASSVAGAILAIIVVLAFYYL 3083 Query 3036 MKFRRAFGEYNHVVAANALLFLMSFTILCLAPAYSFLPGVYSIFYLYLTFYFTNDVSFLA 3095 +K +RAFG+Y VV N +++ ++F +L + Y L +Y+ FY Y T YF +++S + Sbjct 3084 IKLKRAFGDYTSVVVINVIVWCINFLMLFVFQVYPTLSCLYACFYFYTTLYFPSEISVVM 3143 Query 3096 HLQWFAMFSPIVPFWITAIYVFCISLKHFHWFFSNYLKK---RVMFNGVTFSTFEEAALC 3152 HLQW M+ I+P W IYV + H W FS Y +K V +G TFEE +L Sbjct 3144 HLQWLVMYGAIMPLWFCIIYVAVVVSNHALWLFS-YCRKLGTEVRSDG----TFEEMSLT 3198 Query 3153 TFLLNKEMYLRLRSETLLPLTQYNRYLALYNKYKYFSGALDTTSYREAACCHLAKALNDF 3212 TF++ KE Y +L++ + +NRYL+LYNKY+YFSG +DT +YREAAC LAKA+ F Sbjct 3199 TFMITKESYCKLKNS--VSDVAFNRYLSLYNKYRYFSGKMDTAAYREAACSQLAKAMETF 3256 Query 3213 S-NSGADVLYQPPQTSITSAVLQSGFRKMAFPSGKVEGCMVQVTCGTTTLNGLWLDDTVY 3271 + N+G DVLYQPP S+T++ LQSG KM FP+ KVE C+V VT G TLNGLWLDD VY Sbjct 3257 NHNNGNDVLYQPPTASVTTSFLQSGIVKMVFPTSKVEPCVVSVTYGNMTLNGLWLDDKVY 3316 Query 3272 CPRHVVCTAEDMLNPNYDDLLIRKSNHSFLVQAGNVQLRVIGHSMQNCLLRLKVDTSNPK 3331 CPRHV+C++ DM +P+Y +LL R + F V +G + L V+ + MQ LL L V NP Sbjct 3317 CPRHVICSSADMTDPDYSNLLCRVISSDFCVMSGRMSLTVMSYQMQGSLLVLTVTLQNPN 3376 Query 3332 TPKYKFVRIQPGQTFSVLACYNGSPSGVYQCAMRPNHTIKGSFLNGSCGSVGFNIDYDCV 3391 TPKY F ++PG+TF+VLA YNG G + MR ++TIKGSFL GSCGSVG+ + D V Sbjct 3377 TPKYSFGVVKPGETFTVLAAYNGKSQGAFHVTMRSSYTIKGSFLCGSCGSVGYVLTGDSV 3436 Query 3392 SFCYMHHMELPTGVHAGTDLEGKFYGPFVDRQTAQAAGTDTTITLNVLAWLYAAVINGDR 3451 F YMH +EL TG H GTD G FYGP+ D Q Q D T T+NV+AWLYAA++N Sbjct 3437 RFVYMHQLELSTGCHTGTDFSGNFYGPYRDAQVVQLPVQDYTQTVNVVAWLYAAILNRCN 3496 Query 3452 WFLNRFTTTLNDFNLVAMKYNYEPLTQDHVDILGPLSAQTGIAVLDMCAALKELLQNGMN 3511 WF+ + +L +FN+ AM + + D V L L++ TG+ V + AA+K L +G Sbjct 3497 WFVQSDSCSLEEFNVWAMTNGFSSIKADLV--LDALASMTGVTVEQILAAIKRLY-SGFQ 3553 Query 3512 GRTILGSTILEDEFTPFDVVRQCSGVTFQGKFKKIVKGTHHWMLLTFLTSLLILVQSTQW 3571 G+ ILGS +LEDE TP DV +Q +GV Q K ++VKGT W+L + L I+ +W Sbjct 3554 GKQILGSCVLEDELTPSDVYQQLAGVKLQSKRTRVVKGTCCWILASTLLFCSIISAFVKW 3613 Query 3572 SLFFFVYENAFLPFALGIMAVAAC----AMLLVKHKHAFLCLFLLPSLATVAYFN-MVYM 3626 ++F +V + LG+ A C AMLLVKHKH +L +F++P L T+ Y N +V Sbjct 3614 TMFMYVTTH-----MLGVTLCALCFVSFAMLLVKHKHLYLTMFIMPVLCTLFYTNYLVVY 3668 Query 3627 PASWVMRIMTWLELADTSLSGYRLKDCVMYASA-LVLLILMTARTVYDDAARRVWTLMNV 3685 S+ WL ++ Y D V+Y LV ++ +T R++ D ++ + + Sbjct 3669 KQSFRGLAYAWLSHFVPAVD-YTYMDEVLYGVVLLVAMVFVTMRSINHDVFSVMFLVGRL 3727 Query 3686 ITLVYKVYYGNSLDQAISMWALVISVTSNYSGVVTTIMFLARAIVFVCVEYYPLLFITG- 3744 ++LV Y+G +L++ + ++ + S+ Y+ TT++ LA A V +L+ T Sbjct 3728 VSLVSMWYFGANLEEEVLLF--LTSLFGTYTW--TTMLSLATAKVIAKWLAVNVLYFTDV 3783 Query 3745 NTLQCIMLVYCFLGYCCCCYFGLFCLLNRYFRLTLGVYDYLVSTQEFRYMNSQGLLPPKS 3804 ++ ++L Y +GY CCCY+G+ LLN FR+ LGVY+Y +S QE RYMN+ GL PP++ Sbjct 3784 PQVKLVLLSYLCIGYVCCCYWGVLSLLNSIFRMPLGVYNYKISVQELRYMNANGLRPPRN 3843 Query 3805 SIDAFKLNIKLLGIGGKPCIKVATVQSKMSDVKCTSVVLLSVLQQLRVESSSKLWAQCVQ 3864 S +A LN KLLGIGG P I+V+ +QS+++DVKC +VVLL+ LQ L + SSSKLW C Sbjct 3844 SFEALVLNFKLLGIGGVPVIEVSQIQSRLTDVKCVNVVLLNCLQHLHIASSSKLWQYCST 3903 Query 3865 LHNDILLAKDTTEAFEKMVSLLSVLLSMQGAVD------INKLCEEMLDNRATLQAIASE 3918 LHN+IL D + AF+K+ LL VL + AVD I ++ ++ + + LQA+ SE Sbjct 3904 LHNEILATSDLSVAFDKLAQLLVVLFANPAAVDSKCLASIEEVSDDYVRDSTVLQALQSE 3963 Query 3919 FSSLPSYAAYATAQEAYEQAVSNGDS-EVVLKKLKKSLNVAKSEFDHDAAMQRKLEKMAD 3977 F ++ S+ Y A++ ++A ++G + + +K+L+K+ N+AKS ++ D A+ RKLE+MAD Sbjct 3964 FVNMASFVEYELAKKNLDEAKASGSANQQQIKQLEKACNIAKSAYERDRAVARKLERMAD 4023 Query 3978 QAMTQMYKQARSEDKRAKVTSAMQTMLFTMLRKLDNDALNNIINNARDGCVPLNIIPLTT 4037 A+T MYK+AR DK++KV SA+QTMLF+M+RKLDN ALN+I++NA GCVPLN IP T Sbjct 4024 LALTNMYKEARINDKKSKVVSALQTMLFSMIRKLDNQALNSILDNAVKGCVPLNAIPSLT 4083 Query 4038 AAKLMVVVPDYGTYKNTCDGNTFTYASALWEIQQVVDADSKIVQLSEINMDNSPNLAWPL 4097 + L ++VPD + D TYA +W IQ + DAD + QL+EI++ N+ WPL Sbjct 4084 SNTLTIIVPDKQVFDQVVDNVYVTYAGNVWHIQSIQDADGAVKQLNEIDV----NITWPL 4139 Query 4098 IVTALRAN--SAVKLQNNELSPVALRQMSCAAGTTQTACTDDNALAYYNNAKGGRFVLAL 4155 ++ A R N S+V LQNNEL P LR +G+ T YYN G+ V A+ Sbjct 4140 VIAANRHNEVSSVVLQNNELMPQKLRTQVVNSGSDMNCNTPTQ--CYYNTTGMGKIVYAI 4197 Query 4156 LSDHQDLKWARFPKSDGTGTIYTELEPPCRFVTDTPKGPKVKYLYFIKGLNNLNRGMVLG 4215 LSD LK+ + K DG + EL+PPC+F KG K+KYLYF+KG N L RG V+G Sbjct 4198 LSDCDGLKYTKIVKEDGNCVV-LELDPPCKFSVQDVKGLKIKYLYFVKGCNTLARGWVVG 4256 Query 4216 SLAATVRLQAGNATEVPANSTVLSFCAFAVDPAKAYKDYLASGGQPITNCVKMLCTHTGT 4275 +L++TVRLQAG ATE +NS + S CAF+VDP K Y DY+ GG P+TNCVKMLC H GT Sbjct 4257 TLSSTVRLQAGTATEYASNSAIRSLCAFSVDPKKTYLDYIQQGGAPVTNCVKMLCDHAGT 4316 Query 4276 GQAITVTPEANMDQESFGGASCCLYCRCHIDHPNPKGFCDLKGKYVQIPTTCANDPVGFT 4335 G AIT+ PEA +Q+S+GGAS C+YCR ++HP+ G C L+GK+VQ+P DPV + Sbjct 4317 GMAITIKPEATTNQDSYGGASVCIYCRSRVEHPDVDGLCKLRGKFVQVPLG-IKDPVSYV 4375 Query 4336 LRNTVCTVCGMWKGYGCSCDQLREPMMQSADASTFLNGFAV 4376 L + VC VCG W+ CSC QS D + FLNGF V Sbjct 4376 LTHDVCQVCGFWRDGSCSCVGTGS-QFQSKD-TNFLNGFGV 4414 Range 2: 834 to 1013 Score:71.2 bits(173), Expect:2e-10, Method:Compositional matrix adjust., Identities:57/183(31%), Positives:87/183(47%), Gaps:11/183(6%) Query 822 KGVTFGED-TVLEVQGYKNVKITFELDVRVDKVLNEKCSVYTVESGTEVTEFACVVAEAV 880 K V F + V E+ + +KI F LD D VL++ CS + V+ + E VV +AV Sbjct 834 KKVEFNDKPKVKEIPSTRKIKINFALDATFDSVLSKACSEFEVDKDVTLDELLDVVLDAV 893 Query 881 VKTLQPVSD---LLTPMGIDLDEWSVATFYLFDDAGEEKLSSRMYCSFYPPDEEEDCEEC 937 TL P + + T + L+ + YLFD+ GEE ++ +MYCSF PD +EDC Sbjct 894 ESTLSPCKEHDVIGTKVCALLNRLAEDYVYLFDEGGEEVIAPKMYCSFSAPD-DEDCVA- 951 Query 938 EDEEETCEHEYGTEDDYKGLPL----EFGASTETPHVEEEEEEEDWLDDAIEAEPEPEPL 993 D + E++ DD L E G + V E + D + +A + E +P+ Sbjct 952 ADVVDADENQGDDADDSAALVTDTQEEDGVAKGQVGVAESDARLDQV-EAFDIEKVEDPI 1010 Query 994 PEE 996 E Sbjct 1011 LNE 1013 Range 3: 1267 to 1421 Score:61.6 bits(148), Expect:2e-07, Method:Compositional matrix adjust., Identities:52/155(34%), Positives:80/155(51%), Gaps:2/155(1%) Query 1007 LTDNVAIKCIDIVKEAQSAKPTVIVNAANTHLKHGGGVAGALNKATNGAMQNESDEYIRQ 1066 +T NV D++K + VIVN AN + HG GVAGA+ KA + E+ + ++ Sbjct 1267 ITPNVCFVKGDVIKVLRRVGAEVIVNPANGRMAHGAGVAGAIAKAAGKSFIKETADMVKN 1326 Query 1067 NGPLTVGGSCLLSGHNLAEKCLHVVGPNL--NAGEDVQLLKRAYENFNSQDVLLAPLLSA 1124 G VG +G NL + L++VGP+ + + L+RAY++ N D ++ L+SA Sbjct 1327 QGVCQVGECYESTGGNLCKTVLNIVGPDARGHGKQCYSFLERAYQHINKCDDVVTTLISA 1386 Query 1125 GIFGAKPLQSLKMCVEIVRTQVYLAVNDKSLYDQI 1159 GIF SL + +V V L N+K +D I Sbjct 1387 GIFSVPTDVSLTYLIGVVTKNVILVSNNKDDFDVI 1421 >RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Host translation inhibitor nsp1; Short=nsp1; AltName: Full=p28; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p65; Contains: RecName: Full=Papain-like proteinase nsp3; Short=PL-PRO; AltName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=p210; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; AltName: Full=Peptide HD2; AltName: Full=p44; Contains: RecName: Full=3C-like proteinase nsp5; Short=3CL-PRO; Short=3CLp; AltName: Full=M-PRO; AltName: Full=nsp5; AltName: Full=p27; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; AltName: Full=p10; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; AltName: Full=p22; Contains: RecName: Full=Viral protein genome-linked nsp9; AltName: Full=Non-structural protein 9; Short=nsp9; AltName: Full=RNA-capping enzyme subunit nsp9; AltName: Full=p12; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; AltName: Full=p15; Contains: RecName: Full=RNA-directed RNA polymerase nsp12; Short=Pol; Short=RdRp; AltName: Full=nsp12; AltName: Full=p100; Contains: RecName: Full=Helicase nsp13; Short=Hel; AltName: Full=nsp13; AltName: Full=p67; Contains: RecName: Full=Guanine-N7 methyltransferase nsp14; Short=ExoN; AltName: Full=nsp14; Contains: RecName: Full=Uridylate-specific endoribonuclease nsp15; AltName: Full=NendoU; AltName: Full=nsp15; AltName: Full=p35; Contains: RecName: Full=2'-O-methyltransferase nsp16; AltName: Full=nsp16 [Bovine coronavirus strain Quebec] Sequence ID: P0C6X0.1 Length: 7059 Range 1: 1565 to 4377 Score:1867 bits(4835), Expect:0.0, Method:Compositional matrix adjust., Identities:1088/2885(38%), Positives:1614/2885(55%), Gaps:123/2885(4%) Query 1539 IKVFTTVDNTNLHTHIVDMSMTYGQQFGPTYLDGADVTKIKPHVNHEGKTFFVLPSDDTL 1598 + + TVD N V + ++G+ G + DG +VTK K +N++GK FF D L Sbjct 1565 VDILLTVDGVNFTNRFVPVGESFGKSLGNVFCDGVNVTKHKCDINYKGKVFFQF---DNL 1621 Query 1599 RSE---AFEYYHTIDESFLGRYMSALNHTKKWKFPQVGGLTSIKWADNNCYLSSVLLALQ 1655 SE A D+ L Y + L + KW+ G + K A+NNC+++ L LQ Sbjct 1622 SSEDLKAVRSSFNFDQKELLAYYNMLVNCSKWQVVFNGKYFTFKQANNNCFVNVSCLMLQ 1681 Query 1656 QVEVKFNAPALQEAYYRARAGDAANFCALILAYSNKTVGELGDVRETMTHLLQHANLESA 1715 + +KF QEA+ R+G A F +L+LA G+ D R+ + + +L A Sbjct 1682 SLNLKFKIVQWQEAWLEFRSGRPARFVSLVLAKGGFKFGDPADSRDFLRVVFSQVDLTGA 1741 Query 1716 KRVLNVVCKHCGQKTTTLKGVEAVMYMGTLSYDELKTGVSIPCVCGRNATQYLVQQESSF 1775 + CK CG K GV+AVM+ GTLS ++L+ G ++ C CG+ + V+ + F Sbjct 1742 ICDFEIACK-CGVKQEQRTGVDAVMHFGTLSREDLEIGYTVDCSCGKKLI-HCVRFDVPF 1799 Query 1776 VMMSAPPAEYKLQQGAFLCANEYTGNYQCGHYTHITAKETLYRVDGAHLTKMSEYKGPVT 1835 ++ S PA KL +G AN + G+ + GHY H+ +++ D +++ K+++ G ++ Sbjct 1800 LICSNTPASVKLPKGVG-SANIFKGD-KVGHYVHVKCEQSYQLYDASNVKKVTDVTGNLS 1857 Query 1836 DVFY-KETSYTTAIKPVSYKLDGVTYTEIEPKLDGYYKKGNAYYTEQPIDL-VPTQPMPN 1893 D Y K T +Y LD V E +P L YY G YYT++ I T + Sbjct 1858 DCLYLKNLKQTFKSVLTTYYLDDVKKIEYKPDLSQYYCDGGKYYTQRIIKAQFKTFEKVD 1917 Query 1894 ASFDNFKLTCSNTKFADDLNQMTGFKKPAS-RELTVTFFPDLNGDVVAIDYRHYSTSFKK 1952 + NFKL D LN GF E VT +P GDVV Y +++ Sbjct 1918 GVYTNFKLI--GHTVCDILNAKLGFDSSKEFVEYKVTEWPTATGDVVLATDDLYVKRYER 1975 Query 1953 GAKLVHKPILW--HINQTTNKTTYKPNIWCLRCLWSTKPVDTSNSFEVLVVEDTQGMDNL 2010 G KP++W H + N TY ++ + N F+VL V+D ++ Sbjct 1976 GCITFGKPVIWLSHEQASLNSLTY----------FNRPLLVDENKFDVLKVDDVDDGGDI 2025 Query 2011 ACESQTTTSEEV--VENPTVQKEIIECDVKTTEVVGNVILKPSEEGVKVTQELGHEDLMA 2068 + ES +E+ ++ V+K +V +VI+ +K + L D+ Sbjct 2026 S-ESDAKEPKEINIIKLSGVKKPF--------KVEDSVIVNDDTSEIKYVKSLSIVDVYD 2076 Query 2069 AYVEETSITIKKPNELSLALGLKTLA--THGAAAINSVPWSKI-LAYVKPFLGQTAVITS 2125 ++ ++ N LS A+ + T+ + S+P + L +KP + Sbjct 2077 MWLTGCRCVVRTANALSRAVNVPTIRKFIKFGMTLVSIPIDLLNLREIKPVFNVVKAV-R 2135 Query 2126 NCIKKCVQRVFSNYMPYVITLLF--------QLCTFTKSTNSRIKASLPTTIAKNSVKS- 2176 N I C N++ ++ LLF +T S++ L KN+ + Sbjct 2136 NKISACF-----NFIKWLFVLLFGWIKISADNKVIYTTEVASKLTCKLVALAFKNAFLTF 2190 Query 2177 ----VAK-LCLDVCINYVKSPKFSKLFTIVMWLLLLSICLGSL-TYVTAVLGVCLSSLGV 2230 VA+ C+ I + F+ ++ V++ +G L T+V ++ ++ + Sbjct 2191 KWSVVARGACIIATIFLLW---FNFIYANVIFSDFYLPKIGFLPTFVGKIVQWIKNTFSL 2247 Query 2231 PSYCDGVRELYINSSNVTTMDFCQGYFPCSVCLSGLDSLDSYPALETIQVTISSYK-LDL 2289 + CD LY +C G C CL+G D LD+Y A++ +Q +D Sbjct 2248 VTICD----LYSIQDVGFKNQYCNGSIACQFCLAGFDMLDNYKAIDVVQYEADRRAFVDY 2303 Query 2290 T-FLGLAAEWLLAYMLFTKFFYLLGLSAIMQAFFGYFASHFISNS--WLMWFIISIVQMA 2346 T L + E +++Y L+T +FY L +Q + + ++ W + ++S+ M Sbjct 2304 TGVLKIVIELIVSYALYTAWFYPLFALISIQILTTWLPELLMLSTLHWSVRLLVSLANML 2363 Query 2347 PVSAMVRMYIFFASFYYVWKSYVHIMDGCTSSTCMMCYKRNRATRVECTTIVNGVKRSFY 2406 P +R YI ASF ++ + H+ GC+ S C+ CYKRNR+ RV+C+TIV G+ R + Sbjct 2364 PAHVFMRFYIIIASFIKLFSLFRHVAYGCSKSGCLFCYKRNRSLRVKCSTIVGGMIRYYD 2423 Query 2407 VYANGGRGFCKAHNWNCLNCDTFCAGSTFISDEVARDLSLQFKRPINPTDQSAYVVDSVT 2466 V ANGG GFC H WNC++CD++ G+TFI+ E A DLS + KRPI PTD + + V V Sbjct 2424 VMANGGTGFCSKHQWNCIDCDSYKPGNTFITVEAALDLSKELKRPIQPTDVAYHTVTDVK 2483 Query 2467 VKNGALHLYFDKAGQKTYERHPLSHFVNLDNLRANNTKGSLPINVIVFDGKSKCEESAAK 2526 + L++D+ GQ+TY+ S FV+ NL + K ++V+V + + +++ Sbjct 2484 QVGCYMRLFYDRDGQRTYDDVNASLFVDYSNLLHSKVKSVPNMHVVVVENDA--DKANFL 2541 Query 2527 SASVYYSQLMCQPILLLDQALVSDVGDSTEVSVKMFDAYVDTFSATFSVPMEKLKALVAT 2586 +A+V+Y+Q + +PIL++D+ L++ T V+ MFD YVDTF + F V + L AL+AT Sbjct 2542 NAAVFYAQSLFRPILMVDKILITTANTGTSVTETMFDVYVDTFLSMFDVDKKSLNALIAT 2601 Query 2587 AHSELAKGVALDGVLSTFVSAARQGV-VDTDVDTKDVIECLKLSHHSDIEVTGDSCNNFM 2645 AHS + +G + VL TF+S AR+ +D+DVDTK + + + + + +E+T +SCNN + Sbjct 2602 AHSSIKQGTQICKVLDTFLSCARKSCSIDSDVDTKCLADSVMSAVSAGLELTDESCNNLV 2661 Query 2646 LTYNKVENMTPRDLGACIDCNARHINAQVAKSHNVSLVWNVKDYMSLSEQLRKQIRSAAK 2705 TY K +N+ DLG I +A+H+ VAK VS +W+V + LS + +++ A Sbjct 2662 PTYLKGDNIVAADLGVLIQNSAKHVQGNVAKIAGVSCIWSVDAFNQLSSDFQHKLKKACC 2721 Query 2706 KNNIPFRLTCATTRQVVNVITTKISLKGGKVVSTWFKLLLKVTLLCVLAALFCYVIMPVH 2765 K + LT V+V+TT SLKGG V S + + ++L+C + L+C +MP + Sbjct 2722 KTGLKLELTYNKQMANVSVLTTPFSLKGGAVFSYFVYVCFVLSLVCFIG-LWC--LMPTY 2778 Query 2766 SLSVHDGYTNEIIGYKAIQDGVTRDIVSTDDCFANKHAGFDSWFSQRGG--SYRNDKNCP 2823 ++ D YK + +GV RD+ D CFANK FD W+ G Y N CP Sbjct 2779 TVHKSDFQLPVYASYKVLDNGVIRDVSVEDVCFANKFEQFDQWYESTFGLSYYSNSMACP 2838 Query 2824 VVAAIITREIGFIVPGLPGTVLRALNGDFLHFLPRVFSAVGNICYTPSKLIEYSDFATSA 2883 +V A++ ++ G V +P VLR LHF+ SA G CYTP I YS+F S Sbjct 2839 IVVAVVDQDFGSTVFNVPTKVLR-YGYHVLHFITHALSADGVQCYTPHSQISYSNFYASG 2897 Query 2884 CVLAAECTIFKDAMGKPVPYCYDTNLLEGSISYSELRPDTRYVLMDG-SIIQFPNTYLEG 2942 CVL++ CT+F A G P PYCY L++ + YS L P RY L + I+ P EG Sbjct 2898 CVLSSACTMFAMADGSPQPYCYTDGLMQNASLYSSLVPHVRYNLANAKGFIRLPEVLREG 2957 Query 2943 SVRVVTTFDAEYCRHGTCERSEVGVCLSTSGRWVLNNEHYRALPGVFCGVDAMNLIANIF 3002 VR+V T YCR G CE ++ G+C + +G WVLNN++YR+LPG FCG D +LI +F Sbjct 2958 LVRIVRTRSMSYCRVGLCEEADEGICFNFNGSWVLNNDYYRSLPGTFCGRDVFDLIYQLF 3017 Query 3003 TPLVQPVGALDVSASVVAGGIIAILVTCAAYYFMKFRRAFGEYNHVVAANALLFLMSFTI 3062 L QPV L ++AS +AG I+A++V YY +K +RAFG+Y +V N +++ ++F + Sbjct 3018 KGLAQPVDFLALTASSIAGAILAVIVVLGFYYLIKLKRAFGDYTSIVFVNVIVWCVNFMM 3077 Query 3063 LCLAPAYSFLPGVYSIFYLYLTFYFTNDVSFLAHLQWFAMFSPIVPFWITAIYVFCISLK 3122 L + Y L VY+I Y Y T YF +++S + HLQW M+ I+P W +Y+ + Sbjct 3078 LFVFQVYPTLSCVYAICYFYATLYFPSEISVIMHLQWLVMYGTIMPLWFCLLYISVVVSN 3137 Query 3123 HFHWFFS--NYLKKRVMFNGVTFSTFEEAALCTFLLNKEMYLRLRSETLLPLTQYNRYLA 3180 H W FS L V +G TFEE AL TF++ K+ Y +L++ L +NRYL+ Sbjct 3138 HAFWVFSYCRQLGTSVRSDG----TFEEMALTTFMITKDSYCKLKNS--LSDVAFNRYLS 3191 Query 3181 LYNKYKYFSGALDTTSYREAACCHLAKALNDFSNS-GADVLYQPPQTSITSAVLQSGFRK 3239 LYNKY+Y+SG +DT +YREAAC LAKA++ F+N+ G+DVLYQPP S++++ LQSG K Sbjct 3192 LYNKYRYYSGKMDTAAYREAACSQLAKAMDTFTNNNGSDVLYQPPTASVSTSFLQSGIVK 3251 Query 3240 MAFPSGKVEGCMVQVTCGTTTLNGLWLDDTVYCPRHVVCTAEDMLNPNYDDLLIRKSNHS 3299 M P+ KVE C+V VT G TLNGLWLDD VYCPRHV+C+A DM NP+Y +LL R ++ Sbjct 3252 MVNPTSKVEPCIVSVTYGNMTLNGLWLDDKVYCPRHVICSASDMTNPDYTNLLCRVTSSD 3311 Query 3300 FLVQAGNVQLRVIGHSMQNCLLRLKVDTSNPKTPKYKFVRIQPGQTFSVLACYNGSPSGV 3359 F V + L V+ + MQ C+L L V N +TPKY F ++PG+TF+VLA YNG P G Sbjct 3312 FTVLFDRLSLTVMSYQMQGCMLVLTVTLQNSRTPKYTFGVVKPGETFTVLAAYNGKPQGA 3371 Query 3360 YQCAMRPNHTIKGSFLNGSCGSVGFNIDYDCVSFCYMHHMELPTGVHAGTDLEGKFYGPF 3419 + MR ++TIKGSFL GSCGSVG+ I DCV F YMH +EL TG H GTD G FYGP+ Sbjct 3372 FHVTMRSSYTIKGSFLCGSCGSVGYVIMGDCVKFVYMHQLELSTGCHTGTDFNGDFYGPY 3431 Query 3420 VDRQTAQAAGTDTTITLNVLAWLYAAVINGDRWFLNRFTTTLNDFNLVAMKYNYEPLTQD 3479 D Q Q D ++N +AWLYAA++N WF+ ++ DFN+ A+ + + D Sbjct 3432 KDAQVVQLPVQDYIQSVNFVAWLYAAILNNCNWFVQSDKCSVEDFNVWALSNGFSQVKSD 3491 Query 3480 HVDILGPLSAQTGIAVLDMCAALKELLQNGMNGRTILGSTILEDEFTPFDVVRQCSGVTF 3539 V + L++ TG+++ + AA+K L+NG GR I+GS EDE TP DV +Q +G+ Sbjct 3492 LV--IDALASMTGVSLETLLAAIKR-LKNGFQGRQIMGSCSFEDELTPSDVYQQLAGIKL 3548 Query 3540 QGKFKKIVKGTHHWMLLTFLTSLLILVQSTQWSLFFFVYENAFLPFALGIMAVAACAMLL 3599 Q K ++VKG W++ + I+ +W++F +V N L + V + AMLL Sbjct 3549 QSKRTRLVKGIVCWIMASTFLFSCIITAFVKWTMFMYVTTN-MLSITFCALCVISLAMLL 3607 Query 3600 VKHKHAFLCLFLLPSLATVAYFN-MVYMPASWVMRIMTWLELADTSLSGYRLKDCVMYAS 3658 VKHKH +L ++++P L T+ Y N +V ++ + WL S+ Y D V+Y Sbjct 3608 VKHKHLYLTMYIIPVLFTLLYNNYLVVYKQTFRGYVYAWLSYYVPSVE-YTYTDEVIYGM 3666 Query 3659 ALVL-LILMTARTVYDDAARRVWTLMNVITLVYKVYYGNSLDQAISMWALVISVTSNYSG 3717 L++ ++ +T R++ D + + VI++V Y G++L++ I + ++ S+ Y+ Sbjct 3667 LLLIGMVFVTLRSINHDLFSFIMFVGRVISVVSLWYMGSNLEEEILL--MLASLFGTYTW 3724 Query 3718 VVTTIMFLARAIV-FVCVEYYPLLFITGNTLQCIMLVYCFLGYCCCCYFGLFCLLNRYFR 3776 M A+ I +V V L F ++ +++ Y F+GY CY+GLF L+N FR Sbjct 3725 TTALSMAAAKVIAKWVAVNV--LYFTDIPQIKIVLVCYLFIGYIISCYWGLFSLMNSLFR 3782 Query 3777 LTLGVYDYLVSTQEFRYMNSQGLLPPKSSIDAFKLNIKLLGIGGKPCIKVATVQSKMSDV 3836 + LGVY+Y +S QE RYMN+ GL PPK+S +A LN KLLGIGG P I+V+ QSK++DV Sbjct 3783 MPLGVYNYKISVQELRYMNANGLRPPKNSFEALMLNFKLLGIGGVPIIEVSQFQSKLTDV 3842 Query 3837 KCTSVVLLSVLQQLRVESSSKLWAQCVQLHNDILLAKDTTEAFEKMVSLLSVLLSMQGAV 3896 KC + LL+ LQ L V S+SKLW C LHN+IL D AFEK+ LL VL + AV Sbjct 3843 KCANGGLLNCLQHLHVASNSKLWQYCSTLHNEILATSDLGVAFEKLAQLLIVLFANPAAV 3902 Query 3897 D------INKLCEEMLDNRATLQAIASEFSSLPSYAAYATAQEAYEQAVSNGDS-EVVLK 3949 D I ++C++ + LQA+ SEF ++ S+ Y A++ ++A S+G + + LK Sbjct 3903 DSKCLTSIEEVCDDYAKDNTVLQALQSEFVNMASFVEYEVAKKNLDEACSSGSANQQQLK 3962 Query 3950 KLKKSLNVAKSEFDHDAAMQRKLEKMADQAMTQMYKQARSEDKRAKVTSAMQTMLFTMLR 4009 +L+K+ N+AKS ++ D A+ RKLE+MAD A+T MYK+AR DK++KV SA+QTMLF+M+R Sbjct 3963 QLEKACNIAKSAYERDRAVARKLERMADLALTNMYKEARINDKKSKVVSALQTMLFSMVR 4022 Query 4010 KLDNDALNNIINNARDGCVPLNIIPLTTAAKLMVVVPDYGTYKNTCDGNTFTYASALWEI 4069 KLDN ALN+I++NA GCVPLN IP A L ++VPD Y D TYA +W+I Sbjct 4023 KLDNQALNSILDNAVKGCVPLNAIPSLAANTLTIIVPDKSVYDQVVDNVYVTYAGNVWQI 4082 Query 4070 QQVVDADSKIVQLSEINMDNSPNLAWPLIVTALRAN--SAVKLQNNELSPVALRQMSCAA 4127 Q + D+D QL EI S + WPL++ A R N SA LQNNEL P L+ + Sbjct 4083 QTIQDSDGTNKQLHEI----SDDCNWPLVIIANRHNEVSATVLQNNELMPAKLKTQVVNS 4138 Query 4128 GTTQTACTDDNALAYYNNAKGGRFVLALLSDHQDLKWARFPKSDGTGTIYTELEPPCRFV 4187 G QT T YYNN+ G+ V A+LSD LK+ + K DG + EL+PPC+F Sbjct 4139 GPDQTCNTPTQ--CYYNNSYNGKIVYAILSDVDGLKYTKILKDDGNFVV-LELDPPCKFT 4195 Query 4188 TDTPKGPKVKYLYFIKGLNNLNRGMVLGSLAATVRLQAGNATEVPANSTVLSFCAFAVDP 4247 KG K+KYLYF+KG N L RG V+G++++TVRLQAG ATE +NS++LS CAF+VDP Sbjct 4196 VQDVKGLKIKYLYFVKGCNTLARGWVVGTISSTVRLQAGTATEYASNSSILSLCAFSVDP 4255 Query 4248 AKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPEANMDQESFGGASCCLYCRCHIDH 4307 K Y D++ GG PI NCVKMLC H GTG AITV P+A Q+S+GGAS C+YCR ++H Sbjct 4256 KKTYLDFIQQGGTPIANCVKMLCDHAGTGMAITVKPDATTSQDSYGGASVCIYCRARVEH 4315 Query 4308 PNPKGFCDLKGKYVQIPTTCANDPVGFTLRNTVCTVCGMWKGYGCSCDQLREPMMQSADA 4367 P+ G C L+GK+VQ+P DPV + L + VC VCG W+ CSC + +QS D Sbjct 4316 PDVDGLCKLRGKFVQVPVG-IKDPVSYVLTHDVCQVCGFWRDGSCSCVS-TDTTVQSKD- 4372 Query 4368 STFLN 4372 + FLN Sbjct 4373 TNFLN 4377 Range 2: 1273 to 1427 Score:87.0 bits(214), Expect:5e-15, Method:Compositional matrix adjust., Identities:51/155(33%), Positives:79/155(50%), Gaps:2/155(1%) Query 1007 LTDNVAIKCIDIVKEAQSAKPTVIVNAANTHLKHGGGVAGALNKATNGAMQNESDEYIRQ 1066 +T NV DI+K ++ K V+VN AN H+ HGGGVA A+ A E+ + ++ Sbjct 1273 ITPNVCFVKGDIIKVSKRVKAEVVVNPANGHMAHGGGVAKAIAVAAGQQFVKETTDMVKS 1332 Query 1067 NGPLTVGGSCLLSGHNLAEKCLHVVGPN--LNAGEDVQLLKRAYENFNSQDVLLAPLLSA 1124 G G + +G L + L+VVGP+ + LL+R Y++ N D ++ L+SA Sbjct 1333 KGVCATGDCYVSTGGKLCKTVLNVVGPDARTQGKQSYALLERVYKHLNKYDCVVTTLISA 1392 Query 1125 GIFGAKPLQSLKMCVEIVRTQVYLAVNDKSLYDQI 1159 GIF SL + + QV L N++ +D I Sbjct 1393 GIFSVPSDVSLTYLLGTAKKQVVLVSNNQEDFDLI 1427 Range 3: 748 to 1016 Score:67.0 bits(162), Expect:5e-09, Method:Compositional matrix adjust., Identities:70/286(24%), Positives:125/286(43%), Gaps:28/286(9%) Query 714 RGLYRQCIRGKEQLQLLMP---LKAPKEVTFLEGDAHDTVLTSEEVVLKSGELEALETPI 770 RGL + L MP K ++ +L+G D L V + + L TP Sbjct 748 RGLLHSSQLPLDVYDLTMPSQVQKTKQKGIYLKGSGSDFSLADSVVEVVTTSL----TPC 803 Query 771 DSFTSGAVVGTPVCINGLMLLELENKEQYCALSPGLLAT-NNVFRLKGGAPVKG--VTFG 827 ++ V +CI + + + Y + G + + +R+ P G VTF Sbjct 804 -GYSEPPKVADKICIVDNVYMAKAGDKYYPVVVDGHVGLLDQAWRV----PCAGRCVTFK 858 Query 828 ED-TVLEVQGY-KNVKITFELDVRVDKVLNEKCSVYTVESGTEVTEFACVVAEAVVKTLQ 885 E TV E+ K +K+ +ELD + +LN C + V+ ++ EF VV +A+ + L Sbjct 859 EQPTVNEIASTPKTIKVFYELDKDFNTILNTACGEFEVDDTVDMEEFYAVVIDAIEEKLS 918 Query 886 PVSDLL---TPMGIDLDEWSVATFYLFDDAGEEKLSSRMYCSFYPPDEEEDCEECEDEEE 942 P +L + L + + +LFD+AGEE L+ ++YC+F P++++ EE Sbjct 919 PCKELEGVGAKVSAFLQKLEDNSLFLFDEAGEEVLAPKLYCAFTAPEDDDFLEE------ 972 Query 943 TCEHEYGTEDDYKGLPLEFGASTETPHVEEEEEEEDWLDDAIEAEP 988 + + + L ++ E E+EE + L+D ++ P Sbjct 973 --SGVEEDDVEGEETDLTVTSAGEPCVASEQEESSEILEDTLDDGP 1016 >RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Host translation inhibitor nsp1; Short=nsp1; AltName: Full=p28; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p65; Contains: RecName: Full=Papain-like proteinase nsp3; Short=PL-PRO; AltName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=p210; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; AltName: Full=Peptide HD2; AltName: Full=p44; Contains: RecName: Full=3C-like proteinase nsp5; Short=3CL-PRO; Short=3CLp; AltName: Full=M-PRO; AltName: Full=nsp5; AltName: Full=p27; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; AltName: Full=p10; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; AltName: Full=p22; Contains: RecName: Full=Viral protein genome-linked nsp9; AltName: Full=Non-structural protein 9; Short=nsp9; AltName: Full=RNA-capping enzyme subunit nsp9; AltName: Full=p12; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; AltName: Full=p15; Contains: RecName: Full=RNA-directed RNA polymerase nsp12; Short=Pol; Short=RdRp; AltName: Full=nsp12; AltName: Full=p100; Contains: RecName: Full=Helicase nsp13; Short=Hel; AltName: Full=nsp13; AltName: Full=p67; Contains: RecName: Full=Guanine-N7 methyltransferase nsp14; Short=ExoN; AltName: Full=nsp14; Contains: RecName: Full=Uridylate-specific endoribonuclease nsp15; AltName: Full=NendoU; AltName: Full=nsp15; AltName: Full=p35; Contains: RecName: Full=2'-O-methyltransferase nsp16; AltName: Full=nsp16 [Human coronavirus OC43] Sequence ID: P0C6X6.1 Length: 7095 Range 1: 1565 to 4377 Score:1866 bits(4834), Expect:0.0, Method:Compositional matrix adjust., Identities:1081/2889(37%), Positives:1607/2889(55%), Gaps:131/2889(4%) Query 1539 IKVFTTVDNTNLHTHIVDMSMTYGQQFGPTYLDGADVTKIKPHVNHEGKTFFVLPSDDTL 1598 + + TVD N V + ++G+ G + DG +VTK K +N++GK FF D L Sbjct 1565 VDILLTVDGVNFTNRFVPVGESFGKSLGNVFCDGVNVTKHKCDINYKGKVFFQF---DNL 1621 Query 1599 RSE---AFEYYHTIDESFLGRYMSALNHTKKWKFPQVGGLTSIKWADNNCYLSSVLLALQ 1655 SE A D+ L Y + L + KW+ G + K A+NNC+++ L LQ Sbjct 1622 SSEDLKAVRSSFNFDQKELLAYYNMLVNCFKWQVVVNGKYFTFKQANNNCFVNVSCLMLQ 1681 Query 1656 QVEVKFNAPALQEAYYRARAGDAANFCALILAYSNKTVGELGDVRETMTHLLQHANLESA 1715 + + F QEA+ R+G A F AL+LA G+ D R+ + + +L A Sbjct 1682 SLHLTFKIVQWQEAWLEFRSGRPARFVALVLAKGGFKFGDPADSRDFLRVVFSQVDLTGA 1741 Query 1716 KRVLNVVCKHCGQKTTTLKGVEAVMYMGTLSYDELKTGVSIPCVCGRNATQYLVQQESSF 1775 + CK CG K G++AVM+ GTLS ++L+ G ++ C CG+ + V+ + F Sbjct 1742 ICDFEIACK-CGVKQEQRTGLDAVMHFGTLSREDLEIGYTVDCSCGKKLI-HCVRFDVPF 1799 Query 1776 VMMSAPPAEYKLQQGAFLCANEYTGNYQCGHYTHITAKETLYRVDGAHLTKMSEYKGPVT 1835 ++ S PA KL +G AN + G+ GHY H+ +++ D +++ K+++ G ++ Sbjct 1800 LICSNTPASVKLPKGVG-SANIFIGD-NVGHYVHVKCEQSYQLYDASNVKKVTDVTGKLS 1857 Query 1836 DVFY-KETSYTTAIKPVSYKLDGVTYTEIEPKLDGYYKKGNAYYTEQPIDL-VPTQPMPN 1893 D Y K T +Y LD V E +P L YY G YYT++ I T + Sbjct 1858 DCLYLKNLKQTFKSVLTTYYLDDVKKIEYKPDLSQYYCDGGKYYTQRIIKAQFKTFEKVD 1917 Query 1894 ASFDNFKLTCSNTKFADDLNQMTGFKKPAS-RELTVTFFPDLNGDVVAIDYRHYSTSFKK 1952 + NFKL D LN GF E +T +P GDVV + Y +++ Sbjct 1918 GVYTNFKLIGHTV--CDSLNSKLGFDSSKEFVEYKITEWPTATGDVVLANDDLYVKRYER 1975 Query 1953 GAKLVHKPILW--HINQTTNKTTY--KPNIWCLRCLWSTKPVDTSNSFEVLVVEDTQGMD 2008 G KP++W H + N TY +P + VD + + V + D Sbjct 1976 GCITFGKPVIWLSHEKASLNSLTYFNRPLL-----------VDDNKFDVLKVDDVDDSGD 2024 Query 2009 NLACESQTTTSEEVVENPTVQKEIIECDVKTTEVVGNVILKPSEEGVKVTQELGHEDLMA 2068 + ++ T +++ V+K +V +VI+ K + L D+ Sbjct 2025 SSESGAKETKEINIIKLSGVKKPF--------KVEDSVIVNDDTSETKYVKSLSIVDVYD 2076 Query 2069 AYVEETSITIKKPNELSLALGLKTLA--THGAAAINSVPWSKI-LAYVKPFLGQTAVI-- 2123 ++ ++ N LS A+ + T+ + S+P + L +KP + + Sbjct 2077 MWLTGCKYVVRTANALSRAVNVPTIRKFIKFGMTLVSIPIDLLNLREIKPAVNVVKAVRN 2136 Query 2124 -TSNCIKKCVQRVFSNYMPYVITLLFQLCTFTKSTNSRIKASLPTTIAKNSVKSVAKLCL 2182 TS C N++ ++ LLF + K T IA + L Sbjct 2137 KTSACF---------NFIKWLFVLLFGWIKISADN----KVIYTTEIASKLTCKLVALAF 2183 Query 2183 DVCINYVKSPKFSKLFTIVMWLLLLSICLGSLTYVTAVLG-VCLSSLG-VPSYCDGVREL 2240 K ++ I+ + LL + Y + L +G +P++ + + Sbjct 2184 KNAFLTFKWSMVARGACIIATIFLLWF---NFIYANVIFSDFYLPKIGFLPTFVGKIAQW 2240 Query 2241 YINSSNVTTM-------------DFCQGYFPCSVCLSGLDSLDSYPALETIQVTISSYK- 2286 N+ ++ T+ +C G C CL+G D LD+Y A++ +Q Sbjct 2241 IKNTFSLVTICDLYSIQDVGFKNQYCNGSIACQFCLAGFDMLDNYKAIDVVQYEADRRAF 2300 Query 2287 LDLT-FLGLAAEWLLAYMLFTKFFYLLGLSAIMQAFFGYFASHFISNS--WLMWFIISIV 2343 +D T L + E +++Y L+T +FY L +Q + F+ ++ W ++++ Sbjct 2301 VDYTGVLKIVIELIVSYALYTAWFYPLFALISIQILTTWLPELFMLSTLHWSFRLLVALA 2360 Query 2344 QMAPVSAMVRMYIFFASFYYVWKSYVHIMDGCTSSTCMMCYKRNRATRVECTTIVNGVKR 2403 M P +R YI ASF ++ + H+ GC+ S C+ CYKRNR+ RV+C+TIV G+ R Sbjct 2361 NMLPAHVFMRFYIIIASFIKLFSLFKHVAYGCSKSGCLFCYKRNRSLRVKCSTIVGGMIR 2420 Query 2404 SFYVYANGGRGFCKAHNWNCLNCDTFCAGSTFISDEVARDLSLQFKRPINPTDQSAYVVD 2463 + V ANGG GFC H WNC++CD++ G+TFI+ E A DLS + KRPI PTD + + V Sbjct 2421 YYDVMANGGTGFCSKHQWNCIDCDSYKPGNTFITVEAALDLSKELKRPIQPTDVAYHTVT 2480 Query 2464 SVTVKNGALHLYFDKAGQKTYERHPLSHFVNLDNLRANNTKGSLPINVIVFDGKSKCEES 2523 V ++ L++D+ GQ+ Y+ S FV+ NL + K ++V+V + + +++ Sbjct 2481 DVKQVGCSMRLFYDRDGQRIYDDVNASLFVDYSNLLHSKVKSVPNMHVVVVENDA--DKA 2538 Query 2524 AAKSASVYYSQLMCQPILLLDQALVSDVGDSTEVSVKMFDAYVDTFSATFSVPMEKLKAL 2583 +A+V+Y+Q + +PIL++D+ L++ T V+ MFD YVDTF + F V + L AL Sbjct 2539 NFLNAAVFYAQSLFRPILMVDKNLITTANTGTSVTETMFDVYVDTFLSMFDVDKKSLNAL 2598 Query 2584 VATAHSELAKGVALDGVLSTFVSAARQGV-VDTDVDTKDVIECLKLSHHSDIEVTGDSCN 2642 +ATAHS + +G + VL TF+S AR+ +D+DVDTK + + + + + +E+T +SCN Sbjct 2599 IATAHSSIKQGTQIYKVLDTFLSCARKSCSIDSDVDTKCLADSVMSAVSAGLELTDESCN 2658 Query 2643 NFMLTYNKVENMTPRDLGACIDCNARHINAQVAKSHNVSLVWNVKDYMSLSEQLRKQIRS 2702 N + TY K +N+ DLG I +A+H+ VAK VS +W+V + S + +++ Sbjct 2659 NLVPTYLKSDNIVAADLGVLIQNSAKHVQGNVAKIAGVSCIWSVDAFNQFSSDFQHKLKK 2718 Query 2703 AAKKNNIPFRLTCATTRQVVNVITTKISLKGGKVVSTWFKLLLKVTLLCVLAALFCYVIM 2762 A K + +LT V+V+TT SLKGG V S + + ++L+C + L+C +M Sbjct 2719 ACCKTGLKLKLTYNKQMANVSVLTTPFSLKGGAVFSYFVYVCFVLSLVCFIG-LWC--LM 2775 Query 2763 PVHSLSVHDGYTNEIIGYKAIQDGVTRDIVSTDDCFANKHAGFDSWFSQRGG--SYRNDK 2820 P +++ D YK + +GV RD+ D CFANK FD W+ G Y N Sbjct 2776 PTYTVHKSDFQLPVYASYKVLDNGVIRDVSVEDVCFANKFEQFDQWYESTFGLSYYSNSM 2835 Query 2821 NCPVVAAIITREIGFIVPGLPGTVLRALNGDFLHFLPRVFSAVGNICYTPSKLIEYSDFA 2880 CP+V A+I ++ G V +P VLR LHF+ SA G CYTP I YS+F Sbjct 2836 ACPIVVAVIDQDFGSTVFNVPTKVLR-YGYHVLHFITHALSADGVQCYTPHSQISYSNFY 2894 Query 2881 TSACVLAAECTIFKDAMGKPVPYCYDTNLLEGSISYSELRPDTRYVLMDGS-IIQFPNTY 2939 S CVL++ CT+F A G P PYCY L++ + YS L P RY L + I+FP Sbjct 2895 ASGCVLSSACTMFTMADGSPQPYCYTDGLMQNASLYSSLVPHVRYNLANAKGFIRFPEVL 2954 Query 2940 LEGSVRVVTTFDAEYCRHGTCERSEVGVCLSTSGRWVLNNEHYRALPGVFCGVDAMNLIA 2999 EG VRVV T YCR G CE ++ G+C + +G WVLNN++YR+LPG FCG D +LI Sbjct 2955 REGLVRVVRTRSMSYCRVGLCEEADEGICFNFNGSWVLNNDYYRSLPGTFCGRDVFDLIY 3014 Query 3000 NIFTPLVQPVGALDVSASVVAGGIIAILVTCAAYYFMKFRRAFGEYNHVVAANALLFLMS 3059 +F L QPV L ++AS +AG I+A++V YY +K +RAFG+Y VV N +++ ++ Sbjct 3015 QLFKGLAQPVDFLALTASSIAGAILAVIVVLVFYYLIKLKRAFGDYTSVVFVNVIVWCVN 3074 Query 3060 FTILCLAPAYSFLPGVYSIFYLYLTFYFTNDVSFLAHLQWFAMFSPIVPFWITAIYVFCI 3119 F +L + Y L VY+I Y Y T YF +++S + HLQW M+ I+P W +Y+ + Sbjct 3075 FMMLFVFQVYPTLSCVYAICYFYATLYFPSEISVIMHLQWLVMYGTIMPLWFCLLYIAVV 3134 Query 3120 SLKHFHWFFSNYLKK---RVMFNGVTFSTFEEAALCTFLLNKEMYLRLRSETLLPLTQYN 3176 H W FS Y +K V +G TFEE AL TF++ K+ Y +L++ L +N Sbjct 3135 VSNHAFWVFS-YCRKLGTSVRSDG----TFEEMALTTFMITKDSYCKLKNS--LSDVAFN 3187 Query 3177 RYLALYNKYKYFSGALDTTSYREAACCHLAKALNDFSNS-GADVLYQPPQTSITSAVLQS 3235 RYL+LYNKY+Y+SG +DT +YREAAC LAKA++ F+N+ G+DVLYQPP S++++ LQS Sbjct 3188 RYLSLYNKYRYYSGKMDTAAYREAACSQLAKAMDTFTNNNGSDVLYQPPTASVSTSFLQS 3247 Query 3236 GFRKMAFPSGKVEGCMVQVTCGTTTLNGLWLDDTVYCPRHVVCTAEDMLNPNYDDLLIRK 3295 G KM P+ KVE C+V VT G TLNGLWLDD VYCPRHV+C+A DM NP+Y +LL R Sbjct 3248 GIVKMVNPTSKVEPCVVSVTYGNMTLNGLWLDDKVYCPRHVICSASDMTNPDYTNLLCRV 3307 Query 3296 SNHSFLVQAGNVQLRVIGHSMQNCLLRLKVDTSNPKTPKYKFVRIQPGQTFSVLACYNGS 3355 ++ F V + L V+ + M+ C+L L V N +TPKY F ++PG+TF+VLA YNG Sbjct 3308 TSSDFTVLFDRLSLTVMSYQMRGCMLVLTVTLQNSRTPKYTFGVVKPGETFTVLAAYNGK 3367 Query 3356 PSGVYQCAMRPNHTIKGSFLNGSCGSVGFNIDYDCVSFCYMHHMELPTGVHAGTDLEGKF 3415 P G + MR ++TIKGSFL GSCGSVG+ I DCV F YMH +EL TG H GTD G F Sbjct 3368 PQGAFHVTMRSSYTIKGSFLCGSCGSVGYVIMGDCVKFVYMHQLELSTGCHTGTDFNGDF 3427 Query 3416 YGPFVDRQTAQAAGTDTTITLNVLAWLYAAVINGDRWFLNRFTTTLNDFNLVAMKYNYEP 3475 YGP+ D Q Q D ++N LAWLYAA++N WF+ ++ DFN+ A+ + Sbjct 3428 YGPYKDAQVVQLPIQDYIQSVNFLAWLYAAILNNCNWFIQSDKCSVEDFNVWALSNGFSQ 3487 Query 3476 LTQDHVDILGPLSAQTGIAVLDMCAALKELLQNGMNGRTILGSTILEDEFTPFDVVRQCS 3535 + D V + L++ TG+++ + AA+K L+NG GR I+GS EDE TP DV +Q + Sbjct 3488 VKSDLV--IDALASMTGVSLETLLAAIKR-LKNGFQGRQIMGSCSFEDELTPSDVYQQLA 3544 Query 3536 GVTFQGKFKKIVKGTHHWMLLTFLTSLLILVQSTQWSLFFFVYENAFLPFALGIMAVAAC 3595 G+ Q K ++ KGT W++ + I+ +W++F +V N F + V + Sbjct 3545 GIKLQSKRTRLFKGTVCWIMASTFLFSCIITAFVKWTMFMYVTTNMF-SITFCALCVISL 3603 Query 3596 AMLLVKHKHAFLCLFLLPSLATVAYFN-MVYMPASWVMRIMTWLELADTSLSGYRLKDCV 3654 AMLLVKHKH +L +++ P L T+ Y N +V ++ + WL S+ Y D V Sbjct 3604 AMLLVKHKHLYLTMYITPVLFTLLYNNYLVVYKHTFRGYVYAWLSYYVPSVE-YTYTDEV 3662 Query 3655 MYASALVL-LILMTARTVYDDAARRVWTLMNVITLVYKVYYGNSLDQAISMWALVISVTS 3713 +Y L++ ++ +T R++ D + + +I++ Y G++L++ I + ++ S+ Sbjct 3663 IYGMLLLVGMVFVTLRSINHDLFSFIMFVGRLISVFSLWYKGSNLEEEILL--MLASLFG 3720 Query 3714 NYSGVVTTIMFLARAIV-FVCVEYYPLLFITGNTLQCIMLVYCFLGYCCCCYFGLFCLLN 3772 Y+ M +A+ I +V V L F ++ ++L Y F+GY CY+GLF L+N Sbjct 3721 TYTWTTVLSMAVAKVIAKWVAVNV--LYFTDIPQIKIVLLCYLFIGYIISCYWGLFSLMN 3778 Query 3773 RYFRLTLGVYDYLVSTQEFRYMNSQGLLPPKSSIDAFKLNIKLLGIGGKPCIKVATVQSK 3832 FR+ LGVY+Y +S QE RYMN+ GL PPK+S +A LN KLLGIGG P I+V+ QSK Sbjct 3779 SLFRMPLGVYNYKISVQELRYMNANGLRPPKNSFEALMLNFKLLGIGGVPIIEVSQFQSK 3838 Query 3833 MSDVKCTSVVLLSVLQQLRVESSSKLWAQCVQLHNDILLAKDTTEAFEKMVSLLSVLLSM 3892 ++DVKC +VVLL+ LQ L V S+SKLW C LHN+IL D + AFEK+ LL VL + Sbjct 3839 LTDVKCANVVLLNCLQHLHVASNSKLWHYCSTLHNEILATSDLSVAFEKLAQLLIVLFAN 3898 Query 3893 QGAVD------INKLCEEMLDNRATLQAIASEFSSLPSYAAYATAQEAYEQAVSNGDS-E 3945 AVD I ++C++ + LQA+ SEF ++ S+ Y A++ ++A +G + + Sbjct 3899 PAAVDSKCLTSIEEVCDDYAKDNTVLQALQSEFVNMASFVEYEVAKKNLDEARFSGSANQ 3958 Query 3946 VVLKKLKKSLNVAKSEFDHDAAMQRKLEKMADQAMTQMYKQARSEDKRAKVTSAMQTMLF 4005 LK+L+K+ N+AKS ++ D A+ +KLE+MAD A+T MYK+AR DK++KV SA+QTMLF Sbjct 3959 QQLKQLEKACNIAKSAYERDRAVAKKLERMADLALTNMYKEARINDKKSKVVSALQTMLF 4018 Query 4006 TMLRKLDNDALNNIINNARDGCVPLNIIPLTTAAKLMVVVPDYGTYKNTCDGNTFTYASA 4065 +M+RKLDN ALN+I++NA GCVPLN IP A L ++VPD Y D TYA Sbjct 4019 SMVRKLDNQALNSILDNAVKGCVPLNAIPSLAANTLNIIVPDKSVYDQIVDNIYVTYAGN 4078 Query 4066 LWEIQQVVDADSKIVQLSEINMDNSPNLAWPLIVTALRAN--SAVKLQNNELSPVALRQM 4123 +W+IQ + D+D QL+EI S + WPL++ A R N SA LQNNEL P L+ Sbjct 4079 VWQIQTIQDSDGTNKQLNEI----SDDCNWPLVIIANRYNEVSATVLQNNELMPAKLKIQ 4134 Query 4124 SCAAGTTQTACTDDNALAYYNNAKGGRFVLALLSDHQDLKWARFPKSDGTGTIYTELEPP 4183 +G QT T YYNN+ G+ V A+LSD LK+ + K DG + EL+PP Sbjct 4135 VVNSGPDQTCNTPTQ--CYYNNSNNGKIVYAILSDVDGLKYTKILKDDGNFVV-LELDPP 4191 Query 4184 CRFVTDTPKGPKVKYLYFIKGLNNLNRGMVLGSLAATVRLQAGNATEVPANSTVLSFCAF 4243 C+F KG K+KYLYF+KG N L RG V+G++++TVRLQAG ATE +NS++LS CAF Sbjct 4192 CKFTVQDAKGLKIKYLYFVKGCNTLARGWVVGTISSTVRLQAGTATEYASNSSILSLCAF 4251 Query 4244 AVDPAKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPEANMDQESFGGASCCLYCRC 4303 +VDP K Y D++ GG PI NCVKMLC H GTG AITV P+A Q+S+GGAS C+YCR Sbjct 4252 SVDPKKTYLDFIQQGGTPIANCVKMLCDHAGTGMAITVKPDATTSQDSYGGASVCIYCRA 4311 Query 4304 HIDHPNPKGFCDLKGKYVQIPTTCANDPVGFTLRNTVCTVCGMWKGYGCSCDQLREPMMQ 4363 ++HP+ G C L+GK+VQ+P DPV + L + VC VCG W+ CSC + +Q Sbjct 4312 RVEHPDVDGLCKLRGKFVQVPVG-IKDPVSYVLTHDVCRVCGFWRDGSCSCVS-TDTTVQ 4369 Query 4364 SADASTFLN 4372 S D + FLN Sbjct 4370 SKD-TNFLN 4377 Range 2: 1273 to 1427 Score:86.7 bits(213), Expect:5e-15, Method:Compositional matrix adjust., Identities:52/155(34%), Positives:80/155(51%), Gaps:2/155(1%) Query 1007 LTDNVAIKCIDIVKEAQSAKPTVIVNAANTHLKHGGGVAGALNKATNGAMQNESDEYIRQ 1066 +T NV DI+K ++ K V+VN AN H+ HGGGVA A+ A E+ ++ Sbjct 1273 ITPNVCFVKGDIIKVSKLVKAEVVVNPANGHMVHGGGVAKAIAVAAGQQFVKETTNMVKS 1332 Query 1067 NGPLTVGGSCLLSGHNLAEKCLHVVGPN--LNAGEDVQLLKRAYENFNSQDVLLAPLLSA 1124 G G + +G L + L+VVGP+ + LL+R Y++FN+ D ++ L+SA Sbjct 1333 KGVCATGDCYVSTGGKLCKTVLNVVGPDARTQGKQSYVLLERVYKHFNNYDCVVTTLISA 1392 Query 1125 GIFGAKPLQSLKMCVEIVRTQVYLAVNDKSLYDQI 1159 GIF SL + + QV L N++ +D I Sbjct 1393 GIFSVPSDVSLTYLLGTAKKQVVLVSNNQEDFDLI 1427 Range 3: 748 to 1036 Score:68.9 bits(167), Expect:1e-09, Method:Compositional matrix adjust., Identities:76/304(25%), Positives:129/304(42%), Gaps:51/304(16%) Query 714 RGLYRQCIRGKEQLQLLMP---LKAPKEVTFLEGDAHDTVLTSEEVVLKSGELEALETPI 770 RGL + L MP KA ++ +L+G D L V + + L TP Sbjct 748 RGLLHSSQLPLDVYDLTMPSQVQKAKQKPIYLKGSGSDFSLADSVVEVVTTSL----TPC 803 Query 771 DSFTSGAVVGTPVCI-NGLMLLELENKEQYCALSPGLLATNNVFRLKGGAPVKGVTFGED 829 ++ V +CI + + + + +K + + + +R+ + VTF E Sbjct 804 -GYSEPPKVADKICIVDNVYMAKAGDKYYPVVVDDHVGLLDQAWRVPCAG--RRVTFKEQ 860 Query 830 -TVLEVQGY-KNVKITFELDVRVDKVLNEKCSVYTVESGTEVTEFACVVAEAVVKTLQPV 887 TV E+ K +K+ +ELD + +LN C V+ V+ ++ EF VV +A+ + L P Sbjct 861 PTVKEIISMPKIIKVFYELDNDFNTILNTACGVFEVDDTVDMEEFYAVVIDAIEEKLSPC 920 Query 888 SDLL---TPMGIDLDEWSVATFYLFDDAGEEKLSSRMYCSFYPPDEEEDCEE-------- 936 +L + L + +LFD+AGEE + ++YC+F P++++ EE Sbjct 921 KELEGVGAKVSAFLQKLEDNPLFLFDEAGEEVFAPKLYCAFTAPEDDDFLEESDVEEDDV 980 Query 937 -----------------CEDEEETCEHEYGTEDDYKGLPLEFGASTET--PHVEEEEEEE 977 ++EE+ E T DD G S ET VEE+ E Sbjct 981 EGEETDLTITSAGQPCVASEQEESSEVLEDTLDD--------GPSVETSDSQVEEDVEMS 1032 Query 978 DWLD 981 D++D Sbjct 1033 DFVD 1036 >RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Host translation inhibitor nsp1; Short=nsp1; AltName: Full=p28; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p65; Contains: RecName: Full=Papain-like proteinase nsp3; Short=PL-PRO; AltName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=p210; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; AltName: Full=Peptide HD2; AltName: Full=p44; Contains: RecName: Full=3C-like proteinase nsp5; Short=3CL-PRO; Short=3CLp; AltName: Full=M-PRO; AltName: Full=nsp5; AltName: Full=p27; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; AltName: Full=p10; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; AltName: Full=p22; Contains: RecName: Full=Viral protein genome-linked nsp9; AltName: Full=Non-structural protein 9; Short=nsp9; AltName: Full=RNA-capping enzyme subunit nsp9; AltName: Full=p12; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; AltName: Full=p15; Contains: RecName: Full=RNA-directed RNA polymerase nsp12; Short=Pol; Short=RdRp; AltName: Full=nsp12; AltName: Full=p100; Contains: RecName: Full=Helicase nsp13; Short=Hel; AltName: Full=nsp13; AltName: Full=p67; Contains: RecName: Full=Guanine-N7 methyltransferase nsp14; Short=ExoN; AltName: Full=nsp14; Contains: RecName: Full=Uridylate-specific endoribonuclease nsp15; AltName: Full=NendoU; AltName: Full=nsp15; AltName: Full=p35; Contains: RecName: Full=2'-O-methyltransferase nsp16; AltName: Full=nsp16 [Bovine coronavirus Mebus] Sequence ID: P0C6W9.1 Length: 7094 Range 1: 1565 to 4377 Score:1864 bits(4828), Expect:0.0, Method:Compositional matrix adjust., Identities:1082/2885(38%), Positives:1607/2885(55%), Gaps:123/2885(4%) Query 1539 IKVFTTVDNTNLHTHIVDMSMTYGQQFGPTYLDGADVTKIKPHVNHEGKTFFVLPSDDTL 1598 + + TVD N V + ++G+ G + DG +VTK K +N++GK FF D L Sbjct 1565 VDILLTVDGVNFTNRFVPVGESFGKSLGNVFCDGVNVTKHKCDINYKGKVFFQF---DNL 1621 Query 1599 RSE---AFEYYHTIDESFLGRYMSALNHTKKWKFPQVGGLTSIKWADNNCYLSSVLLALQ 1655 SE A D+ L Y + L + KW+ G + K A+NNC+++ L LQ Sbjct 1622 SSEDLKAVRSSFNFDQKELLAYYNMLVNCSKWQVVFNGKYFTFKQANNNCFVNVSCLMLQ 1681 Query 1656 QVEVKFNAPALQEAYYRARAGDAANFCALILAYSNKTVGELGDVRETMTHLLQHANLESA 1715 + +KF QEA+ R+G A F +L+LA G+ D R+ + + +L A Sbjct 1682 SLNLKFKIVQWQEAWLEFRSGRPARFVSLVLAKGGFKFGDPADSRDFLRVVFSQVDLTGA 1741 Query 1716 KRVLNVVCKHCGQKTTTLKGVEAVMYMGTLSYDELKTGVSIPCVCGRNATQYLVQQESSF 1775 + CK CG K GV+AVM+ GTLS ++L+ G ++ C CG+ + V+ + F Sbjct 1742 ICDFEIACK-CGVKQEQRTGVDAVMHFGTLSREDLEIGYTVDCSCGKKLI-HCVRFDVPF 1799 Query 1776 VMMSAPPAEYKLQQGAFLCANEYTGNYQCGHYTHITAKETLYRVDGAHLTKMSEYKGPVT 1835 ++ S PA KL +G AN + G+ + GHY H+ +++ D +++ K+++ G ++ Sbjct 1800 LICSNTPASVKLPKGVG-SANIFKGD-KVGHYVHVKCEQSYQLYDASNVKKVTDVTGNLS 1857 Query 1836 DVFY-KETSYTTAIKPVSYKLDGVTYTEIEPKLDGYYKKGNAYYTEQPIDL-VPTQPMPN 1893 D Y K T +Y LD V E +P L YY G YYT++ I T + Sbjct 1858 DCLYLKNLKQTFKSVLTTYYLDDVKKIEYKPDLSQYYCDGGKYYTQRIIKAQFKTFEKVD 1917 Query 1894 ASFDNFKLTCSNTKFADDLNQMTGFKKPAS-RELTVTFFPDLNGDVVAIDYRHYSTSFKK 1952 + NFKL D LN GF E VT +P GDVV Y +++ Sbjct 1918 GVYTNFKLI--GHTVCDILNAKLGFDSSKEFVEYKVTEWPTATGDVVLATDDLYVKRYER 1975 Query 1953 GAKLVHKPILW--HINQTTNKTTYKPNIWCLRCLWSTKPVDTSNSFEVLVVEDTQGMDNL 2010 G KP++W H + N TY ++ + N F+VL V+D ++ Sbjct 1976 GCITFGKPVIWLSHEQASLNSLTY----------FNRPLLVDENKFDVLKVDDVDDGGDI 2025 Query 2011 ACESQTTTSEEV--VENPTVQKEIIECDVKTTEVVGNVILKPSEEGVKVTQELGHEDLMA 2068 + ES +E+ ++ V+K +V +VI+ +K + L D+ Sbjct 2026 S-ESDAKEPKEINIIKLSGVKKPF--------KVEDSVIVNDDTSEIKYVKSLSIVDVYD 2076 Query 2069 AYVEETSITIKKPNELSLALGLKTLA--THGAAAINSVPWSKI-LAYVKPFLGQTAVITS 2125 ++ ++ N LS A+ + T+ + S+P + L +KP + Sbjct 2077 MWLTGCRCVVRTANALSRAVNVPTIRKFIKFGMTLVSIPIDLLNLREIKPVFNVVKAV-R 2135 Query 2126 NCIKKCVQRVFSNYMPYVITLLFQLCTFTKSTNSRIKASLPTTIAKNSVKSVAKLCLDVC 2185 N I C N++ ++ LLF + K T +A + L Sbjct 2136 NKISACF-----NFIKWLFVLLFGWIKISADN----KVIYTTEVASKLTCKLVALAFKNA 2186 Query 2186 INYVKSPKFSKLFTIVMWLLLLSICLGSLTYVTAVLG-VCLSSLG-VPSYCDGVRELYIN 2243 K ++ I+ + LL + Y + L +G +P++ + + N Sbjct 2187 FLTFKWSVVARGACIIATIFLLWF---NFIYANVIFSDFYLPKIGFLPTFVGKIAQWIKN 2243 Query 2244 SSNVTTM-------------DFCQGYFPCSVCLSGLDSLDSYPALETIQVTISSYK-LDL 2289 + ++ T+ +C G C CL+G D LD+Y A++ +Q +D Sbjct 2244 TFSLVTICDLYSIQDVGFKNQYCNGSIACQFCLAGFDMLDNYKAIDVVQYEADRRAFVDY 2303 Query 2290 T-FLGLAAEWLLAYMLFTKFFYLLGLSAIMQAFFGYFASHFISNS--WLMWFIISIVQMA 2346 T L + E +++Y L+T +FY L +Q + F+ ++ W + ++S+ M Sbjct 2304 TGVLKIVIELIVSYALYTAWFYPLFALISIQILTTWLPELFMLSTLHWSVRLLVSLANML 2363 Query 2347 PVSAMVRMYIFFASFYYVWKSYVHIMDGCTSSTCMMCYKRNRATRVECTTIVNGVKRSFY 2406 P +R YI ASF ++ + H+ GC+ S C+ CYKRNR+ RV+C+TIV G+ R + Sbjct 2364 PAHVFMRFYIIIASFIKLFSLFRHVAYGCSKSGCLFCYKRNRSLRVKCSTIVGGMIRYYD 2423 Query 2407 VYANGGRGFCKAHNWNCLNCDTFCAGSTFISDEVARDLSLQFKRPINPTDQSAYVVDSVT 2466 ANGG GFC H WNC++CD++ G+TFI+ E A DLS + KRPI PTD + + V V Sbjct 2424 AMANGGTGFCSKHQWNCIDCDSYKPGNTFITVEAALDLSKELKRPIQPTDVAYHTVTDVK 2483 Query 2467 VKNGALHLYFDKAGQKTYERHPLSHFVNLDNLRANNTKGSLPINVIVFDGKSKCEESAAK 2526 + L++D+ GQ+TY+ S FV+ NL + K ++V+V + + +++ Sbjct 2484 QVGCYMRLFYDRDGQRTYDDVNASLFVDYSNLLHSKVKSVPNMHVVVVENDA--DKANFL 2541 Query 2527 SASVYYSQLMCQPILLLDQALVSDVGDSTEVSVKMFDAYVDTFSATFSVPMEKLKALVAT 2586 +A+V+Y+Q + +PIL++D+ L++ T V+ MFD YVDTF + F V + L AL+AT Sbjct 2542 NAAVFYAQSLFRPILMVDKNLITTANTGTSVTETMFDVYVDTFLSMFDVDKKSLNALIAT 2601 Query 2587 AHSELAKGVALDGVLSTFVSAARQGV-VDTDVDTKDVIECLKLSHHSDIEVTGDSCNNFM 2645 AHS + +G + VL TF+S AR+ +D+DVDTK + + + + + +E+T +SCNN + Sbjct 2602 AHSSIKQGTQICKVLDTFLSCARKSCSIDSDVDTKCLADSVMSAVSAGLELTDESCNNLV 2661 Query 2646 LTYNKVENMTPRDLGACIDCNARHINAQVAKSHNVSLVWNVKDYMSLSEQLRKQIRSAAK 2705 TY K +N+ DLG I +A+H+ VAK VS +W+V + LS + +++ A Sbjct 2662 PTYLKGDNIVAADLGVLIQNSAKHVQGNVAKIAGVSCIWSVDAFNQLSSDFQHKLKKACC 2721 Query 2706 KNNIPFRLTCATTRQVVNVITTKISLKGGKVVSTWFKLLLKVTLLCVLAALFCYVIMPVH 2765 K + +LT V+V+TT SLKGG V S + + ++L+C + L+C +MP + Sbjct 2722 KTGLKLKLTYNKQMANVSVLTTPFSLKGGAVFSYFVYVCFVLSLVCFIG-LWC--LMPTY 2778 Query 2766 SLSVHDGYTNEIIGYKAIQDGVTRDIVSTDDCFANKHAGFDSWFSQRGG--SYRNDKNCP 2823 ++ D YK + +GV RD+ D CFANK FD W+ G Y N CP Sbjct 2779 TVHKSDFQLPVYASYKVLDNGVIRDVSVEDVCFANKFEQFDQWYESTFGLSYYSNSMACP 2838 Query 2824 VVAAIITREIGFIVPGLPGTVLRALNGDFLHFLPRVFSAVGNICYTPSKLIEYSDFATSA 2883 +V A++ ++ G V +P VLR LHF+ SA G CYTP I YS+F S Sbjct 2839 IVVAVVDQDFGSTVFNVPTKVLR-YGYHVLHFITHALSADGVQCYTPHSQISYSNFYASG 2897 Query 2884 CVLAAECTIFKDAMGKPVPYCYDTNLLEGSISYSELRPDTRYVLMDGS-IIQFPNTYLEG 2942 CVL++ CT+F A G P PYCY L++ + YS L P RY L + I+FP EG Sbjct 2898 CVLSSACTMFAMADGSPQPYCYTDGLMQNASLYSSLVPHVRYNLANAKGFIRFPEVLREG 2957 Query 2943 SVRVVTTFDAEYCRHGTCERSEVGVCLSTSGRWVLNNEHYRALPGVFCGVDAMNLIANIF 3002 VR+V T YCR G CE ++ G+C + +G WVLNN++YR+LPG FCG D +LI +F Sbjct 2958 LVRIVRTRSMPYCRVGLCEEADEGICFNFNGSWVLNNDYYRSLPGTFCGRDVFDLIYQLF 3017 Query 3003 TPLVQPVGALDVSASVVAGGIIAILVTCAAYYFMKFRRAFGEYNHVVAANALLFLMSFTI 3062 L QPV L ++AS +AG I+A++V YY +K +RAFG+Y +V N +++ ++F + Sbjct 3018 KGLAQPVDFLALTASSIAGAILAVIVVLVFYYLIKLKRAFGDYTSIVFVNVIVWCVNFMM 3077 Query 3063 LCLAPAYSFLPGVYSIFYLYLTFYFTNDVSFLAHLQWFAMFSPIVPFWITAIYVFCISLK 3122 L + Y L VY+I Y Y T YF +++S + HLQW M+ I+P W +Y+ + Sbjct 3078 LFVFQVYPTLSCVYAICYFYATLYFPSEISVIMHLQWLVMYGTIMPLWFCLLYISVVVSN 3137 Query 3123 HFHWFFS--NYLKKRVMFNGVTFSTFEEAALCTFLLNKEMYLRLRSETLLPLTQYNRYLA 3180 H W FS L V +G TFEE AL TF++ K+ Y +L++ L +NRYL+ Sbjct 3138 HAFWVFSYCRQLGTSVRSDG----TFEEMALTTFMITKDSYCKLKNS--LSDVAFNRYLS 3191 Query 3181 LYNKYKYFSGALDTTSYREAACCHLAKALNDFSNS-GADVLYQPPQTSITSAVLQSGFRK 3239 LYNKY+Y+SG +DT +YREAAC LAKA++ F+N+ G+DVLYQPP S++++ LQSG K Sbjct 3192 LYNKYRYYSGKMDTAAYREAACSQLAKAMDTFTNNNGSDVLYQPPTASVSTSFLQSGIVK 3251 Query 3240 MAFPSGKVEGCMVQVTCGTTTLNGLWLDDTVYCPRHVVCTAEDMLNPNYDDLLIRKSNHS 3299 M P+ KVE C+V VT G TLNGLWL D VYCPRHV+C+A DM NP+Y +LL R ++ Sbjct 3252 MVNPTSKVEPCIVSVTYGNMTLNGLWLGDKVYCPRHVICSASDMTNPDYTNLLCRVTSSD 3311 Query 3300 FLVQAGNVQLRVIGHSMQNCLLRLKVDTSNPKTPKYKFVRIQPGQTFSVLACYNGSPSGV 3359 F V + L V+ + MQ C+L L V N +TPKY F ++PG+TF+VLA YNG P G Sbjct 3312 FTVLFDRLSLTVMSYQMQGCMLVLTVTLQNSRTPKYTFGVVKPGETFTVLAAYNGKPQGA 3371 Query 3360 YQCAMRPNHTIKGSFLNGSCGSVGFNIDYDCVSFCYMHHMELPTGVHAGTDLEGKFYGPF 3419 + MR ++TIKGSFL GSCGSV + I DCV F YMH +EL TG H GTD G FYGP+ Sbjct 3372 FHVTMRSSYTIKGSFLCGSCGSVVYVIMGDCVKFVYMHQLELSTGCHTGTDFNGDFYGPY 3431 Query 3420 VDRQTAQAAGTDTTITLNVLAWLYAAVINGDRWFLNRFTTTLNDFNLVAMKYNYEPLTQD 3479 D Q Q D ++N +AWLYAA++N WF+ ++ DFN+ A+ + + D Sbjct 3432 KDAQVVQLPVQDYIQSVNFVAWLYAAILNNCNWFVQSDKCSVEDFNVWALSNGFSQVKSD 3491 Query 3480 HVDILGPLSAQTGIAVLDMCAALKELLQNGMNGRTILGSTILEDEFTPFDVVRQCSGVTF 3539 V + L++ TG+++ + AA+K L+NG GR I+GS EDE TP DV +Q +G+ Sbjct 3492 LV--IDALASMTGVSLETLLAAIKH-LKNGFQGRQIMGSCSFEDELTPSDVYQQLAGIKL 3548 Query 3540 QGKFKKIVKGTHHWMLLTFLTSLLILVQSTQWSLFFFVYENAFLPFALGIMAVAACAMLL 3599 Q K ++VKG W++ + I+ +W++F +V N L + V + MLL Sbjct 3549 QSKRTRLVKGIVCWIMASTFLFSCIITAFVKWTMFMYVTTN-MLSITFCALCVISLTMLL 3607 Query 3600 VKHKHAFLCLFLLPSLATVAYFN-MVYMPASWVMRIMTWLELADTSLSGYRLKDCVMYAS 3658 VKHKH +L ++++P L T+ Y N +V ++ + WL S+ Y D V+Y Sbjct 3608 VKHKHLYLTMYIIPVLFTLLYNNYLVVYKQTFRGYVYAWLSYYVPSVE-YTYTDEVIYGM 3666 Query 3659 ALVL-LILMTARTVYDDAARRVWTLMNVITLVYKVYYGNSLDQAISMWALVISVTSNYSG 3717 L++ ++ +T R++ + + VI++V Y G++L++ I + ++ S+ Y+ Sbjct 3667 LLLIGMVFVTLRSINQYLFSFIMFVGRVISVVSLWYMGSNLEEEILL--MLASLFGTYTW 3724 Query 3718 VVTTIMFLARAIV-FVCVEYYPLLFITGNTLQCIMLVYCFLGYCCCCYFGLFCLLNRYFR 3776 M A+ I +V V L F ++ +++ Y F+GY CY+GLF L+N FR Sbjct 3725 TTALSMAAAKVIAKWVAVNV--LYFTDIPQIKIVLVCYLFIGYIISCYWGLFSLMNSLFR 3782 Query 3777 LTLGVYDYLVSTQEFRYMNSQGLLPPKSSIDAFKLNIKLLGIGGKPCIKVATVQSKMSDV 3836 + LGVY+Y +S QE RYMN+ GL PPK+S +A LN KLLGIGG P I+V+ QSK++DV Sbjct 3783 MPLGVYNYKISVQELRYMNANGLRPPKNSFEALMLNFKLLGIGGVPIIEVSQFQSKLTDV 3842 Query 3837 KCTSVVLLSVLQQLRVESSSKLWAQCVQLHNDILLAKDTTEAFEKMVSLLSVLLSMQGAV 3896 KC +VVLL+ LQ L V S+SKLW C LHN+IL D AFEK+ LL VL + AV Sbjct 3843 KCANVVLLNCLQHLHVASNSKLWQYCSTLHNEILATSDLGVAFEKLAQLLIVLFANPAAV 3902 Query 3897 D------INKLCEEMLDNRATLQAIASEFSSLPSYAAYATAQEAYEQAVSNGDS-EVVLK 3949 D I ++C++ + LQA+ SEF ++ S+ Y A++ ++A S+G + + LK Sbjct 3903 DSKCLTSIEEVCDDYAKDNTVLQALQSEFVNMASFVEYEVAKKNLDEACSSGSANQQQLK 3962 Query 3950 KLKKSLNVAKSEFDHDAAMQRKLEKMADQAMTQMYKQARSEDKRAKVTSAMQTMLFTMLR 4009 +L+K+ N+AKS ++ D A+ RKLE+MAD A+T MYK+AR DK++KV SA+QTMLF+M+R Sbjct 3963 QLEKACNIAKSAYERDRAVARKLERMADLALTNMYKEARINDKKSKVVSALQTMLFSMVR 4022 Query 4010 KLDNDALNNIINNARDGCVPLNIIPLTTAAKLMVVVPDYGTYKNTCDGNTFTYASALWEI 4069 KLDN ALN+I++NA GCVPLN IP A L ++VPD Y D TYA +W+I Sbjct 4023 KLDNQALNSILDNAVKGCVPLNAIPSLAANTLTIIVPDKSVYDQVVDNVYVTYAGNVWQI 4082 Query 4070 QQVVDADSKIVQLSEINMDNSPNLAWPLIVTALRAN--SAVKLQNNELSPVALRQMSCAA 4127 Q + D+D QL EI S + WPL++ A R N SA LQNNEL P L+ + Sbjct 4083 QTIQDSDGTNKQLHEI----SDDCNWPLVIIANRHNEVSATALQNNELMPAKLKTQVVNS 4138 Query 4128 GTTQTACTDDNALAYYNNAKGGRFVLALLSDHQDLKWARFPKSDGTGTIYTELEPPCRFV 4187 G QT T YYNN+ G+ V A+LSD LK+ + K DG + EL+PPC+F Sbjct 4139 GPDQTCNTPTQ--CYYNNSYNGKIVYAILSDVDGLKYTKILKDDGNFVV-LELDPPCKFT 4195 Query 4188 TDTPKGPKVKYLYFIKGLNNLNRGMVLGSLAATVRLQAGNATEVPANSTVLSFCAFAVDP 4247 KG K+KYLYF+KG N L RG V+G++++TVRLQAG ATE +NS++LS CAF+VDP Sbjct 4196 VQDVKGLKIKYLYFVKGCNTLARGWVVGTISSTVRLQAGTATEYASNSSILSLCAFSVDP 4255 Query 4248 AKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPEANMDQESFGGASCCLYCRCHIDH 4307 K Y D++ GG PI NCVKMLC H GTG AITV P+A Q+S+GGAS C+YCR ++H Sbjct 4256 KKTYLDFIQQGGTPIANCVKMLCDHAGTGMAITVKPDATTSQDSYGGASVCIYCRARVEH 4315 Query 4308 PNPKGFCDLKGKYVQIPTTCANDPVGFTLRNTVCTVCGMWKGYGCSCDQLREPMMQSADA 4367 P+ G C L+GK+VQ+P DPV + L + VC VCG W+ CSC + +QS D Sbjct 4316 PDVDGLCKLRGKFVQVPVG-IKDPVSYVLTHDVCQVCGFWRDGSCSCVS-TDTTVQSKD- 4372 Query 4368 STFLN 4372 + FLN Sbjct 4373 TNFLN 4377 Range 2: 1273 to 1427 Score:87.0 bits(214), Expect:5e-15, Method:Compositional matrix adjust., Identities:51/155(33%), Positives:79/155(50%), Gaps:2/155(1%) Query 1007 LTDNVAIKCIDIVKEAQSAKPTVIVNAANTHLKHGGGVAGALNKATNGAMQNESDEYIRQ 1066 +T NV DI+K ++ K V+VN AN H+ HGGGVA A+ A E+ + ++ Sbjct 1273 ITPNVCFVKGDIIKVSKRVKAEVVVNPANGHMAHGGGVAKAIAVAAGQQFVKETTDMVKS 1332 Query 1067 NGPLTVGGSCLLSGHNLAEKCLHVVGPN--LNAGEDVQLLKRAYENFNSQDVLLAPLLSA 1124 G G + +G L + L+VVGP+ + LL+R Y++ N D ++ L+SA Sbjct 1333 KGVCATGDCYVSTGGKLCKTVLNVVGPDARTQGKQSYALLERVYKHLNKYDCVVTTLISA 1392 Query 1125 GIFGAKPLQSLKMCVEIVRTQVYLAVNDKSLYDQI 1159 GIF SL + + QV L N++ +D I Sbjct 1393 GIFSVPSDVSLTYLLGTAKKQVVLVSNNQEDFDLI 1427 Range 3: 748 to 1016 Score:70.1 bits(170), Expect:7e-10, Method:Compositional matrix adjust., Identities:75/286(26%), Positives:128/286(44%), Gaps:28/286(9%) Query 714 RGLYRQCIRGKEQLQLLMP---LKAPKEVTFLEGDAHDTVLTSEEVVLKSGELEALETPI 770 RGL + L MP K ++ +L+G D L V + + L TP Sbjct 748 RGLLHSSQLPLDVYDLTMPSQVQKTKQKPIYLKGSGSDFSLADSVVEVVTTSL----TPC 803 Query 771 DSFTSGAVVGTPVCINGLMLLELENKEQYCALSPGLLAT-NNVFRLKGGAPVKG--VTFG 827 ++ V +CI + + + Y + G + + +R+ P G VTF Sbjct 804 -GYSEPPKVADKICIVDNVYMAKAGDKYYPVVVDGHVGLLDQAWRV----PCAGRCVTFK 858 Query 828 ED-TVLEVQGY-KNVKITFELDVRVDKVLNEKCSVYTVESGTEVTEFACVVAEAVVKTLQ 885 E TV E+ K +K+ +ELD + +LN C V+ V+ ++ EF VV +A+ + L Sbjct 859 EQPTVNEIASTPKTIKVFYELDKDFNTILNTACGVFEVDDTVDMEEFYAVVIDAIEEKLS 918 Query 886 PVSDLL---TPMGIDLDEWSVATFYLFDDAGEEKLSSRMYCSFYPPDEEEDCEECEDEEE 942 P +L + L + + +LFD+AGEE L+ ++YC+F P++++ EE EE+ Sbjct 919 PCKELEGVGAKVSAFLQKLEDNSLFLFDEAGEEVLAPKLYCAFTAPEDDDFLEESGVEED 978 Query 943 TCEHEYGTEDDYKGLPLEFGASTETPHVEEEEEEEDWLDDAIEAEP 988 E E L ++ E E+EE + L+D ++ P Sbjct 979 DVEGE--------ETDLTVTSAGEPCVASEQEESSEILEDTLDDGP 1016 >RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Host translation inhibitor nsp1; Short=nsp1; AltName: Full=p28; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p65; Contains: RecName: Full=Papain-like proteinase nsp3; Short=PL-PRO; AltName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=p210; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; AltName: Full=Peptide HD2; AltName: Full=p44; Contains: RecName: Full=3C-like proteinase nsp5; Short=3CL-PRO; Short=3CLp; AltName: Full=M-PRO; AltName: Full=nsp5; AltName: Full=p27; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; AltName: Full=p10; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; AltName: Full=p22; Contains: RecName: Full=Viral protein genome-linked nsp9; AltName: Full=Non-structural protein 9; Short=nsp9; AltName: Full=RNA-capping enzyme subunit nsp9; AltName: Full=p12; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; AltName: Full=p15; Contains: RecName: Full=RNA-directed RNA polymerase nsp12; Short=Pol; Short=RdRp; AltName: Full=nsp12; AltName: Full=p100; Contains: RecName: Full=Helicase nsp13; Short=Hel; AltName: Full=nsp13; AltName: Full=p67; Contains: RecName: Full=Guanine-N7 methyltransferase nsp14; Short=ExoN; AltName: Full=nsp14; Contains: RecName: Full=Uridylate-specific endoribonuclease nsp15; AltName: Full=NendoU; AltName: Full=nsp15; AltName: Full=p35; Contains: RecName: Full=2'-O-methyltransferase nsp16; AltName: Full=nsp16 [Murine hepatitis virus strain 2] Sequence ID: P0C6X8.1 Length: 7124 Range 1: 1509 to 4394 Score:1860 bits(4819), Expect:0.0, Method:Compositional matrix adjust., Identities:1108/2959(37%), Positives:1626/2959(54%), Gaps:162/2959(5%) Query 1485 SYSGQRTELGVEFLKRGDKIVYHTTGSPIEFHLDG--EVLPLDKLKSLLSLREVKTIKVF 1542 S G RT V++ + +I + G + +G +V + ++++LL+ + V Sbjct 1509 SVDGVRT---VKYFECPGEIFVSSQGKKFGYVQNGSFKVASVSQIRALLA----NKVDVL 1561 Query 1543 TTVDNTNLHTHIVDMSMTYGQQFGPTYLDGADVTKIKPHVNHEGKTFF----VLPSDDTL 1598 TVD N + V +G+ G + DG +VTK++ H+GK FF + +D Sbjct 1562 CTVDGVNFRSCCVAEGEVFGKTLGSVFCDGINVTKVRCSAIHKGKVFFQYSGLSAADLVA 1621 Query 1599 RSEAFEYYHTIDESFLGRYMSALNHTKKWKFPQVGGLTSIKWADNNCYLSSVLLALQQVE 1658 ++AF + DE L +Y + L KW G + K ++NNCY++ L LQ + Sbjct 1622 VTDAFGF----DEPQLLKYYNMLGMC-KWPVVVCGNYFAFKQSNNNCYINVACLMLQHLS 1676 Query 1659 VKFNAPALQEAYYRARAGDAANFCALILAYSNKTVGELGDVRETMTHLLQHANLESAKRV 1718 +KF+ QEA+ R+G F +L+LA + E D + M +L+ A+L A Sbjct 1677 LKFHKWQWQEAWNEFRSGKPLRFVSLVLAKGSFKFNEPSDSTDFMRVVLREADLSGATCD 1736 Query 1719 LNVVCKHCGQKTTTLKGVEAVMYMGTLSYDELKTGVSIPCVCGRNATQYLVQQESSFVMM 1778 VCK CG K KGV+AVM+ GTL +L G +I C CG N + Q F++ Sbjct 1737 FEFVCK-CGVKQEQRKGVDAVMHFGTLDKGDLAKGYTIACTCG-NKLVHCTQLNVPFLIC 1794 Query 1779 SAPPAEYKLQQGAFLCANEYTGNYQCGHYTHITAKETLYRVDGAHLTKMSEYKGPVTDVF 1838 S P KL + AN +TG GHYTH+ K D +++K+SE KG TD Sbjct 1795 SNKPEGKKLPDDV-VAANIFTGG-SLGHYTHVKCKPKYQLYDACNVSKVSEAKGNFTDCL 1852 Query 1839 Y-KETSYTTAIKPVSYKLDGVTYTEIEPKLDGYYKKGNAYYTEQPIDL-VPTQPMPNASF 1896 Y K T + K ++ LD V E P L YY + YYT+ I T + Sbjct 1853 YLKNLKQTFSSKLTTFYLDDVKCVEYNPDLSQYYCESGKYYTKPIIKAQFRTFEKVEGVY 1912 Query 1897 DNFKLTCSNTKFADDLNQMTGFK-KPASRELTVTFFPDLNGDVVAIDYRHYSTSFKKGAK 1955 NFKL A+ N GF E +T +P GDVV Y + + G Sbjct 1913 TNFKLV--GHSIAEKFNAKLGFDCNSPFTEYKITEWPTATGDVVLASDDLYVSRYSGGCV 1970 Query 1956 LVHKPILW--HINQTTNKTTY--KPNIWCLRCLWSTKPVDTSNSFE-------VLVVEDT 2004 KP++W H + TY +P++ C ++ PVD S + VLV T Sbjct 1971 TFGKPVIWLGHEEASLKSLTYFNRPSVVCEN-KFNVLPVDVSEPTDKGPVPAAVLV---T 2026 Query 2005 QGMDNLACESQTTTSEEVVENPTVQKEIIE----------CDVKTTEVVG---------N 2045 + A T ++V + +V +++ DVK ++ G + Sbjct 2027 GALSGAATAPGTAKEQKVCASDSVVDQVVSGFLSDLSGATVDVKEVKLNGVKKPIKVEDS 2086 Query 2046 VILKPSEEGVKVTQELGHEDLMAAYVEETSITIKKPNELSLALGLKTLATHGAAAINSVP 2105 V++ KV + L D+ ++ + NELS + T+ + V Sbjct 2087 VVVNDPTSETKVVKSLSIVDVYDMFLTGCRYVVWMANELSRLVNSPTVREY-------VK 2139 Query 2106 W--SKILAYVKPFL---GQTAVITSNCIKKCVQRVFSNYMPYVITLLFQLCTFTKSTNSR 2160 W +KI+ K L + + +K V +S + F C N+ Sbjct 2140 WGMTKIVIPAKLVLLRDEKQEFVAPKVVKAKVIACYS-----AVKWFFLYCFSWIKFNTD 2194 Query 2161 IKASLPTTIAKNSVKSVAKLCLDVCINYVKSPKFSKLFTIVMWLLLL-------SICLGS 2213 K T +A ++ L + S+ F +V + LL ++ L Sbjct 2195 NKVIYTTEVASKLTFNLCCLAFKNALQTFNWNVVSRGFFLVATVFLLWFNFLYANVILSD 2254 Query 2214 L---------TYVTAVLGVCLSSLGVPSYCDGVRELYINSSNVTTMDFCQGYFPCSVCLS 2264 T+V ++ ++ G+ + CD LY S FC G C +C S Sbjct 2255 FYLPNIGFFPTFVGQIVAWVKTTFGIFTLCD----LYQVSDVGYRSSFCNGSMVCELCFS 2310 Query 2265 GLDSLDSYPALETIQ-VTISSYKLD-LTFLGLAAEWLLAYMLFTKFFY-LLGLSAIMQAF 2321 G D LD+Y A+ +Q V D ++ L E ++ Y L+T FY L GL MQ Sbjct 2311 GFDMLDNYDAINVVQHVVDRRVSFDYISLFKLVVELVIGYSLYTVCFYPLFGLIG-MQLL 2369 Query 2322 FGYFASHFISNS--WLMWFIISIVQMAPVSAMVRMYIFFASFYYVWKSYVHIMDGCTSST 2379 + F+ + W F + + M P ++R YI + Y ++ H+M GC+ Sbjct 2370 TTWLPEFFMLETMHWSARFFVFVANMLPAFTLLRFYIVVTAMYKIFCLCRHVMYGCSRPG 2429 Query 2380 CMMCYKRNRATRVECTTIVNGVKRSFYVYANGGRGFCKAHNWNCLNCDTFCAGSTFISDE 2439 C+ CYKRNR+ RV+C+T+V G R + V ANGG GFC H WNCLNC F G+TFI+ E Sbjct 2430 CLFCYKRNRSVRVKCSTVVGGTLRYYDVMANGGTGFCAKHQWNCLNCSAFGPGNTFITHE 2489 Query 2440 VARDLSLQFKRPINPTDQSAYVVDSVTVKNGALHLYFDKAGQKTYERHPLSHFVNLDNLR 2499 A DLS + KRP+NPTD + Y+V V ++ L++++ GQ+ Y+ S FV+++ L Sbjct 2490 AAADLSKELKRPVNPTDSAYYLVTEVKQVGCSMRLFYERDGQRVYDDVSASLFVDMNGLL 2549 Query 2500 ANNTKGSLPINVIVFDGKSKCEESAAKSASVYYSQLMCQPILLLDQALVSDVGDSTEVSV 2559 + KG +V+V + ++ +++ +A+V+Y+Q + +P+LL+++ L++ VS Sbjct 2550 HSKVKGVPETHVVVVENEA--DKAGFLNAAVFYAQSLYRPMLLVEKKLITTANTGLSVSQ 2607 Query 2560 KMFDAYVDTFSATFSVPMEKLKALVATAHSELAKGVALDGVLSTFVSAARQG-VVDTDVD 2618 MFD YVD+ V + L + V AH+ L +GV L+ V+ TF+ AR+ +D+DV+ Sbjct 2608 TMFDLYVDSLLGVLDVDRKSLTSFVNAAHNSLKEGVQLEQVMDTFIGCARRKCAIDSDVE 2667 Query 2619 TKDVIECLKLSHHSDIEVTGDSCNNFMLTYNKVENMTPRDLGACIDCNARHINAQVAKSH 2678 TK + + + + ++ ++ T +SCNN + TY K + + DLG I NA+H+ A VAK+ Sbjct 2668 TKSITKSIMSAVNAGVDFTDESCNNLVPTYVKSDTIVAADLGVLIQNNAKHVQANVAKAA 2727 Query 2679 NVSLVWNVKDYMSLSEQLRKQIRSAAKKNNIPFRLTCATTRQVVNVITTKISLKGGKVVS 2738 NV+ +W+V + LS L+ ++R A K + +LT V ++TT SLKGG V S Sbjct 2728 NVACIWSVDAFNQLSADLQHRLRKACSKTGLKIKLTYNKQEANVPILTTPFSLKGGAVFS 2787 Query 2739 TWFKLLLKVTLLCVLAALFCYVIMPVHSLSVHDGYTNEIIGYKAIQDGVTRDIVSTDDCF 2798 + L V L+C + + +MP +++ D +K I +GV RD+ TD CF Sbjct 2788 KVLQWLFVVNLICFIVL---WALMPTYAVHKSDMQLPLYASFKVIDNGVLRDVTVTDACF 2844 Query 2799 ANKHAGFDSWFSQRGG--SYRNDKNCPVVAAIITREIGFIVPGLPGTVLRALNGDFLHFL 2856 ANK FD W+ G YRN + CPVV A+I ++IG+ + +P VLR LHF+ Sbjct 2845 ANKFIQFDQWYESTFGLVYYRNSRACPVVVAVIDQDIGYTLFNVPTKVLR-YGFHVLHFI 2903 Query 2857 PRVFSAVGNICYTPSKLIEYSDFATSACVLAAECTIFKDAMGKPVPYCYDTNLLEGSISY 2916 F+ CYTP I Y +F S CVL++ CT+ A G P PYCY ++ + Y Sbjct 2904 THAFATDSVQCYTPHMQIPYDNFYASGCVLSSLCTMLAHADGTPHPYCYTEGIMHNASLY 2963 Query 2917 SELRPDTRYVLMDGS-IIQFPNTYLEGSVRVVTTFDAEYCRHGTCERSEVGVCLSTSGRW 2975 L P RY L + + I+FP EG VR+V T YCR G CE +E GVC + + W Sbjct 2964 DSLAPHVRYNLANSNGYIRFPEVVSEGIVRIVRTRSMTYCRVGLCEDAEEGVCFNFNSSW 3023 Query 2976 VLNNEHYRALPGVFCGVDAMNLIANIFTPLVQPVGALDVSASVVAGGIIAILVTCAAYYF 3035 VLNN +YRA+PG FCG +A +LI + LV+P+ ++AS VAG I+AI+V A YY Sbjct 3024 VLNNPYYRAMPGTFCGRNAFDLIHQVLGGLVRPIDFFALTASSVAGAILAIIVVLAFYYL 3083 Query 3036 MKFRRAFGEYNHVVAANALLFLMSFTILCLAPAYSFLPGVYSIFYLYLTFYFTNDVSFLA 3095 +K +RAFG+Y VV N +++ ++F +L + Y L +Y+ FY Y T YF +++S + Sbjct 3084 IKLKRAFGDYTSVVVINVIVWCINFLMLFVFQVYPTLSCLYACFYFYTTLYFPSEISVVM 3143 Query 3096 HLQWFAMFSPIVPFWITAIYVFCISLKHFHWFFSNYLKK---RVMFNGVTFSTFEEAALC 3152 HLQW M+ I+P W IYV + H W FS Y +K V +G TFEE +L Sbjct 3144 HLQWLVMYGAIMPLWFCIIYVAVVVSNHALWLFS-YCRKLGTEVRSDG----TFEEMSLT 3198 Query 3153 TFLLNKEMYLRLRSETLLPLTQYNRYLALYNKYKYFSGALDTTSYREAACCHLAKALNDF 3212 TF++ KE Y +L++ + +NRYL+LYNKY+YFSG +DT +YREAAC LAKA+ F Sbjct 3199 TFMITKESYCKLKNS--VSDVAFNRYLSLYNKYRYFSGKMDTAAYREAACSQLAKAMETF 3256 Query 3213 S-NSGADVLYQPPQTSITSAVLQSGFRKMAFPSGKVEGCMVQVTCGTTTLNGLWLDDTVY 3271 + N+G DVLYQPP S+T++ LQSG KM FP+ KVE C+V VT G TLNGLWLDD VY Sbjct 3257 NHNNGNDVLYQPPTASVTTSFLQSGIVKMVFPTSKVEPCVVSVTYGNMTLNGLWLDDKVY 3316 Query 3272 CPRHVVCTAEDMLNPNYDDLLIRKSNHSFLVQAGNVQLRVIGHSMQNCLLRLKVDTSNPK 3331 CPRHV+C++ DM +P+Y +LL R + F V +G + L V+ + MQ LL L V NP Sbjct 3317 CPRHVICSSADMTDPDYSNLLCRVISSDFCVMSGRMSLTVMSYQMQGSLLVLTVTLQNPN 3376 Query 3332 TPKYKFVRIQPGQTFSVLACYNGSPSGVYQCAMRPNHTIKGSFLNGSCGSVGFNIDYDCV 3391 TPKY F ++PG+TF+VLA YNG G + MR ++TIKGSFL GSCGSVG+ + D V Sbjct 3377 TPKYSFGVVKPGETFTVLAAYNGKSQGAFHVTMRSSYTIKGSFLCGSCGSVGYVLTGDSV 3436 Query 3392 SFCYMHHMELPTGVHAGTDLEGKFYGPFVDRQTAQAAGTDTTITLNVLAWLYAAVINGDR 3451 F YMH +EL TG H GTD G FYGP+ D Q Q D T T+NV+AWLYAA++N Sbjct 3437 RFVYMHQLELSTGCHTGTDFSGNFYGPYRDAQVVQLPVQDYTQTVNVVAWLYAAILNRCN 3496 Query 3452 WFLNRFTTTLNDFNLVAMKYNYEPLTQDHVDILGPLSAQTGIAVLDMCAALKELLQNGMN 3511 WF+ + +L +FN+ AM + + D V L L++ TG+ V + AA+K L +G Sbjct 3497 WFVQSDSCSLEEFNVWAMTNGFSSIKADLV--LDALASMTGVTVEQILAAIKRLY-SGFQ 3553 Query 3512 GRTILGSTILEDEFTPFDVVRQCSGVTFQGKFKKIVKGTHHWMLLTFLTSLLILVQSTQW 3571 G+ ILGS +LEDE TP DV +Q +GV Q K ++VKGT W+L + L I+ +W Sbjct 3554 GKQILGSCVLEDELTPSDVYQQLAGVKLQSKRTRVVKGTCCWILASTLLFCSIISAFVKW 3613 Query 3572 SLFFFVYENAFLPFALGIMAVAAC----AMLLVKHKHAFLCLFLLPSLATVAYFN-MVYM 3626 ++F +V + LG+ A C AMLLVKHKH +L +F++P L T+ Y N +V Sbjct 3614 TMFMYVTTH-----MLGVTLCALCFVSFAMLLVKHKHLYLTMFIMPVLCTLFYTNYLVVY 3668 Query 3627 PASWVMRIMTWLELADTSLSGYRLKDCVMYASA-LVLLILMTARTVYDDAARRVWTLMNV 3685 S+ WL ++ Y D V+Y LV ++ +T R++ D ++ + + Sbjct 3669 KQSFRGLAYAWLSHFVPAVD-YTYMDEVLYGVVLLVAMVFVTMRSINHDVFSVMFLVGRL 3727 Query 3686 ITLVYKVYYGNSLDQAISMWALVISVTSNYSGVVTTIMFLARAIVFVCVEYYPLLFITG- 3744 ++LV Y+G +L++ + ++ + S+ Y+ TT++ LA A V +L+ T Sbjct 3728 VSLVSMWYFGANLEEEVLLF--LTSLFGTYTW--TTMLSLATAKVIAKWLAVNVLYFTDV 3783 Query 3745 NTLQCIMLVYCFLGYCCCCYFGLFCLLNRYFRLTLGVYDYLVSTQEFRYMNSQGLLPPKS 3804 ++ ++L Y +GY CCCY+G+ LLN FR+ LGVY+Y +S QE RYMN+ GL PP++ Sbjct 3784 PQVKLVLLSYLCIGYVCCCYWGVLSLLNSIFRMPLGVYNYKISVQELRYMNANGLRPPRN 3843 Query 3805 SIDAFKLNIKLLGIGGKPCIKVATVQSKMSDVKCTSVVLLSVLQQLRVESSSKLWAQCVQ 3864 S +A LN KLLGIGG P I+V+ +QS+++DVKC +VVLL+ LQ L + SSSKLW C Sbjct 3844 SFEALVLNFKLLGIGGVPVIEVSQIQSRLTDVKCVNVVLLNCLQHLHIASSSKLWQYCST 3903 Query 3865 LHNDILLAKDTTEAFEKMVSLLSVLLSMQGAVD------INKLCEEMLDNRATLQAIASE 3918 LHN+IL D + AF+K+ LL VL + AVD I ++ ++ + + LQA+ SE Sbjct 3904 LHNEILATSDLSVAFDKLAQLLVVLFANPAAVDSKCLASIEEVSDDYVRDSTVLQALQSE 3963 Query 3919 FSSLPSYAAYATAQEAYEQAVSNGDS-EVVLKKLKKSLNVAKSEFDHDAAMQRKLEKMAD 3977 F ++ S+ Y A++ ++A ++G + + +K+L+K+ N+AKS ++ D A+ RKLE+MAD Sbjct 3964 FVNMASFVEYELAKKNLDEAKASGSANQQQIKQLEKACNIAKSAYERDRAVARKLERMAD 4023 Query 3978 QAMTQMYKQARSEDKRAKVTSAMQTMLFTMLRKLDNDALNNIINNARDGCVPLNIIPLTT 4037 A+T MYK+AR DK++KV SA+QTMLF+M+RKLDN ALN+I++NA GCVPLN IP T Sbjct 4024 LALTNMYKEARINDKKSKVVSALQTMLFSMIRKLDNQALNSILDNAVKGCVPLNAIPSLT 4083 Query 4038 AAKLMVVVPDYGTYKNTCDGNTFTYASALWEIQQVVDADSKIVQLSEINMDNSPNLAWPL 4097 + L ++VPD + D TYA +W IQ + DAD + QL+EI++ N+ WPL Sbjct 4084 SNTLTIIVPDKQVFDQVVDNVYVTYAGNVWHIQSIQDADGAVKQLNEIDV----NITWPL 4139 Query 4098 IVTALRAN--SAVKLQNNELSPVALRQMSCAAGTTQTACTDDNALAYYNNAKGGRFVLAL 4155 ++ A R N S+V LQNNEL P LR +G+ T YYN G+ V A+ Sbjct 4140 VIAANRHNEVSSVVLQNNELMPQKLRTQVVNSGSDMNCNTPTQ--CYYNTTGMGKIVYAI 4197 Query 4156 LSDHQDLKWARFPKSDGTGTIYTELEPPCRFVTDTPKGPKVKYLYFIKGLNNLNRGMVLG 4215 LSD LK+ + K DG + EL+PPC+F KG K+KYLYF+KG N L RG V+G Sbjct 4198 LSDCDGLKYTKIVKEDGNCVV-LELDPPCKFSVQDVKGLKIKYLYFVKGCNTLARGWVVG 4256 Query 4216 SLAATVRLQAGNATEVPANSTVLSFCAFAVDPAKAYKDYLASGGQPITNCVKMLCTHTGT 4275 +L++TVRLQAG ATE +NS + S CAF+VDP K Y DY+ GG P+TNCVKMLC H GT Sbjct 4257 TLSSTVRLQAGTATEYASNSAIRSLCAFSVDPKKTYLDYIQQGGAPVTNCVKMLCDHAGT 4316 Query 4276 GQAITVTPEANMDQESFGGASCCLYCRCHIDHPNPKGFCDLKGKYVQIPTTCANDPVGFT 4335 G AIT+ PEA +Q+S+GGAS C+YCR ++HP+ G C L+GK+VQ+P DPV + Sbjct 4317 GMAITIKPEATTNQDSYGGASVCIYCRSRVEHPDVDGLCKLRGKFVQVPLG-IKDPVSYV 4375 Query 4336 LRNTVCTVCGMWKGYGCSC 4354 L + VC VCG W+ CSC Sbjct 4376 LTHDVCQVCGFWRDGSCSC 4394 Range 2: 577 to 1013 Score:71.2 bits(173), Expect:3e-10, Method:Compositional matrix adjust., Identities:114/457(25%), Positives:191/457(41%), Gaps:50/457(10%) Query 570 LDGISEQSLRLVDA-------MVYTSDLLTNSVVVMAYVTGGLVQQTMQWLSNMLGTAVD 622 LDG+ +S L+ + MV S +T+ + MA + V+ +++ + G Sbjct 577 LDGLVPRSYYLIKSGQAFTSMMVNFSHEVTDMCMDMALLFMHDVKVATKYVKKVTGKLAV 636 Query 623 KLKPVFTWVEAKLSAGVEFLRD------AWEILKFLITGVFDVIKGQIQVATDNIKECVK 676 + K + V K++ + D W + L+ G+F V G I +D + E VK Sbjct 637 RFKALGVAVVRKITEWFDLAVDTAASAAGWLCYQ-LVNGLFAVANGGITFLSD-VPELVK 694 Query 677 IFLGVVNKALEMCLDQVTIAGTKLRALNLGEVFIAQSRGLYRQC----IRGKEQLQLLMP 732 F+ ++ +D +++ + L L + V A +R C + K +MP Sbjct 695 NFVDKFKVFFKVLIDSMSV--SVLSGLTV--VKTASNRVCLAGCKVYEVVQKRLSAYVMP 750 Query 733 LKAPKEVTFLEGDAHDTVLTSEEVVLKSGEL--EALETPIDSFTSGAVVGT---PVCING 787 + E T L G+ V+ + V + L + P SF VV C + Sbjct 751 VGC-NEATCLVGEIEPAVVEDDVVDVVKAPLTYQGCCKPPTSFEKICVVDKLYMAKCGDQ 809 Query 788 LMLLELENKEQYCALSPGLLATNNVFRLKGGAPVKGVTFGED-TVLEVQGYKNVKITFEL 846 + ++N + G+L F G K V F + V E+ + +KI F L Sbjct 810 FYPVVVDND------TIGVLDQCWRFPCAG----KKVEFNDKPKVKEIPSTRKIKINFAL 859 Query 847 DVRVDKVLNEKCSVYTVESGTEVTEFACVVAEAVVKTLQPVSD---LLTPMGIDLDEWSV 903 D D VL++ CS + V+ + E VV +AV TL P + + T + L+ + Sbjct 860 DATFDSVLSKACSEFEVDKDVTLDELLDVVLDAVESTLSPCKEHDVIGTKVCALLNRLAE 919 Query 904 ATFYLFDDAGEEKLSSRMYCSFYPPDEEEDCEECEDEEETCEHEYGTEDDYKGLPL---- 959 YLFD+ GEE ++ +MYCSF PD +EDC D + E++ DD L Sbjct 920 DYVYLFDEGGEEVIAPKMYCSFSAPD-DEDCVA-ADVVDADENQGDDADDSAALVTDTQE 977 Query 960 EFGASTETPHVEEEEEEEDWLDDAIEAEPEPEPLPEE 996 E G + V E + D + +A + E +P+ E Sbjct 978 EDGVAKGQVGVAESDARLDQV-EAFDIEKVEDPILNE 1013 Range 3: 1267 to 1421 Score:61.6 bits(148), Expect:2e-07, Method:Compositional matrix adjust., Identities:52/155(34%), Positives:80/155(51%), Gaps:2/155(1%) Query 1007 LTDNVAIKCIDIVKEAQSAKPTVIVNAANTHLKHGGGVAGALNKATNGAMQNESDEYIRQ 1066 +T NV D++K + VIVN AN + HG GVAGA+ KA + E+ + ++ Sbjct 1267 ITPNVCFVKGDVIKVLRRVGAEVIVNPANGRMAHGAGVAGAIAKAAGKSFIKETADMVKN 1326 Query 1067 NGPLTVGGSCLLSGHNLAEKCLHVVGPNL--NAGEDVQLLKRAYENFNSQDVLLAPLLSA 1124 G VG +G NL + L++VGP+ + + L+RAY++ N D ++ L+SA Sbjct 1327 QGVCQVGECYESTGGNLCKTVLNIVGPDARGHGKQCYSFLERAYQHINKCDDVVTTLISA 1386 Query 1125 GIFGAKPLQSLKMCVEIVRTQVYLAVNDKSLYDQI 1159 GIF SL + +V V L N+K +D I Sbjct 1387 GIFSVPTDVSLTYLIGVVTKNVILVSNNKDDFDVI 1421 >RecName: Full=Replicase polyprotein 1a; Short=pp1a; AltName: Full=ORF1a polyprotein; Contains: RecName: Full=Non-structural protein 1; Short=nsp1; AltName: Full=Leader protein; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p65 homolog; Contains: RecName: Full=Papain-like protease nsp3; Short=PL-PRO; AltName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=PL2-PRO; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; Contains: RecName: Full=3C-like proteinase nsp5; Short=3CL-PRO; Short=3CLp; AltName: Full=nsp5; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; Contains: RecName: Full=RNA-capping enzyme subunit nsp9; AltName: Full=Non-structural protein 9; Short=nsp9; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; Contains: RecName: Full=Non-structural protein 11; Short=nsp11 [Bat coronavirus (BtCoV/133/2005)] Sequence ID: P0C6F7.1 Length: 4441 Range 1: 2241 to 4435 Score:1858 bits(4814), Expect:0.0, Method:Compositional matrix adjust., Identities:967/2219(44%), Positives:1383/2219(62%), Gaps:65/2219(2%) Query 2195 SKLFTIVMWLLLLS--ICLGSLTYVTAVLGVCLSSLGVPSYCDGVRELYINSSNVTTMDF 2252 S ++ +V++ +LS + L T + A+ S LG+ + CDG+ Y N+S +DF Sbjct 2241 SSIYHLVIFNQVLSSDVMLEDATGILAMYKEVRSYLGIRTLCDGLAVEYRNTS-FDVVDF 2299 Query 2253 CQGY-FPCSVCLSGLDSLDSYPALETIQVTISSYKLDLTFLGLAAEWLLAYMLFTKFFYL 2311 C C CL G DSL Y AL+ +Q I+SY L++ ++ A E+ LAY+L+T F + Sbjct 2300 CSNRSVLCQWCLIGQDSLTRYSALQMLQTHITSYVLNIDWIWFALEFFLAYVLYTSSFNV 2359 Query 2312 LGLSAIMQAFFGYFASHFISNSWLMW-FIIS----IVQMAPVSAMVRMYIFFASFYYVWK 2366 L L Q FF Y S F++ W + +I+S +V P+ +VR+Y F A +++ K Sbjct 2360 LLLVVTAQYFFAY-TSAFVN--WRAYNYIVSGLFFLVTHIPLHGLVRVYNFLACLWFLRK 2416 Query 2367 SYVHIMDGCTSSTCMMCYKRNRATRVECTTIVNGVKRSFYVYANGGRGFCKAHNWNCLNC 2426 Y H+++GC + C++CYKRNR TRVE +TIV G KR+FY+ ANGG +C HNWNC+ C Sbjct 2417 FYSHVINGCKDTACLLCYKRNRLTRVEASTIVCGTKRTFYIAANGGTSYCCKHNWNCVEC 2476 Query 2427 DTFCAGSTFISDEVARDLSLQFKRPINPTDQSAYVVDSVTVKNGALHLYFDKAGQKTYER 2486 DT G+TFI EVA DL+ +R I PTDQS Y VDSV VK+ + L++++ G YER Sbjct 2477 DTAGVGNTFICTEVANDLTTTLRRLIKPTDQSHYYVDSVVVKDAVVELHYNRDGSSCYER 2536 Query 2487 HPLSHFVNLDNLRAN---NTKGSLP-INVIVFDGKSKCEESAAKSASVYYSQLMCQPILL 2542 +PL +F NL+ L+ T +P N +++D + +E+ A+SA VYYSQ++C+P+LL Sbjct 2537 YPLCYFTNLEKLKFKEVCKTPTGIPEHNFLIYDTNDRGQENLARSACVYYSQVLCKPMLL 2596 Query 2543 LDQALVSDVGDSTEVSVKMFDAYVDTFSATFSVPMEKLKALVATAHSELAKGVALDGVLS 2602 +D LV+ VGDS E+++KM D+++++F + FSV +KL+ L+ TA + +G VL Sbjct 2597 VDVNLVTTVGDSREIAIKMLDSFINSFISLFSVSRDKLEKLINTARDCVRRGDDFQTVLK 2656 Query 2603 TFVSAAR-QGVVDTDVDTKDVIECLKLSHHSDIEVTGDSCNNFMLTYNKVENMTPRDLGA 2661 TF AAR V++DV+T V++ L+ +H +DI++T + NN++ Y K +++ DLG Sbjct 2657 TFTDAARGHAGVESDVETTMVVDALQYAHKNDIQLTTECYNNYVPGYIKPDSINTLDLGC 2716 Query 2662 CIDCNARHINAQVAKSHNVSLVWNVKDYMSLSEQLRKQIRSAAKKNNIPFRLTCATTRQV 2721 ID A +N ++ N + VWN DYM LS+ ++QIR A +K NIPFRLT + R Sbjct 2717 LIDLKAASVNQTSMRNANGACVWNSGDYMKLSDSFKRQIRIACRKCNIPFRLTTSKLRAA 2776 Query 2722 VNVITTKISLKGGKVVSTWFKLLLKV-----------TLLCVLAALFCYVIMPVHSLSVH 2770 N+++ K S K+V LL+V TL A+ + +P +S++ Sbjct 2777 DNILSVKFS--ATKIVGGAPSWLLRVRDLTVKGYCILTLFVFTVAVLSWFCLPSYSIATV 2834 Query 2771 DGYTNEIIGYKAIQDGVTRDIVSTDDCFANKHAGFDSWFSQ-RGGSYRNDKNCPVVAAII 2829 + + I+ YK I++G+ RDI D CFANK+ F WF++ GG YRN +CP+ A+I Sbjct 2835 NFNDDRILTYKVIENGIVRDIAPNDACFANKYGHFSKWFNENHGGVYRNSVDCPITIAVI 2894 Query 2830 TREIGFIVPGLPGTVLRALNGDFLHFLPRVFSAVGNICYTPSKLIEYSDFATSACVLAAE 2889 G V +P T L + + F+ RVF A N+C+TP+ I Y F+ S CVL++E Sbjct 2895 AGVAGARVANVPAT-LAWVGRQIVLFVSRVF-ANTNVCFTPTNEIPYDTFSDSGCVLSSE 2952 Query 2890 CTIFKDAMGKPVPYCYDTNLLEGSISYSELRPDTRYVLMDGSI-IQFPNTYLEGSVRVVT 2948 CT+F+DA G P+CYD +L G+ SY++++P RY + D + I+FP E ++R+ Sbjct 2953 CTLFRDAEGNLNPFCYDPTVLPGASSYADMKPHVRYDMYDSDMYIKFPEVIFESTLRITK 3012 Query 2949 TFDAEYCRHGTCERSEVGVCLSTSGRWVLNNEHYRALPGVFCGVDAMNLIANIFTPLVQP 3008 T +YCR G+CE S GVC+ST+G W L N++Y PG++CG D +++ + L QP Sbjct 3013 TLATQYCRFGSCEESAAGVCISTNGSWALYNQNYSTRPGIYCGDDYFDIVRRLAVSLFQP 3072 Query 3009 VGALDVSASVVAGGIIAILVTCAAYYFMKFRRAFGEYNHVVAANALLFLMSFTILCLAPA 3068 V +S S+ G ++ + +T A YY K +RA +Y + L++ LC A Sbjct 3073 VTYFQLSTSLAMGLVLCVFLTAAFYYINKVKRALADYTQCAVVAVVAALLNSLCLCFIVA 3132 Query 3069 YSFLPGVYSIFYLYLTFYFTNDVSFLAHLQWFAMFSPIVPFWITAIYVFCISLKHFHWFF 3128 L Y+ Y Y TFY T + +F+ H+ W+ MF +VP W+ A Y + L+H W Sbjct 3133 NPLLVAPYTAMYYYATFYLTGEPAFIMHISWYVMFGTVVPIWMLASYTVGVMLRHLFWVL 3192 Query 3129 SNYLKKRV--MFNGVTFSTFEEAALCTFLLNKEMYLRLRSETLLPLTQYNRYLALYNKYK 3186 + + KK V +G +F++AA F++ K+ Y+ LR+ + + RYL+L+NKYK Sbjct 3193 AYFSKKHVDVFTDGKLNCSFQDAASNIFVIGKDTYVALRNA--ITQDSFVRYLSLFNKYK 3250 Query 3187 YFSGALDTTSYREAACCHLAKALNDFSNSGADVLYQPPQTSITSAVLQSGFRKMAFPSGK 3246 Y+SGA+DT SYREA HL KAL +S +G+D+LYQPP S+TS+VLQSG KM+ PSG Sbjct 3251 YYSGAMDTASYREACAAHLCKALQTYSETGSDILYQPPNCSVTSSVLQSGLVKMSAPSGA 3310 Query 3247 VEGCMVQVTCGTTTLNGLWLDDTVYCPRHVVCTAEDMLNPNYDDLLIRKSNHSFLVQ--- 3303 VE C+VQVTCG+ TLNGLWLD+TV+CPRH++C A+ + +PNYD LLI K+NHSF+VQ Sbjct 3311 VENCIVQVTCGSMTLNGLWLDNTVWCPRHIMCPADQLTDPNYDALLISKTNHSFIVQKHI 3370 Query 3304 AGNVQLRVIGHSMQNCLLRLKVDTSNPKTPKYKFVRIQPGQTFSVLACYNGSPSGVYQCA 3363 LRV+ HSM LL+L VD +NP TP Y F ++PG +FSVLACYNG P+GV+ Sbjct 3371 GAQANLRVVAHSMVGVLLKLTVDVANPSTPAYTFSTVKPGASFSVLACYNGKPTGVFTVN 3430 Query 3364 MRPNHTIKGSFLNGSCGSVGFNIDYDCVSFCYMHHMELPTGVHAGTDLEGKFYGPFVDRQ 3423 +R N TIKGSFL GSCGSVG+ + ++F YMH MEL G H G+ +G YG F D+Q Sbjct 3431 LRHNSTIKGSFLCGSCGSVGYTENGGVLNFVYMHQMELSNGTHTGSSFDGVMYGAFEDKQ 3490 Query 3424 TAQAAGTDTTITLNVLAWLYAAVINGDRWFLNRFTTTLNDFNLVAMKYNY-EPLTQDHVD 3482 T Q TD T+NV+AWLYAAV+NG +WF+ + +N A+ + E + +D Sbjct 3491 THQLQLTDKYCTINVVAWLYAAVLNGCKWFVKPTRVGIVTYNEWALSNQFTEFVGTQSID 3550 Query 3483 ILGPLSAQTGIAVLDMCAALKELLQNGMNGRTILGSTILEDEFTPFDVVRQCSGVTFQGK 3542 +L + +TG++V M AA++ L G G+TILG + LEDEFTP DV Q GV Q Sbjct 3551 ML---AHRTGVSVEQMLAAIQSL-HAGFQGKTILGQSTLEDEFTPDDVNMQVMGVVMQSG 3606 Query 3543 FKKIVKGTHHWMLLTFL---TSLLILVQSTQWSLFFFVYENAFLPFALGIMAVAACAMLL 3599 K+I G HW++ T + S++ L + T W+ F P G MA C M Sbjct 3607 VKRISYGFMHWLMSTLVLAYVSVMQLTKFTMWTYLFETIPTQMTPLLFGFMA---CVMFT 3663 Query 3600 VKHKHAFLCLFLLPSLATVAYFNMVYMP----ASWVMRIMTWLELADTSLSGYRLKDCVM 3655 VKHKH FL LFLLP + Y N+VY P +S ++ + WL + L D + Sbjct 3664 VKHKHTFLSLFLLPVALCLTYANIVYEPQTLVSSTLIAVANWLTPTSVYMRTTHL-DFGL 3722 Query 3656 YASALVLLILMTARTVYDDAARRVWTLMNVITLVYKVYYGNSLDQAISMWALVISVTSNY 3715 Y S +L ++ R + L + + Y G+ I+ + ++TS+Y Sbjct 3723 YISLSFVLAIIVRRLYRPSMSNLALALCSGVMWFYTYVIGDH-SSPITYLMFITTLTSDY 3781 Query 3716 SGVVTTIMFLARAIVFVCVEYYPLLFITGNTLQCIMLVYCFLGYCCCCYFGLFCLLNRYF 3775 + V + LA+ I + Y P L ++ ++L+Y LGY C YFG+F LLN Sbjct 3782 TITVFATVNLAKFISGLVFLYAPHLGFILPEVKLVLLIYLCLGYMCTMYFGVFSLLNLKL 3841 Query 3776 RLTLGVYDYLVSTQEFRYMNSQGLLPPKSSIDAFKLNIKLLGIGGKPCIKVATVQSKMSD 3835 R+ LGVYDY VSTQEFR++ GL P++S +A LN KLLGIGG PCIKVATVQSK++D Sbjct 3842 RVPLGVYDYSVSTQEFRFLTGNGLHAPRNSWEALILNFKLLGIGGTPCIKVATVQSKLTD 3901 Query 3836 VKCTSVVLLSVLQQLRVESSSKLWAQCVQLHNDILLAKDTTEAFEKMVSLLSVLLSMQGA 3895 +KCTSVVLL+VLQQL +ES+SK W+ CV+LHN+IL A D TEAFE+ V L + L+S Sbjct 3902 LKCTSVVLLTVLQQLHLESNSKAWSYCVKLHNEILAAVDPTEAFERFVCLFATLMSFSAN 3961 Query 3896 VDINKLCEEMLDNRATLQAIASEFSSLPSYAAYATAQEAYEQAVSNGD-SEVVLKKLKKS 3954 VD++ L ++ +N + LQA +EFS L +YA TAQ +Y++A+++GD S VLK L+K+ Sbjct 3962 VDLDALANDLFENSSVLQATLTEFSHLATYAELETAQSSYQKALNSGDASPQVLKALQKA 4021 Query 3955 LNVAKSEFDHDAAMQRKLEKMADQAMTQMYKQARSEDKRAKVTSAMQTMLFTMLRKLDND 4014 +NVAK+ ++ D A+ RKLE+MA+QAMT MYKQAR+EDK+AK+ SAMQTMLF M++KLDND Sbjct 4022 VNVAKNAYEKDKAVARKLERMAEQAMTSMYKQARAEDKKAKIVSAMQTMLFGMIKKLDND 4081 Query 4015 ALNNIINNARDGCVPLNIIPLTTAAKLMVVVPDYGTYKNTCDGNTFTYASALWEIQQVVD 4074 LN +I NAR+GCVPL+I+PL + KL VV+PD + + + +YA +LW++ + + Sbjct 4082 VLNGVIANARNGCVPLSIVPLCASNKLRVVIPDISVWNKVVNWPSVSYAGSLWDVTVINN 4141 Query 4075 ADSKIVQLSEINMDNSPNLAWPLIVTALRA-NSAVKLQNNELSPVALRQMSCAAGTTQTA 4133 D+++V+ +++ ++ + +L WPL++ RA +SAVKLQNNE+ P L+ M AG Q Sbjct 4142 VDNEVVKPTDV-VETNESLTWPLVIECSRASSSAVKLQNNEIHPKGLKTMVVTAGIDQVN 4200 Query 4134 CTDDNALAYYNNAKGGRFVLALLSDHQDLKWARFPKSDGTGTIYTELEPPCRFVTDTPKG 4193 C+ +A+AYY +G R V+ LLS++ LKWA+ D G I EL+PPC+F+ PKG Sbjct 4201 CS-SSAVAYYEPVQGHRMVMGLLSENAHLKWAKVEGKD--GFINIELQPPCKFLIAGPKG 4257 Query 4194 PKVKYLYFIKGLNNLNRGMVLGSLAATVRLQAGNATEVPANSTVLSFCAFAVDPAKAYKD 4253 P+++YLYF+K LNNL+RG +LG +AATVRLQAG TE +NSTVL+ AFAVDPAKAY D Sbjct 4258 PEIRYLYFVKNLNNLHRGQLLGHIAATVRLQAGANTEFASNSTVLTLVAFAVDPAKAYLD 4317 Query 4254 YLASGGQPITNCVKMLCTHTGTGQAITVTPEANMDQESFGGASCCLYCRCHIDHPNPKGF 4313 Y+ SGG P++N VKML TGTG AI+V PEA DQE++GGAS CLYCR HI+HP+ G Sbjct 4318 YVGSGGTPLSNYVKMLAPKTGTGVAISVKPEATADQETYGGASVCLYCRAHIEHPDVSGV 4377 Query 4314 CDLKGKYVQIPTTCANDPVGFTLRNTVCTVCGMWKGYGCSCDQLREPMMQSADASTFLN 4372 C K ++VQIP DPVGF L+N C VC W GYGC+CD LR + + + FLN Sbjct 4378 CKYKTRFVQIPAH-VRDPVGFLLKNVPCNVCQYWVGYGCNCDALRNNTVPQSKDTNFLN 4435 Range 2: 1364 to 2101 Score:304 bits(778), Expect:1e-80, Method:Compositional matrix adjust., Identities:232/759(31%), Positives:367/759(48%), Gaps:59/759(7%) Query 1375 KYKGIKVQEGI--VDYGVRFFFYTSKEPVASIITKLNSLNEPLVTMPIGYVTHGLNLEEA 1432 + KG+ + I VD GV ++ Y++++ + +I N + MP GYVTHGL+L ++ Sbjct 1364 RTKGVDTTKKIQTVD-GVSYYLYSARDALTDVIAAANGC-PGICAMPFGYVTHGLDLAQS 1421 Query 1433 ARCMRSLKAPAVVSVSSPDAVTAYNGYLTSSSKTPEEYFVETTSLAGSYRDWSY-SGQRT 1491 +R +K P V ++S + + N + + +TPE F+ + G Y W SG Sbjct 1422 GNYVRQVKVPYVCLLASKEQIPIMNSDV--AIQTPETAFINNVTSNGGYHSWHLVSGDLI 1479 Query 1492 ELGVEFLKRGDKIVYHTTGSPI-----EFHL--DGEVLPLDKL---KSLLSLREVK--TI 1539 V + K + H +G I +F++ + LP L ++ L+ R + I Sbjct 1480 VKDVCYKK-----LLHWSGQTICYADNKFYVVKNDVALPFSDLEACRAYLTSRAAQQVNI 1534 Query 1540 KVFTTVDNTNLHTHIVDMSMTYGQQFGPTYLDGADVTKIKPHVNHEGKTFFVLPSDDTLR 1599 +V T+D N T I++ + T+ +Q G T+ G D++ P V G++ FV +D+ Sbjct 1535 EVLVTIDGVNFRTVILNDATTFRKQLGATFYKGVDISDALPTVKMGGESLFV--ADNLSE 1592 Query 1600 SEAF---EYYHTIDESFLGRYMSALNHTKKWKFPQVGGLTSIKWADNNCYLSSVLLALQQ 1656 SE EYY T D +FL RY S ++WKF G+ S+K ++ NCY+++ ++ + Sbjct 1593 SEEVVLKEYYGTSDVTFLQRYYSLQPLVQQWKFVVHDGVKSLKLSNYNCYINATIMMIDM 1652 Query 1657 V-EVKFNAPALQEAYYRARAGDAANFCALILAYSNKTVGELGDVRETMTHLLQHANLE-S 1714 + ++KF PALQ AY R + GD +F ALI+AY + T D + + LL A L S Sbjct 1653 LHDIKFVVPALQNAYLRYKGGDPYDFLALIMAYGDCTFDNPDDEAKLLHTLLAKAELTVS 1712 Query 1715 AKRVLNVVCKHCGQKTTTLKGVEAVMYMGTLSYDELKTGVSIPCVCGRNATQYLVQQESS 1774 AK V C CG + G+ A +Y G S +EL++ + CVCG + LV+ + Sbjct 1713 AKMVWREWCTVCGIRDIEYTGMRACVYAGVNSMEELQSVFNETCVCGSVKHRQLVEHSTP 1772 Query 1775 FVMMSAPPAEYKLQQG---AFLCANEYTG-NYQCGHYTHITAKETL-YRVDGAHLTKMSE 1829 ++++S E K+ + N + G GHY H+ K+ L Y+ D LTK S+ Sbjct 1773 WLLVSG-LNEVKVSTSTDPVYRAFNVFQGVETSVGHYVHVRVKDGLFYKYDSGSLTKTSD 1831 Query 1830 YKGPVTDVFYKETSYTTAIKPVSYKLDGVTYTEIEPKLDGYYKKGNAYYTEQP-IDLVPT 1888 K +T V+Y + YT V Y LDGVT E+ P L YY K YYT +P I P Sbjct 1832 MKCKMTSVWYPKVRYTADCNVVVYDLDGVTKVEVNPDLSNYYMKDGKYYTSKPTIKYSPA 1891 Query 1889 QPMPNASFDNFKLTCSNTKFADD-----LNQMTGFK--KPASRELTVTFFPDLNGDVVAI 1941 +P + + N L + D N + GF KP S++LT + P+ +GDV+ Sbjct 1892 TILPGSVYSNSCLVGVDGTPGSDTISKFFNDLLGFDETKPISKKLTYSLLPNEDGDVLLS 1951 Query 1942 DYRHYSTSFKKGAKLVHKPILWHINQTTNKTTYKPNIWCLRCLWSTKPVDTSNSFEVLVV 2001 ++ +Y+ +KKG L KPILW N + KPN LR L+ P+ N + VL Sbjct 1952 EFNNYNPVYKKGVMLKGKPILWVNNGVCDSALNKPNRASLRQLYDVAPIVLDNKYTVLQD 2011 Query 2002 EDTQGMDNLACESQTTTSEEVVENPTV-QKEIIECDVKTTE---VVGNVILKPSEEGVKV 2057 +Q ++ + VVE+ ++ +++IE K V GN GV V Sbjct 2012 NTSQLIE---------PNVPVVEDVSITTRKLIEVKCKGLNKPFVKGNFSFVNDPNGVTV 2062 Query 2058 TQELGHEDLMAAYVE-ETSITIKKPNELSLALGLKTLAT 2095 LG +L A YV+ T + + N S L T+ + Sbjct 2063 VDTLGLTELRALYVDINTRYIVLRDNNWSSLFKLHTVES 2101 Range 3: 22 to 957 Score:167 bits(422), Expect:3e-39, Method:Compositional matrix adjust., Identities:238/981(24%), Positives:408/981(41%), Gaps:107/981(10%) Query 9 NEKT--HVQLSLPVLQVRDV---LVRGFGDSVEEALSEAREHLK-NGTCGLVELE-KGVL 61 NEK HV ++P+ D+ L F D E A ++ LK G V + + + Sbjct 22 NEKRSDHVACTVPLCDTEDMASKLTPWFEDG-ETAFNQVSSILKEKGKILFVPMHMQRAM 80 Query 62 PQLEQPYVFIKRSDALSTNHGHKVVELVAELD--GIQFGRSGIT---LGVLVPHVGETPI 116 L P V++ H +V +A D G R+ + LG+ P+ Sbjct 81 KFLPGPRVYLVERLTGGMLSKHFLVNQLAYKDHVGAAMMRTTLNVKPLGMFFPYDSSLET 140 Query 117 AYRNVLLRKNGNKGAGGHSFGIDLKS---YDLGDELGTDPIEDYEQNWNTKHGSGALREL 173 LLRKNG G D K ++ D+L DP Y QN L Sbjct 141 GEHTFLLRKNGLGGQLFRERPWDRKETPYVEILDDLEADPTGKYSQN------------L 188 Query 174 TRELNGGVVTRYVDNNFCGPDGYPLECIKDFLARAGKSMCTLSE-QLDY---IESKRGVY 229 ++L GG VD CG +G P+ +A+ G + TL++ ++D ++S R + Sbjct 189 LKKLIGGDCIP-VDQYMCGKNGKPIADYAKIVAKEG--LTTLADIEVDVKSRMDSDRFI- 244 Query 230 CCREHEHEIVWFTERSEKSYEHQTPFEIKSAKKFDTFKGECPKFVFPLNSKVKVIQP-RV 288 + + +VW R Y QT F + S + D K P+ F + S++ ++ P + Sbjct 245 VLNKKLYRVVWNVTRRNVPYSKQTAFTVVSVIQCDD-KESVPEHTFTIGSQILMVSPLKA 303 Query 289 EKKKTEGFMGRI-RSVYPVATPQECNDMHLSTLMKCNHCDEVSWQTCDFLKATCEQCGTE 347 K R+ + Y Q+ ++ S + CN C +W T + ++ CG Sbjct 304 TNNKNFNLKQRLLHTFYGKEAVQQPGYIYHSAYVDCNACGRGTWCTGNAIQGFACDCGAN 363 Query 348 NLVCE-GPTTCGYLPTNAVVKMPCPACQDPEVGPEHSVADYHNHSNIETRLRKGGR--TK 404 + + G +P NA+ CP + H+ A ++ + + + GG+ T Sbjct 364 YSANDVDLQSSGLVPKNALFLANCPCANNGAC--SHNAAQVYSILDGKACVEVGGKSFTL 421 Query 405 CFGGCVFSYVGCYNKRAYWVPRASA---NIG-ANHTGITG---ENVETLNEDLLEILNRE 457 FGG V++Y+GC + Y+VPRA + IG A TG TG + VET N L + Sbjct 422 TFGGVVYAYMGCCDGTMYFVPRAKSCVSRIGDAIFTGCTGTWDKVVETANL----FLEKA 477 Query 458 RVNINIVGDFRFNEEVAIILASFSASPSAFIETVKGLDYKSFKVIVESCGN--YKVTNGK 515 + ++N F E ++LA S + S F E S++ + + N + VT G Sbjct 478 QHSLNFCQQFALTE---VVLAILSGTTSTFEELRDLCHNASYEKVRDHLVNHGFVVTIGD 534 Query 516 PVTGAWNIGQQ----RSILTPLCGFPS------QAAGVIRSIFSRTLDAANHSILDLQRA 565 + A NIG +I P F + A + I S A ++ ++ Sbjct 535 YIRDAINIGANGVCNATINAPFIAFTGLGESFKKVAAIPWKICSNLKSALDYYCSNIM-F 593 Query 566 AVTTLD---GISEQSLRLVDAMVYTSDLLTNSVVVMAYVTGGLVQQTMQWLSNMLGTAVD 622 V D +++ L+D T + S V+ Y+ + +SN TA Sbjct 594 RVFPYDIPCDVNDFVELLLDCGKLT---VATSYFVLRYLDEKF-DTVLGTVSNACQTA-- 647 Query 623 KLKPVFTWVEAKLSAGVEFLRDAWEILKFLITGVFDVIKGQIQVATDNIKECVKIFLGVV 682 L A A F+ D +++ K L+ ++ ++ + V+ L ++ Sbjct 648 -LSSFLNACVAASRATAGFISDMFKLFKVLMHKLYVYTSCGYVAVAEHSSKIVQQVLDIM 706 Query 683 NKALEMCLDQVTIAGTKLRAL----------NLGEVFIAQSRGLYRQCIRGKEQLQLLMP 732 +KA+++ V+ AGTKL A+ N G F ++ Q +Q+ L++P Sbjct 707 SKAMKLLHTNVSWAGTKLSAIIYEGREALLFNSGTYFCLSTKAKTLQ-----DQMNLVLP 761 Query 733 LKAPKEVTFL-----EGDAHDTVLTSEEVVLKSGELEALETPIDSFTSGAVVGTPVCING 787 K+ + D D S V + G+LE P + +VG V ++ Sbjct 762 GDYNKKTLGILDPVPNADTIDVTANSTVVDVVHGQLE----PTNEHGPSMIVGNYVLVSD 817 Query 788 LMLLELENKEQYCALSPGLLATNNVFRLKGGAPVKGVTFGEDTVLEVQGYKNVKITFELD 847 + + +++E Y G + + +FRLKGG P K VTFG+ +EV Y++V IT+++ Sbjct 818 KLFVRTDDEEFYPLCINGKVVST-LFRLKGGMPSKKVTFGDVNTVEVTAYRSVSITYDIH 876 Query 848 VRVDKVL-NEKCSVYTVESGTEVTEFACVVAEAVVKTLQPVSDLLTPMGIDLDEWSVATF 906 +D +L + K + +TVE V +F V+ + V+ L P+ G D++++ Sbjct 877 PVLDALLSSSKLATFTVEKDLLVEDFVDVIKDEVLTLLTPLLRGYDIDGFDVEDFIDVPC 936 Query 907 YLFDDAGEEKLSSRMYCSFYP 927 Y+++ G+ SS M S P Sbjct 937 YVYNQDGDCAWSSNMTFSINP 957 Range 4: 1168 to 1297 Score:130 bits(328), Expect:3e-28, Method:Compositional matrix adjust., Identities:63/130(48%), Positives:85/130(65%), Gaps:0/130(0%) Query 1007 LTDNVAIKCIDIVKEAQSAKPTVIVNAANTHLKHGGGVAGALNKATNGAMQNESDEYIRQ 1066 + ++V + D ++ A V+VNAAN HLKHGGG+AGA+NKA+ G +Q ESDEYI Sbjct 1168 INNSVTLVLGDAIQIASLLPKCVLVNAANRHLKHGGGIAGAINKASGGDVQEESDEYISN 1227 Query 1067 NGPLTVGGSCLLSGHNLAEKCLHVVGPNLNAGEDVQLLKRAYENFNSQDVLLAPLLSAGI 1126 +GPL VG S LL G+ LA+ L VVGP+ ED LLKR Y+ FN +++ PL+S+GI Sbjct 1228 SGPLHVGDSVLLKGYGLADAILRVVGPDARNNEDAALLKRCYKTFNKHTIVVTPLISSGI 1287 Query 1127 FGAKPLQSLK 1136 F P S + Sbjct 1288 FSVDPKVSFE 1297 >RecName: Full=Replicase polyprotein 1a; Short=pp1a; AltName: Full=ORF1a polyprotein; Contains: RecName: Full=Non-structural protein 1; Short=nsp1; AltName: Full=Leader protein; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p65 homolog; Contains: RecName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=PL2-PRO; AltName: Full=Papain-like proteinase; Short=PL-PRO; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; Contains: RecName: Full=3C-like proteinase nsp5; Short=3CL-PRO; Short=3CLp; AltName: Full=nsp5; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; Contains: RecName: Full=RNA-capping enzyme subunit nsp9; AltName: Full=Non-structural protein 9; Short=nsp9; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; Contains: RecName: Full=Non-structural protein 11; Short=nsp11 [Tylonycteris bat coronavirus HKU4] Sequence ID: P0C6T4.1 Length: 4434 Range 1: 2234 to 4428 Score:1857 bits(4810), Expect:0.0, Method:Compositional matrix adjust., Identities:964/2219(43%), Positives:1389/2219(62%), Gaps:65/2219(2%) Query 2195 SKLFTIVMWLLLLS--ICLGSLTYVTAVLGVCLSSLGVPSYCDGVRELYINSSNVTTMDF 2252 S ++ +V++ +LS + L T + A+ S LG+ + CDG+ Y N+S M+F Sbjct 2234 SSIYHLVLFNQVLSSDVMLEDATGILAIYKEVRSYLGIRTLCDGLVVEYRNTS-FDVMEF 2292 Query 2253 CQGY-FPCSVCLSGLDSLDSYPALETIQVTISSYKLDLTFLGLAAEWLLAYMLFTKFFYL 2311 C C CL G DSL Y AL+ +Q I+SY L++ ++ A E+ LAY+L+T F + Sbjct 2293 CSNRSVLCQWCLIGQDSLTRYSALQMLQTHITSYVLNIDWIWFALEFFLAYVLYTSSFNV 2352 Query 2312 LGLSAIMQAFFGYFASHFISNSWLMW-FIIS----IVQMAPVSAMVRMYIFFASFYYVWK 2366 L L Q FF Y S F++ W + +I+S +V P+ +VR+Y F A +++ K Sbjct 2353 LLLVVTAQYFFAY-TSAFVN--WRAYNYIVSGLFFLVTHIPLHGLVRVYNFLACLWFLRK 2409 Query 2367 SYVHIMDGCTSSTCMMCYKRNRATRVECTTIVNGVKRSFYVYANGGRGFCKAHNWNCLNC 2426 Y H+++GC + C++CYKRNR TRVE +TIV G KR+FY+ ANGG +C HNWNC+ C Sbjct 2410 FYSHVINGCKDTACLLCYKRNRLTRVEASTIVCGTKRTFYIAANGGTSYCCKHNWNCVEC 2469 Query 2427 DTFCAGSTFISDEVARDLSLQFKRPINPTDQSAYVVDSVTVKNGALHLYFDKAGQKTYER 2486 DT G+TFI EVA DL+ +R I PTDQS Y VDSV VK+ + L++++ G YER Sbjct 2470 DTAGVGNTFICTEVANDLTTTLRRLIKPTDQSHYYVDSVVVKDAVVELHYNRDGSSCYER 2529 Query 2487 HPLSHFVNLDNLRAN---NTKGSLP-INVIVFDGKSKCEESAAKSASVYYSQLMCQPILL 2542 +PL +F NL+ L+ T +P N +++D + +E+ A+SA VYYSQ++C+P+LL Sbjct 2530 YPLCYFTNLEKLKFKEVCKTPTGIPEHNFLIYDTNDRGQENLARSACVYYSQVLCKPMLL 2589 Query 2543 LDQALVSDVGDSTEVSVKMFDAYVDTFSATFSVPMEKLKALVATAHSELAKGVALDGVLS 2602 +D LV+ VGDS E+++KM D+++++F + FSV +KL+ L+ TA + +G VL Sbjct 2590 VDVNLVTTVGDSREIAIKMLDSFINSFISLFSVSRDKLEKLINTARDCVRRGDDFQNVLK 2649 Query 2603 TFVSAAR-QGVVDTDVDTKDVIECLKLSHHSDIEVTGDSCNNFMLTYNKVENMTPRDLGA 2661 TF AAR V++DV+T V++ L+ +H +DI++T + NN++ Y K +++ DLG Sbjct 2650 TFTDAARGHAGVESDVETTMVVDALQYAHKNDIQLTTECYNNYVPGYIKPDSINTLDLGC 2709 Query 2662 CIDCNARHINAQVAKSHNVSLVWNVKDYMSLSEQLRKQIRSAAKKNNIPFRLTCATTRQV 2721 ID A +N ++ N + VWN DYM LS+ ++QIR A +K NIPFRLT + R Sbjct 2710 LIDLKAASVNQTSMRNANGACVWNSGDYMKLSDSFKRQIRIACRKCNIPFRLTTSKLRAA 2769 Query 2722 VNVITTKISLKGGKVVSTWFKLLLKV-----------TLLCVLAALFCYVIMPVHSLSVH 2770 N+++ K S K+V LL+V TL A+ + +P +S++ Sbjct 2770 DNILSVKFS--ATKIVGGAPSWLLRVRDLTVKGYCILTLFVFTVAVLSWFCLPSYSIATV 2827 Query 2771 DGYTNEIIGYKAIQDGVTRDIVSTDDCFANKHAGFDSWFSQ-RGGSYRNDKNCPVVAAII 2829 + + I+ YK I++G+ RDI D CFANK+ F WF++ GG YRN +CP+ A+I Sbjct 2828 NFNDDRILTYKVIENGIVRDIAPNDVCFANKYGHFSKWFNENHGGVYRNSMDCPITIAVI 2887 Query 2830 TREIGFIVPGLPGTVLRALNGDFLHFLPRVFSAVGNICYTPSKLIEYSDFATSACVLAAE 2889 G V +P L + + F+ RVF A N+C+TP I Y F+ S CVL++E Sbjct 2888 AGVAGARVANVPAN-LAWVGKQIVLFVSRVF-ANTNVCFTPINEIPYDTFSDSGCVLSSE 2945 Query 2890 CTIFKDAMGKPVPYCYDTNLLEGSISYSELRPDTRYVLMDGSI-IQFPNTYLEGSVRVVT 2948 CT+F+DA G P+CYD +L G+ SY++++P RY + D + I+FP +E ++R+ Sbjct 2946 CTLFRDAEGNLNPFCYDPTVLPGASSYADMKPHVRYDMYDSDMYIKFPEVIVESTLRITK 3005 Query 2949 TFDAEYCRHGTCERSEVGVCLSTSGRWVLNNEHYRALPGVFCGVDAMNLIANIFTPLVQP 3008 T +YCR G+CE S GVC+ST+G W L N++Y PG++CG D +++ + L QP Sbjct 3006 TLATQYCRFGSCEESAAGVCISTNGSWALYNQNYSTRPGIYCGDDYFDIVRRLAISLFQP 3065 Query 3009 VGALDVSASVVAGGIIAILVTCAAYYFMKFRRAFGEYNHVVAANALLFLMSFTILCLAPA 3068 V +S S+ G ++ + +T A YY K +RA +Y + L++ LC A Sbjct 3066 VTYFQLSTSLAMGLVLCVFLTAAFYYINKVKRALADYTQCAVVAVVAALLNSLCLCFIVA 3125 Query 3069 YSFLPGVYSIFYLYLTFYFTNDVSFLAHLQWFAMFSPIVPFWITAIYVFCISLKHFHWFF 3128 L Y+ Y Y TFY T + +F+ H+ W+ MF +VP W+ A Y + L+H W Sbjct 3126 NPLLVAPYTAMYYYATFYLTGEPAFIMHISWYVMFGAVVPIWMLASYTVGVMLRHLFWVL 3185 Query 3129 SNYLKKRV--MFNGVTFSTFEEAALCTFLLNKEMYLRLRSETLLPLTQYNRYLALYNKYK 3186 + + KK V +G +F++AA F++ K+ Y+ LR+ + + RYL+L+NKYK Sbjct 3186 AYFSKKHVDVFTDGKLNCSFQDAASNIFVIGKDTYVALRNA--ITQDSFVRYLSLFNKYK 3243 Query 3187 YFSGALDTTSYREAACCHLAKALNDFSNSGADVLYQPPQTSITSAVLQSGFRKMAFPSGK 3246 Y+SGA+DT SYREA HL KAL +S +G+D+LYQPP S+TS+VLQSG KM+ PSG Sbjct 3244 YYSGAMDTASYREACAAHLCKALQTYSETGSDILYQPPNCSVTSSVLQSGLVKMSAPSGA 3303 Query 3247 VEGCMVQVTCGTTTLNGLWLDDTVYCPRHVVCTAEDMLNPNYDDLLIRKSNHSFLVQ--- 3303 VE C+VQVTCG+ TLNGLWLD+TV+CPRH++C A+ + +PNYD LLI K+NHSF+VQ Sbjct 3304 VENCIVQVTCGSMTLNGLWLDNTVWCPRHIMCPADQLTDPNYDALLISKTNHSFIVQKHI 3363 Query 3304 AGNVQLRVIGHSMQNCLLRLKVDTSNPKTPKYKFVRIQPGQTFSVLACYNGSPSGVYQCA 3363 LRV+ HSM LL+L VD +NP TP Y F ++PG +FSVLACYNG P+GV+ Sbjct 3364 GAQANLRVVAHSMVGVLLKLTVDVANPSTPAYTFSTVKPGASFSVLACYNGKPTGVFTVN 3423 Query 3364 MRPNHTIKGSFLNGSCGSVGFNIDYDCVSFCYMHHMELPTGVHAGTDLEGKFYGPFVDRQ 3423 +R N TIKGSFL GSCGSVG+ + ++F YMH MEL G H G+ +G YG F D+Q Sbjct 3424 LRHNSTIKGSFLCGSCGSVGYTENGGVINFVYMHQMELSNGTHTGSSFDGVMYGAFEDKQ 3483 Query 3424 TAQAAGTDTTITLNVLAWLYAAVINGDRWFLNRFTTTLNDFNLVAMKYNY-EPLTQDHVD 3482 T Q TD T+NV+AWLYAAV+NG +WF+ + +N A+ + E + +D Sbjct 3484 THQLQLTDKYCTINVVAWLYAAVLNGCKWFVKPTRVGIVTYNEWALSNQFTEFVGTQSID 3543 Query 3483 ILGPLSAQTGIAVLDMCAALKELLQNGMNGRTILGSTILEDEFTPFDVVRQCSGVTFQGK 3542 +L + +TG++V M AA++ L G G+TILG + LEDEFTP DV Q GV Q Sbjct 3544 ML---AHRTGVSVEQMLAAIQSL-HAGFQGKTILGQSTLEDEFTPDDVNMQVMGVVMQSG 3599 Query 3543 FKKIVKGTHHWMLLTFLTSLLILVQSTQWSLFFFVYEN---AFLPFALGIMAVAACAMLL 3599 K+I G HW++ TF+ + + ++Q T+++++ +++E P LG MA C M Sbjct 3600 VKRISYGFIHWLISTFVLAYVSVMQLTKFTMWTYLFETIPTQMTPLLLGFMA---CVMFT 3656 Query 3600 VKHKHAFLCLFLLPSLATVAYFNMVYMP----ASWVMRIMTWLELADTSLSGYRLKDCVM 3655 VKHKH F+ LFLLP + Y N+VY P +S ++ + WL + D + Sbjct 3657 VKHKHTFMSLFLLPVALCLTYANIVYEPQTLISSTLIAVANWLTPTSVYMRTTHF-DFGL 3715 Query 3656 YASALVLLILMTARTVYDDAARRVWTLMNVITLVYKVYYGNSLDQAISMWALVISVTSNY 3715 Y S +L ++ R + L + + Y G+ I+ + ++TS+Y Sbjct 3716 YISLSFVLAIIVRRLYRPSMSNLALALCSGVMWFYTYVIGDH-SSPITYLMFITTLTSDY 3774 Query 3716 SGVVTTIMFLARAIVFVCVEYYPLLFITGNTLQCIMLVYCFLGYCCCCYFGLFCLLNRYF 3775 + V + LA+ I + Y P L ++ ++L+Y LGY C YFG+F LLN Sbjct 3775 TITVFATVNLAKFISGLVFFYAPHLGFILPEVKLVLLIYLGLGYMCTMYFGVFSLLNLKL 3834 Query 3776 RLTLGVYDYLVSTQEFRYMNSQGLLPPKSSIDAFKLNIKLLGIGGKPCIKVATVQSKMSD 3835 R+ LGVYDY VSTQEFR++ GL P++S +A LN KLLGIGG PCIKVATVQSK++D Sbjct 3835 RVPLGVYDYSVSTQEFRFLTGNGLHAPRNSWEALILNFKLLGIGGTPCIKVATVQSKLTD 3894 Query 3836 VKCTSVVLLSVLQQLRVESSSKLWAQCVQLHNDILLAKDTTEAFEKMVSLLSVLLSMQGA 3895 +KCTSVVLL+VLQQL +ES+SK W+ CV+LHN+IL A D TEAFE+ V L + L+S Sbjct 3895 LKCTSVVLLTVLQQLHLESNSKAWSYCVKLHNEILAAVDPTEAFERFVCLFATLMSFSAN 3954 Query 3896 VDINKLCEEMLDNRATLQAIASEFSSLPSYAAYATAQEAYEQAVSNGD-SEVVLKKLKKS 3954 VD++ L ++ +N + LQA +EFS L +YA TAQ +Y++A+++GD S VLK L+K+ Sbjct 3955 VDLDALANDLFENSSVLQATLTEFSHLATYAELETAQSSYQKALNSGDASPQVLKALQKA 4014 Query 3955 LNVAKSEFDHDAAMQRKLEKMADQAMTQMYKQARSEDKRAKVTSAMQTMLFTMLRKLDND 4014 +NVAK+ ++ D A+ RKLE+MA+QAMT MYKQAR+EDK+AK+ SAMQTMLF M++KLDND Sbjct 4015 VNVAKNAYEKDKAVARKLERMAEQAMTSMYKQARAEDKKAKIVSAMQTMLFGMIKKLDND 4074 Query 4015 ALNNIINNARDGCVPLNIIPLTTAAKLMVVVPDYGTYKNTCDGNTFTYASALWEIQQVVD 4074 LN +I NAR+GCVPL+I+PL + KL VV+PD + + + +YA +LW+I + + Sbjct 4075 VLNGVIANARNGCVPLSIVPLCASNKLRVVIPDISVWNKVVNWPSVSYAGSLWDITVINN 4134 Query 4075 ADSKIVQLSEINMDNSPNLAWPLIVTALR-ANSAVKLQNNELSPVALRQMSCAAGTTQTA 4133 D+++V+ +++ ++ + +L WPL++ R ++SAVKLQNNE+ P L+ M AG Q Sbjct 4135 VDNEVVKPTDV-VETNESLTWPLVIECSRSSSSAVKLQNNEIHPKGLKTMVITAGVDQVN 4193 Query 4134 CTDDNALAYYNNAKGGRFVLALLSDHQDLKWARFPKSDGTGTIYTELEPPCRFVTDTPKG 4193 C + +A+AYY +G R V+ LLS++ LKWA+ D G I EL+PPC+F+ PKG Sbjct 4194 C-NSSAVAYYEPVQGHRMVMGLLSENAHLKWAKVEGKD--GFINIELQPPCKFLIAGPKG 4250 Query 4194 PKVKYLYFIKGLNNLNRGMVLGSLAATVRLQAGNATEVPANSTVLSFCAFAVDPAKAYKD 4253 P+++YLYF+K LNNL+RG +LG +AATVRLQAG TE +NSTVL+ AFAVDPAKAY D Sbjct 4251 PEIRYLYFVKNLNNLHRGQLLGHIAATVRLQAGANTEFASNSTVLTLVAFAVDPAKAYLD 4310 Query 4254 YLASGGQPITNCVKMLCTHTGTGQAITVTPEANMDQESFGGASCCLYCRCHIDHPNPKGF 4313 Y+ SGG P++N VKML TGTG AI+V PEA DQE++GGAS CLYCR HI+HP+ G Sbjct 4311 YVGSGGTPLSNYVKMLAPKTGTGVAISVKPEATADQETYGGASVCLYCRAHIEHPDVSGV 4370 Query 4314 CDLKGKYVQIPTTCANDPVGFTLRNTVCTVCGMWKGYGCSCDQLREPMMQSADASTFLN 4372 C K ++VQIP DPVGF L+N C VC W GYGC+CD LR + + + FLN Sbjct 4371 CKYKTRFVQIPAH-VRDPVGFLLKNVPCNVCQYWVGYGCNCDALRNNTVPQSKDTNFLN 4428 Range 2: 1357 to 2094 Score:305 bits(782), Expect:3e-81, Method:Compositional matrix adjust., Identities:233/758(31%), Positives:363/758(47%), Gaps:57/758(7%) Query 1375 KYKGIKVQEGI--VDYGVRFFFYTSKEPVASIITKLNSLNEPLVTMPIGYVTHGLNLEEA 1432 + KG+ + I VD GV ++ Y++++ + +I N + + MP GYVTHGL+L ++ Sbjct 1357 RTKGVDTTKKIQTVD-GVSYYLYSARDALTDVIAAANGCSG-ICAMPFGYVTHGLDLAQS 1414 Query 1433 ARCMRSLKAPAVVSVSSPDAVTAYNGYLTSSSKTPEEYFVETTSLAGSYRDWSY-SGQRT 1491 +R +K P V ++S + + N + + +TPE F+ + G Y W SG Sbjct 1415 GNYVRQVKVPYVCLLASKEQIPIMNSDV--AIQTPETAFINNVTSNGGYHSWHLVSGDLI 1472 Query 1492 ELGVEFLKRGDKIVYHTTGSPI-----EFHL--DGEVLPLDKL---KSLLSLREVK--TI 1539 V + K + H +G I +F++ + LP L ++ L+ R + I Sbjct 1473 VKDVCYKK-----LLHWSGQTICYADNKFYVVKNDVALPFSDLEACRAYLTSRAAQQVNI 1527 Query 1540 KVFTTVDNTNLHTHIVDMSMTYGQQFGPTYLDGADVTKIKPHVNHEGKTFFVLPSDDTLR 1599 +V T+D N T I++ + T+ +Q G T+ G D++ P V G++ FV +D+ Sbjct 1528 EVLVTIDGVNFRTVILNDTTTFRKQLGATFYKGVDISDAFPTVKMGGESLFV--ADNLSE 1585 Query 1600 SEAF---EYYHTIDESFLGRYMSALNHTKKWKFPQVGGLTSIKWADNNCYLSSVLLALQQ 1656 SE EYY T D +FL RY S ++WKF G+ S+K ++ NCY+++ ++ + Sbjct 1586 SEKVVLKEYYGTSDVTFLQRYYSLQPLVQQWKFVVHDGVKSLKLSNYNCYINATIMMIDM 1645 Query 1657 V-EVKFNAPALQEAYYRARAGDAANFCALILAYSNKTVGELGDVRETMTHLLQHANLE-S 1714 + ++KF PALQ AY R + GD +F ALI+AY + T D + + LL A L S Sbjct 1646 LHDIKFVVPALQNAYLRYKGGDPYDFLALIMAYGDCTFDNPDDEAKLLHTLLAKAELTVS 1705 Query 1715 AKRVLNVVCKHCGQKTTTLKGVEAVMYMGTLSYDELKTGVSIPCVCGRNATQYLVQQESS 1774 AK V C CG + G+ A +Y G S +EL++ + CVCG + LV+ + Sbjct 1706 AKMVWREWCTVCGIRDIEYTGMRACVYAGVNSMEELQSVFNETCVCGSVKHRQLVEHSAP 1765 Query 1775 FVMMSAPPAEYKLQQGA---FLCANEYTG-NYQCGHYTHITAKETL-YRVDGAHLTKMSE 1829 ++++S E K+ + N + G GHY HI K+ L Y+ D LTK S+ Sbjct 1766 WLLVSG-LNEVKVSTSTDPIYRAFNVFQGVETSVGHYVHIRVKDGLFYKYDSGSLTKTSD 1824 Query 1830 YKGPVTDVFYKETSYTTAIKPVSYKLDGVTYTEIEPKLDGYYKKGNAYYTEQP-IDLVPT 1888 K +T V+Y YT V Y LDGVT E+ P L YY K YYT +P I P Sbjct 1825 MKCKMTSVWYPTVRYTADCNVVVYDLDGVTKVEVNPDLSNYYMKDGKYYTSKPTIKYSPA 1884 Query 1889 QPMPNASFDNFKLTCSNTKFADD-----LNQMTGFK--KPASRELTVTFFPDLNGDVVAI 1941 +P + + N L + D N + GF KP S++LT + P+ +GDV+ Sbjct 1885 TILPGSVYSNSCLVGVDGTPGSDTISKFFNDLLGFDETKPISKKLTYSLLPNEDGDVLLS 1944 Query 1942 DYRHYSTSFKKGAKLVHKPILWHINQTTNKTTYKPNIWCLRCLWSTKPVDTSNSFEVLVV 2001 ++ +Y+ +KKG L KPILW N + KPN LR L+ P+ N + VL Sbjct 1945 EFSNYNPVYKKGVMLKGKPILWVNNGVCDSALNKPNRASLRQLYDVAPIVLDNKYTVLQD 2004 Query 2002 EDTQGMDNLACESQTTTSEEVVENPTVQKEIIECDVKTTE---VVGNVILKPSEEGVKVT 2058 +Q E ++V P +++IE K V GN GV V Sbjct 2005 NTSQ-----LVEHNVPVVDDV---PITTRKLIEVKCKGLNKPFVKGNFSFVNDPNGVTVV 2056 Query 2059 QELGHEDLMAAYVE-ETSITIKKPNELSLALGLKTLAT 2095 LG +L A YV+ T + + N S L T+ + Sbjct 2057 DTLGLTELRALYVDINTRYIVLRDNNWSSLFKLHTVES 2094 Range 3: 22 to 957 Score:169 bits(429), Expect:5e-40, Method:Compositional matrix adjust., Identities:244/988(25%), Positives:411/988(41%), Gaps:121/988(12%) Query 9 NEKT--HVQLSLPVLQVRDV---LVRGFGDSVEEALSEAREHLK-NGTCGLVELE-KGVL 61 NEK HV ++P+ D+ L F D E A ++ LK G V + + + Sbjct 22 NEKRSDHVACTVPLCDTDDMACKLTPWFEDG-ETAFNQVSSILKEKGKILFVPMHMQRAM 80 Query 62 PQLEQPYVFIKRSDALSTNHGHKVVELVAELD--GIQFGRSGIT---LGVLVPHVGETPI 116 L P V++ H +V +A D G R+ + LG+ P+ Sbjct 81 KFLPGPRVYLVERLTGGMLSKHFLVNQLAYKDQVGAAMMRTTLNAKPLGMFFPYDSSLET 140 Query 117 AYRNVLLRKNGNKGAGGHSFGIDLKS---YDLGDELGTDPIEDYEQNWNTKHGSGALREL 173 LLRKNG G D K ++ D+L DP Y QN L Sbjct 141 GEYTFLLRKNGLGGQLFRERPWDRKETPYVEILDDLEADPTGKYSQN------------L 188 Query 174 TRELNGGVVTRYVDNNFCGPDGYPLECIKDFLARAGKSMCTLSE-QLDY---IESKRGVY 229 ++L GG +D CG +G P+ +A+ G + TL++ ++D ++S R + Sbjct 189 LKKLIGGDCIP-IDQYMCGKNGKPIADYAKIVAKEG--LTTLADIEVDVKSRMDSDRFI- 244 Query 230 CCREHEHEIVWFTERSEKSYEHQTPFEIKSAKKFDTFKGECPKFVFPLNSKVKVIQP-RV 288 + + +VW R Y QT F I S + D K P+ F + S++ ++ P + Sbjct 245 VLNKKLYRVVWNVTRRNVPYPKQTAFTIVSVVQCDD-KDSVPEHTFTIGSQILMVSPLKA 303 Query 289 EKKKTEGFMGRI-RSVYPVATPQECNDMHLSTLMKCNHCDEVSWQTCDFLKATCEQCGTE 347 K R+ + Y Q+ ++ S + CN C +W T + ++ CG Sbjct 304 TNNKNFNLKQRLLYTFYGKDAVQQPGYIYHSAYVDCNACGRGTWCTGNAIQGFACDCGAN 363 Query 348 NLVCE-GPTTCGYLPTNAVVKMPCPACQDPEVGPEHSVADYHNHSNIETRLRKGGR--TK 404 + + G +P NA+ CP + HS A +N + + + GG+ T Sbjct 364 YSANDVDLQSSGLVPRNALFLANCPCANNGAC--SHSAAQVYNILDGKACVEVGGKSFTL 421 Query 405 CFGGCVFSYVGCYNKRAYWVPRASA---NIG-ANHTGITG---ENVETLNEDLLEILNRE 457 FGG V++Y+GC + Y+VPRA + IG A TG TG + VET N L + Sbjct 422 TFGGVVYAYMGCCDGTMYFVPRAKSCVSRIGDAIFTGCTGTWDKVVETANL----FLEKA 477 Query 458 RVNINIVGDFRFNEEVAIILASFSASPSAFIETVKGLDYKSFKVIVESCGN--YKVTNGK 515 + ++N F E ++LA S + S F E S++ + + N + VT G Sbjct 478 QRSLNFCQQFALTE---VVLAILSGTTSTFEELRDLCHNASYEKVRDHLVNHGFVVTIGD 534 Query 516 PVTGAWNIGQQ----RSILTPLCGFP---------SQAAGVIRSIFSRTLDAANHSILDL 562 + A NIG +I P F S I S LD + +I+ Sbjct 535 YIRDAINIGANGVCNATINAPFIAFTGLGESFKKVSAIPWKICSNLKSALDYYSSNIMFR 594 Query 563 QRAAVTTLDGISEQSLRLVDAMVYTSDLLTNSVVVMAY-------VTGGLVQQTMQWLSN 615 D +S L+D T + S V+ Y V G + LS+ Sbjct 595 VFPYDIPCD-VSNFVELLLDCGKLT---VATSYFVLRYLDEKFDTVLGTVSSACQTALSS 650 Query 616 MLGTAVDKLKPVFTWVEAKLSAGVEFLRDAWEILKFLITGVFDVIKGQIQVATDNIKECV 675 L V ++ +AG F+ D +++ K L+ ++ ++ + V Sbjct 651 FLNACV---------AASRATAG--FINDMFKLFKVLMHKLYVYTSCGYVAVAEHSSKIV 699 Query 676 KIFLGVVNKALEMCLDQVTIAGTKLRAL----------NLGEVFIAQSRGLYRQCIRGKE 725 + L +++KA+++ V+ AGTKL A+ N G F ++ + ++G Sbjct 700 QQVLDIMSKAMKLLHTNVSWAGTKLSAIIYEGREALLFNSGTYFCLSTKA---KTLQG-- 754 Query 726 QLQLLMPLKAPKEVTFL-----EGDAHDTVLTSEEVVLKSGELEALETPIDSFTSGAVVG 780 Q+ L++P K+ + D D S V + G+LE P + +VG Sbjct 755 QMNLVLPGDYNKKTLGILDPVPNADTIDVNANSTVVDVVHGQLE----PTNEHGPSMIVG 810 Query 781 TPVCINGLMLLELENKEQYCALSPGLLATNNVFRLKGGAPVKGVTFGEDTVLEVQGYKNV 840 V ++ + + E++E Y + G + + +FRLKGG P K VTFG+ +EV Y++V Sbjct 811 NYVLVSDKLFVRTEDEEFYPLCTNGKVVST-LFRLKGGMPSKKVTFGDVNTVEVTAYRSV 869 Query 841 KITFELDVRVDKVL-NEKCSVYTVESGTEVTEFACVVAEAVVKTLQPVSDLLTPMGIDLD 899 IT+++ +D +L + K + +TVE V +F V+ + V+ L P+ G D++ Sbjct 870 SITYDIHPVLDALLSSSKLATFTVEKDLLVEDFVDVIKDEVLTLLTPLLRGYDIDGFDVE 929 Query 900 EWSVATFYLFDDAGEEKLSSRMYCSFYP 927 ++ Y+++ G+ SS M S P Sbjct 930 DFIDVPCYVYNQDGDCAWSSNMTFSINP 957 Range 4: 1103 to 1290 Score:137 bits(344), Expect:3e-30, Method:Compositional matrix adjust., Identities:76/188(40%), Positives:103/188(54%), Gaps:8/188(4%) Query 957 LPLEFGASTETPHVEEEEEEEDWLDDAIEAE---PEPEPLPEEPVNQFVGYLK-----LT 1008 LP++ AS H + + + L + E P + P V K + Sbjct 1103 LPIQDEASENQVHQVSDLQGNELLCSETKVEIVQPRQDLKPRRSRKSKVDLSKYKHTVIN 1162 Query 1009 DNVAIKCIDIVKEAQSAKPTVIVNAANTHLKHGGGVAGALNKATNGAMQNESDEYIRQNG 1068 ++V + D ++ A ++VNAAN HLKHGGG+AG +NKA+ G +Q ESDEYI NG Sbjct 1163 NSVTLVLGDAIQIASLLPKCILVNAANRHLKHGGGIAGVINKASGGDVQEESDEYISNNG 1222 Query 1069 PLTVGGSCLLSGHNLAEKCLHVVGPNLNAGEDVQLLKRAYENFNSQDVLLAPLLSAGIFG 1128 PL VG S LL GH LA+ LHVVGP+ ED LLKR Y+ FN +++ PL+SAGIF Sbjct 1223 PLHVGDSVLLKGHGLADAILHVVGPDARNNEDAALLKRCYKAFNKHTIVVTPLISAGIFS 1282 Query 1129 AKPLQSLK 1136 P S + Sbjct 1283 VDPKVSFE 1290 >RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Host translation inhibitor nsp1; Short=nsp1; AltName: Full=Leader protein; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p65 homolog; Contains: RecName: Full=Papain-like proteinase nsp3; Short=PL-PRO; AltName: Full=Non-structural protein 3; Short=nsp3; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; Contains: RecName: Full=3C-like proteinase nsp5; Short=3CL-PRO; Short=3CLp; AltName: Full=nsp5; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; Contains: RecName: Full=Viral protein genome-linked nsp9; AltName: Full=Non-structural protein 9; Short=nsp9; AltName: Full=RNA-capping enzyme subunit nsp9; AltName: Full=p12; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; Contains: RecName: Full=RNA-directed RNA polymerase nsp12; Short=Pol; Short=RdRp; AltName: Full=nsp12; Contains: RecName: Full=Helicase nsp13; Short=Hel; AltName: Full=nsp13; Contains: RecName: Full=Guanine-N7 methyltransferase nsp14; Short=ExoN; AltName: Full=nsp14; Contains: RecName: Full=Uridylate-specific endoribonuclease nsp15; AltName: Full=NendoU; AltName: Full=nsp15; Contains: RecName: Full=2'-O-methyltransferase nsp16; AltName: Full=nsp16 [Bat coronavirus (BtCoV/133/2005)] Sequence ID: P0C6W1.1 Length: 7126 Range 1: 2241 to 4435 Score:1855 bits(4805), Expect:0.0, Method:Compositional matrix adjust., Identities:967/2219(44%), Positives:1383/2219(62%), Gaps:65/2219(2%) Query 2195 SKLFTIVMWLLLLS--ICLGSLTYVTAVLGVCLSSLGVPSYCDGVRELYINSSNVTTMDF 2252 S ++ +V++ +LS + L T + A+ S LG+ + CDG+ Y N+S +DF Sbjct 2241 SSIYHLVIFNQVLSSDVMLEDATGILAMYKEVRSYLGIRTLCDGLAVEYRNTS-FDVVDF 2299 Query 2253 CQGY-FPCSVCLSGLDSLDSYPALETIQVTISSYKLDLTFLGLAAEWLLAYMLFTKFFYL 2311 C C CL G DSL Y AL+ +Q I+SY L++ ++ A E+ LAY+L+T F + Sbjct 2300 CSNRSVLCQWCLIGQDSLTRYSALQMLQTHITSYVLNIDWIWFALEFFLAYVLYTSSFNV 2359 Query 2312 LGLSAIMQAFFGYFASHFISNSWLMW-FIIS----IVQMAPVSAMVRMYIFFASFYYVWK 2366 L L Q FF Y S F++ W + +I+S +V P+ +VR+Y F A +++ K Sbjct 2360 LLLVVTAQYFFAY-TSAFVN--WRAYNYIVSGLFFLVTHIPLHGLVRVYNFLACLWFLRK 2416 Query 2367 SYVHIMDGCTSSTCMMCYKRNRATRVECTTIVNGVKRSFYVYANGGRGFCKAHNWNCLNC 2426 Y H+++GC + C++CYKRNR TRVE +TIV G KR+FY+ ANGG +C HNWNC+ C Sbjct 2417 FYSHVINGCKDTACLLCYKRNRLTRVEASTIVCGTKRTFYIAANGGTSYCCKHNWNCVEC 2476 Query 2427 DTFCAGSTFISDEVARDLSLQFKRPINPTDQSAYVVDSVTVKNGALHLYFDKAGQKTYER 2486 DT G+TFI EVA DL+ +R I PTDQS Y VDSV VK+ + L++++ G YER Sbjct 2477 DTAGVGNTFICTEVANDLTTTLRRLIKPTDQSHYYVDSVVVKDAVVELHYNRDGSSCYER 2536 Query 2487 HPLSHFVNLDNLRAN---NTKGSLP-INVIVFDGKSKCEESAAKSASVYYSQLMCQPILL 2542 +PL +F NL+ L+ T +P N +++D + +E+ A+SA VYYSQ++C+P+LL Sbjct 2537 YPLCYFTNLEKLKFKEVCKTPTGIPEHNFLIYDTNDRGQENLARSACVYYSQVLCKPMLL 2596 Query 2543 LDQALVSDVGDSTEVSVKMFDAYVDTFSATFSVPMEKLKALVATAHSELAKGVALDGVLS 2602 +D LV+ VGDS E+++KM D+++++F + FSV +KL+ L+ TA + +G VL Sbjct 2597 VDVNLVTTVGDSREIAIKMLDSFINSFISLFSVSRDKLEKLINTARDCVRRGDDFQTVLK 2656 Query 2603 TFVSAAR-QGVVDTDVDTKDVIECLKLSHHSDIEVTGDSCNNFMLTYNKVENMTPRDLGA 2661 TF AAR V++DV+T V++ L+ +H +DI++T + NN++ Y K +++ DLG Sbjct 2657 TFTDAARGHAGVESDVETTMVVDALQYAHKNDIQLTTECYNNYVPGYIKPDSINTLDLGC 2716 Query 2662 CIDCNARHINAQVAKSHNVSLVWNVKDYMSLSEQLRKQIRSAAKKNNIPFRLTCATTRQV 2721 ID A +N ++ N + VWN DYM LS+ ++QIR A +K NIPFRLT + R Sbjct 2717 LIDLKAASVNQTSMRNANGACVWNSGDYMKLSDSFKRQIRIACRKCNIPFRLTTSKLRAA 2776 Query 2722 VNVITTKISLKGGKVVSTWFKLLLKV-----------TLLCVLAALFCYVIMPVHSLSVH 2770 N+++ K S K+V LL+V TL A+ + +P +S++ Sbjct 2777 DNILSVKFS--ATKIVGGAPSWLLRVRDLTVKGYCILTLFVFTVAVLSWFCLPSYSIATV 2834 Query 2771 DGYTNEIIGYKAIQDGVTRDIVSTDDCFANKHAGFDSWFSQ-RGGSYRNDKNCPVVAAII 2829 + + I+ YK I++G+ RDI D CFANK+ F WF++ GG YRN +CP+ A+I Sbjct 2835 NFNDDRILTYKVIENGIVRDIAPNDACFANKYGHFSKWFNENHGGVYRNSVDCPITIAVI 2894 Query 2830 TREIGFIVPGLPGTVLRALNGDFLHFLPRVFSAVGNICYTPSKLIEYSDFATSACVLAAE 2889 G V +P T L + + F+ RVF A N+C+TP+ I Y F+ S CVL++E Sbjct 2895 AGVAGARVANVPAT-LAWVGRQIVLFVSRVF-ANTNVCFTPTNEIPYDTFSDSGCVLSSE 2952 Query 2890 CTIFKDAMGKPVPYCYDTNLLEGSISYSELRPDTRYVLMDGSI-IQFPNTYLEGSVRVVT 2948 CT+F+DA G P+CYD +L G+ SY++++P RY + D + I+FP E ++R+ Sbjct 2953 CTLFRDAEGNLNPFCYDPTVLPGASSYADMKPHVRYDMYDSDMYIKFPEVIFESTLRITK 3012 Query 2949 TFDAEYCRHGTCERSEVGVCLSTSGRWVLNNEHYRALPGVFCGVDAMNLIANIFTPLVQP 3008 T +YCR G+CE S GVC+ST+G W L N++Y PG++CG D +++ + L QP Sbjct 3013 TLATQYCRFGSCEESAAGVCISTNGSWALYNQNYSTRPGIYCGDDYFDIVRRLAVSLFQP 3072 Query 3009 VGALDVSASVVAGGIIAILVTCAAYYFMKFRRAFGEYNHVVAANALLFLMSFTILCLAPA 3068 V +S S+ G ++ + +T A YY K +RA +Y + L++ LC A Sbjct 3073 VTYFQLSTSLAMGLVLCVFLTAAFYYINKVKRALADYTQCAVVAVVAALLNSLCLCFIVA 3132 Query 3069 YSFLPGVYSIFYLYLTFYFTNDVSFLAHLQWFAMFSPIVPFWITAIYVFCISLKHFHWFF 3128 L Y+ Y Y TFY T + +F+ H+ W+ MF +VP W+ A Y + L+H W Sbjct 3133 NPLLVAPYTAMYYYATFYLTGEPAFIMHISWYVMFGTVVPIWMLASYTVGVMLRHLFWVL 3192 Query 3129 SNYLKKRV--MFNGVTFSTFEEAALCTFLLNKEMYLRLRSETLLPLTQYNRYLALYNKYK 3186 + + KK V +G +F++AA F++ K+ Y+ LR+ + + RYL+L+NKYK Sbjct 3193 AYFSKKHVDVFTDGKLNCSFQDAASNIFVIGKDTYVALRNA--ITQDSFVRYLSLFNKYK 3250 Query 3187 YFSGALDTTSYREAACCHLAKALNDFSNSGADVLYQPPQTSITSAVLQSGFRKMAFPSGK 3246 Y+SGA+DT SYREA HL KAL +S +G+D+LYQPP S+TS+VLQSG KM+ PSG Sbjct 3251 YYSGAMDTASYREACAAHLCKALQTYSETGSDILYQPPNCSVTSSVLQSGLVKMSAPSGA 3310 Query 3247 VEGCMVQVTCGTTTLNGLWLDDTVYCPRHVVCTAEDMLNPNYDDLLIRKSNHSFLVQ--- 3303 VE C+VQVTCG+ TLNGLWLD+TV+CPRH++C A+ + +PNYD LLI K+NHSF+VQ Sbjct 3311 VENCIVQVTCGSMTLNGLWLDNTVWCPRHIMCPADQLTDPNYDALLISKTNHSFIVQKHI 3370 Query 3304 AGNVQLRVIGHSMQNCLLRLKVDTSNPKTPKYKFVRIQPGQTFSVLACYNGSPSGVYQCA 3363 LRV+ HSM LL+L VD +NP TP Y F ++PG +FSVLACYNG P+GV+ Sbjct 3371 GAQANLRVVAHSMVGVLLKLTVDVANPSTPAYTFSTVKPGASFSVLACYNGKPTGVFTVN 3430 Query 3364 MRPNHTIKGSFLNGSCGSVGFNIDYDCVSFCYMHHMELPTGVHAGTDLEGKFYGPFVDRQ 3423 +R N TIKGSFL GSCGSVG+ + ++F YMH MEL G H G+ +G YG F D+Q Sbjct 3431 LRHNSTIKGSFLCGSCGSVGYTENGGVLNFVYMHQMELSNGTHTGSSFDGVMYGAFEDKQ 3490 Query 3424 TAQAAGTDTTITLNVLAWLYAAVINGDRWFLNRFTTTLNDFNLVAMKYNY-EPLTQDHVD 3482 T Q TD T+NV+AWLYAAV+NG +WF+ + +N A+ + E + +D Sbjct 3491 THQLQLTDKYCTINVVAWLYAAVLNGCKWFVKPTRVGIVTYNEWALSNQFTEFVGTQSID 3550 Query 3483 ILGPLSAQTGIAVLDMCAALKELLQNGMNGRTILGSTILEDEFTPFDVVRQCSGVTFQGK 3542 +L + +TG++V M AA++ L G G+TILG + LEDEFTP DV Q GV Q Sbjct 3551 ML---AHRTGVSVEQMLAAIQSL-HAGFQGKTILGQSTLEDEFTPDDVNMQVMGVVMQSG 3606 Query 3543 FKKIVKGTHHWMLLTFL---TSLLILVQSTQWSLFFFVYENAFLPFALGIMAVAACAMLL 3599 K+I G HW++ T + S++ L + T W+ F P G MA C M Sbjct 3607 VKRISYGFMHWLMSTLVLAYVSVMQLTKFTMWTYLFETIPTQMTPLLFGFMA---CVMFT 3663 Query 3600 VKHKHAFLCLFLLPSLATVAYFNMVYMP----ASWVMRIMTWLELADTSLSGYRLKDCVM 3655 VKHKH FL LFLLP + Y N+VY P +S ++ + WL + L D + Sbjct 3664 VKHKHTFLSLFLLPVALCLTYANIVYEPQTLVSSTLIAVANWLTPTSVYMRTTHL-DFGL 3722 Query 3656 YASALVLLILMTARTVYDDAARRVWTLMNVITLVYKVYYGNSLDQAISMWALVISVTSNY 3715 Y S +L ++ R + L + + Y G+ I+ + ++TS+Y Sbjct 3723 YISLSFVLAIIVRRLYRPSMSNLALALCSGVMWFYTYVIGDH-SSPITYLMFITTLTSDY 3781 Query 3716 SGVVTTIMFLARAIVFVCVEYYPLLFITGNTLQCIMLVYCFLGYCCCCYFGLFCLLNRYF 3775 + V + LA+ I + Y P L ++ ++L+Y LGY C YFG+F LLN Sbjct 3782 TITVFATVNLAKFISGLVFLYAPHLGFILPEVKLVLLIYLCLGYMCTMYFGVFSLLNLKL 3841 Query 3776 RLTLGVYDYLVSTQEFRYMNSQGLLPPKSSIDAFKLNIKLLGIGGKPCIKVATVQSKMSD 3835 R+ LGVYDY VSTQEFR++ GL P++S +A LN KLLGIGG PCIKVATVQSK++D Sbjct 3842 RVPLGVYDYSVSTQEFRFLTGNGLHAPRNSWEALILNFKLLGIGGTPCIKVATVQSKLTD 3901 Query 3836 VKCTSVVLLSVLQQLRVESSSKLWAQCVQLHNDILLAKDTTEAFEKMVSLLSVLLSMQGA 3895 +KCTSVVLL+VLQQL +ES+SK W+ CV+LHN+IL A D TEAFE+ V L + L+S Sbjct 3902 LKCTSVVLLTVLQQLHLESNSKAWSYCVKLHNEILAAVDPTEAFERFVCLFATLMSFSAN 3961 Query 3896 VDINKLCEEMLDNRATLQAIASEFSSLPSYAAYATAQEAYEQAVSNGD-SEVVLKKLKKS 3954 VD++ L ++ +N + LQA +EFS L +YA TAQ +Y++A+++GD S VLK L+K+ Sbjct 3962 VDLDALANDLFENSSVLQATLTEFSHLATYAELETAQSSYQKALNSGDASPQVLKALQKA 4021 Query 3955 LNVAKSEFDHDAAMQRKLEKMADQAMTQMYKQARSEDKRAKVTSAMQTMLFTMLRKLDND 4014 +NVAK+ ++ D A+ RKLE+MA+QAMT MYKQAR+EDK+AK+ SAMQTMLF M++KLDND Sbjct 4022 VNVAKNAYEKDKAVARKLERMAEQAMTSMYKQARAEDKKAKIVSAMQTMLFGMIKKLDND 4081 Query 4015 ALNNIINNARDGCVPLNIIPLTTAAKLMVVVPDYGTYKNTCDGNTFTYASALWEIQQVVD 4074 LN +I NAR+GCVPL+I+PL + KL VV+PD + + + +YA +LW++ + + Sbjct 4082 VLNGVIANARNGCVPLSIVPLCASNKLRVVIPDISVWNKVVNWPSVSYAGSLWDVTVINN 4141 Query 4075 ADSKIVQLSEINMDNSPNLAWPLIVTALRA-NSAVKLQNNELSPVALRQMSCAAGTTQTA 4133 D+++V+ +++ ++ + +L WPL++ RA +SAVKLQNNE+ P L+ M AG Q Sbjct 4142 VDNEVVKPTDV-VETNESLTWPLVIECSRASSSAVKLQNNEIHPKGLKTMVVTAGIDQVN 4200 Query 4134 CTDDNALAYYNNAKGGRFVLALLSDHQDLKWARFPKSDGTGTIYTELEPPCRFVTDTPKG 4193 C+ +A+AYY +G R V+ LLS++ LKWA+ D G I EL+PPC+F+ PKG Sbjct 4201 CS-SSAVAYYEPVQGHRMVMGLLSENAHLKWAKVEGKD--GFINIELQPPCKFLIAGPKG 4257 Query 4194 PKVKYLYFIKGLNNLNRGMVLGSLAATVRLQAGNATEVPANSTVLSFCAFAVDPAKAYKD 4253 P+++YLYF+K LNNL+RG +LG +AATVRLQAG TE +NSTVL+ AFAVDPAKAY D Sbjct 4258 PEIRYLYFVKNLNNLHRGQLLGHIAATVRLQAGANTEFASNSTVLTLVAFAVDPAKAYLD 4317 Query 4254 YLASGGQPITNCVKMLCTHTGTGQAITVTPEANMDQESFGGASCCLYCRCHIDHPNPKGF 4313 Y+ SGG P++N VKML TGTG AI+V PEA DQE++GGAS CLYCR HI+HP+ G Sbjct 4318 YVGSGGTPLSNYVKMLAPKTGTGVAISVKPEATADQETYGGASVCLYCRAHIEHPDVSGV 4377 Query 4314 CDLKGKYVQIPTTCANDPVGFTLRNTVCTVCGMWKGYGCSCDQLREPMMQSADASTFLN 4372 C K ++VQIP DPVGF L+N C VC W GYGC+CD LR + + + FLN Sbjct 4378 CKYKTRFVQIPAH-VRDPVGFLLKNVPCNVCQYWVGYGCNCDALRNNTVPQSKDTNFLN 4435 Range 2: 1364 to 2101 Score:304 bits(778), Expect:1e-80, Method:Compositional matrix adjust., Identities:232/759(31%), Positives:367/759(48%), Gaps:59/759(7%) Query 1375 KYKGIKVQEGI--VDYGVRFFFYTSKEPVASIITKLNSLNEPLVTMPIGYVTHGLNLEEA 1432 + KG+ + I VD GV ++ Y++++ + +I N + MP GYVTHGL+L ++ Sbjct 1364 RTKGVDTTKKIQTVD-GVSYYLYSARDALTDVIAAANGC-PGICAMPFGYVTHGLDLAQS 1421 Query 1433 ARCMRSLKAPAVVSVSSPDAVTAYNGYLTSSSKTPEEYFVETTSLAGSYRDWSY-SGQRT 1491 +R +K P V ++S + + N + + +TPE F+ + G Y W SG Sbjct 1422 GNYVRQVKVPYVCLLASKEQIPIMNSDV--AIQTPETAFINNVTSNGGYHSWHLVSGDLI 1479 Query 1492 ELGVEFLKRGDKIVYHTTGSPI-----EFHL--DGEVLPLDKL---KSLLSLREVK--TI 1539 V + K + H +G I +F++ + LP L ++ L+ R + I Sbjct 1480 VKDVCYKK-----LLHWSGQTICYADNKFYVVKNDVALPFSDLEACRAYLTSRAAQQVNI 1534 Query 1540 KVFTTVDNTNLHTHIVDMSMTYGQQFGPTYLDGADVTKIKPHVNHEGKTFFVLPSDDTLR 1599 +V T+D N T I++ + T+ +Q G T+ G D++ P V G++ FV +D+ Sbjct 1535 EVLVTIDGVNFRTVILNDATTFRKQLGATFYKGVDISDALPTVKMGGESLFV--ADNLSE 1592 Query 1600 SEAF---EYYHTIDESFLGRYMSALNHTKKWKFPQVGGLTSIKWADNNCYLSSVLLALQQ 1656 SE EYY T D +FL RY S ++WKF G+ S+K ++ NCY+++ ++ + Sbjct 1593 SEEVVLKEYYGTSDVTFLQRYYSLQPLVQQWKFVVHDGVKSLKLSNYNCYINATIMMIDM 1652 Query 1657 V-EVKFNAPALQEAYYRARAGDAANFCALILAYSNKTVGELGDVRETMTHLLQHANLE-S 1714 + ++KF PALQ AY R + GD +F ALI+AY + T D + + LL A L S Sbjct 1653 LHDIKFVVPALQNAYLRYKGGDPYDFLALIMAYGDCTFDNPDDEAKLLHTLLAKAELTVS 1712 Query 1715 AKRVLNVVCKHCGQKTTTLKGVEAVMYMGTLSYDELKTGVSIPCVCGRNATQYLVQQESS 1774 AK V C CG + G+ A +Y G S +EL++ + CVCG + LV+ + Sbjct 1713 AKMVWREWCTVCGIRDIEYTGMRACVYAGVNSMEELQSVFNETCVCGSVKHRQLVEHSTP 1772 Query 1775 FVMMSAPPAEYKLQQG---AFLCANEYTG-NYQCGHYTHITAKETL-YRVDGAHLTKMSE 1829 ++++S E K+ + N + G GHY H+ K+ L Y+ D LTK S+ Sbjct 1773 WLLVSG-LNEVKVSTSTDPVYRAFNVFQGVETSVGHYVHVRVKDGLFYKYDSGSLTKTSD 1831 Query 1830 YKGPVTDVFYKETSYTTAIKPVSYKLDGVTYTEIEPKLDGYYKKGNAYYTEQP-IDLVPT 1888 K +T V+Y + YT V Y LDGVT E+ P L YY K YYT +P I P Sbjct 1832 MKCKMTSVWYPKVRYTADCNVVVYDLDGVTKVEVNPDLSNYYMKDGKYYTSKPTIKYSPA 1891 Query 1889 QPMPNASFDNFKLTCSNTKFADD-----LNQMTGFK--KPASRELTVTFFPDLNGDVVAI 1941 +P + + N L + D N + GF KP S++LT + P+ +GDV+ Sbjct 1892 TILPGSVYSNSCLVGVDGTPGSDTISKFFNDLLGFDETKPISKKLTYSLLPNEDGDVLLS 1951 Query 1942 DYRHYSTSFKKGAKLVHKPILWHINQTTNKTTYKPNIWCLRCLWSTKPVDTSNSFEVLVV 2001 ++ +Y+ +KKG L KPILW N + KPN LR L+ P+ N + VL Sbjct 1952 EFNNYNPVYKKGVMLKGKPILWVNNGVCDSALNKPNRASLRQLYDVAPIVLDNKYTVLQD 2011 Query 2002 EDTQGMDNLACESQTTTSEEVVENPTV-QKEIIECDVKTTE---VVGNVILKPSEEGVKV 2057 +Q ++ + VVE+ ++ +++IE K V GN GV V Sbjct 2012 NTSQLIE---------PNVPVVEDVSITTRKLIEVKCKGLNKPFVKGNFSFVNDPNGVTV 2062 Query 2058 TQELGHEDLMAAYVE-ETSITIKKPNELSLALGLKTLAT 2095 LG +L A YV+ T + + N S L T+ + Sbjct 2063 VDTLGLTELRALYVDINTRYIVLRDNNWSSLFKLHTVES 2101 Range 3: 22 to 957 Score:168 bits(425), Expect:1e-39, Method:Compositional matrix adjust., Identities:236/979(24%), Positives:405/979(41%), Gaps:103/979(10%) Query 9 NEKT--HVQLSLPVLQVRDV---LVRGFGDSVEEALSEAREHLK-NGTCGLVELE-KGVL 61 NEK HV ++P+ D+ L F D E A ++ LK G V + + + Sbjct 22 NEKRSDHVACTVPLCDTEDMASKLTPWFEDG-ETAFNQVSSILKEKGKILFVPMHMQRAM 80 Query 62 PQLEQPYVFIKRSDALSTNHGHKVVELVAELD--GIQFGRSGIT---LGVLVPHVGETPI 116 L P V++ H +V +A D G R+ + LG+ P+ Sbjct 81 KFLPGPRVYLVERLTGGMLSKHFLVNQLAYKDHVGAAMMRTTLNVKPLGMFFPYDSSLET 140 Query 117 AYRNVLLRKNGNKGAGGHSFGIDLKS---YDLGDELGTDPIEDYEQNWNTKHGSGALREL 173 LLRKNG G D K ++ D+L DP Y QN L Sbjct 141 GEHTFLLRKNGLGGQLFRERPWDRKETPYVEILDDLEADPTGKYSQN------------L 188 Query 174 TRELNGGVVTRYVDNNFCGPDGYPLECIKDFLARAGKSMCTLSE-QLDY---IESKRGVY 229 ++L GG VD CG +G P+ +A+ G + TL++ ++D ++S R + Sbjct 189 LKKLIGGDCIP-VDQYMCGKNGKPIADYAKIVAKEG--LTTLADIEVDVKSRMDSDRFI- 244 Query 230 CCREHEHEIVWFTERSEKSYEHQTPFEIKSAKKFDTFKGECPKFVFPLNSKVKVIQP-RV 288 + + +VW R Y QT F + S + D K P+ F + S++ ++ P + Sbjct 245 VLNKKLYRVVWNVTRRNVPYSKQTAFTVVSVIQCDD-KESVPEHTFTIGSQILMVSPLKA 303 Query 289 EKKKTEGFMGRI-RSVYPVATPQECNDMHLSTLMKCNHCDEVSWQTCDFLKATCEQCGTE 347 K R+ + Y Q+ ++ S + CN C +W T + ++ CG Sbjct 304 TNNKNFNLKQRLLHTFYGKEAVQQPGYIYHSAYVDCNACGRGTWCTGNAIQGFACDCGAN 363 Query 348 NLVCE-GPTTCGYLPTNAVVKMPCPACQDPEVGPEHSVADYHNHSNIETRLRKGGR--TK 404 + + G +P NA+ CP + H+ A ++ + + + GG+ T Sbjct 364 YSANDVDLQSSGLVPKNALFLANCPCANNGAC--SHNAAQVYSILDGKACVEVGGKSFTL 421 Query 405 CFGGCVFSYVGCYNKRAYWVPRASA---NIG-ANHTGITG---ENVETLNEDLLEILNRE 457 FGG V++Y+GC + Y+VPRA + IG A TG TG + VET N L + Sbjct 422 TFGGVVYAYMGCCDGTMYFVPRAKSCVSRIGDAIFTGCTGTWDKVVETANL----FLEKA 477 Query 458 RVNINIVGDFRFNEEVAIILASFSASPSAFIETVKGLDYKSFKVIVESCGN--YKVTNGK 515 + ++N F E ++LA S + S F E S++ + + N + VT G Sbjct 478 QHSLNFCQQFALTE---VVLAILSGTTSTFEELRDLCHNASYEKVRDHLVNHGFVVTIGD 534 Query 516 PVTGAWNIGQQ----RSILTPLCGFPS------QAAGVIRSIFSRTLDAANHSILDLQRA 565 + A NIG +I P F + A + I S A ++ ++ Sbjct 535 YIRDAINIGANGVCNATINAPFIAFTGLGESFKKVAAIPWKICSNLKSALDYYCSNIMFR 594 Query 566 AVTTLDGISEQSLRLVDAMVYTSDL-LTNSVVVMAYVTGGLVQQTMQWLSNMLGTAVDKL 624 I V+ ++ L + S V+ Y+ + +SN TA L Sbjct 595 VFPY--DIPCDVNDFVELLLDCGKLTVATSYFVLRYLDEKF-DTVLGTVSNACQTA---L 648 Query 625 KPVFTWVEAKLSAGVEFLRDAWEILKFLITGVFDVIKGQIQVATDNIKECVKIFLGVVNK 684 A A F+ D +++ K L+ ++ ++ + V+ L +++K Sbjct 649 SSFLNACVAASRATAGFISDMFKLFKVLMHKLYVYTSCGYVAVAEHSSKIVQQVLDIMSK 708 Query 685 ALEMCLDQVTIAGTKLRAL----------NLGEVFIAQSRGLYRQCIRGKEQLQLLMPLK 734 A+++ V+ AGTKL A+ N G F ++ Q +Q+ L++P Sbjct 709 AMKLLHTNVSWAGTKLSAIIYEGREALLFNSGTYFCLSTKAKTLQ-----DQMNLVLPGD 763 Query 735 APKEVTFL-----EGDAHDTVLTSEEVVLKSGELEALETPIDSFTSGAVVGTPVCINGLM 789 K+ + D D S V + G+LE P + +VG V ++ + Sbjct 764 YNKKTLGILDPVPNADTIDVTANSTVVDVVHGQLE----PTNEHGPSMIVGNYVLVSDKL 819 Query 790 LLELENKEQYCALSPGLLATNNVFRLKGGAPVKGVTFGEDTVLEVQGYKNVKITFELDVR 849 + +++E Y G + + +FRLKGG P K VTFG+ +EV Y++V IT+++ Sbjct 820 FVRTDDEEFYPLCINGKVVST-LFRLKGGMPSKKVTFGDVNTVEVTAYRSVSITYDIHPV 878 Query 850 VDKVL-NEKCSVYTVESGTEVTEFACVVAEAVVKTLQPVSDLLTPMGIDLDEWSVATFYL 908 +D +L + K + +TVE V +F V+ + V+ L P+ G D++++ Y+ Sbjct 879 LDALLSSSKLATFTVEKDLLVEDFVDVIKDEVLTLLTPLLRGYDIDGFDVEDFIDVPCYV 938 Query 909 FDDAGEEKLSSRMYCSFYP 927 ++ G+ SS M S P Sbjct 939 YNQDGDCAWSSNMTFSINP 957 Range 4: 1168 to 1297 Score:130 bits(328), Expect:3e-28, Method:Compositional matrix adjust., Identities:63/130(48%), Positives:85/130(65%), Gaps:0/130(0%) Query 1007 LTDNVAIKCIDIVKEAQSAKPTVIVNAANTHLKHGGGVAGALNKATNGAMQNESDEYIRQ 1066 + ++V + D ++ A V+VNAAN HLKHGGG+AGA+NKA+ G +Q ESDEYI Sbjct 1168 INNSVTLVLGDAIQIASLLPKCVLVNAANRHLKHGGGIAGAINKASGGDVQEESDEYISN 1227 Query 1067 NGPLTVGGSCLLSGHNLAEKCLHVVGPNLNAGEDVQLLKRAYENFNSQDVLLAPLLSAGI 1126 +GPL VG S LL G+ LA+ L VVGP+ ED LLKR Y+ FN +++ PL+S+GI Sbjct 1228 SGPLHVGDSVLLKGYGLADAILRVVGPDARNNEDAALLKRCYKTFNKHTIVVTPLISSGI 1287 Query 1127 FGAKPLQSLK 1136 F P S + Sbjct 1288 FSVDPKVSFE 1297 >RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Host translation inhibitor nsp1; Short=nsp1; AltName: Full=Leader protein; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p65 homolog; Contains: RecName: Full=Papain-like proteinase nsp3; Short=PL-PRO; AltName: Full=Non-structural protein 3; Short=nsp3; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; Contains: RecName: Full=3C-like proteinase nsp5; Short=3CL-PRO; Short=3CLp; AltName: Full=nsp5; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; Contains: RecName: Full=Viral protein genome-linked nsp9; AltName: Full=Non-structural protein 9; Short=nsp9; AltName: Full=RNA-capping enzyme subunit nsp9; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; Contains: RecName: Full=RNA-directed RNA polymerase nsp12; Short=Pol; Short=RdRp; Contains: RecName: Full=Helicase nsp13; Short=Hel; AltName: Full=nsp13; Contains: RecName: Full=Guanine-N7 methyltransferase nsp14; Short=ExoN; AltName: Full=nsp14; Contains: RecName: Full=Uridylate-specific endoribonuclease nsp15; AltName: Full=NendoU; AltName: Full=nsp15; Contains: RecName: Full=2'-O-methyltransferase nsp16; AltName: Full=nsp16 [Tylonycteris bat coronavirus HKU4] Sequence ID: P0C6W3.1 Length: 7119 Range 1: 2234 to 4428 Score:1854 bits(4802), Expect:0.0, Method:Compositional matrix adjust., Identities:966/2219(44%), Positives:1383/2219(62%), Gaps:65/2219(2%) Query 2195 SKLFTIVMWLLLLS--ICLGSLTYVTAVLGVCLSSLGVPSYCDGVRELYINSSNVTTMDF 2252 S ++ +V++ +LS + L T + A+ S LG+ + CDG+ Y N+S M+F Sbjct 2234 SSIYHLVLFNQVLSSDVMLEDATGILAIYKEVRSYLGIRTLCDGLVVEYRNTS-FDVMEF 2292 Query 2253 CQGY-FPCSVCLSGLDSLDSYPALETIQVTISSYKLDLTFLGLAAEWLLAYMLFTKFFYL 2311 C C CL G DSL Y AL+ +Q I+SY L++ ++ A E+ LAY+L+T F + Sbjct 2293 CSNRSVLCQWCLIGQDSLTRYSALQMLQTHITSYVLNIDWIWFALEFFLAYVLYTSSFNV 2352 Query 2312 LGLSAIMQAFFGYFASHFISNSWLMW-FIIS----IVQMAPVSAMVRMYIFFASFYYVWK 2366 L L Q FF Y S F++ W + +I+S +V P+ +VR+Y F A +++ K Sbjct 2353 LLLVVTAQYFFAY-TSAFVN--WRAYNYIVSGLFFLVTHIPLHGLVRVYNFLACLWFLRK 2409 Query 2367 SYVHIMDGCTSSTCMMCYKRNRATRVECTTIVNGVKRSFYVYANGGRGFCKAHNWNCLNC 2426 Y H+++GC + C++CYKRNR TRVE +TIV G KR+FY+ ANGG +C HNWNC+ C Sbjct 2410 FYSHVINGCKDTACLLCYKRNRLTRVEASTIVCGTKRTFYIAANGGTSYCCKHNWNCVEC 2469 Query 2427 DTFCAGSTFISDEVARDLSLQFKRPINPTDQSAYVVDSVTVKNGALHLYFDKAGQKTYER 2486 DT G+TFI EVA DL+ +R I PTDQS Y VDSV VK+ + L++++ G YER Sbjct 2470 DTAGVGNTFICTEVANDLTTTLRRLIKPTDQSHYYVDSVVVKDAVVELHYNRDGSSCYER 2529 Query 2487 HPLSHFVNLDNLRAN---NTKGSLP-INVIVFDGKSKCEESAAKSASVYYSQLMCQPILL 2542 +PL +F NL+ L+ T +P N +++D + +E+ A+SA VYYSQ++C+P+LL Sbjct 2530 YPLCYFTNLEKLKFKEVCKTPTGIPEHNFLIYDTNDRGQENLARSACVYYSQVLCKPMLL 2589 Query 2543 LDQALVSDVGDSTEVSVKMFDAYVDTFSATFSVPMEKLKALVATAHSELAKGVALDGVLS 2602 +D LV+ VGDS E+++KM D+++++F + FSV +KL+ L+ TA + +G VL Sbjct 2590 VDVNLVTTVGDSREIAIKMLDSFINSFISLFSVSRDKLEKLINTARDCVRRGDDFQNVLK 2649 Query 2603 TFVSAAR-QGVVDTDVDTKDVIECLKLSHHSDIEVTGDSCNNFMLTYNKVENMTPRDLGA 2661 TF AAR V++DV+T V++ L+ +H +DI++T + NN++ Y K +++ DLG Sbjct 2650 TFTDAARGHAGVESDVETTMVVDALQYAHKNDIQLTTECYNNYVPGYIKPDSINTLDLGC 2709 Query 2662 CIDCNARHINAQVAKSHNVSLVWNVKDYMSLSEQLRKQIRSAAKKNNIPFRLTCATTRQV 2721 ID A +N ++ N + VWN DYM LS+ ++QIR A +K NIPFRLT + R Sbjct 2710 LIDLKAASVNQTSMRNANGACVWNSGDYMKLSDSFKRQIRIACRKCNIPFRLTTSKLRAA 2769 Query 2722 VNVITTKISLKGGKVVSTWFKLLLKV-----------TLLCVLAALFCYVIMPVHSLSVH 2770 N+++ K S K+V LL+V TL A+ + +P +S++ Sbjct 2770 DNILSVKFS--ATKIVGGAPSWLLRVRDLTVKGYCILTLFVFTVAVLSWFCLPSYSIATV 2827 Query 2771 DGYTNEIIGYKAIQDGVTRDIVSTDDCFANKHAGFDSWFSQ-RGGSYRNDKNCPVVAAII 2829 + + I+ YK I++G+ RDI D CFANK+ F WF++ GG YRN +CP+ A+I Sbjct 2828 NFNDDRILTYKVIENGIVRDIAPNDVCFANKYGHFSKWFNENHGGVYRNSMDCPITIAVI 2887 Query 2830 TREIGFIVPGLPGTVLRALNGDFLHFLPRVFSAVGNICYTPSKLIEYSDFATSACVLAAE 2889 G V +P L + + F+ RVF A N+C+TP I Y F+ S CVL++E Sbjct 2888 AGVAGARVANVPAN-LAWVGKQIVLFVSRVF-ANTNVCFTPINEIPYDTFSDSGCVLSSE 2945 Query 2890 CTIFKDAMGKPVPYCYDTNLLEGSISYSELRPDTRYVLMDGSI-IQFPNTYLEGSVRVVT 2948 CT+F+DA G P+CYD +L G+ SY++++P RY + D + I+FP +E ++R+ Sbjct 2946 CTLFRDAEGNLNPFCYDPTVLPGASSYADMKPHVRYDMYDSDMYIKFPEVIVESTLRITK 3005 Query 2949 TFDAEYCRHGTCERSEVGVCLSTSGRWVLNNEHYRALPGVFCGVDAMNLIANIFTPLVQP 3008 T +YCR G+CE S GVC+ST+G W L N++Y PG++CG D +++ + L QP Sbjct 3006 TLATQYCRFGSCEESAAGVCISTNGSWALYNQNYSTRPGIYCGDDYFDIVRRLAISLFQP 3065 Query 3009 VGALDVSASVVAGGIIAILVTCAAYYFMKFRRAFGEYNHVVAANALLFLMSFTILCLAPA 3068 V +S S+ G ++ + +T A YY K +RA +Y + L++ LC A Sbjct 3066 VTYFQLSTSLAMGLVLCVFLTAAFYYINKVKRALADYTQCAVVAVVAALLNSLCLCFIVA 3125 Query 3069 YSFLPGVYSIFYLYLTFYFTNDVSFLAHLQWFAMFSPIVPFWITAIYVFCISLKHFHWFF 3128 L Y+ Y Y TFY T + +F+ H+ W+ MF +VP W+ A Y + L+H W Sbjct 3126 NPLLVAPYTAMYYYATFYLTGEPAFIMHISWYVMFGAVVPIWMLASYTVGVMLRHLFWVL 3185 Query 3129 SNYLKKRV--MFNGVTFSTFEEAALCTFLLNKEMYLRLRSETLLPLTQYNRYLALYNKYK 3186 + + KK V +G +F++AA F++ K+ Y+ LR+ + + RYL+L+NKYK Sbjct 3186 AYFSKKHVDVFTDGKLNCSFQDAASNIFVIGKDTYVALRNA--ITQDSFVRYLSLFNKYK 3243 Query 3187 YFSGALDTTSYREAACCHLAKALNDFSNSGADVLYQPPQTSITSAVLQSGFRKMAFPSGK 3246 Y+SGA+DT SYREA HL KAL +S +G+D+LYQPP S+TS+VLQSG KM+ PSG Sbjct 3244 YYSGAMDTASYREACAAHLCKALQTYSETGSDILYQPPNCSVTSSVLQSGLVKMSAPSGA 3303 Query 3247 VEGCMVQVTCGTTTLNGLWLDDTVYCPRHVVCTAEDMLNPNYDDLLIRKSNHSFLVQ--- 3303 VE C+VQVTCG+ TLNGLWLD+TV+CPRH++C A+ + +PNYD LLI K+NHSF+VQ Sbjct 3304 VENCIVQVTCGSMTLNGLWLDNTVWCPRHIMCPADQLTDPNYDALLISKTNHSFIVQKHI 3363 Query 3304 AGNVQLRVIGHSMQNCLLRLKVDTSNPKTPKYKFVRIQPGQTFSVLACYNGSPSGVYQCA 3363 LRV+ HSM LL+L VD +NP TP Y F ++PG +FSVLACYNG P+GV+ Sbjct 3364 GAQANLRVVAHSMVGVLLKLTVDVANPSTPAYTFSTVKPGASFSVLACYNGKPTGVFTVN 3423 Query 3364 MRPNHTIKGSFLNGSCGSVGFNIDYDCVSFCYMHHMELPTGVHAGTDLEGKFYGPFVDRQ 3423 +R N TIKGSFL GSCGSVG+ + ++F YMH MEL G H G+ +G YG F D+Q Sbjct 3424 LRHNSTIKGSFLCGSCGSVGYTENGGVINFVYMHQMELSNGTHTGSSFDGVMYGAFEDKQ 3483 Query 3424 TAQAAGTDTTITLNVLAWLYAAVINGDRWFLNRFTTTLNDFNLVAMKYNY-EPLTQDHVD 3482 T Q TD T+NV+AWLYAAV+NG +WF+ + +N A+ + E + +D Sbjct 3484 THQLQLTDKYCTINVVAWLYAAVLNGCKWFVKPTRVGIVTYNEWALSNQFTEFVGTQSID 3543 Query 3483 ILGPLSAQTGIAVLDMCAALKELLQNGMNGRTILGSTILEDEFTPFDVVRQCSGVTFQGK 3542 +L + +TG++V M AA++ L G G+TILG + LEDEFTP DV Q GV Q Sbjct 3544 ML---AHRTGVSVEQMLAAIQSL-HAGFQGKTILGQSTLEDEFTPDDVNMQVMGVVMQSG 3599 Query 3543 FKKIVKGTHHWMLLTFL---TSLLILVQSTQWSLFFFVYENAFLPFALGIMAVAACAMLL 3599 K+I G HW++ TF+ S++ L + T W+ F P LG MA C M Sbjct 3600 VKRISYGFIHWLISTFVLAYVSVMQLTKFTMWTYLFETIPTQMTPLLLGFMA---CVMFT 3656 Query 3600 VKHKHAFLCLFLLPSLATVAYFNMVYMP----ASWVMRIMTWLELADTSLSGYRLKDCVM 3655 VKHKH F+ LFLLP + Y N+VY P +S ++ + WL + D + Sbjct 3657 VKHKHTFMSLFLLPVALCLTYANIVYEPQTLISSTLIAVANWLTPTSVYMRTTHF-DFGL 3715 Query 3656 YASALVLLILMTARTVYDDAARRVWTLMNVITLVYKVYYGNSLDQAISMWALVISVTSNY 3715 Y S +L ++ R + L + + Y G+ I+ + ++TS+Y Sbjct 3716 YISLSFVLAIIVRRLYRPSMSNLALALCSGVMWFYTYVIGDH-SSPITYLMFITTLTSDY 3774 Query 3716 SGVVTTIMFLARAIVFVCVEYYPLLFITGNTLQCIMLVYCFLGYCCCCYFGLFCLLNRYF 3775 + V + LA+ I + Y P L ++ ++L+Y LGY C YFG+F LLN Sbjct 3775 TITVFATVNLAKFISGLVFFYAPHLGFILPEVKLVLLIYLGLGYMCTMYFGVFSLLNLKL 3834 Query 3776 RLTLGVYDYLVSTQEFRYMNSQGLLPPKSSIDAFKLNIKLLGIGGKPCIKVATVQSKMSD 3835 R+ LGVYDY VSTQEFR++ GL P++S +A LN KLLGIGG PCIKVATVQSK++D Sbjct 3835 RVPLGVYDYSVSTQEFRFLTGNGLHAPRNSWEALILNFKLLGIGGTPCIKVATVQSKLTD 3894 Query 3836 VKCTSVVLLSVLQQLRVESSSKLWAQCVQLHNDILLAKDTTEAFEKMVSLLSVLLSMQGA 3895 +KCTSVVLL+VLQQL +ES+SK W+ CV+LHN+IL A D TEAFE+ V L + L+S Sbjct 3895 LKCTSVVLLTVLQQLHLESNSKAWSYCVKLHNEILAAVDPTEAFERFVCLFATLMSFSAN 3954 Query 3896 VDINKLCEEMLDNRATLQAIASEFSSLPSYAAYATAQEAYEQAVSNGD-SEVVLKKLKKS 3954 VD++ L ++ +N + LQA +EFS L +YA TAQ +Y++A+++GD S VLK L+K+ Sbjct 3955 VDLDALANDLFENSSVLQATLTEFSHLATYAELETAQSSYQKALNSGDASPQVLKALQKA 4014 Query 3955 LNVAKSEFDHDAAMQRKLEKMADQAMTQMYKQARSEDKRAKVTSAMQTMLFTMLRKLDND 4014 +NVAK+ ++ D A+ RKLE+MA+QAMT MYKQAR+EDK+AK+ SAMQTMLF M++KLDND Sbjct 4015 VNVAKNAYEKDKAVARKLERMAEQAMTSMYKQARAEDKKAKIVSAMQTMLFGMIKKLDND 4074 Query 4015 ALNNIINNARDGCVPLNIIPLTTAAKLMVVVPDYGTYKNTCDGNTFTYASALWEIQQVVD 4074 LN +I NAR+GCVPL+I+PL + KL VV+PD + + + +YA +LW+I + + Sbjct 4075 VLNGVIANARNGCVPLSIVPLCASNKLRVVIPDISVWNKVVNWPSVSYAGSLWDITVINN 4134 Query 4075 ADSKIVQLSEINMDNSPNLAWPLIVTALR-ANSAVKLQNNELSPVALRQMSCAAGTTQTA 4133 D+++V+ +++ ++ + +L WPL++ R ++SAVKLQNNE+ P L+ M AG Q Sbjct 4135 VDNEVVKPTDV-VETNESLTWPLVIECSRSSSSAVKLQNNEIHPKGLKTMVITAGVDQVN 4193 Query 4134 CTDDNALAYYNNAKGGRFVLALLSDHQDLKWARFPKSDGTGTIYTELEPPCRFVTDTPKG 4193 C + +A+AYY +G R V+ LLS++ LKWA+ D G I EL+PPC+F+ PKG Sbjct 4194 C-NSSAVAYYEPVQGHRMVMGLLSENAHLKWAKVEGKD--GFINIELQPPCKFLIAGPKG 4250 Query 4194 PKVKYLYFIKGLNNLNRGMVLGSLAATVRLQAGNATEVPANSTVLSFCAFAVDPAKAYKD 4253 P+++YLYF+K LNNL+RG +LG +AATVRLQAG TE +NSTVL+ AFAVDPAKAY D Sbjct 4251 PEIRYLYFVKNLNNLHRGQLLGHIAATVRLQAGANTEFASNSTVLTLVAFAVDPAKAYLD 4310 Query 4254 YLASGGQPITNCVKMLCTHTGTGQAITVTPEANMDQESFGGASCCLYCRCHIDHPNPKGF 4313 Y+ SGG P++N VKML TGTG AI+V PEA DQE++GGAS CLYCR HI+HP+ G Sbjct 4311 YVGSGGTPLSNYVKMLAPKTGTGVAISVKPEATADQETYGGASVCLYCRAHIEHPDVSGV 4370 Query 4314 CDLKGKYVQIPTTCANDPVGFTLRNTVCTVCGMWKGYGCSCDQLREPMMQSADASTFLN 4372 C K ++VQIP DPVGF L+N C VC W GYGC+CD LR + + + FLN Sbjct 4371 CKYKTRFVQIPAH-VRDPVGFLLKNVPCNVCQYWVGYGCNCDALRNNTVPQSKDTNFLN 4428 Range 2: 1357 to 2094 Score:305 bits(781), Expect:5e-81, Method:Compositional matrix adjust., Identities:233/758(31%), Positives:363/758(47%), Gaps:57/758(7%) Query 1375 KYKGIKVQEGI--VDYGVRFFFYTSKEPVASIITKLNSLNEPLVTMPIGYVTHGLNLEEA 1432 + KG+ + I VD GV ++ Y++++ + +I N + + MP GYVTHGL+L ++ Sbjct 1357 RTKGVDTTKKIQTVD-GVSYYLYSARDALTDVIAAANGCSG-ICAMPFGYVTHGLDLAQS 1414 Query 1433 ARCMRSLKAPAVVSVSSPDAVTAYNGYLTSSSKTPEEYFVETTSLAGSYRDWSY-SGQRT 1491 +R +K P V ++S + + N + + +TPE F+ + G Y W SG Sbjct 1415 GNYVRQVKVPYVCLLASKEQIPIMNSDV--AIQTPETAFINNVTSNGGYHSWHLVSGDLI 1472 Query 1492 ELGVEFLKRGDKIVYHTTGSPI-----EFHL--DGEVLPLDKL---KSLLSLREVK--TI 1539 V + K + H +G I +F++ + LP L ++ L+ R + I Sbjct 1473 VKDVCYKK-----LLHWSGQTICYADNKFYVVKNDVALPFSDLEACRAYLTSRAAQQVNI 1527 Query 1540 KVFTTVDNTNLHTHIVDMSMTYGQQFGPTYLDGADVTKIKPHVNHEGKTFFVLPSDDTLR 1599 +V T+D N T I++ + T+ +Q G T+ G D++ P V G++ FV +D+ Sbjct 1528 EVLVTIDGVNFRTVILNDTTTFRKQLGATFYKGVDISDAFPTVKMGGESLFV--ADNLSE 1585 Query 1600 SEAF---EYYHTIDESFLGRYMSALNHTKKWKFPQVGGLTSIKWADNNCYLSSVLLALQQ 1656 SE EYY T D +FL RY S ++WKF G+ S+K ++ NCY+++ ++ + Sbjct 1586 SEKVVLKEYYGTSDVTFLQRYYSLQPLVQQWKFVVHDGVKSLKLSNYNCYINATIMMIDM 1645 Query 1657 V-EVKFNAPALQEAYYRARAGDAANFCALILAYSNKTVGELGDVRETMTHLLQHANLE-S 1714 + ++KF PALQ AY R + GD +F ALI+AY + T D + + LL A L S Sbjct 1646 LHDIKFVVPALQNAYLRYKGGDPYDFLALIMAYGDCTFDNPDDEAKLLHTLLAKAELTVS 1705 Query 1715 AKRVLNVVCKHCGQKTTTLKGVEAVMYMGTLSYDELKTGVSIPCVCGRNATQYLVQQESS 1774 AK V C CG + G+ A +Y G S +EL++ + CVCG + LV+ + Sbjct 1706 AKMVWREWCTVCGIRDIEYTGMRACVYAGVNSMEELQSVFNETCVCGSVKHRQLVEHSAP 1765 Query 1775 FVMMSAPPAEYKLQQGA---FLCANEYTG-NYQCGHYTHITAKETL-YRVDGAHLTKMSE 1829 ++++S E K+ + N + G GHY HI K+ L Y+ D LTK S+ Sbjct 1766 WLLVSG-LNEVKVSTSTDPIYRAFNVFQGVETSVGHYVHIRVKDGLFYKYDSGSLTKTSD 1824 Query 1830 YKGPVTDVFYKETSYTTAIKPVSYKLDGVTYTEIEPKLDGYYKKGNAYYTEQP-IDLVPT 1888 K +T V+Y YT V Y LDGVT E+ P L YY K YYT +P I P Sbjct 1825 MKCKMTSVWYPTVRYTADCNVVVYDLDGVTKVEVNPDLSNYYMKDGKYYTSKPTIKYSPA 1884 Query 1889 QPMPNASFDNFKLTCSNTKFADD-----LNQMTGFK--KPASRELTVTFFPDLNGDVVAI 1941 +P + + N L + D N + GF KP S++LT + P+ +GDV+ Sbjct 1885 TILPGSVYSNSCLVGVDGTPGSDTISKFFNDLLGFDETKPISKKLTYSLLPNEDGDVLLS 1944 Query 1942 DYRHYSTSFKKGAKLVHKPILWHINQTTNKTTYKPNIWCLRCLWSTKPVDTSNSFEVLVV 2001 ++ +Y+ +KKG L KPILW N + KPN LR L+ P+ N + VL Sbjct 1945 EFSNYNPVYKKGVMLKGKPILWVNNGVCDSALNKPNRASLRQLYDVAPIVLDNKYTVLQD 2004 Query 2002 EDTQGMDNLACESQTTTSEEVVENPTVQKEIIECDVKTTE---VVGNVILKPSEEGVKVT 2058 +Q E ++V P +++IE K V GN GV V Sbjct 2005 NTSQ-----LVEHNVPVVDDV---PITTRKLIEVKCKGLNKPFVKGNFSFVNDPNGVTVV 2056 Query 2059 QELGHEDLMAAYVE-ETSITIKKPNELSLALGLKTLAT 2095 LG +L A YV+ T + + N S L T+ + Sbjct 2057 DTLGLTELRALYVDINTRYIVLRDNNWSSLFKLHTVES 2094 Range 3: 22 to 957 Score:170 bits(431), Expect:2e-40, Method:Compositional matrix adjust., Identities:244/988(25%), Positives:411/988(41%), Gaps:121/988(12%) Query 9 NEKT--HVQLSLPVLQVRDV---LVRGFGDSVEEALSEAREHLK-NGTCGLVELE-KGVL 61 NEK HV ++P+ D+ L F D E A ++ LK G V + + + Sbjct 22 NEKRSDHVACTVPLCDTDDMACKLTPWFEDG-ETAFNQVSSILKEKGKILFVPMHMQRAM 80 Query 62 PQLEQPYVFIKRSDALSTNHGHKVVELVAELD--GIQFGRSGIT---LGVLVPHVGETPI 116 L P V++ H +V +A D G R+ + LG+ P+ Sbjct 81 KFLPGPRVYLVERLTGGMLSKHFLVNQLAYKDQVGAAMMRTTLNAKPLGMFFPYDSSLET 140 Query 117 AYRNVLLRKNGNKGAGGHSFGIDLKS---YDLGDELGTDPIEDYEQNWNTKHGSGALREL 173 LLRKNG G D K ++ D+L DP Y QN L Sbjct 141 GEYTFLLRKNGLGGQLFRERPWDRKETPYVEILDDLEADPTGKYSQN------------L 188 Query 174 TRELNGGVVTRYVDNNFCGPDGYPLECIKDFLARAGKSMCTLSE-QLDY---IESKRGVY 229 ++L GG +D CG +G P+ +A+ G + TL++ ++D ++S R + Sbjct 189 LKKLIGGDCIP-IDQYMCGKNGKPIADYAKIVAKEG--LTTLADIEVDVKSRMDSDRFI- 244 Query 230 CCREHEHEIVWFTERSEKSYEHQTPFEIKSAKKFDTFKGECPKFVFPLNSKVKVIQP-RV 288 + + +VW R Y QT F I S + D K P+ F + S++ ++ P + Sbjct 245 VLNKKLYRVVWNVTRRNVPYPKQTAFTIVSVVQCDD-KDSVPEHTFTIGSQILMVSPLKA 303 Query 289 EKKKTEGFMGRI-RSVYPVATPQECNDMHLSTLMKCNHCDEVSWQTCDFLKATCEQCGTE 347 K R+ + Y Q+ ++ S + CN C +W T + ++ CG Sbjct 304 TNNKNFNLKQRLLYTFYGKDAVQQPGYIYHSAYVDCNACGRGTWCTGNAIQGFACDCGAN 363 Query 348 NLVCE-GPTTCGYLPTNAVVKMPCPACQDPEVGPEHSVADYHNHSNIETRLRKGGR--TK 404 + + G +P NA+ CP + HS A +N + + + GG+ T Sbjct 364 YSANDVDLQSSGLVPRNALFLANCPCANNGAC--SHSAAQVYNILDGKACVEVGGKSFTL 421 Query 405 CFGGCVFSYVGCYNKRAYWVPRASA---NIG-ANHTGITG---ENVETLNEDLLEILNRE 457 FGG V++Y+GC + Y+VPRA + IG A TG TG + VET N L + Sbjct 422 TFGGVVYAYMGCCDGTMYFVPRAKSCVSRIGDAIFTGCTGTWDKVVETANL----FLEKA 477 Query 458 RVNINIVGDFRFNEEVAIILASFSASPSAFIETVKGLDYKSFKVIVESCGN--YKVTNGK 515 + ++N F E ++LA S + S F E S++ + + N + VT G Sbjct 478 QRSLNFCQQFALTE---VVLAILSGTTSTFEELRDLCHNASYEKVRDHLVNHGFVVTIGD 534 Query 516 PVTGAWNIGQQ----RSILTPLCGFP---------SQAAGVIRSIFSRTLDAANHSILDL 562 + A NIG +I P F S I S LD + +I+ Sbjct 535 YIRDAINIGANGVCNATINAPFIAFTGLGESFKKVSAIPWKICSNLKSALDYYSSNIMFR 594 Query 563 QRAAVTTLDGISEQSLRLVDAMVYTSDLLTNSVVVMAY-------VTGGLVQQTMQWLSN 615 D +S L+D T + S V+ Y V G + LS+ Sbjct 595 VFPYDIPCD-VSNFVELLLDCGKLT---VATSYFVLRYLDEKFDTVLGTVSSACQTALSS 650 Query 616 MLGTAVDKLKPVFTWVEAKLSAGVEFLRDAWEILKFLITGVFDVIKGQIQVATDNIKECV 675 L V ++ +AG F+ D +++ K L+ ++ ++ + V Sbjct 651 FLNACV---------AASRATAG--FINDMFKLFKVLMHKLYVYTSCGYVAVAEHSSKIV 699 Query 676 KIFLGVVNKALEMCLDQVTIAGTKLRAL----------NLGEVFIAQSRGLYRQCIRGKE 725 + L +++KA+++ V+ AGTKL A+ N G F ++ + ++G Sbjct 700 QQVLDIMSKAMKLLHTNVSWAGTKLSAIIYEGREALLFNSGTYFCLSTKA---KTLQG-- 754 Query 726 QLQLLMPLKAPKEVTFL-----EGDAHDTVLTSEEVVLKSGELEALETPIDSFTSGAVVG 780 Q+ L++P K+ + D D S V + G+LE P + +VG Sbjct 755 QMNLVLPGDYNKKTLGILDPVPNADTIDVNANSTVVDVVHGQLE----PTNEHGPSMIVG 810 Query 781 TPVCINGLMLLELENKEQYCALSPGLLATNNVFRLKGGAPVKGVTFGEDTVLEVQGYKNV 840 V ++ + + E++E Y + G + + +FRLKGG P K VTFG+ +EV Y++V Sbjct 811 NYVLVSDKLFVRTEDEEFYPLCTNGKVVST-LFRLKGGMPSKKVTFGDVNTVEVTAYRSV 869 Query 841 KITFELDVRVDKVL-NEKCSVYTVESGTEVTEFACVVAEAVVKTLQPVSDLLTPMGIDLD 899 IT+++ +D +L + K + +TVE V +F V+ + V+ L P+ G D++ Sbjct 870 SITYDIHPVLDALLSSSKLATFTVEKDLLVEDFVDVIKDEVLTLLTPLLRGYDIDGFDVE 929 Query 900 EWSVATFYLFDDAGEEKLSSRMYCSFYP 927 ++ Y+++ G+ SS M S P Sbjct 930 DFIDVPCYVYNQDGDCAWSSNMTFSINP 957 Range 4: 1103 to 1290 Score:137 bits(344), Expect:3e-30, Method:Compositional matrix adjust., Identities:76/188(40%), Positives:103/188(54%), Gaps:8/188(4%) Query 957 LPLEFGASTETPHVEEEEEEEDWLDDAIEAE---PEPEPLPEEPVNQFVGYLK-----LT 1008 LP++ AS H + + + L + E P + P V K + Sbjct 1103 LPIQDEASENQVHQVSDLQGNELLCSETKVEIVQPRQDLKPRRSRKSKVDLSKYKHTVIN 1162 Query 1009 DNVAIKCIDIVKEAQSAKPTVIVNAANTHLKHGGGVAGALNKATNGAMQNESDEYIRQNG 1068 ++V + D ++ A ++VNAAN HLKHGGG+AG +NKA+ G +Q ESDEYI NG Sbjct 1163 NSVTLVLGDAIQIASLLPKCILVNAANRHLKHGGGIAGVINKASGGDVQEESDEYISNNG 1222 Query 1069 PLTVGGSCLLSGHNLAEKCLHVVGPNLNAGEDVQLLKRAYENFNSQDVLLAPLLSAGIFG 1128 PL VG S LL GH LA+ LHVVGP+ ED LLKR Y+ FN +++ PL+SAGIF Sbjct 1223 PLHVGDSVLLKGHGLADAILHVVGPDARNNEDAALLKRCYKAFNKHTIVVTPLISAGIFS 1282 Query 1129 AKPLQSLK 1136 P S + Sbjct 1283 VDPKVSFE 1290 >RecName: Full=Replicase polyprotein 1a; Short=pp1a; AltName: Full=ORF1a polyprotein; Contains: RecName: Full=Non-structural protein 1; Short=nsp1; AltName: Full=p28; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p65; Contains: RecName: Full=Papain-like protease nsp3; Short=PL-PRO; AltName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=PL1-PRO/PL2-PRO; AltName: Full=PL1/PL2; AltName: Full=PL2-PRO; AltName: Full=Papain-like proteinases 1/2; AltName: Full=p210; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; AltName: Full=Peptide HD2; AltName: Full=p44; Contains: RecName: Full=3C-like proteinase nsp5; Short=3CL-PRO; Short=3CLp; AltName: Full=M-PRO; AltName: Full=nsp5; AltName: Full=p27; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; AltName: Full=p10; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; AltName: Full=p22; Contains: RecName: Full=RNA-capping enzyme subunit nsp9; AltName: Full=Non-structural protein 9; Short=nsp9; AltName: Full=p12; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; AltName: Full=p15; Contains: RecName: Full=Non-structural protein 11; Short=nsp11 [Murine hepatitis virus strain A59] Sequence ID: P0C6V0.1 Length: 4468 Range 1: 1577 to 4466 Score:1853 bits(4800), Expect:0.0, Method:Compositional matrix adjust., Identities:1114/2973(37%), Positives:1631/2973(54%), Gaps:173/2973(5%) Query 1494 GVEFLKRGDKIVYHTTGSPIEFHLDGEVLPLDKLKSLLSLREVKTIKVFTTVDNTNLHTH 1553 G+ +G K Y GS E + ++++LL+ + V TVD N + Sbjct 1577 GIFVSSQGKKFGYVQNGSFKE-------ASVSQIRALLA----NKVDVLCTVDGVNFRSC 1625 Query 1554 IVDMSMTYGQQFGPTYLDGADVTKIKPHVNHEGKTFF----VLPSDDTLRSEAFEYYHTI 1609 V +G+ G + DG +VTK++ ++GK FF + +D +AF + Sbjct 1626 CVAEGEVFGKTLGSVFCDGINVTKVRCSAIYKGKVFFQYSDLSEADLVAVKDAFGF---- 1681 Query 1610 DESFLGRYMSALNHTKKWKFPQVGGLTSIKWADNNCYLSSVLLALQQVEVKFNAPALQEA 1669 DE L +Y + L KW G + K ++NNCY++ L LQ + +KF QEA Sbjct 1682 DEPQLLKYYTMLGMC-KWPVVVCGNYFAFKQSNNNCYINVACLMLQHLSLKFPKWQWQEA 1740 Query 1670 YYRARAGDAANFCALILAYSNKTVGELGDVRETMTHLLQHANLESAKRVLNVVCKHCGQK 1729 + R+G F +L+LA + E D + M +L+ A+L A L VCK CG K Sbjct 1741 WNEFRSGKPLRFVSLVLAKGSFKFNEPSDSIDFMRVVLREADLSGATCNLEFVCK-CGVK 1799 Query 1730 TTTLKGVEAVMYMGTLSYDELKTGVSIPCVCGRNATQYLVQQESSFVMMSAPPAEYKLQQ 1789 KGV+AVM+ GTL +L G +I C CG + Q F++ S P KL Sbjct 1800 QEQRKGVDAVMHFGTLDKGDLVRGYNIACTCGSKLV-HCTQFNVPFLICSNTPEGRKLPD 1858 Query 1790 GAFLCANEYTGNYQCGHYTHITAKETLYRVDGAHLTKMSEYKGPVTDVFY-KETSYTTAI 1848 + AN +TG GHYTH+ K D ++ K+SE KG TD Y K T + Sbjct 1859 DV-VAANIFTGG-SVGHYTHVKCKPKYQLYDACNVNKVSEAKGNFTDCLYLKNLKQTFSS 1916 Query 1849 KPVSYKLDGVTYTEIEPKLDGYYKKGNAYYTEQPIDL-VPTQPMPNASFDNFKLTCSNTK 1907 ++ LD V E +P L YY + YYT+ I T + + NFKL Sbjct 1917 VLTTFYLDDVKCVEYKPDLSQYYCESGKYYTKPIIKAQFRTFEKVDGVYTNFKLV--GHS 1974 Query 1908 FADDLNQMTGFK-KPASRELTVTFFPDLNGDVVAIDYRHYSTSFKKGAKLVHKPILW--H 1964 A+ LN GF E +T +P GDVV Y + + G KP++W H Sbjct 1975 IAEKLNAKLGFDCNSPFVEYKITEWPTATGDVVLASDDLYVSRYSSGCITFGKPVVWLGH 2034 Query 1965 INQTTNKTTY--KPNIWCLRCLWSTKPVDTSNSFE------VLVVEDTQGMD-------- 2008 + TY +P++ C ++ PVD S + ++V G D Sbjct 2035 EEASLKSLTYFNRPSVVCEN-KFNVLPVDVSEPTDKGPVPAAVLVTGVPGADASAGAGIA 2093 Query 2009 --NLACESQTTTSE---EVVENPTVQ----KEIIECDVKT-TEVVGNVILKPSEEGVKVT 2058 AC S + + EV + P+V KE+ VK +V G+V++ KV Sbjct 2094 KEQKACASASVEDQVVTEVRQEPSVSAADVKEVKLNGVKKPVKVEGSVVVNDPTSETKVV 2153 Query 2059 QELGHEDLMAAYVEETSITIKKPNELSLALGLKTLATHGAAAINSV--PWSKIL------ 2110 + L D+ ++ + NELS + T+ + + + P +L Sbjct 2154 KSLSIVDVYDMFLTGCKYVVWTANELSRLVNSPTVREYVKWGMGKIVTPAKLLLLRDEKQ 2213 Query 2111 AYVKPFLGQTAVITSNCIKK-----CVQRVFSNYMPYVITLLFQLCTFTKSTNSRIKASL 2165 +V P + + I C K C + N VI +T S++ L Sbjct 2214 EFVAPKVVKAKAIACYCAVKWFLLYCFSWIKFNTDNKVI--------YTTEVASKLTFKL 2265 Query 2166 PTTIAKNSVKSVAKLCLDVCINY-VKSPKFSKLFTI-VMW--LLLLSICLGSL------- 2214 KN++++ N+ V S F + T+ ++W L ++ L Sbjct 2266 CCLAFKNALQT---------FNWSVVSRGFFLVATVFLLWFNFLYANVILSDFYLPNIGP 2316 Query 2215 --TYVTAVLGVCLSSLGVPSYCD--GVRELYINSSNVTTMDFCQGYFPCSVCLSGLDSLD 2270 T+V ++ ++ GV + CD V +L SS FC G C +C SG D LD Sbjct 2317 LPTFVGQIVAWFKTTFGVSTICDFYQVTDLGYRSS------FCNGSMVCELCFSGFDMLD 2370 Query 2271 SYPALETIQ-VTISSYKLD-LTFLGLAAEWLLAYMLFTKFFYLLGLSAIMQAFFGYFASH 2328 +Y A+ +Q V D ++ L E ++ Y L+T FY L + MQ + Sbjct 2371 NYDAINVVQHVVDRRLSFDYISLFKLVVELVIGYSLYTVCFYPLFVLIGMQLLTTWLPEF 2430 Query 2329 FISNS--WLMWFIISIVQMAPVSAMVRMYIFFASFYYVWKSYVHIMDGCTSSTCMMCYKR 2386 F+ + W + + M P ++R YI + Y V+ H+M GC+ C+ CYKR Sbjct 2431 FMLETMHWSARLFVFVANMLPAFTLLRFYIVVTAMYKVYCLCRHVMYGCSKPGCLFCYKR 2490 Query 2387 NRATRVECTTIVNGVKRSFYVYANGGRGFCKAHNWNCLNCDTFCAGSTFISDEVARDLSL 2446 NR+ RV+C+T+V G R + V ANGG GFC H WNCLNC+++ G+TFI+ E A DLS Sbjct 2491 NRSVRVKCSTVVGGSLRYYDVMANGGTGFCTKHQWNCLNCNSWKPGNTFITHEAAADLSK 2550 Query 2447 QFKRPINPTDQSAYVVDSVTVKNGALHLYFDKAGQKTYERHPLSHFVNLDNLRANNTKGS 2506 + KRP+NPTD + Y V V ++ L++++ GQ+ Y+ S FV+++ L + KG Sbjct 2551 ELKRPVNPTDSAYYSVTEVKQVGCSMRLFYERDGQRVYDDVNASLFVDMNGLLHSKVKGV 2610 Query 2507 LPINVIVFDGKSKCEESAAKSASVYYSQLMCQPILLLDQALVSDVGDSTEVSVKMFDAYV 2566 +V+V + ++ +++ A+V+Y+Q + +P+L++++ L++ VS MFD YV Sbjct 2611 PETHVVVVENEA--DKAGFLGAAVFYAQSLYRPMLMVEKKLITTANTGLSVSRTMFDLYV 2668 Query 2567 DTFSATFSVPMEKLKALVATAHSELAKGVALDGVLSTFVSAARQG-VVDTDVDTKDVIEC 2625 D+ V + L + V AH+ L +GV L+ V+ TF+ AR+ +D+DV+TK + + Sbjct 2669 DSLLNVLDVDRKSLTSFVNAAHNSLKEGVQLEQVMDTFIGCARRKCAIDSDVETKSITKS 2728 Query 2626 LKLSHHSDIEVTGDSCNNFMLTYNKVENMTPRDLGACIDCNARHINAQVAKSHNVSLVWN 2685 + + ++ ++ T +SCNN + TY K + + DLG I NA+H+ A VAK+ NV+ +W+ Sbjct 2729 VMSAVNAGVDFTDESCNNLVPTYVKSDTIVAADLGVLIQNNAKHVQANVAKAANVACIWS 2788 Query 2686 VKDYMSLSEQLRKQIRSAAKKNNIPFRLTCATTRQVVNVITTKISLKGGKVVSTWFKLLL 2745 V + LS L+ ++R A K + +LT V ++TT SLKGG V S + L Sbjct 2789 VDAFNQLSADLQHRLRKACSKTGLKIKLTYNKQEANVPILTTPFSLKGGAVFSRMLQWLF 2848 Query 2746 KVTLLCVLAALFCYVIMPVHSLSVHDGYTNEIIGYKAIQDGVTRDIVSTDDCFANKHAGF 2805 L+C + + +MP +++ D +K I +GV RD+ TD CFANK F Sbjct 2849 VANLICFIVL---WALMPTYAVHKSDMQLPLYASFKVIDNGVLRDVSVTDACFANKFNQF 2905 Query 2806 DSWFSQRGG--SYRNDKNCPVVAAIITREIGFIVPGLPGTVLRALNGDFLHFLPRVFSAV 2863 D W+ G YRN K CPVV A+I ++IG + +P TVLR LHF+ F+ Sbjct 2906 DQWYESTFGLAYYRNSKACPVVVAVIDQDIGHTLFNVPTTVLR-YGFHVLHFITHAFATD 2964 Query 2864 GNICYTPSKLIEYSDFATSACVLAAECTIFKDAMGKPVPYCYDTNLLEGSISYSELRPDT 2923 CYTP I Y +F S CVL++ CT+ A G P PYCY ++ + YS L P Sbjct 2965 SVQCYTPHMQIPYDNFYASGCVLSSLCTMLAHADGTPHPYCYTGGVMHNASLYSSLAPHV 3024 Query 2924 RYVLMDGS-IIQFPNTYLEGSVRVVTTFDAEYCRHGTCERSEVGVCLSTSGRWVLNNEHY 2982 RY L + I+FP EG VRVV T YCR G CE +E G+C + + WVLNN +Y Sbjct 3025 RYNLASSNGYIRFPEVVSEGIVRVVRTRSMTYCRVGLCEEAEEGICFNFNRSWVLNNPYY 3084 Query 2983 RALPGVFCGVDAMNLIANIFTPLVQPVGALDVSASVVAGGIIAILVTCAAYYFMKFRRAF 3042 RA+PG FCG +A +LI + LV+P+ ++AS VAG I+AI+V A YY +K +RAF Sbjct 3085 RAMPGTFCGRNAFDLIHQVLGGLVRPIDFFALTASSVAGAILAIIVVLAFYYLIKLKRAF 3144 Query 3043 GEYNHVVAANALLFLMSFTILCLAPAYSFLPGVYSIFYLYLTFYFTNDVSFLAHLQWFAM 3102 G+Y VV N +++ ++F +L + Y L +Y+ FY Y T YF +++S + HLQW M Sbjct 3145 GDYTSVVVINVIVWCINFLMLFVFQVYPTLSCLYACFYFYTTLYFPSEISVVMHLQWLVM 3204 Query 3103 FSPIVPFWITAIYVFCISLKHFHWFFSNYLKK---RVMFNGVTFSTFEEAALCTFLLNKE 3159 + I+P W IYV + H W FS Y +K V +G TFEE AL TF++ KE Sbjct 3205 YGAIMPLWFCIIYVAVVVSNHALWLFS-YCRKIGTEVRSDG----TFEEMALTTFMITKE 3259 Query 3160 MYLRLRSETLLPLTQYNRYLALYNKYKYFSGALDTTSYREAACCHLAKALNDFS-NSGAD 3218 Y +L++ + +NRYL+LYNKY+YFSG +DT +YREAAC LAKA+ F+ N+G D Sbjct 3260 SYCKLKNS--VSDVAFNRYLSLYNKYRYFSGKMDTAAYREAACSQLAKAMETFNHNNGND 3317 Query 3219 VLYQPPQTSITSAVLQSGFRKMAFPSGKVEGCMVQVTCGTTTLNGLWLDDTVYCPRHVVC 3278 VLYQPP S+T++ LQSG KM P+ KVE C+V VT G TLNGLWLDD VYCPRHV+C Sbjct 3318 VLYQPPTASVTTSFLQSGIVKMVSPTSKVEPCIVSVTYGNMTLNGLWLDDKVYCPRHVIC 3377 Query 3279 TAEDMLNPNYDDLLIRKSNHSFLVQAGNVQLRVIGHSMQNCLLRLKVDTSNPKTPKYKFV 3338 ++ DM +P+Y +LL R ++ F V +G + L V+ + MQ C L L V NP TPKY F Sbjct 3378 SSADMTDPDYPNLLCRVTSSDFCVMSGRMSLTVMSYQMQGCQLVLTVTLQNPNTPKYSFG 3437 Query 3339 RIQPGQTFSVLACYNGSPSGVYQCAMRPNHTIKGSFLNGSCGSVGFNIDYDCVSFCYMHH 3398 ++PG+TF+VLA YNG P G + +R +HTIKGSFL GSCGSVG+ + D V F YMH Sbjct 3438 VVKPGETFTVLAAYNGRPQGAFHVTLRSSHTIKGSFLCGSCGSVGYVLTGDSVRFVYMHQ 3497 Query 3399 MELPTGVHAGTDLEGKFYGPFVDRQTAQAAGTDTTITLNVLAWLYAAVINGDRWFLNRFT 3458 +EL TG H GTD G FYGP+ D Q Q D T T+NV+AWLYAA+ N WF+ + Sbjct 3498 LELSTGCHTGTDFSGNFYGPYRDAQVVQLPVQDYTQTVNVVAWLYAAIFNRCNWFVQSDS 3557 Query 3459 TTLNDFNLVAMKYNYEPLTQDHVDILGPLSAQTGIAVLDMCAALKELLQNGMNGRTILGS 3518 +L +FN+ AM + + D V L L++ TG+ V + AA+K L +G G+ ILGS Sbjct 3558 CSLEEFNVWAMTNGFSSIKADLV--LDALASMTGVTVEQVLAAIKR-LHSGFQGKQILGS 3614 Query 3519 TILEDEFTPFDVVRQCSGVTFQGKFKKIVKGTHHWMLLTFLTSLLILVQSTQWSLFFFVY 3578 +LEDE TP DV +Q +GV Q K +++KGT W+L + I+ +W++F +V Sbjct 3615 CVLEDE-TPSDVYQQLAGVKLQSKRTRVIKGTCCWILASTFLFCSIISAFVKWTMFMYVT 3673 Query 3579 ENAFLPFALGIMAVAAC----AMLLVKHKHAFLCLFLLPSLATVAYFNMVYMPASWVMRI 3634 + LG+ A C AMLL+KHKH +L ++++P L T +V S+ Sbjct 3674 TH-----MLGVTLCALCFVSFAMLLIKHKHLYLTMYIMPVLCTFYTNYLVVYKQSFRGLA 3728 Query 3635 MTWLELADTSLSGYRLKDCVMYASA-LVLLILMTARTVYDDAARRVWTLMNVITLVYKVY 3693 WL ++ Y D V+Y LV ++ +T R++ D ++ + +++LV Y Sbjct 3729 YAWLSHFVPAVD-YTYMDEVLYGVVLLVAMVFVTMRSINHDVFSIMFLVGRLVSLVSMWY 3787 Query 3694 YGNSLDQAISMWALVISVTSNYSGVVTTIMFLARAIVFVCVEYYPLLFITG-NTLQCIML 3752 +G +L++ + ++ + S+ Y+ TT++ LA A V +L+ T ++ ++L Sbjct 3788 FGANLEEEVLLF--LTSLFGTYTW--TTMLSLATAKVIAKWLAVNVLYFTDVPQIKLVLL 3843 Query 3753 VYCFLGYCCCCYFGLFCLLNRYFRLTLGVYDYLVSTQEFRYMNSQGLLPPKSSIDAFKLN 3812 Y +GY CCCY+G+ LLN FR+ LGVY+Y +S QE RYMN+ GL PP++S +A LN Sbjct 3844 SYLCIGYVCCCYWGILSLLNSIFRMPLGVYNYKISVQELRYMNANGLRPPRNSFEALMLN 3903 Query 3813 IKLLGIGGKPCIKVATVQSKMSDVKCTSVVLLSVLQQLRVESSSKLWAQCVQLHNDILLA 3872 KLLGIGG P I+V+ +QS+++DVKC +VVLL+ LQ L + S+SKLW C LHN+IL Sbjct 3904 FKLLGIGGVPVIEVSQIQSRLTDVKCANVVLLNCLQHLHIASNSKLWQYCSTLHNEILAT 3963 Query 3873 KDTTEAFEKMVSLLSVLLSMQGAVD------INKLCEEMLDNRATLQAIASEFSSLPSYA 3926 D + AF+K+ LL VL + AVD I ++ ++ + + LQA+ SEF ++ S+ Sbjct 3964 SDLSMAFDKLAQLLVVLFANPAAVDSKCLASIEEVSDDYVRDNTVLQALQSEFVNMASFV 4023 Query 3927 AYATAQEAYEQAVSNGDS-EVVLKKLKKSLNVAKSEFDHDAAMQRKLEKMADQAMTQMYK 3985 Y A++ ++A ++G + + +K+L+K+ N+AKS ++ D A+ RKLE+MAD A+T MYK Sbjct 4024 EYELAKKNLDEAKASGSANQQQIKQLEKACNIAKSAYERDRAVARKLERMADLALTNMYK 4083 Query 3986 QARSEDKRAKVTSAMQTMLFTMLRKLDNDALNNIINNARDGCVPLNIIPLTTAAKLMVVV 4045 +AR DK++KV SA+QTMLF+M+RKLDN ALN+I++NA GCVPLN IP T+ L ++V Sbjct 4084 EARINDKKSKVVSALQTMLFSMVRKLDNQALNSILDNAVKGCVPLNAIPSLTSNTLTIIV 4143 Query 4046 PDYGTYKNTCDGNTFTYASALWEIQQVVDADSKIVQLSEINMDNSPNLAWPLIVTALRAN 4105 PD + D TYA +W IQ + DAD + QL+EI+++++ WPL++ A R N Sbjct 4144 PDKQVFDQVVDNVYVTYAGNVWHIQFIQDADGAVKQLNEIDVNST----WPLVIAANRHN 4199 Query 4106 --SAVKLQNNELSPVALRQMSCAAGTTQTACTDDNALAYYNNAKGGRFVLALLSDHQDLK 4163 S V LQNNEL P LR +G+ T YYN G+ V A+LSD LK Sbjct 4200 EVSTVVLQNNELMPQKLRTQVVNSGSDMNCNTPTQ--CYYNTTGTGKIVYAILSDCDGLK 4257 Query 4164 WARFPKSDGTGTIYTELEPPCRFVTDTPKGPKVKYLYFIKGLNNLNRGMVLGSLAATVRL 4223 + + K DG + EL+PPC+F KG K+KYLYF+KG N L RG V+G+L++TVRL Sbjct 4258 YTKIVKEDGNCVV-LELDPPCKFSVQDVKGLKIKYLYFVKGCNTLARGWVVGTLSSTVRL 4316 Query 4224 QAGNATEVPANSTVLSFCAFAVDPAKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTP 4283 QAG ATE +NS +LS CAF+VDP K Y DY+ GG P+TNCVKMLC H GTG AIT+ P Sbjct 4317 QAGTATEYASNSAILSLCAFSVDPKKTYLDYIKQGGVPVTNCVKMLCDHAGTGMAITIKP 4376 Query 4284 EANMDQESFGGASCCLYCRCHIDHPNPKGFCDLKGKYVQIPTTCANDPVGFTLRNTVCTV 4343 EA +Q+S+GGAS C+YCR ++HP+ G C L+GK+VQ+P DPV + L + VC V Sbjct 4377 EATTNQDSYGGASVCIYCRSRVEHPDVDGLCKLRGKFVQVPLG-IKDPVSYVLTHDVCQV 4435 Query 4344 CGMWKGYGCSCDQLREPMMQSADASTFLNGFAV 4376 CG W+ CSC QS D + FLNGF V Sbjct 4436 CGFWRDGSCSCVGTGS-QFQSKD-TNFLNGFGV 4466 Range 2: 1320 to 1474 Score:83.6 bits(205), Expect:5e-14, Method:Compositional matrix adjust., Identities:51/155(33%), Positives:80/155(51%), Gaps:2/155(1%) Query 1007 LTDNVAIKCIDIVKEAQSAKPTVIVNAANTHLKHGGGVAGALNKATNGAMQNESDEYIRQ 1066 +T NV D++K + VIVN AN + HG GVAGA+ + A E+ + ++ Sbjct 1320 ITPNVCFVKGDVIKVVRLVNAEVIVNPANGRMAHGAGVAGAIAEKAGSAFIKETSDMVKA 1379 Query 1067 NGPLTVGGSCLLSGHNLAEKCLHVVGPNL--NAGEDVQLLKRAYENFNSQDVLLAPLLSA 1124 G VG +G L +K L++VGP+ + + LL+RAY++ N D ++ L+SA Sbjct 1380 QGVCQVGECYESAGGKLCKKVLNIVGPDARGHGKQCYSLLERAYQHINKCDNVVTTLISA 1439 Query 1125 GIFGAKPLQSLKMCVEIVRTQVYLAVNDKSLYDQI 1159 GIF SL + +V V L N++ +D I Sbjct 1440 GIFSVPTDVSLTYLLGVVTKNVILVSNNQDDFDVI 1474 Range 3: 577 to 964 Score:72.8 bits(177), Expect:1e-10, Method:Compositional matrix adjust., Identities:99/405(24%), Positives:173/405(42%), Gaps:50/405(12%) Query 570 LDGISEQSLRLVDA-------MVYTSDLLTNSVVVMAYVTGGLVQQTMQWLSNMLGTAVD 622 LDG+ +S L+ + MV S +T+ + MA + V+ +++ + G Sbjct 577 LDGLVPRSYYLIKSGQAFTSMMVNFSHEVTDMCMDMALLFMHDVKVATKYVKKVTGKLAV 636 Query 623 KLKPVFTWVEAKLSAGVEFLRD------AWEILKFLITGVFDVIKGQIQVATDNIKECVK 676 + K + V K++ + D W + L+ G+F V G I + + E VK Sbjct 637 RFKALGVAVVRKITEWFDLAVDIAASAAGWLCYQ-LVNGLFAVANGVITFVQE-VPELVK 694 Query 677 IFLGVVNKALEMCLDQVTIA---GTKLRALNLGEVFIAQSRGLYRQCIRGKEQLQLLMPL 733 F+ ++ +D ++++ G + V +A S+ +Y + K +MP+ Sbjct 695 NFVDKFKAFFKVLIDSMSVSILSGLTVVKTASNRVCLAGSK-VYE--VVQKSLSAYVMPV 751 Query 734 KAPKEVTFLEGDAHDTVLTSEEVVLKSGEL--EALETPIDSFTSGAVVGTPVCINGLMLL 791 E T L G+ V + V + L + P SF +CI + + Sbjct 752 GC-SEATCLVGEIEPAVFEDDVVDVVKAPLTYQGCCKPPTSFEK-------ICIVDKLYM 803 Query 792 ELENKEQYCAL----SPGLLATNNVFRLKGGAPVKGVTFGED-TVLEVQGYKNVKITFEL 846 + Y + + G+L F G K V F + V ++ + +KITF L Sbjct 804 AKCGDQFYPVVVDNDTVGVLDQCWRFPCAG----KKVEFNDKPKVRKIPSTRKIKITFAL 859 Query 847 DVRVDKVLNEKCSVYTVESGTEVTEFACVVAEAVVKTLQPVSD---LLTPMGIDLDEWSV 903 D D VL++ CS + V+ + E VV +AV TL P + + T + LD + Sbjct 860 DATFDSVLSKACSEFEVDKDVTLDELLDVVLDAVESTLSPCKEHDVIGTKVCALLDRLAG 919 Query 904 ATFYLFDDAGEEKLSSRMYCSFYPPDEEE-------DCEECEDEE 941 YLFD+ G+E ++ RMYCSF PD+E+ D +E +D++ Sbjct 920 DYVYLFDEGGDEVIAPRMYCSFSAPDDEDCVAADVVDADENQDDD 964 >RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Host translation inhibitor nsp1; Short=nsp1; AltName: Full=p28; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p65; Contains: RecName: Full=Papain-like proteinase nsp3; Short=PL-PRO; AltName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=p210; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; AltName: Full=Peptide HD2; AltName: Full=p44; Contains: RecName: Full=3C-like proteinase nsp5; Short=3CL-PRO; Short=3CLp; AltName: Full=M-PRO; AltName: Full=nsp5; AltName: Full=p27; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; AltName: Full=p10; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; AltName: Full=p22; Contains: RecName: Full=Viral protein genome-linked nsp9; AltName: Full=Non-structural protein 9; Short=nsp9; AltName: Full=RNA-capping enzyme subunit nsp9; AltName: Full=p12; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; AltName: Full=p15; Contains: RecName: Full=RNA-directed RNA polymerase nsp12; Short=Pol; Short=RdRp; AltName: Full=nsp12; AltName: Full=p100; Contains: RecName: Full=Helicase nsp13; Short=Hel; AltName: Full=nsp13; AltName: Full=p67; Contains: RecName: Full=Guanine-N7 methyltransferase nsp14; Short=ExoN; AltName: Full=nsp14; Contains: RecName: Full=Uridylate-specific endoribonuclease nsp15; AltName: Full=NendoU; AltName: Full=nsp15; AltName: Full=p35; Contains: RecName: Full=2'-O-methyltransferase nsp16; AltName: Full=nsp16 [Murine hepatitis virus strain A59] Sequence ID: P0C6X9.1 Length: 7176 Range 1: 1577 to 4446 Score:1844 bits(4776), Expect:0.0, Method:Compositional matrix adjust., Identities:1106/2951(37%), Positives:1619/2951(54%), Gaps:171/2951(5%) Query 1494 GVEFLKRGDKIVYHTTGSPIEFHLDGEVLPLDKLKSLLSLREVKTIKVFTTVDNTNLHTH 1553 G+ +G K Y GS E + ++++LL+ + V TVD N + Sbjct 1577 GIFVSSQGKKFGYVQNGSFKE-------ASVSQIRALLA----NKVDVLCTVDGVNFRSC 1625 Query 1554 IVDMSMTYGQQFGPTYLDGADVTKIKPHVNHEGKTFF----VLPSDDTLRSEAFEYYHTI 1609 V +G+ G + DG +VTK++ ++GK FF + +D +AF + Sbjct 1626 CVAEGEVFGKTLGSVFCDGINVTKVRCSAIYKGKVFFQYSDLSEADLVAVKDAFGF---- 1681 Query 1610 DESFLGRYMSALNHTKKWKFPQVGGLTSIKWADNNCYLSSVLLALQQVEVKFNAPALQEA 1669 DE L +Y + L KW G + K ++NNCY++ L LQ + +KF QEA Sbjct 1682 DEPQLLKYYTMLGMC-KWPVVVCGNYFAFKQSNNNCYINVACLMLQHLSLKFPKWQWQEA 1740 Query 1670 YYRARAGDAANFCALILAYSNKTVGELGDVRETMTHLLQHANLESAKRVLNVVCKHCGQK 1729 + R+G F +L+LA + E D + M +L+ A+L A L VCK CG K Sbjct 1741 WNEFRSGKPLRFVSLVLAKGSFKFNEPSDSIDFMRVVLREADLSGATCNLEFVCK-CGVK 1799 Query 1730 TTTLKGVEAVMYMGTLSYDELKTGVSIPCVCGRNATQYLVQQESSFVMMSAPPAEYKLQQ 1789 KGV+AVM+ GTL +L G +I C CG + Q F++ S P KL Sbjct 1800 QEQRKGVDAVMHFGTLDKGDLVRGYNIACTCGSKLV-HCTQFNVPFLICSNTPEGRKLPD 1858 Query 1790 GAFLCANEYTGNYQCGHYTHITAKETLYRVDGAHLTKMSEYKGPVTDVFY-KETSYTTAI 1848 + AN +TG GHYTH+ K D ++ K+SE KG TD Y K T + Sbjct 1859 DV-VAANIFTGG-SVGHYTHVKCKPKYQLYDACNVNKVSEAKGNFTDCLYLKNLKQTFSS 1916 Query 1849 KPVSYKLDGVTYTEIEPKLDGYYKKGNAYYTEQPIDL-VPTQPMPNASFDNFKLTCSNTK 1907 ++ LD V E +P L YY + YYT+ I T + + NFKL Sbjct 1917 VLTTFYLDDVKCVEYKPDLSQYYCESGKYYTKPIIKAQFRTFEKVDGVYTNFKLV--GHS 1974 Query 1908 FADDLNQMTGFK-KPASRELTVTFFPDLNGDVVAIDYRHYSTSFKKGAKLVHKPILW--H 1964 A+ LN GF E +T +P GDVV Y + + G KP++W H Sbjct 1975 IAEKLNAKLGFDCNSPFVEYKITEWPTATGDVVLASDDLYVSRYSSGCITFGKPVVWLGH 2034 Query 1965 INQTTNKTTY--KPNIWCLRCLWSTKPVDTSNSFE------VLVVEDTQGMD-------- 2008 + TY +P++ C ++ PVD S + ++V G D Sbjct 2035 EEASLKSLTYFNRPSVVCEN-KFNVLPVDVSEPTDKGPVPAAVLVTGVPGADASAGAGIA 2093 Query 2009 --NLACESQTTTSE---EVVENPTVQ----KEIIECDVKT-TEVVGNVILKPSEEGVKVT 2058 AC S + + EV + P+V KE+ VK +V G+V++ KV Sbjct 2094 KEQKACASASVEDQVVTEVRQEPSVSAADVKEVKLNGVKKPVKVEGSVVVNDPTSETKVV 2153 Query 2059 QELGHEDLMAAYVEETSITIKKPNELSLALGLKTLATHGAAAINSV--PWSKIL------ 2110 + L D+ ++ + NELS + T+ + + + P +L Sbjct 2154 KSLSIVDVYDMFLTGCKYVVWTANELSRLVNSPTVREYVKWGMGKIVTPAKLLLLRDEKQ 2213 Query 2111 AYVKPFLGQTAVITSNCIKK-----CVQRVFSNYMPYVITLLFQLCTFTKSTNSRIKASL 2165 +V P + + I C K C + N VI +T S++ L Sbjct 2214 EFVAPKVVKAKAIACYCAVKWFLLYCFSWIKFNTDNKVI--------YTTEVASKLTFKL 2265 Query 2166 PTTIAKNSVKSVAKLCLDVCINY-VKSPKFSKLFTI-VMW--LLLLSICLGSL------- 2214 KN++++ N+ V S F + T+ ++W L ++ L Sbjct 2266 CCLAFKNALQT---------FNWSVVSRGFFLVATVFLLWFNFLYANVILSDFYLPNIGP 2316 Query 2215 --TYVTAVLGVCLSSLGVPSYCD--GVRELYINSSNVTTMDFCQGYFPCSVCLSGLDSLD 2270 T+V ++ ++ GV + CD V +L SS FC G C +C SG D LD Sbjct 2317 LPTFVGQIVAWFKTTFGVSTICDFYQVTDLGYRSS------FCNGSMVCELCFSGFDMLD 2370 Query 2271 SYPALETIQ-VTISSYKLD-LTFLGLAAEWLLAYMLFTKFFYLLGLSAIMQAFFGYFASH 2328 +Y A+ +Q V D ++ L E ++ Y L+T FY L + MQ + Sbjct 2371 NYDAINVVQHVVDRRLSFDYISLFKLVVELVIGYSLYTVCFYPLFVLIGMQLLTTWLPEF 2430 Query 2329 FISNS--WLMWFIISIVQMAPVSAMVRMYIFFASFYYVWKSYVHIMDGCTSSTCMMCYKR 2386 F+ + W + + M P ++R YI + Y V+ H+M GC+ C+ CYKR Sbjct 2431 FMLETMHWSARLFVFVANMLPAFTLLRFYIVVTAMYKVYCLCRHVMYGCSKPGCLFCYKR 2490 Query 2387 NRATRVECTTIVNGVKRSFYVYANGGRGFCKAHNWNCLNCDTFCAGSTFISDEVARDLSL 2446 NR+ RV+C+T+V G R + V ANGG GFC H WNCLNC+++ G+TFI+ E A DLS Sbjct 2491 NRSVRVKCSTVVGGSLRYYDVMANGGTGFCTKHQWNCLNCNSWKPGNTFITHEAAADLSK 2550 Query 2447 QFKRPINPTDQSAYVVDSVTVKNGALHLYFDKAGQKTYERHPLSHFVNLDNLRANNTKGS 2506 + KRP+NPTD + Y V V ++ L++++ GQ+ Y+ S FV+++ L + KG Sbjct 2551 ELKRPVNPTDSAYYSVTEVKQVGCSMRLFYERDGQRVYDDVNASLFVDMNGLLHSKVKGV 2610 Query 2507 LPINVIVFDGKSKCEESAAKSASVYYSQLMCQPILLLDQALVSDVGDSTEVSVKMFDAYV 2566 +V+V + ++ +++ A+V+Y+Q + +P+L++++ L++ VS MFD YV Sbjct 2611 PETHVVVVENEA--DKAGFLGAAVFYAQSLYRPMLMVEKKLITTANTGLSVSRTMFDLYV 2668 Query 2567 DTFSATFSVPMEKLKALVATAHSELAKGVALDGVLSTFVSAARQG-VVDTDVDTKDVIEC 2625 D+ V + L + V AH+ L +GV L+ V+ TF+ AR+ +D+DV+TK + + Sbjct 2669 DSLLNVLDVDRKSLTSFVNAAHNSLKEGVQLEQVMDTFIGCARRKCAIDSDVETKSITKS 2728 Query 2626 LKLSHHSDIEVTGDSCNNFMLTYNKVENMTPRDLGACIDCNARHINAQVAKSHNVSLVWN 2685 + + ++ ++ T +SCNN + TY K + + DLG I NA+H+ A VAK+ NV+ +W+ Sbjct 2729 VMSAVNAGVDFTDESCNNLVPTYVKSDTIVAADLGVLIQNNAKHVQANVAKAANVACIWS 2788 Query 2686 VKDYMSLSEQLRKQIRSAAKKNNIPFRLTCATTRQVVNVITTKISLKGGKVVSTWFKLLL 2745 V + LS L+ ++R A K + +LT V ++TT SLKGG V S + L Sbjct 2789 VDAFNQLSADLQHRLRKACSKTGLKIKLTYNKQEANVPILTTPFSLKGGAVFSRMLQWLF 2848 Query 2746 KVTLLCVLAALFCYVIMPVHSLSVHDGYTNEIIGYKAIQDGVTRDIVSTDDCFANKHAGF 2805 L+C + + +MP +++ D +K I +GV RD+ TD CFANK F Sbjct 2849 VANLICFIVL---WALMPTYAVHKSDMQLPLYASFKVIDNGVLRDVSVTDACFANKFNQF 2905 Query 2806 DSWFSQRGG--SYRNDKNCPVVAAIITREIGFIVPGLPGTVLRALNGDFLHFLPRVFSAV 2863 D W+ G YRN K CPVV A+I ++IG + +P TVLR LHF+ F+ Sbjct 2906 DQWYESTFGLAYYRNSKACPVVVAVIDQDIGHTLFNVPTTVLR-YGFHVLHFITHAFATD 2964 Query 2864 GNICYTPSKLIEYSDFATSACVLAAECTIFKDAMGKPVPYCYDTNLLEGSISYSELRPDT 2923 CYTP I Y +F S CVL++ CT+ A G P PYCY ++ + YS L P Sbjct 2965 SVQCYTPHMQIPYDNFYASGCVLSSLCTMLAHADGTPHPYCYTGGVMHNASLYSSLAPHV 3024 Query 2924 RYVLMDGS-IIQFPNTYLEGSVRVVTTFDAEYCRHGTCERSEVGVCLSTSGRWVLNNEHY 2982 RY L + I+FP EG VRVV T YCR G CE +E G+C + + WVLNN +Y Sbjct 3025 RYNLASSNGYIRFPEVVSEGIVRVVRTRSMTYCRVGLCEEAEEGICFNFNRSWVLNNPYY 3084 Query 2983 RALPGVFCGVDAMNLIANIFTPLVQPVGALDVSASVVAGGIIAILVTCAAYYFMKFRRAF 3042 RA+PG FCG +A +LI + LV+P+ ++AS VAG I+AI+V A YY +K +RAF Sbjct 3085 RAMPGTFCGRNAFDLIHQVLGGLVRPIDFFALTASSVAGAILAIIVVLAFYYLIKLKRAF 3144 Query 3043 GEYNHVVAANALLFLMSFTILCLAPAYSFLPGVYSIFYLYLTFYFTNDVSFLAHLQWFAM 3102 G+Y VV N +++ ++F +L + Y L +Y+ FY Y T YF +++S + HLQW M Sbjct 3145 GDYTSVVVINVIVWCINFLMLFVFQVYPTLSCLYACFYFYTTLYFPSEISVVMHLQWLVM 3204 Query 3103 FSPIVPFWITAIYVFCISLKHFHWFFSNYLKK---RVMFNGVTFSTFEEAALCTFLLNKE 3159 + I+P W IYV + H W FS Y +K V +G TFEE AL TF++ KE Sbjct 3205 YGAIMPLWFCIIYVAVVVSNHALWLFS-YCRKIGTEVRSDG----TFEEMALTTFMITKE 3259 Query 3160 MYLRLRSETLLPLTQYNRYLALYNKYKYFSGALDTTSYREAACCHLAKALNDFS-NSGAD 3218 Y +L++ + +NRYL+LYNKY+YFSG +DT +YREAAC LAKA+ F+ N+G D Sbjct 3260 SYCKLKNS--VSDVAFNRYLSLYNKYRYFSGKMDTAAYREAACSQLAKAMETFNHNNGND 3317 Query 3219 VLYQPPQTSITSAVLQSGFRKMAFPSGKVEGCMVQVTCGTTTLNGLWLDDTVYCPRHVVC 3278 VLYQPP S+T++ LQSG KM P+ KVE C+V VT G TLNGLWLDD VYCPRHV+C Sbjct 3318 VLYQPPTASVTTSFLQSGIVKMVSPTSKVEPCIVSVTYGNMTLNGLWLDDKVYCPRHVIC 3377 Query 3279 TAEDMLNPNYDDLLIRKSNHSFLVQAGNVQLRVIGHSMQNCLLRLKVDTSNPKTPKYKFV 3338 ++ DM +P+Y +LL R ++ F V +G + L V+ + MQ C L L V NP TPKY F Sbjct 3378 SSADMTDPDYPNLLCRVTSSDFCVMSGRMSLTVMSYQMQGCQLVLTVTLQNPNTPKYSFG 3437 Query 3339 RIQPGQTFSVLACYNGSPSGVYQCAMRPNHTIKGSFLNGSCGSVGFNIDYDCVSFCYMHH 3398 ++PG+TF+VLA YNG P G + +R +HTIKGSFL GSCGSVG+ + D V F YMH Sbjct 3438 VVKPGETFTVLAAYNGRPQGAFHVTLRSSHTIKGSFLCGSCGSVGYVLTGDSVRFVYMHQ 3497 Query 3399 MELPTGVHAGTDLEGKFYGPFVDRQTAQAAGTDTTITLNVLAWLYAAVINGDRWFLNRFT 3458 +EL TG H GTD G FYGP+ D Q Q D T T+NV+AWLYAA+ N WF+ + Sbjct 3498 LELSTGCHTGTDFSGNFYGPYRDAQVVQLPVQDYTQTVNVVAWLYAAIFNRCNWFVQSDS 3557 Query 3459 TTLNDFNLVAMKYNYEPLTQDHVDILGPLSAQTGIAVLDMCAALKELLQNGMNGRTILGS 3518 +L +FN+ AM + + D V L L++ TG+ V + AA+K L +G G+ ILGS Sbjct 3558 CSLEEFNVWAMTNGFSSIKADLV--LDALASMTGVTVEQVLAAIKR-LHSGFQGKQILGS 3614 Query 3519 TILEDEFTPFDVVRQCSGVTFQGKFKKIVKGTHHWMLLTFLTSLLILVQSTQWSLFFFVY 3578 +LEDE TP DV +Q +GV Q K +++KGT W+L + I+ +W++F +V Sbjct 3615 CVLEDE-TPSDVYQQLAGVKLQSKRTRVIKGTCCWILASTFLFCSIISAFVKWTMFMYVT 3673 Query 3579 ENAFLPFALGIMAVAAC----AMLLVKHKHAFLCLFLLPSLATVAYFNMVYMPASWVMRI 3634 + LG+ A C AMLL+KHKH +L ++++P L T +V S+ Sbjct 3674 TH-----MLGVTLCALCFVSFAMLLIKHKHLYLTMYIMPVLCTFYTNYLVVYKQSFRGLA 3728 Query 3635 MTWLELADTSLSGYRLKDCVMYASA-LVLLILMTARTVYDDAARRVWTLMNVITLVYKVY 3693 WL ++ Y D V+Y LV ++ +T R++ D ++ + +++LV Y Sbjct 3729 YAWLSHFVPAVD-YTYMDEVLYGVVLLVAMVFVTMRSINHDVFSIMFLVGRLVSLVSMWY 3787 Query 3694 YGNSLDQAISMWALVISVTSNYSGVVTTIMFLARAIVFVCVEYYPLLFITG-NTLQCIML 3752 +G +L++ + ++ + S+ Y+ TT++ LA A V +L+ T ++ ++L Sbjct 3788 FGANLEEEVLLF--LTSLFGTYTW--TTMLSLATAKVIAKWLAVNVLYFTDVPQIKLVLL 3843 Query 3753 VYCFLGYCCCCYFGLFCLLNRYFRLTLGVYDYLVSTQEFRYMNSQGLLPPKSSIDAFKLN 3812 Y +GY CCCY+G+ LLN FR+ LGVY+Y +S QE RYMN+ GL PP++S +A LN Sbjct 3844 SYLCIGYVCCCYWGILSLLNSIFRMPLGVYNYKISVQELRYMNANGLRPPRNSFEALMLN 3903 Query 3813 IKLLGIGGKPCIKVATVQSKMSDVKCTSVVLLSVLQQLRVESSSKLWAQCVQLHNDILLA 3872 KLLGIGG P I+V+ +QS+++DVKC +VVLL+ LQ L + S+SKLW C LHN+IL Sbjct 3904 FKLLGIGGVPVIEVSQIQSRLTDVKCANVVLLNCLQHLHIASNSKLWQYCSTLHNEILAT 3963 Query 3873 KDTTEAFEKMVSLLSVLLSMQGAVD------INKLCEEMLDNRATLQAIASEFSSLPSYA 3926 D + AF+K+ LL VL + AVD I ++ ++ + + LQA+ SEF ++ S+ Sbjct 3964 SDLSMAFDKLAQLLVVLFANPAAVDSKCLASIEEVSDDYVRDNTVLQALQSEFVNMASFV 4023 Query 3927 AYATAQEAYEQAVSNGDS-EVVLKKLKKSLNVAKSEFDHDAAMQRKLEKMADQAMTQMYK 3985 Y A++ ++A ++G + + +K+L+K+ N+AKS ++ D A+ RKLE+MAD A+T MYK Sbjct 4024 EYELAKKNLDEAKASGSANQQQIKQLEKACNIAKSAYERDRAVARKLERMADLALTNMYK 4083 Query 3986 QARSEDKRAKVTSAMQTMLFTMLRKLDNDALNNIINNARDGCVPLNIIPLTTAAKLMVVV 4045 +AR DK++KV SA+QTMLF+M+RKLDN ALN+I++NA GCVPLN IP T+ L ++V Sbjct 4084 EARINDKKSKVVSALQTMLFSMVRKLDNQALNSILDNAVKGCVPLNAIPSLTSNTLTIIV 4143 Query 4046 PDYGTYKNTCDGNTFTYASALWEIQQVVDADSKIVQLSEINMDNSPNLAWPLIVTALRAN 4105 PD + D TYA +W IQ + DAD + QL+EI++ N WPL++ A R N Sbjct 4144 PDKQVFDQVVDNVYVTYAGNVWHIQFIQDADGAVKQLNEIDV----NSTWPLVIAANRHN 4199 Query 4106 --SAVKLQNNELSPVALRQMSCAAGTTQTACTDDNALAYYNNAKGGRFVLALLSDHQDLK 4163 S V LQNNEL P LR +G+ T YYN G+ V A+LSD LK Sbjct 4200 EVSTVVLQNNELMPQKLRTQVVNSGSDMNCNTPTQ--CYYNTTGTGKIVYAILSDCDGLK 4257 Query 4164 WARFPKSDGTGTIYTELEPPCRFVTDTPKGPKVKYLYFIKGLNNLNRGMVLGSLAATVRL 4223 + + K DG + EL+PPC+F KG K+KYLYF+KG N L RG V+G+L++TVRL Sbjct 4258 YTKIVKEDGNCVV-LELDPPCKFSVQDVKGLKIKYLYFVKGCNTLARGWVVGTLSSTVRL 4316 Query 4224 QAGNATEVPANSTVLSFCAFAVDPAKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTP 4283 QAG ATE +NS +LS CAF+VDP K Y DY+ GG P+TNCVKMLC H GTG AIT+ P Sbjct 4317 QAGTATEYASNSAILSLCAFSVDPKKTYLDYIKQGGVPVTNCVKMLCDHAGTGMAITIKP 4376 Query 4284 EANMDQESFGGASCCLYCRCHIDHPNPKGFCDLKGKYVQIPTTCANDPVGFTLRNTVCTV 4343 EA +Q+S+GGAS C+YCR ++HP+ G C L+GK+VQ+P DPV + L + VC V Sbjct 4377 EATTNQDSYGGASVCIYCRSRVEHPDVDGLCKLRGKFVQVPLG-IKDPVSYVLTHDVCQV 4435 Query 4344 CGMWKGYGCSC 4354 CG W+ CSC Sbjct 4436 CGFWRDGSCSC 4446 Range 2: 1320 to 1474 Score:83.6 bits(205), Expect:6e-14, Method:Compositional matrix adjust., Identities:51/155(33%), Positives:80/155(51%), Gaps:2/155(1%) Query 1007 LTDNVAIKCIDIVKEAQSAKPTVIVNAANTHLKHGGGVAGALNKATNGAMQNESDEYIRQ 1066 +T NV D++K + VIVN AN + HG GVAGA+ + A E+ + ++ Sbjct 1320 ITPNVCFVKGDVIKVVRLVNAEVIVNPANGRMAHGAGVAGAIAEKAGSAFIKETSDMVKA 1379 Query 1067 NGPLTVGGSCLLSGHNLAEKCLHVVGPNL--NAGEDVQLLKRAYENFNSQDVLLAPLLSA 1124 G VG +G L +K L++VGP+ + + LL+RAY++ N D ++ L+SA Sbjct 1380 QGVCQVGECYESAGGKLCKKVLNIVGPDARGHGKQCYSLLERAYQHINKCDNVVTTLISA 1439 Query 1125 GIFGAKPLQSLKMCVEIVRTQVYLAVNDKSLYDQI 1159 GIF SL + +V V L N++ +D I Sbjct 1440 GIFSVPTDVSLTYLLGVVTKNVILVSNNQDDFDVI 1474 Range 3: 577 to 964 Score:73.6 bits(179), Expect:6e-11, Method:Compositional matrix adjust., Identities:99/404(25%), Positives:173/404(42%), Gaps:48/404(11%) Query 570 LDGISEQSLRLVDA-------MVYTSDLLTNSVVVMAYVTGGLVQQTMQWLSNMLGTAVD 622 LDG+ +S L+ + MV S +T+ + MA + V+ +++ + G Sbjct 577 LDGLVPRSYYLIKSGQAFTSMMVNFSHEVTDMCMDMALLFMHDVKVATKYVKKVTGKLAV 636 Query 623 KLKPVFTWVEAKLSAGVEFLRD------AWEILKFLITGVFDVIKGQIQVATDNIKECVK 676 + K + V K++ + D W + L+ G+F V G I + + E VK Sbjct 637 RFKALGVAVVRKITEWFDLAVDIAASAAGWLCYQ-LVNGLFAVANGVITFVQE-VPELVK 694 Query 677 IFLGVVNKALEMCLDQVTIA---GTKLRALNLGEVFIAQSRGLYRQCIRGKEQLQLLMPL 733 F+ ++ +D ++++ G + V +A S+ +Y + K +MP+ Sbjct 695 NFVDKFKAFFKVLIDSMSVSILSGLTVVKTASNRVCLAGSK-VYE--VVQKSLSAYVMPV 751 Query 734 KAPKEVTFLEGDAHDTVLTSEEVVLKSGEL--EALETPIDSFTSGAVVGT---PVCINGL 788 E T L G+ V + V + L + P SF +V C + Sbjct 752 GC-SEATCLVGEIEPAVFEDDVVDVVKAPLTYQGCCKPPTSFEKICIVDKLYMAKCGDQF 810 Query 789 MLLELENKEQYCALSPGLLATNNVFRLKGGAPVKGVTFGED-TVLEVQGYKNVKITFELD 847 + ++N + G+L F G K V F + V ++ + +KITF LD Sbjct 811 YPVVVDND------TVGVLDQCWRFPCAG----KKVEFNDKPKVRKIPSTRKIKITFALD 860 Query 848 VRVDKVLNEKCSVYTVESGTEVTEFACVVAEAVVKTLQPVSD---LLTPMGIDLDEWSVA 904 D VL++ CS + V+ + E VV +AV TL P + + T + LD + Sbjct 861 ATFDSVLSKACSEFEVDKDVTLDELLDVVLDAVESTLSPCKEHDVIGTKVCALLDRLAGD 920 Query 905 TFYLFDDAGEEKLSSRMYCSFYPPDEEE-------DCEECEDEE 941 YLFD+ G+E ++ RMYCSF PD+E+ D +E +D++ Sbjct 921 YVYLFDEGGDEVIAPRMYCSFSAPDDEDCVAADVVDADENQDDD 964 >RecName: Full=Replicase polyprotein 1a; Short=pp1a; AltName: Full=ORF1a polyprotein; Contains: RecName: Full=Non-structural protein 1; Short=nsp1; AltName: Full=p28; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p65; Contains: RecName: Full=Papain-like protease nsp3; Short=PL-PRO; AltName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=PL1-PRO/PL2-PRO; AltName: Full=PL1/PL2; AltName: Full=PL2-PRO; AltName: Full=Papain-like proteinases 1/2; AltName: Full=p210; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; AltName: Full=Peptide HD2; AltName: Full=p44; Contains: RecName: Full=3C-like proteinase nsp5; Short=3CL-PRO; Short=3CLp; AltName: Full=M-PRO; AltName: Full=nsp5; AltName: Full=p27; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; AltName: Full=p10; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; AltName: Full=p22; Contains: RecName: Full=RNA-capping enzyme subunit nsp9; AltName: Full=Non-structural protein 9; Short=nsp9; AltName: Full=p12; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; AltName: Full=p15; Contains: RecName: Full=Non-structural protein 11; Short=nsp11 [Murine hepatitis virus strain JHM] Sequence ID: P0C6V1.1 Length: 4474 Range 1: 1582 to 4472 Score:1841 bits(4769), Expect:0.0, Method:Compositional matrix adjust., Identities:1101/2965(37%), Positives:1619/2965(54%), Gaps:162/2965(5%) Query 1500 RGDKIVYHTTGSPIEFHLDGEVLPLDKLKSLLSLREVKTIKVFTTVDNTNLHTHIVDMSM 1559 +G K Y GS E + ++++LL+ + V TVD N + V Sbjct 1582 QGKKFGYVQNGSFKE-------ASVSQIRALLA----NKVDVLCTVDGVNFRSCCVAEGE 1630 Query 1560 TYGQQFGPTYLDGADVTKIKPHVNHEGKTFFVLPSDDTLRSEAFEYYHTIDESFLGRYMS 1619 +G+ G + DG +VTK++ H+GK FF A + DE L +Y S Sbjct 1631 VFGKTLGSVFCDGINVTKVRCSAIHKGKVFFQYSGLSAADLAAVKDAFGFDEPQLLQYYS 1690 Query 1620 ALNHTKKWKFPQVGGLTSIKWADNNCYLSSVLLALQQVEVKFNAPALQEAYYRARAGDAA 1679 L K W G + K ++NNCY++ L LQ + +KF + R+G Sbjct 1691 MLGMCK-WPVVVCGNYFAFKQSNNNCYINVACLMLQHLSLKFPKWQWRRPGNEFRSGKPL 1749 Query 1680 NFCALILAYSNKTVGELGDVRETMTHLLQHANLESAKRVLNVVCKHCGQKTTTLKGVEAV 1739 F +L+LA + E D + + L+ A+L A L +CK CG K KGV+AV Sbjct 1750 RFVSLVLAKGSFKFNEPSDSTDFIRVELREADLSGATCDLEFICK-CGVKQEQRKGVDAV 1808 Query 1740 MYMGTLSYDELKTGVSIPCVCGRNATQYLVQQESSFVMMSAPPAEYKLQQGAFLCANEYT 1799 M+ GTL L G +I C CG + + Q F++ S P KL + AN +T Sbjct 1809 MHFGTLDKSGLVKGYNIACTCG-DKLVHCTQFNVPFLICSNTPEGKKLPDDV-VAANIFT 1866 Query 1800 GNYQCGHYTHITAKETLYRVDGAHLTKMSEYKGPVTDVFY-KETSYTTAIKPVSYKLDGV 1858 G GHYTH+ K D +++K+SE KG TD Y K T + +Y LD V Sbjct 1867 GG-SVGHYTHVKCKPKYQLYDACNVSKVSEAKGNFTDCLYLKNLKQTFSSVLTTYYLDDV 1925 Query 1859 TYTEIEPKLDGYYKKGNAYYTEQPIDL-VPTQPMPNASFDNFKLTCSNTKFADDLNQMTG 1917 +P L YY + YYT+ I T + NFKL A+ LN G Sbjct 1926 KCVAYKPDLSQYYCESGKYYTKPIIKAQFRTFEKVEGVYTNFKLV--GHDIAEKLNAKLG 1983 Query 1918 FK-KPASRELTVTFFPDLNGDVVAIDYRHYSTSFKKGAKLVHKPILW--HINQTTNKTTY 1974 F E +T +P GDVV Y + + G KP++W H + TY Sbjct 1984 FDCNSPFMEYKITEWPTATGDVVLASDDLYVSRYSGGCVTFGKPVIWRGHEEASLKSLTY 2043 Query 1975 --KPNIWCLRCLWSTKPVDTSNSFE-------VLVV-------------EDTQGMDNLAC 2012 +P++ C ++ PVD S + VLV E + AC Sbjct 2044 FNRPSVVCEN-KFNVLPVDVSEPTDRRPVPSAVLVTGAASGADASAISTEPGTAKEQKAC 2102 Query 2013 ESQTTTSEEVVENPTVQKEIIECDVKTTEVVGNVILKPSE-----------EGVKVTQEL 2061 S + + V+E QK+ V EV N + KP + KV + L Sbjct 2103 ASDSVEDQIVME---AQKKSSVTTVAVKEVKLNGVKKPVKWNCSVVVNDPTSETKVVKSL 2159 Query 2062 GHEDLMAAYVEETSITIKKPNELSLALGLKTLATHGAAAINS--VPWSKIL------AYV 2113 D+ ++ + NELS + T+ + ++ +P + +L +V Sbjct 2160 SIVDVYDMFLTGCRYVVWTANELSRLINSPTVREYVKWGMSKLIIPANLLLLRDEKQEFV 2219 Query 2114 KP-FLGQTAVITSNCIKKCVQRVFSNYMPYVITLLFQLCTFTKSTNSRIKASLPTTIAKN 2172 P + A+ +K + FS ++ +T S++ L KN Sbjct 2220 APKVVKAKAIACYGAVKWFLLYCFS----WIKFNTDNKVIYTTEVASKLTFKLCCLAFKN 2275 Query 2173 SVKSVAKLCLDVCINY-VKSPKFSKLFTI-VMWL--LLLSICLGSL---------TYVTA 2219 ++++ N+ V S F + T+ ++W L ++ L +V Sbjct 2276 ALQT---------FNWSVVSRGFFLVATVFLLWFNFLYANVILSDFYLPNIGPLPMFVGQ 2326 Query 2220 VLGVCLSSLGVPSYCD--GVRELYINSSNVTTMDFCQGYFPCSVCLSGLDSLDSYPALET 2277 ++ ++ GV + CD V +L SS FC G C +C SG D LD+Y ++ Sbjct 2327 IVAWVKTTFGVLTICDFYQVTDLGYRSS------FCNGSMVCELCFSGFDMLDNYESINV 2380 Query 2278 IQ-VTISSYKLD-LTFLGLAAEWLLAYMLFTKFFYLLGLSAIMQAFFGYFASHFISNS-- 2333 +Q V D ++ L E ++ Y L+T FY L + MQ + F+ + Sbjct 2381 VQHVVDRRVSFDYISLFKLVVELVIGYSLYTVCFYPLFVLVGMQLLTTWLPEFFMLGTMH 2440 Query 2334 WLMWFIISIVQMAPVSAMVRMYIFFASFYYVWKSYVHIMDGCTSSTCMMCYKRNRATRVE 2393 W + + M P ++R YI + Y V+ H+M GC+ C+ CYKRNR+ RV+ Sbjct 2441 WSARLFVFVANMLPAFTLLRFYIVVTAMYKVYCLCRHVMYGCSKPGCLFCYKRNRSVRVK 2500 Query 2394 CTTIVNGVKRSFYVYANGGRGFCKAHNWNCLNCDTFCAGSTFISDEVARDLSLQFKRPIN 2453 C+T+V G R + V ANGG GFC H WNCLNC+++ G+TFI+ E A DLS + KRP+N Sbjct 2501 CSTVVGGSLRYYDVMANGGTGFCTKHQWNCLNCNSWKPGNTFITHEAAADLSKELKRPVN 2560 Query 2454 PTDQSAYVVDSVTVKNGALHLYFDKAGQKTYERHPLSHFVNLDNLRANNTKGSLPINVIV 2513 PTD + Y V V ++ L++++ GQ+ Y+ S FV+++ L + KG +V+V Sbjct 2561 PTDSAYYSVIEVKQVGCSMRLFYERDGQRVYDDVSASLFVDMNGLLHSKVKGVPETHVVV 2620 Query 2514 FDGKSKCEESAAKSASVYYSQLMCQPILLLDQALVSDVGDSTEVSVKMFDAYVDTFSATF 2573 + ++ +++ +A+V+Y+Q + +P+L++++ L++ VS MFD YV + Sbjct 2621 VENEA--DKAGFLNAAVFYAQSLYRPMLMVEKKLITTANTGLSVSRTMFDLYVYSLLRHL 2678 Query 2574 SVPMEKLKALVATAHSELAKGVALDGVLSTFVSAARQG-VVDTDVDTKDVIECLKLSHHS 2632 V + L + V AH+ L +GV L+ V+ TFV AR+ +D+DV+TK + + + + ++ Sbjct 2679 DVDRKSLTSFVNAAHNSLKEGVQLEQVMDTFVGCARRKCAIDSDVETKSITKSVMAAVNA 2738 Query 2633 DIEVTGDSCNNFMLTYNKVENMTPRDLGACIDCNARHINAQVAKSHNVSLVWNVKDYMSL 2692 +EVT +SCNN + TY K + + DLG I NA+H+ + VAK+ NV+ +W+V + L Sbjct 2739 GVEVTDESCNNLVPTYVKSDTIVAADLGVLIQNNAKHVQSNVAKAANVACIWSVDAFNQL 2798 Query 2693 SEQLRKQIRSAAKKNNIPFRLTCATTRQVVNVITTKISLKGGKVVSTWFKLLLKVTLLCV 2752 S L+ ++R A K + +LT V ++TT SLKGG V S + L L+C Sbjct 2799 SADLQHRLRKACVKTGLKIKLTYNKQEANVPILTTPFSLKGGAVFSRVLQWLFVANLICF 2858 Query 2753 LAALFCYVIMPVHSLSVHDGYTNEIIGYKAIQDGVTRDIVSTDDCFANKHAGFDSWFSQR 2812 + + +MP +++ D +K I +GV RD+ TD CFANK FD W+ Sbjct 2859 IVL---WALMPTYAVHKSDMQLPLYASFKVIDNGVLRDVSVTDACFANKFNQFDQWYEST 2915 Query 2813 GG--SYRNDKNCPVVAAIITREIGFIVPGLPGTVLRALNGDFLHFLPRVFSAVGNICYTP 2870 G YRN K CPVV A+I ++IG + +P VLR LHF+ F+ CYTP Sbjct 2916 FGLVYYRNSKACPVVVAVIDQDIGHTLFNVPTKVLR-YGFHVLHFITHAFATDRVQCYTP 2974 Query 2871 SKLIEYSDFATSACVLAAECTIFKDAMGKPVPYCYDTNLLEGSISYSELRPDTRYVLMDG 2930 I Y +F S CVL++ CT+ A G P PYCY ++ + YS L P RY L Sbjct 2975 HMQIPYDNFYASGCVLSSLCTMLAHADGTPHPYCYTEGVMHNASLYSSLVPHVRYNLASS 3034 Query 2931 S-IIQFPNTYLEGSVRVVTTFDAEYCRHGTCERSEVGVCLSTSGRWVLNNEHYRALPGVF 2989 + I+FP EG VRVV T YCR G CE +E G+C + + WVLNN +YRA+PG F Sbjct 3035 NGYIRFPEVVSEGIVRVVRTRSMTYCRVGLCEEAEEGICFNFNSSWVLNNPYYRAMPGTF 3094 Query 2990 CGVDAMNLIANIFTPLVQPVGALDVSASVVAGGIIAILVTCAAYYFMKFRRAFGEYNHVV 3049 CG +A +LI + LVQP+ ++AS VAG I+AI+V A YY +K +RAFG+Y VV Sbjct 3095 CGRNAFDLIHQVLGGLVQPIDFFALTASSVAGAILAIIVVLAFYYLIKLKRAFGDYTSVV 3154 Query 3050 AANALLFLMSFTILCLAPAYSFLPGVYSIFYLYLTFYFTNDVSFLAHLQWFAMFSPIVPF 3109 N +++ ++F +L + Y L +Y+ FY Y T YF +++S + HLQW M+ I+P Sbjct 3155 VINVIVWCINFLMLFVFQVYPTLSCLYACFYFYTTLYFPSEISVVMHLQWLVMYGAIMPL 3214 Query 3110 WITAIYVFCISLKHFHWFFSNYLKKRVMFNGVTFSTFEEAALCTFLLNKEMYLRLRSETL 3169 W YV + H W FS Y +K + + + TFEE AL TF++ KE Y +L++ Sbjct 3215 WFCITYVAVVVSNHALWLFS-YCRK-IGTDVRSDGTFEEMALTTFMITKESYCKLKNS-- 3270 Query 3170 LPLTQYNRYLALYNKYKYFSGALDTTSYREAACCHLAKALNDFS-NSGADVLYQPPQTSI 3228 + +NRYL+LYNKY+YFSG +DT +YREAAC LAKA+ F+ N+G DVLYQPP S+ Sbjct 3271 VSDVAFNRYLSLYNKYRYFSGKMDTATYREAACSQLAKAMETFNHNNGNDVLYQPPTASV 3330 Query 3229 TSAVLQSGFRKMAFPSGKVEGCMVQVTCGTTTLNGLWLDDTVYCPRHVVCTAEDMLNPNY 3288 T++ LQSG KM P+ KVE C+V VT G TLNGLWLDD VYCPRHV+C++ DM +P+Y Sbjct 3331 TTSFLQSGIVKMVSPTSKVEPCVVSVTYGNMTLNGLWLDDKVYCPRHVICSSADMTDPDY 3390 Query 3289 DDLLIRKSNHSFLVQAGNVQLRVIGHSMQNCLLRLKVDTSNPKTPKYKFVRIQPGQTFSV 3348 +LL R ++ F V + + L V+ + MQ LL L V NP TPKY F ++PG+TF+V Sbjct 3391 PNLLCRVTSSDFCVMSDRMSLTVMSYQMQGSLLVLTVTLQNPNTPKYSFGVVKPGETFTV 3450 Query 3349 LACYNGSPSGVYQCAMRPNHTIKGSFLNGSCGSVGFNIDYDCVSFCYMHHMELPTGVHAG 3408 LA YNG P G + MR +HTIKGSFL GSCGSVG+ + D V F YMH +EL TG H G Sbjct 3451 LAAYNGRPQGAFHVVMRSSHTIKGSFLCGSCGSVGYVLTGDSVRFVYMHQLELSTGCHTG 3510 Query 3409 TDLEGKFYGPFVDRQTAQAAGTDTTITLNVLAWLYAAVINGDRWFLNRFTTTLNDFNLVA 3468 TD G FYGP+ D Q Q D T T+NV+AWLYAA++N WF+ + +L +FN+ A Sbjct 3511 TDFSGNFYGPYRDAQVVQLPVQDYTQTVNVVAWLYAAILNRCNWFVQSDSCSLEEFNVWA 3570 Query 3469 MKYNYEPLTQDHVDILGPLSAQTGIAVLDMCAALKELLQNGMNGRTILGSTILEDEFTPF 3528 M + + D V L L++ TG+ V + AA+K L +G G+ ILGS +LEDE TP Sbjct 3571 MTNGFSSIKADLV--LDALASMTGVTVEQVLAAIKR-LHSGFQGKQILGSCVLEDELTPS 3627 Query 3529 DVVRQCSGVTFQGKFKKIVKGTHHWMLLTFLTSLLILVQSTQWSLFFFVYENAFLPFALG 3588 DV +Q +GV Q K +++KGT W+L + I+ +W++F +V + LG Sbjct 3628 DVYQQLAGVKLQSKRTRVIKGTCCWILASTFLFCSIISAFVKWTMFMYVTTH-----MLG 3682 Query 3589 IMAVAAC----AMLLVKHKHAFLCLFLLPSLATVAYFNMVYMPASWVMRIM--TWLELAD 3642 + A C AMLL+KHKH +L ++++P L T+ Y N + + R + WL Sbjct 3683 VTLCALCFVIFAMLLIKHKHLYLTMYIMPVLCTLFYTNYLVVGYKQSFRGLAYAWLSYFV 3742 Query 3643 TSLSGYRLKDCVMYASA-LVLLILMTARTVYDDAARRVWTLMNVITLVYKVYYGNSLDQA 3701 ++ Y D V+Y LV ++ +T R++ D ++ + +++LV Y+G +L++ Sbjct 3743 PAVD-YTYMDEVLYGVVLLVAMVFVTMRSINHDVFSTMFLVGRLVSLVSMWYFGANLEEE 3801 Query 3702 ISMWALVISVTSNYSGVVTTIMFLARAIVFVCVEYYPLLFITG-NTLQCIMLVYCFLGYC 3760 + ++ + S+ Y+ TT++ LA A V +L+ T ++ ++L Y +GY Sbjct 3802 VLLF--LTSLFGTYTW--TTMLSLATAKVIAKWLAVNVLYFTDIPQIKLVLLSYLCIGYV 3857 Query 3761 CCCYFGLFCLLNRYFRLTLGVYDYLVSTQEFRYMNSQGLLPPKSSIDAFKLNIKLLGIGG 3820 CCCY+G+ LLN FR+ LGVY+Y +S QE RYMN+ GL PP++S +A LN KLLGIGG Sbjct 3858 CCCYWGVLSLLNSIFRMPLGVYNYKISVQELRYMNANGLRPPRNSFEALMLNFKLLGIGG 3917 Query 3821 KPCIKVATVQSKMSDVKCTSVVLLSVLQQLRVESSSKLWAQCVQLHNDILLAKDTTEAFE 3880 P I+V+ +QS+++DVKC +VVLL+ LQ L + S+SKLW C LHN+IL D + AF+ Sbjct 3918 VPVIEVSQIQSRLTDVKCANVVLLNCLQHLHIASNSKLWQYCSTLHNEILATSDLSVAFD 3977 Query 3881 KMVSLLSVLLSMQGAVD------INKLCEEMLDNRATLQAIASEFSSLPSYAAYATAQEA 3934 K+ LL VL + AVD I ++ ++ + + LQA+ SEF ++ S+ Y A++ Sbjct 3978 KLAQLLVVLFANPAAVDSKCLASIEEVSDDYVRDNTVLQALQSEFVNMASFVEYELAKKN 4037 Query 3935 YEQAVSNGDS-EVVLKKLKKSLNVAKSEFDHDAAMQRKLEKMADQAMTQMYKQARSEDKR 3993 ++A ++G + + +K+L+K+ N+AKS ++ D A+ RKLE+MAD A+T MYK+AR DK+ Sbjct 4038 LDEAKASGSANQQQIKQLEKACNIAKSAYERDRAVARKLERMADLALTNMYKEARINDKK 4097 Query 3994 AKVTSAMQTMLFTMLRKLDNDALNNIINNARDGCVPLNIIPLTTAAKLMVVVPDYGTYKN 4053 +KV SA+QTMLF+M+RKLDN ALN+I++NA GCVPLN IP T+ L ++VPD + Sbjct 4098 SKVVSALQTMLFSMVRKLDNQALNSILDNAVKGCVPLNAIPPLTSNTLTIIVPDKQVFDQ 4157 Query 4054 TCDGNTFTYASALWEIQQVVDADSKIVQLSEINMDNSPNLAWPLIVTALRAN--SAVKLQ 4111 D TYA +W IQ + DAD + QL+EI+++++ WPL+++A R N S V LQ Sbjct 4158 VVDNVYVTYAPNVWHIQSIQDADGAVKQLNEIDVNST----WPLVISANRHNEVSTVVLQ 4213 Query 4112 NNELSPVALRQMSCAAGTTQTACTDDNALAYYNNAKGGRFVLALLSDHQDLKWARFPKSD 4171 NNEL P LR +G+ + YYN G+ V A+LSD LK+ + K D Sbjct 4214 NNELMPQKLRTQVVNSGSDMNC--NIPTQCYYNTTGTGKIVYAILSDCDGLKYTKIVKED 4271 Query 4172 GTGTIYTELEPPCRFVTDTPKGPKVKYLYFIKGLNNLNRGMVLGSLAATVRLQAGNATEV 4231 G + EL+PPC+F KG K+KYLYF+KG N L RG V+G+L++TVRLQAG ATE Sbjct 4272 GNCVV-LELDPPCKFSVQDVKGLKIKYLYFVKGCNTLARGWVVGTLSSTVRLQAGTATEY 4330 Query 4232 PANSTVLSFCAFAVDPAKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPEANMDQES 4291 +NS +LS CAF+VDP K Y DY+ GG P+TNCVKMLC H GTG AIT+ PEA +Q+S Sbjct 4331 ASNSAILSLCAFSVDPKKTYLDYIQQGGVPVTNCVKMLCDHAGTGMAITIKPEATTNQDS 4390 Query 4292 FGGASCCLYCRCHIDHPNPKGFCDLKGKYVQIPTTCANDPVGFTLRNTVCTVCGMWKGYG 4351 +GGAS C+YCR ++HP+ G C L+GK+VQ+P DPV + L + VC VCG W+ Sbjct 4391 YGGASVCIYCRSRVEHPDVDGLCKLRGKFVQVPLG-IKDPVSYVLTHDVCQVCGFWRDGS 4449 Query 4352 CSCDQLREPMMQSADASTFLNGFAV 4376 CSC QS D + FLNGF V Sbjct 4450 CSCVGTGS-QFQSKD-TNFLNGFGV 4472 Range 2: 834 to 947 Score:70.9 bits(172), Expect:3e-10, Method:Compositional matrix adjust., Identities:44/114(39%), Positives:61/114(53%), Gaps:4/114(3%) Query 822 KGVTFGED-TVLEVQGYKNVKITFELDVRVDKVLNEKCSVYTVESGTEVTEFACVVAEAV 880 K V F + V EV + +KI F LD D VL++ CS + V+ + E VV +AV Sbjct 834 KKVVFNDKPKVKEVPSTRKIKIIFALDATFDSVLSKACSEFEVDKDVTLDELLDVVLDAV 893 Query 881 VKTLQPVSD---LLTPMGIDLDEWSVATFYLFDDAGEEKLSSRMYCSFYPPDEE 931 TL P + + T + L+ YLFD+ GEE ++SRMYCSF PDE+ Sbjct 894 ESTLSPCKEHGVIGTKVCALLERLVDDYVYLFDEGGEEVIASRMYCSFSAPDED 947 Range 3: 1319 to 1473 Score:67.0 bits(162), Expect:5e-09, Method:Compositional matrix adjust., Identities:56/155(36%), Positives:83/155(53%), Gaps:2/155(1%) Query 1007 LTDNVAIKCIDIVKEAQSAKPTVIVNAANTHLKHGGGVAGALNKATNGAMQNESDEYIRQ 1066 +T NV D++K + VIVN AN + HG GVAGA+ KA A NE+ + ++ Sbjct 1319 ITPNVCFVKGDVIKVLRRVGAEVIVNPANGRMAHGAGVAGAIAKAAGKAFINETADMVKA 1378 Query 1067 NGPLTVGGSCLLSGHNLAEKCLHVVGPNL--NAGEDVQLLKRAYENFNSQDVLLAPLLSA 1124 G VGG +G L +K L++VGP+ + E LL+RAY++ N D ++ L+SA Sbjct 1379 QGVCQVGGCYESTGGKLCKKVLNIVGPDARGHGNECYSLLERAYQHINKCDNVVTTLISA 1438 Query 1125 GIFGAKPLQSLKMCVEIVRTQVYLAVNDKSLYDQI 1159 GIF SL + +V V L N++ +D I Sbjct 1439 GIFSVPTDVSLTYLLGVVTKNVILVSNNQDDFDVI 1473 >RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Host translation inhibitor nsp1; Short=nsp1; AltName: Full=p28; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p65; Contains: RecName: Full=Papain-like proteinase nsp3; Short=PL-PRO; AltName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=p210; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; AltName: Full=Peptide HD2; AltName: Full=p44; Contains: RecName: Full=3C-like proteinase nsp5; Short=3CL-PRO; Short=3CLp; AltName: Full=M-PRO; AltName: Full=nsp5; AltName: Full=p27; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; AltName: Full=p10; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; AltName: Full=p22; Contains: RecName: Full=Viral protein genome-linked nsp9; AltName: Full=Non-structural protein 9; Short=nsp9; AltName: Full=RNA-capping enzyme subunit nsp9; AltName: Full=p12; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; AltName: Full=p15; Contains: RecName: Full=RNA-directed RNA polymerase nsp12; Short=Pol; Short=RdRp; AltName: Full=nsp12; AltName: Full=p100; Contains: RecName: Full=Helicase nsp13; Short=Hel; AltName: Full=nsp13; AltName: Full=p67; Contains: RecName: Full=Guanine-N7 methyltransferase nsp14; Short=ExoN; AltName: Full=nsp14; Contains: RecName: Full=Uridylate-specific endoribonuclease nsp15; AltName: Full=NendoU; AltName: Full=nsp15; AltName: Full=p35; Contains: RecName: Full=2'-O-methyl transferase nsp16; AltName: Full=nsp16 [Murine hepatitis virus strain JHM] Sequence ID: P0C6Y0.1 Length: 7180 Range 1: 1582 to 4452 Score:1837 bits(4757), Expect:0.0, Method:Compositional matrix adjust., Identities:1095/2942(37%), Positives:1606/2942(54%), Gaps:158/2942(5%) Query 1500 RGDKIVYHTTGSPIEFHLDGEVLPLDKLKSLLSLREVKTIKVFTTVDNTNLHTHIVDMSM 1559 +G K Y GS E + ++++LL+ + V TVD N + V Sbjct 1582 QGKKFGYVQNGSFKE-------ASVSQIRALLA----NKVDVLCTVDGVNFRSCCVAEGE 1630 Query 1560 TYGQQFGPTYLDGADVTKIKPHVNHEGKTFFVLPSDDTLRSEAFEYYHTIDESFLGRYMS 1619 +G+ G + DG +VTK++ H+GK FF A + DE L +Y S Sbjct 1631 VFGKTLGSVFCDGINVTKVRCSAIHKGKVFFQYSGLSAADLAAVKDAFGFDEPQLLQYYS 1690 Query 1620 ALNHTKKWKFPQVGGLTSIKWADNNCYLSSVLLALQQVEVKFNAPALQEAYYRARAGDAA 1679 L K W G + K ++NNCY++ L LQ + +KF + R+G Sbjct 1691 MLGMCK-WPVVVCGNYFAFKQSNNNCYINVACLMLQHLSLKFPKWQWRRPGNEFRSGKPL 1749 Query 1680 NFCALILAYSNKTVGELGDVRETMTHLLQHANLESAKRVLNVVCKHCGQKTTTLKGVEAV 1739 F +L+LA + E D + + L+ A+L A L +CK CG K KGV+AV Sbjct 1750 RFVSLVLAKGSFKFNEPSDSTDFIRVELREADLSGATCDLEFICK-CGVKQEQRKGVDAV 1808 Query 1740 MYMGTLSYDELKTGVSIPCVCGRNATQYLVQQESSFVMMSAPPAEYKLQQGAFLCANEYT 1799 M+ GTL L G +I C CG + + Q F++ S P KL + AN +T Sbjct 1809 MHFGTLDKSGLVKGYNIACTCG-DKLVHCTQFNVPFLICSNTPEGKKLPDDV-VAANIFT 1866 Query 1800 GNYQCGHYTHITAKETLYRVDGAHLTKMSEYKGPVTDVFY-KETSYTTAIKPVSYKLDGV 1858 G GHYTH+ K D +++K+SE KG TD Y K T + +Y LD V Sbjct 1867 GG-SVGHYTHVKCKPKYQLYDACNVSKVSEAKGNFTDCLYLKNLKQTFSSVLTTYYLDDV 1925 Query 1859 TYTEIEPKLDGYYKKGNAYYTEQPIDL-VPTQPMPNASFDNFKLTCSNTKFADDLNQMTG 1917 +P L YY + YYT+ I T + NFKL + A+ LN G Sbjct 1926 KCVAYKPDLSQYYCESGKYYTKPIIKAQFRTFEKVEGVYTNFKLVGHD--IAEKLNAKLG 1983 Query 1918 FK-KPASRELTVTFFPDLNGDVVAIDYRHYSTSFKKGAKLVHKPILW--HINQTTNKTTY 1974 F E +T +P GDVV Y + + G KP++W H + TY Sbjct 1984 FDCNSPFMEYKITEWPTATGDVVLASDDLYVSRYSGGCVTFGKPVIWRGHEEASLKSLTY 2043 Query 1975 --KPNIWCLRCLWSTKPVDTSNSFE-------VLVV-------------EDTQGMDNLAC 2012 +P++ C ++ PVD S + VLV E + AC Sbjct 2044 FNRPSVVCEN-KFNVLPVDVSEPTDRRPVPSAVLVTGAASGADASAISTEPGTAKEQKAC 2102 Query 2013 ESQTTTSEEVVENPTVQKEIIECDVKTTEVVGNVILKPSE-----------EGVKVTQEL 2061 S + + V+E QK+ V EV N + KP + KV + L Sbjct 2103 ASDSVEDQIVME---AQKKSSVTTVAVKEVKLNGVKKPVKWNCSVVVNDPTSETKVVKSL 2159 Query 2062 GHEDLMAAYVEETSITIKKPNELSLALGLKTLATHGAAAINSVPW--SKILAYVKPFLGQ 2119 D+ ++ + NELS + T+ + V W SK++ L + Sbjct 2160 SIVDVYDMFLTGCRYVVWTANELSRLINSPTVREY-------VKWGMSKLIIPANLLLLR 2212 Query 2120 TAVITSNCIKKCVQRVFSNYMPYVITLLFQLCTFTKSTNSRIKASLPTTIAKNSVKSVAK 2179 K + + Y LL+ +T++++ + T +A K K Sbjct 2213 DEKQEFVAPKVVKAKAIACYGAVKWFLLYCFSWIKFNTDNKVIYT--TEVAS---KLTFK 2267 Query 2180 LCLDVCINYVKSPKFS---KLFTIVMWLLLL-------SICLGSL---------TYVTAV 2220 LC N +++ +S + F +V + LL ++ L +V + Sbjct 2268 LCCLAFKNALQTFNWSVVSRGFFLVATVFLLWFNFLYANVILSDFYLPNIGPLPMFVGQI 2327 Query 2221 LGVCLSSLGVPSYCD--GVRELYINSSNVTTMDFCQGYFPCSVCLSGLDSLDSYPALETI 2278 + ++ GV + CD V +L SS FC G C +C SG D LD+Y ++ + Sbjct 2328 VAWVKTTFGVLTICDFYQVTDLGYRSS------FCNGSMVCELCFSGFDMLDNYESINVV 2381 Query 2279 Q-VTISSYKLD-LTFLGLAAEWLLAYMLFTKFFYLLGLSAIMQAFFGYFASHFISNS--W 2334 Q V D ++ L E ++ Y L+T FY L + MQ + F+ + W Sbjct 2382 QHVVDRRVSFDYISLFKLVVELVIGYSLYTVCFYPLFVLVGMQLLTTWLPEFFMLGTMHW 2441 Query 2335 LMWFIISIVQMAPVSAMVRMYIFFASFYYVWKSYVHIMDGCTSSTCMMCYKRNRATRVEC 2394 + + M P ++R YI + Y V+ H+M GC+ C+ CYKRNR+ RV+C Sbjct 2442 SARLFVFVANMLPAFTLLRFYIVVTAMYKVYCLCRHVMYGCSKPGCLFCYKRNRSVRVKC 2501 Query 2395 TTIVNGVKRSFYVYANGGRGFCKAHNWNCLNCDTFCAGSTFISDEVARDLSLQFKRPINP 2454 +T+V G R + V ANGG GFC H WNCLNC+++ G+TFI+ E A DLS + KRP+NP Sbjct 2502 STVVGGSLRYYDVMANGGTGFCTKHQWNCLNCNSWKPGNTFITHEAAADLSKELKRPVNP 2561 Query 2455 TDQSAYVVDSVTVKNGALHLYFDKAGQKTYERHPLSHFVNLDNLRANNTKGSLPINVIVF 2514 TD + Y V V ++ L++++ GQ+ Y+ S FV+++ L + KG +V+V Sbjct 2562 TDSAYYSVIEVKQVGCSMRLFYERDGQRVYDDVSASLFVDMNGLLHSKVKGVPETHVVVV 2621 Query 2515 DGKSKCEESAAKSASVYYSQLMCQPILLLDQALVSDVGDSTEVSVKMFDAYVDTFSATFS 2574 + ++ +++ +A+V+Y+Q + +P+L++++ L++ VS MFD YV + Sbjct 2622 ENEA--DKAGFLNAAVFYAQSLYRPMLMVEKKLITTANTGLSVSRTMFDLYVYSLLRHLD 2679 Query 2575 VPMEKLKALVATAHSELAKGVALDGVLSTFVSAARQG-VVDTDVDTKDVIECLKLSHHSD 2633 V + L + V AH+ L +GV L+ V+ TFV AR+ +D+DV+TK + + + + ++ Sbjct 2680 VDRKSLTSFVNAAHNSLKEGVQLEQVMDTFVGCARRKCAIDSDVETKSITKSVMAAVNAG 2739 Query 2634 IEVTGDSCNNFMLTYNKVENMTPRDLGACIDCNARHINAQVAKSHNVSLVWNVKDYMSLS 2693 +EVT +SCNN + TY K + + DLG I NA+H+ + VAK+ NV+ +W+V + LS Sbjct 2740 VEVTDESCNNLVPTYVKSDTIVAADLGVLIQNNAKHVQSNVAKAANVACIWSVDAFNQLS 2799 Query 2694 EQLRKQIRSAAKKNNIPFRLTCATTRQVVNVITTKISLKGGKVVSTWFKLLLKVTLLCVL 2753 L+ ++R A K + +LT V ++TT SLKGG V S + L L+C + Sbjct 2800 ADLQHRLRKACVKTGLKIKLTYNKQEANVPILTTPFSLKGGAVFSRVLQWLFVANLICFI 2859 Query 2754 AALFCYVIMPVHSLSVHDGYTNEIIGYKAIQDGVTRDIVSTDDCFANKHAGFDSWFSQRG 2813 + +MP +++ D +K I +GV RD+ TD CFANK FD W+ Sbjct 2860 VL---WALMPTYAVHKSDMQLPLYASFKVIDNGVLRDVSVTDACFANKFNQFDQWYESTF 2916 Query 2814 G--SYRNDKNCPVVAAIITREIGFIVPGLPGTVLRALNGDFLHFLPRVFSAVGNICYTPS 2871 G YRN K CPVV A+I ++IG + +P VLR LHF+ F+ CYTP Sbjct 2917 GLVYYRNSKACPVVVAVIDQDIGHTLFNVPTKVLR-YGFHVLHFITHAFATDRVQCYTPH 2975 Query 2872 KLIEYSDFATSACVLAAECTIFKDAMGKPVPYCYDTNLLEGSISYSELRPDTRYVLMDGS 2931 I Y +F S CVL++ CT+ A G P PYCY ++ + YS L P RY L + Sbjct 2976 MQIPYDNFYASGCVLSSLCTMLAHADGTPHPYCYTEGVMHNASLYSSLVPHVRYNLASSN 3035 Query 2932 -IIQFPNTYLEGSVRVVTTFDAEYCRHGTCERSEVGVCLSTSGRWVLNNEHYRALPGVFC 2990 I+FP EG VRVV T YCR G CE +E G+C + + WVLNN +YRA+PG FC Sbjct 3036 GYIRFPEVVSEGIVRVVRTRSMTYCRVGLCEEAEEGICFNFNSSWVLNNPYYRAMPGTFC 3095 Query 2991 GVDAMNLIANIFTPLVQPVGALDVSASVVAGGIIAILVTCAAYYFMKFRRAFGEYNHVVA 3050 G +A +LI + LVQP+ ++AS VAG I+AI+V A YY +K +RAFG+Y VV Sbjct 3096 GRNAFDLIHQVLGGLVQPIDFFALTASSVAGAILAIIVVLAFYYLIKLKRAFGDYTSVVV 3155 Query 3051 ANALLFLMSFTILCLAPAYSFLPGVYSIFYLYLTFYFTNDVSFLAHLQWFAMFSPIVPFW 3110 N +++ ++F +L + Y L +Y+ FY Y T YF +++S + HLQW M+ I+P W Sbjct 3156 INVIVWCINFLMLFVFQVYPTLSCLYACFYFYTTLYFPSEISVVMHLQWLVMYGAIMPLW 3215 Query 3111 ITAIYVFCISLKHFHWFFSNYLKKRVMFNGVTFSTFEEAALCTFLLNKEMYLRLRSETLL 3170 YV + H W FS Y +K + + + TFEE AL TF++ KE Y +L++ + Sbjct 3216 FCITYVAVVVSNHALWLFS-YCRK-IGTDVRSDGTFEEMALTTFMITKESYCKLKNS--V 3271 Query 3171 PLTQYNRYLALYNKYKYFSGALDTTSYREAACCHLAKALNDFS-NSGADVLYQPPQTSIT 3229 +NRYL+LYNKY+YFSG +DT +YREAAC LAKA+ F+ N+G DVLYQPP S+T Sbjct 3272 SDVAFNRYLSLYNKYRYFSGKMDTATYREAACSQLAKAMETFNHNNGNDVLYQPPTASVT 3331 Query 3230 SAVLQSGFRKMAFPSGKVEGCMVQVTCGTTTLNGLWLDDTVYCPRHVVCTAEDMLNPNYD 3289 ++ LQSG KM P+ KVE C+V VT G TLNGLWLDD VYCPRHV+C++ DM +P+Y Sbjct 3332 TSFLQSGIVKMVSPTSKVEPCVVSVTYGNMTLNGLWLDDKVYCPRHVICSSADMTDPDYP 3391 Query 3290 DLLIRKSNHSFLVQAGNVQLRVIGHSMQNCLLRLKVDTSNPKTPKYKFVRIQPGQTFSVL 3349 +LL R ++ F V + + L V+ + MQ LL L V NP TPKY F ++PG+TF+VL Sbjct 3392 NLLCRVTSSDFCVMSDRMSLTVMSYQMQGSLLVLTVTLQNPNTPKYSFGVVKPGETFTVL 3451 Query 3350 ACYNGSPSGVYQCAMRPNHTIKGSFLNGSCGSVGFNIDYDCVSFCYMHHMELPTGVHAGT 3409 A YNG P G + MR +HTIKGSFL GSCGSVG+ + D V F YMH +EL TG H GT Sbjct 3452 AAYNGRPQGAFHVVMRSSHTIKGSFLCGSCGSVGYVLTGDSVRFVYMHQLELSTGCHTGT 3511 Query 3410 DLEGKFYGPFVDRQTAQAAGTDTTITLNVLAWLYAAVINGDRWFLNRFTTTLNDFNLVAM 3469 D G FYGP+ D Q Q D T T+NV+AWLYAA++N WF+ + +L +FN+ AM Sbjct 3512 DFSGNFYGPYRDAQVVQLPVQDYTQTVNVVAWLYAAILNRCNWFVQSDSCSLEEFNVWAM 3571 Query 3470 KYNYEPLTQDHVDILGPLSAQTGIAVLDMCAALKELLQNGMNGRTILGSTILEDEFTPFD 3529 + + D V L L++ TG+ V + AA+K L +G G+ ILGS +LEDE TP D Sbjct 3572 TNGFSSIKADLV--LDALASMTGVTVEQVLAAIKR-LHSGFQGKQILGSCVLEDELTPSD 3628 Query 3530 VVRQCSGVTFQGKFKKIVKGTHHWMLLTFLTSLLILVQSTQWSLFFFVYENAFLPFALGI 3589 V +Q +GV Q K +++KGT W+L + I+ +W++F +V + LG+ Sbjct 3629 VYQQLAGVKLQSKRTRVIKGTCCWILASTFLFCSIISAFVKWTMFMYVTTH-----MLGV 3683 Query 3590 MAVAAC----AMLLVKHKHAFLCLFLLPSLATVAYFNMVYMPASWVMRIM--TWLELADT 3643 A C AMLL+KHKH +L ++++P L T+ Y N + + R + WL Sbjct 3684 TLCALCFVIFAMLLIKHKHLYLTMYIMPVLCTLFYTNYLVVGYKQSFRGLAYAWLSYFVP 3743 Query 3644 SLSGYRLKDCVMYASA-LVLLILMTARTVYDDAARRVWTLMNVITLVYKVYYGNSLDQAI 3702 ++ Y D V+Y LV ++ +T R++ D ++ + +++LV Y+G +L++ + Sbjct 3744 AVD-YTYMDEVLYGVVLLVAMVFVTMRSINHDVFSTMFLVGRLVSLVSMWYFGANLEEEV 3802 Query 3703 SMWALVISVTSNYSGVVTTIMFLARAIVFVCVEYYPLLFITG-NTLQCIMLVYCFLGYCC 3761 ++ + S+ Y+ TT++ LA A V +L+ T ++ ++L Y +GY C Sbjct 3803 LLF--LTSLFGTYTW--TTMLSLATAKVIAKWLAVNVLYFTDIPQIKLVLLSYLCIGYVC 3858 Query 3762 CCYFGLFCLLNRYFRLTLGVYDYLVSTQEFRYMNSQGLLPPKSSIDAFKLNIKLLGIGGK 3821 CCY+G+ LLN FR+ LGVY+Y +S QE RYMN+ GL PP++S +A LN KLLGIGG Sbjct 3859 CCYWGVLSLLNSIFRMPLGVYNYKISVQELRYMNANGLRPPRNSFEALMLNFKLLGIGGV 3918 Query 3822 PCIKVATVQSKMSDVKCTSVVLLSVLQQLRVESSSKLWAQCVQLHNDILLAKDTTEAFEK 3881 P I+V+ +QS+++DVKC +VVLL+ LQ L + S+SKLW C LHN+IL D + AF+K Sbjct 3919 PVIEVSQIQSRLTDVKCANVVLLNCLQHLHIASNSKLWQYCSTLHNEILATSDLSVAFDK 3978 Query 3882 MVSLLSVLLSMQGAVD------INKLCEEMLDNRATLQAIASEFSSLPSYAAYATAQEAY 3935 + LL VL + AVD I ++ ++ + + LQA+ SEF ++ S+ Y A++ Sbjct 3979 LAQLLVVLFANPAAVDSKCLASIEEVSDDYVRDNTVLQALQSEFVNMASFVEYELAKKNL 4038 Query 3936 EQAVSNGDS-EVVLKKLKKSLNVAKSEFDHDAAMQRKLEKMADQAMTQMYKQARSEDKRA 3994 ++A ++G + + +K+L+K+ N+AKS ++ D A+ RKLE+MAD A+T MYK+AR DK++ Sbjct 4039 DEAKASGSANQQQIKQLEKACNIAKSAYERDRAVARKLERMADLALTNMYKEARINDKKS 4098 Query 3995 KVTSAMQTMLFTMLRKLDNDALNNIINNARDGCVPLNIIPLTTAAKLMVVVPDYGTYKNT 4054 KV SA+QTMLF+M+RKLDN ALN+I++NA GCVPLN IP T+ L ++VPD + Sbjct 4099 KVVSALQTMLFSMVRKLDNQALNSILDNAVKGCVPLNAIPPLTSNTLTIIVPDKQVFDQV 4158 Query 4055 CDGNTFTYASALWEIQQVVDADSKIVQLSEINMDNSPNLAWPLIVTALRAN--SAVKLQN 4112 D TYA +W IQ + DAD + QL+EI++ N WPL+++A R N S V LQN Sbjct 4159 VDNVYVTYAPNVWHIQSIQDADGAVKQLNEIDV----NSTWPLVISANRHNEVSTVVLQN 4214 Query 4113 NELSPVALRQMSCAAGTTQTACTDDNALAYYNNAKGGRFVLALLSDHQDLKWARFPKSDG 4172 NEL P LR +G+ + YYN G+ V A+LSD LK+ + K DG Sbjct 4215 NELMPQKLRTQVVNSGSDMNC--NIPTQCYYNTTGTGKIVYAILSDCDGLKYTKIVKEDG 4272 Query 4173 TGTIYTELEPPCRFVTDTPKGPKVKYLYFIKGLNNLNRGMVLGSLAATVRLQAGNATEVP 4232 + EL+PPC+F KG K+KYLYF+KG N L RG V+G+L++TVRLQAG ATE Sbjct 4273 NCVV-LELDPPCKFSVQDVKGLKIKYLYFVKGCNTLARGWVVGTLSSTVRLQAGTATEYA 4331 Query 4233 ANSTVLSFCAFAVDPAKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPEANMDQESF 4292 +NS +LS CAF+VDP K Y DY+ GG P+TNCVKMLC H GTG AIT+ PEA +Q+S+ Sbjct 4332 SNSAILSLCAFSVDPKKTYLDYIQQGGVPVTNCVKMLCDHAGTGMAITIKPEATTNQDSY 4391 Query 4293 GGASCCLYCRCHIDHPNPKGFCDLKGKYVQIPTTCANDPVGFTLRNTVCTVCGMWKGYGC 4352 GGAS C+YCR ++HP+ G C L+GK+VQ+P DPV + L + VC VCG W+ C Sbjct 4392 GGASVCIYCRSRVEHPDVDGLCKLRGKFVQVPLG-IKDPVSYVLTHDVCQVCGFWRDGSC 4450 Query 4353 SC 4354 SC Sbjct 4451 SC 4452 Range 2: 834 to 947 Score:71.2 bits(173), Expect:3e-10, Method:Compositional matrix adjust., Identities:44/114(39%), Positives:61/114(53%), Gaps:4/114(3%) Query 822 KGVTFGED-TVLEVQGYKNVKITFELDVRVDKVLNEKCSVYTVESGTEVTEFACVVAEAV 880 K V F + V EV + +KI F LD D VL++ CS + V+ + E VV +AV Sbjct 834 KKVVFNDKPKVKEVPSTRKIKIIFALDATFDSVLSKACSEFEVDKDVTLDELLDVVLDAV 893 Query 881 VKTLQPVSD---LLTPMGIDLDEWSVATFYLFDDAGEEKLSSRMYCSFYPPDEE 931 TL P + + T + L+ YLFD+ GEE ++SRMYCSF PDE+ Sbjct 894 ESTLSPCKEHGVIGTKVCALLERLVDDYVYLFDEGGEEVIASRMYCSFSAPDED 947 Range 3: 1319 to 1473 Score:67.4 bits(163), Expect:4e-09, Method:Compositional matrix adjust., Identities:56/155(36%), Positives:83/155(53%), Gaps:2/155(1%) Query 1007 LTDNVAIKCIDIVKEAQSAKPTVIVNAANTHLKHGGGVAGALNKATNGAMQNESDEYIRQ 1066 +T NV D++K + VIVN AN + HG GVAGA+ KA A NE+ + ++ Sbjct 1319 ITPNVCFVKGDVIKVLRRVGAEVIVNPANGRMAHGAGVAGAIAKAAGKAFINETADMVKA 1378 Query 1067 NGPLTVGGSCLLSGHNLAEKCLHVVGPNL--NAGEDVQLLKRAYENFNSQDVLLAPLLSA 1124 G VGG +G L +K L++VGP+ + E LL+RAY++ N D ++ L+SA Sbjct 1379 QGVCQVGGCYESTGGKLCKKVLNIVGPDARGHGNECYSLLERAYQHINKCDNVVTTLISA 1438 Query 1125 GIFGAKPLQSLKMCVEIVRTQVYLAVNDKSLYDQI 1159 GIF SL + +V V L N++ +D I Sbjct 1439 GIFSVPTDVSLTYLLGVVTKNVILVSNNQDDFDVI 1473 >RecName: Full=Replicase polyprotein 1a; Short=pp1a; AltName: Full=ORF1a polyprotein; Contains: RecName: Full=Non-structural protein 1; Short=nsp1; AltName: Full=p28; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p65; Contains: RecName: Full=Papain-like protease nsp3; Short=PL-PRO; AltName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=PL1-PRO/PL2-PRO; AltName: Full=PL1/PL2; AltName: Full=PL2-PRO; AltName: Full=Papain-like proteinases 1/2; AltName: Full=p210; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; AltName: Full=Peptide HD2; AltName: Full=p44; Contains: RecName: Full=3C-like proteinase nsp5; Short=3CL-PRO; Short=3CLp; AltName: Full=M-PRO; AltName: Full=nsp5; AltName: Full=p27; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; AltName: Full=p10; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; AltName: Full=p22; Contains: RecName: Full=RNA-capping enzyme subunit nsp9; AltName: Full=Non-structural protein 9; Short=nsp9; AltName: Full=p12; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; AltName: Full=p15; Contains: RecName: Full=Non-structural protein 11; Short=nsp11 [Human coronavirus HKU1 (isolate N2)] Sequence ID: P0C6U4.1 Length: 4441 Range 1: 1620 to 4439 Score:1821 bits(4718), Expect:0.0, Method:Compositional matrix adjust., Identities:1073/2890(37%), Positives:1586/2890(54%), Gaps:120/2890(4%) Query 1537 KTIKVFTTVDNTNLHTHIVDMSMTYGQQFGPTYLDGADVTKIKPHVNHEGKTFFVLPSDD 1596 K I V TVD N + + + +G+ G + DG DVTK+K + K + + Sbjct 1620 KKIDVLLTVDGVNFKSISLTVGEVFGKILGNVFCDGIDVTKLKCSDFYADKILYQYENLS 1679 Query 1597 TLRSEAFEYYHTIDESFLGRYMSALNHTKKWKFPQVGGLTSIKWADNNCYLSSVLLALQQ 1656 A + D+ L Y + L KW G S + + NNCY++ L LQ Sbjct 1680 LADISAVQSSFGFDQQQLLAYYNFLT-VCKWSVVVNGPFFSFEQSHNNCYVNVACLMLQH 1738 Query 1657 VEVKFNAPALQEAYYRARAGDAANFCALILAYSNKTVGELGDVRETMTHLLQHANLESAK 1716 + +KFN QEA+Y RAG AL+LA + E D + + +L+ A+L A Sbjct 1739 INLKFNKWQWQEAWYEFRAGRPHRLVALVLAKGHFKFDEPSDATDFIRVVLKQADLSGAI 1798 Query 1717 RVLNVVCKHCGQKTTTLKGVEAVMYMGTLSYDELKTGVSIPCVC-GRNATQYLVQQESSF 1775 L ++C CG K + GV+AVM+ GTL+ +L G I C C GR + + F Sbjct 1799 CELELICD-CGIKQESRVGVDAVMHFGTLAKTDLFNGYKIGCNCAGR--IVHCTKLNVPF 1855 Query 1776 VMMSAPPAEYKLQQGAFLCANEYTGNYQCGHYTHITAKETLYRVDGAHLTKMSEYKGPVT 1835 ++ S P L + AN + G GHYTH+ D + K + G +T Sbjct 1856 LICSNTPLSKDLPDDV-VAANMFMG-VGVGHYTHLKCGSPYQHYDACSVKKYTGVSGCLT 1913 Query 1836 DVFY-KETSYTTAIKPVSYKLDGVTYTEIEPKLDGYYKKGNAYYTEQPIDLVPTQPMPNA 1894 D Y K + T +Y LD V P L YY YYT +PI + Q P A Sbjct 1914 DCLYLKNLTQTFTSMLTNYFLDDVEMVAYNPDLSQYYCDNGKYYT-KPI--IKAQFKPFA 1970 Query 1895 SFD----NFKLTCSNTKFADDLNQMTGFKKPAS-RELTVTFFPDLNGDVVAIDYRHYSTS 1949 D NFKL + LN GF E VT +P GDVV Y Sbjct 1971 KVDGVYTNFKLVGHDI--CAQLNDKLGFNVDLPFVEYKVTVWPVATGDVVLASDDLYVKR 2028 Query 1950 FKKGAKLVHKPILW--HINQTTNKTTY--KPNIWCLRCLWSTKPVDTSNSFEVLVVEDTQ 2005 + KG + KP++W H + N TY KP+ + N + VL V Sbjct 2029 YFKGCETFGKPVIWLCHDEASLNSLTYFNKPSF------------KSENRYSVLSV---- 2072 Query 2006 GMDNLACESQTTTSEEVVENPTVQKEI-IECDVKTTEVVGNVILKPSEEGVKVTQELGHE 2064 D+++ ESQ V+E+ KE+ ++ KT ++ +I+ +KV + L Sbjct 2073 --DSVSEESQGNVVTSVMESQISTKEVKLKGVRKTVKIEDAIIVNDENSSIKVVKSLSLV 2130 Query 2065 DLMAAYVEETSITIKKPNELSLALGLKTLATHGAAAINSVPWSKILAYVKPFLGQTAVIT 2124 D+ Y+ + NELS + T+ + I + L ++ QT ++ Sbjct 2131 DVWDMYLTGCDYVVWVANELSRLVKSPTVREYIRYGIKPITIPIDLLCLRD-DNQTLLVP 2189 Query 2125 SNCIKKCVQRVFSNYMPYVITLLFQLCTFTKSTNSRIKASLPTTIAKNSVKSVAKLCLDV 2184 + ++ F ++ ++ +F L FT T IA ++ L L Sbjct 2190 KIFKARAIE--FYGFLKWLFIYVFSLLHFTNDKT----IFYTTEIASKFTFNLFCLALKN 2243 Query 2185 CINYVKSPKFSKLFTIV-----MWL--LLLSICLGSL---------TYVTAVLGVCLSSL 2228 + F K F +V W L +++ +V ++ ++ Sbjct 2244 AFQTFRWSIFIKGFLVVATVFLFWFNFLYINVIFSDFYLPNISVFPIFVGRIVMWIKATF 2303 Query 2229 GVPSYCDGVRELYINSSNVTTMDFCQGYFPCSVCLSGLDSLDSYPALETIQVTISSYKL- 2287 G+ + CD +L + T FC G F C +C SG D LD+Y A++ +Q + L Sbjct 2304 GLVTICDFYSKLGVG----FTSHFCNGSFICELCYSGFDMLDTYAAIDFVQYEVDRRVLF 2359 Query 2288 -DLTFLGLAAEWLLAYMLFTKFFYLLGLSAIMQAFFGYFASHFISNS--WLMWFIISIVQ 2344 ++ + L E ++ Y L+T +FY L +Q F + F+ + WL+ FI+ + Sbjct 2360 DYVSLVKLIVELVIGYSLYTVWFYPLFCLIGLQLFTTWLPDLFMLETMHWLIRFIVFVAN 2419 Query 2345 MAPVSAMVRMYIFFASFYYVWKSYVHIMDGCTSSTCMMCYKRNRATRVECTTIVNGVKRS 2404 M P ++R YI + Y V HI+ GC + C+ CYKRN + RV+C+TIV GV R Sbjct 2420 MLPAFVLLRFYIVVTAMYKVVGFIRHIVYGCNKAGCLFCYKRNCSVRVKCSTIVGGVIRY 2479 Query 2405 FYVYANGGRGFCKAHNWNCLNCDTFCAGSTFISDEVARDLSLQFKRPINPTDQSAYVVDS 2464 + + ANGG GFC H WNC NC +F G+TFI+ E A +LS + KRP+NPTD S YVV Sbjct 2480 YDITANGGTGFCVKHQWNCFNCHSFKPGNTFITVEAAIELSKELKRPVNPTDASHYVVTD 2539 Query 2465 VTVKNGALHLYFDKAGQKTYERHPLSHFVNLDNLRANNTKGSLPINVIVFDGKSKCEESA 2524 + + L++D+ GQ+ Y+ S FV+++NL + K + V+V +S + + Sbjct 2540 IKQVGCMMRLFYDRDGQRVYDDVDASLFVDINNLLHSKVKVVPNLYVVV--VESDADRAN 2597 Query 2525 AKSASVYYSQLMCQPILLLDQALVSDVGDSTEVSVKMFDAYVDTFSATFSVPMEKLKALV 2584 +A V+Y+Q + +PILL+D+ L++ + V+ MFD YVDTF + F V + V Sbjct 2598 FLNAVVFYAQSLYRPILLVDKKLITTACNGISVTQTMFDVYVDTFMSHFDVDRKSFNNFV 2657 Query 2585 ATAHSELAKGVALDGVLSTFVSAARQGV-VDTDVDTKDVIECLKLSHHSDIEVTGDSCNN 2643 AH+ L +GV L+ VL TFV R+ +D+DV+T+ + + + + + +E T ++ NN Sbjct 2658 NIAHASLREGVQLEKVLDTFVGCVRKCCSIDSDVETRFITKSMISAVAAGLEFTDENYNN 2717 Query 2644 FMLTYNKVENMTPRDLGACIDCNARHINAQVAKSHNVSLVWNVKDYMSLSEQLRKQIRSA 2703 + TY K +N+ DLG I A+H+ VAK+ N+S +W + + L+ L+ +++ A Sbjct 2718 LVPTYLKSDNIVAADLGVLIQNGAKHVQGNVAKAANISCIWFIDTFNQLTADLQHKLKKA 2777 Query 2704 AKKNNIPFRLTCATTRQVVNVITTKISLKGGKVVSTWFKLLLKVTLLCVLAALFCYVIMP 2763 K + +LT V ++TT SLKGG V+S +L ++L+C + + ++P Sbjct 2778 CVKTGLKLKLTFNKQEASVPILTTPFSLKGGVVLSNLLYILFFISLICFI---LLWALLP 2834 Query 2764 VHSLSVHDGYTNEIIGYKAIQDGVTRDIVSTDDCFANKHAGFDSWFSQRGGS--YRNDKN 2821 +S+ D + +K I +GV RDI D CFANK FD W+ GS Y N + Sbjct 2835 TYSVYKSDIHLPAYASFKVIDNGVVRDISVNDLCFANKFFQFDQWYESTFGSFYYHNSMD 2894 Query 2822 CPVVAAIITREIGFIVPGLPGTVLRALNGDFLHFLPRVFSAVGNICYTPSKLIEYSDFAT 2881 CP+V A++ +IG + +P VLR LHFL F++ CYTP I Y+DF Sbjct 2895 CPIVVAVMDEDIGSTMFNVPTKVLRH-GFHVLHFLTYAFASDSVQCYTPHIQISYNDFYA 2953 Query 2882 SACVLAAECTIFKDAMGKPVPYCYDTNLLEGSISYSELRPDTRYVLMDGS-IIQFPNTYL 2940 S CVL++ CT+FK G P PYCY +++ + Y+ L P TRY L + + I+FP+ Sbjct 2954 SGCVLSSLCTMFKRGDGTPHPYCYSDGVMKNASLYTSLVPHTRYSLANSNGFIRFPDVIS 3013 Query 2941 EGSVRVVTTFDAEYCRHGTCERSEVGVCLSTSGRWVLNNEHYRALPGVFCGVDAMNLIAN 3000 EG VR+V T YCR G CE +E G+C + + WVLNN++YR++PG FCG D +L Sbjct 3014 EGIVRIVRTRSMTYCRVGACEYAEEGICFNFNSSWVLNNDYYRSMPGTFCGRDLFDLFYQ 3073 Query 3001 IFTPLVQPVGALDVSASVVAGGIIAILVTCAAYYFMKFRRAFGEYNHVVAANALLFLMSF 3060 F+ L++P+ ++AS + G I+AI+V YY +K +RAFG+Y VV N +++ ++F Sbjct 3074 FFSSLIRPIDFFSLTASSIFGAILAIVVVLVFYYLIKLKRAFGDYTSVVVINVIVWCINF 3133 Query 3061 TILCLAPAYSFLPGVYSIFYLYLTFYFTNDVSFLAHLQWFAMFSPIVPFWITAIYVFCIS 3120 +L + Y VY+ FY Y+T YF +++S + HLQW M+ I+PFW YV + Sbjct 3134 LMLFVFQVYPICACVYACFYFYVTLYFPSEISVIMHLQWIVMYGAIMPFWFCVTYVAMVI 3193 Query 3121 LKHFHWFFSNYLKKRVMFNGVTFSTFEEAALCTFLLNKEMYLRLRSETLLPLTQYNRYLA 3180 H W FS Y +K + N STFEE +L TF++ K+ Y RL++ + YNRYL+ Sbjct 3194 ANHVLWLFS-YCRK-IGVNVCNDSTFEETSLTTFMITKDSYCRLKNS--VSDVAYNRYLS 3249 Query 3181 LYNKYKYFSGALDTTSYREAACCHLAKALNDFS-NSGADVLYQPPQTSITSAVLQSGFRK 3239 LYNKY+Y+SG +DT +YREAAC LAKA+ F+ N+G DVLYQPP S++++ LQSG K Sbjct 3250 LYNKYRYYSGKMDTAAYREAACSQLAKAMETFNHNNGNDVLYQPPTASVSTSFLQSGIVK 3309 Query 3240 MAFPSGKVEGCMVQVTCGTTTLNGLWLDDTVYCPRHVVCTAEDMLNPNYDDLLIRKSNHS 3299 M P+ K+E C+V VT G+ TLNGLWLDD VYCPRHV+C + +M P+Y LL R + Sbjct 3310 MVSPTSKIEPCIVSVTYGSMTLNGLWLDDKVYCPRHVICLSSNMNEPDYSALLCRVTLGD 3369 Query 3300 FLVQAGNVQLRVIGHSMQNCLLRLKVDTSNPKTPKYKFVRIQPGQTFSVLACYNGSPSGV 3359 F + +G + L V+ + MQ C L L V NP TPKY F ++PG+TF+VLA YNG P G Sbjct 3370 FTIMSGRMSLTVVSYQMQGCQLVLTVSLQNPYTPKYTFGVVKPGETFTVLAAYNGRPQGA 3429 Query 3360 YQCAMRPNHTIKGSFLNGSCGSVGFNIDYDCVSFCYMHHMELPTGVHAGTDLEGKFYGPF 3419 + MR ++TIKGSFL GSCGSVG+ + D V F YMH +EL TG H GTD G FYGP+ Sbjct 3430 FHVTMRSSYTIKGSFLCGSCGSVGYVLTGDSVKFVYMHQLELSTGCHTGTDFTGNFYGPY 3489 Query 3420 VDRQTAQAAGTDTTITLNVLAWLYAAVINGDRWFLNRFTTTLNDFNLVAMKYNYEPLTQD 3479 D Q Q D T+NV+AWLYAA++N WF+ ++ DFN+ AM + + D Sbjct 3490 RDAQVVQLPVKDYVQTVNVIAWLYAAILNNCAWFVQNDVCSIEDFNVWAMTNGFSQVKAD 3549 Query 3480 HVDILGPLSAQTGIAVLDMCAALKELLQNGMNGRTILGSTILEDEFTPFDVVRQCSGVTF 3539 V L L++ TG+++ + AA+K L G GR ILGS EDE P DV +Q +GV Sbjct 3550 LV--LDALASMTGVSIETLLAAIKRLYM-GFQGRQILGSCTFEDELAPSDVYQQLAGVKL 3606 Query 3540 QGKFKKIVKGTHHWMLL-TFLTSLLILVQSTQWSLFFFVYENAFLPFALGIMAVAACAML 3598 Q K K+ +K T +W+L+ TFL S I+ +W++F ++ + L ++ + ML Sbjct 3607 QSKTKRFIKETIYWILISTFLFS-CIISAFVKWTIFMYI-NTHMIGVTLCVLCFVSFMML 3664 Query 3599 LVKHKHAFLCLFLLPSLATVAYFN-MVYMPASWVMRIMTWLELADTSLSGYRLKDCVMYA 3657 LVKHKH +L ++++P L T+ Y N +V + WL +++ + + V Y Sbjct 3665 LVKHKHFYLTMYIIPVLCTLFYVNYLVVYKEGFRGLTYVWLSYFVPAVNFTYVYE-VFYG 3723 Query 3658 SAL-VLLILMTARTVYDDAARRVWTLMNVITLVYKVYYGNSLDQAISMWALVISVTSNYS 3716 L V I +T ++ D ++ + ++TL+ Y+G++L++ + ++ T + Sbjct 3724 CILCVFAIFITMHSINHDIFSLMFLVGRIVTLISMWYFGSNLEEDVLLFITAFLGTYTW- 3782 Query 3717 GVVTTIMFLARA-IVFVCVEYYPLLFITGNTLQCIMLVYCFLGYCCCCYFGLFCLLNRYF 3775 TTI+ LA A IV + F ++ I+L Y F+GY CY+G F LLN F Sbjct 3783 ---TTILSLAIAKIVANWLSVNIFYFTDVPYIKLILLSYLFIGYILSCYWGFFSLLNSVF 3839 Query 3776 RLTLGVYDYLVSTQEFRYMNSQGLLPPKSSIDAFKLNIKLLGIGGKPCIKVATVQSKMSD 3835 R+ +GVY+Y +S QE RYMN+ GL PP++S +A LN+KLLGIGG P I+V+ +QSK++D Sbjct 3840 RMPMGVYNYKISVQELRYMNANGLRPPRNSFEAILLNLKLLGIGGVPVIEVSQIQSKLTD 3899 Query 3836 VKCTSVVLLSVLQQLRVESSSKLWAQCVQLHNDILLAKDTTEAFEKMVSLLSVLLSMQGA 3895 VKC +VVLL+ LQ L V S+S+LW C LHN+IL D + AF+K+ LL VL + A Sbjct 3900 VKCANVVLLNCLQHLHVASNSRLWQYCSILHNEILSTSDLSVAFDKLAQLLIVLFANPAA 3959 Query 3896 VD------INKLCEEMLDNRATLQAIASEFSSLPSYAAYATAQEAYEQAVSNGD-SEVVL 3948 VD I+++ ++ + + LQA+ SEF ++ S+ Y A++ A ++G ++ + Sbjct 3960 VDTKCLASIDEVSDDYVQDSTVLQALQSEFVNMASFVEYEVAKKNLADAKNSGSVNQQQI 4019 Query 3949 KKLKKSLNVAKSEFDHDAAMQRKLEKMADQAMTQMYKQARSEDKRAKVTSAMQTMLFTML 4008 K+L+K+ N+AKS ++ D A+ RKLE+MAD A+T MYK+AR DK++KV SA+QTMLF+M+ Sbjct 4020 KQLEKACNIAKSVYERDKAVARKLERMADLALTNMYKEARINDKKSKVVSALQTMLFSMV 4079 Query 4009 RKLDNDALNNIINNARDGCVPLNIIPLTTAAKLMVVVPDYGTYKNTCDGNTFTYASALWE 4068 RKLDN ALN+I++NA GCVPLN IP A L +++PD + D YA ++W Sbjct 4080 RKLDNQALNSILDNAVKGCVPLNAIPALAANTLTIIIPDKQVFDKVVDNVYVAYAGSVWH 4139 Query 4069 IQQVVDADSKIVQLSEINMDNSPNLAWPLIVTALRANSAVK--LQNNELSPVALRQMSCA 4126 IQ V DAD QL++I++D++ WPL++ A R N +QNNEL P L+ Sbjct 4140 IQTVQDADGINKQLTDISVDSN----WPLVIIANRYNEVANAVMQNNELMPHKLKIQVVN 4195 Query 4127 AGTTQTACTDDNALAYYNNAKGGRFVLALLSDHQDLKWARFPKSDGTGTIYTELEPPCRF 4186 +G+ + YYNN GR V A+LSD LK+ + K DG + EL+PPC+F Sbjct 4196 SGSDMNC--NIPTQCYYNNGSSGRIVYAVLSDVDGLKYTKIIKDDGNCVV-LELDPPCKF 4252 Query 4187 VTDTPKGPKVKYLYFIKGLNNLNRGMVLGSLAATVRLQAGNATEVPANSTVLSFCAFAVD 4246 KG K+KYLYFIKG N L RG V+G+L++T+RLQAG ATE ANS++LS CAF+VD Sbjct 4253 SIQDVKGLKIKYLYFIKGCNTLARGWVVGTLSSTIRLQAGVATEYAANSSILSLCAFSVD 4312 Query 4247 PAKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPEANMDQESFGGASCCLYCRCHID 4306 P K Y DY+ GG PI NCVKMLC H GTG AIT+ PEA ++Q+S+GGAS C+YCR ++ Sbjct 4313 PKKTYLDYIQQGGVPIINCVKMLCDHAGTGMAITIKPEATINQDSYGGASVCIYCRARVE 4372 Query 4307 HPNPKGFCDLKGKYVQIPTTCANDPVGFTLRNTVCTVCGMWKGYGCSCDQLREPMMQSAD 4366 HP+ G C L+GK+VQ+P DP+ + L + VC VCG W+ CSC +QS D Sbjct 4373 HPDVDGLCKLRGKFVQVPLG-IKDPILYVLTHDVCQVCGFWRDGSCSCVG-SGVAVQSKD 4430 Query 4367 ASTFLNGFAV 4376 + FLNGF V Sbjct 4431 LN-FLNGFGV 4439 Range 2: 1328 to 1484 Score:91.3 bits(225), Expect:2e-16, Method:Compositional matrix adjust., Identities:57/157(36%), Positives:82/157(52%), Gaps:2/157(1%) Query 1005 LKLTDNVAIKCIDIVKEAQSAKPTVIVNAANTHLKHGGGVAGALNKATNGAMQNESDEYI 1064 L +T NV DI+ A+ K VIVN AN H+ HGGGVA A+ A E+ + Sbjct 1328 LCITPNVCFVKGDIINVARLVKADVIVNPANGHMLHGGGVAKAIAVAAGKKFSKETAAMV 1387 Query 1065 RQNGPLTVGGSCLLSGHNLAEKCLHVVGPNL--NAGEDVQLLKRAYENFNSQDVLLAPLL 1122 + G VG + +G L + L++VGP+ + + LL RAY++ N+ D L+ L+ Sbjct 1388 KSKGVCQVGDCYVSTGGKLCKTILNIVGPDARQDGRQSYVLLARAYKHLNNYDCCLSTLI 1447 Query 1123 SAGIFGAKPLQSLKMCVEIVRTQVYLAVNDKSLYDQI 1159 SAGIF SL + +V QV L N+K +D I Sbjct 1448 SAGIFSVPADVSLTYLLGVVDKQVILVSNNKEDFDII 1484 Range 3: 620 to 937 Score:70.5 bits(171), Expect:4e-10, Method:Compositional matrix adjust., Identities:84/352(24%), Positives:146/352(41%), Gaps:45/352(12%) Query 605 LVQQTMQWLSNMLGTAVDKLKPVFTWVEAKLSAGVEFLRDAWEILKFLITGVFDVIKGQI 664 LV + + W + ML D P W+ +L G+ + A LI ++ + Sbjct 620 LVNKMVNWFNTML----DASAPATGWLLYQLLNGLFVVSQANFNFVALIPDYAKILVNKF 675 Query 665 QVATDNIKECVKIFLGVVNKALEMCLDQVTIAGTKLRALNLGEVFIAQSRGLYRQCIRGK 724 + ECV + + L+ V I G K ++ G + G C + Sbjct 676 YTFFKLLLECVTVDVLKDMPVLKTINGLVCIVGNKFYNVSTGLI-----PGFVLPC-NAQ 729 Query 725 EQLQLLMPLKAPKEVTFLEGDAHDTVLTSEEVVLKSGELEALETPIDSF---TSGAVVGT 781 EQ ++ F EG +E V+++ +E +++ + S+ V Sbjct 730 EQ-----------QIYFFEG-------VAESVIVEDDVIENVKSSLSSYEYCQPPKSVEK 771 Query 782 PVCINGLMLLELENKEQYCALSPGLLATNNVFRLKGG--APVKG--VTFGED-TVLEVQG 836 I+ + + + +K P ++ N+ L P G V F E V+E+ Sbjct 772 ICIIDNMYMGKCGDK-----FFPIVMNDKNICLLDQAWRFPCAGRKVNFNEKPVVMEIPS 826 Query 837 YKNVKITFELDVRVDKVLNEKCSVYTVESGTEVTEFACVVAEAVVKTLQPVSD---LLTP 893 VK+ F+LD D +L + CS + VE G V +F VV +A+ L D + Sbjct 827 LMTVKVMFDLDSTFDDILGKVCSEFEVEKGVTVDDFVAVVCDAIENALNSCKDHPVVGYQ 886 Query 894 MGIDLDEWSVATFYLFDDAGEEKLSSRMYCSFYPPDEEEDCEECEDEEETCE 945 + L++ + YLFD+AG+E ++SRMYC+F ++ ED E E+T + Sbjct 887 VRAFLNKLNENVVYLFDEAGDEAMASRMYCTF-AIEDVEDVISSEAVEDTID 937 >RecName: Full=Replicase polyprotein 1a; Short=pp1a; AltName: Full=ORF1a polyprotein; Contains: RecName: Full=Non-structural protein 1; Short=nsp1; AltName: Full=p28; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p65; Contains: RecName: Full=Papain-like protease nsp3; Short=PL-PRO; AltName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=PL1-PRO/PL2-PRO; AltName: Full=PL1/PL2; AltName: Full=PL2-PRO; AltName: Full=Papain-like proteinases 1/2; AltName: Full=p210; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; AltName: Full=Peptide HD2; AltName: Full=p44; Contains: RecName: Full=3C-like proteinase nsp5; Short=3CL-PRO; Short=3CLp; AltName: Full=M-PRO; AltName: Full=nsp5; AltName: Full=p27; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; AltName: Full=p10; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; AltName: Full=p22; Contains: RecName: Full=RNA-capping enzyme subunit nsp9; AltName: Full=Non-structural protein 9; Short=nsp9; AltName: Full=p12; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; AltName: Full=p15; Contains: RecName: Full=Non-structural protein 11; Short=nsp11 [Human coronavirus HKU1 (isolate N5)] Sequence ID: P0C6U5.1 Length: 4421 Range 1: 1600 to 4419 Score:1817 bits(4706), Expect:0.0, Method:Compositional matrix adjust., Identities:1076/2895(37%), Positives:1587/2895(54%), Gaps:130/2895(4%) Query 1537 KTIKVFTTVDNTNLHTHIVDMSMTYGQQFGPTYLDGADVTKIKPHVNHEGKTFFVLPSDD 1596 K I V TVD N + + + +G+ G + DG DVTK+K + K + + Sbjct 1600 KKIDVLLTVDGVNFKSISLTVGEVFGKILGNVFCDGIDVTKLKCSDFYADKILYQYENLS 1659 Query 1597 TLRSEAFEYYHTIDESFLGRYMSALNHTKKWKFPQVGGLTSIKWADNNCYLSSVLLALQQ 1656 A + D+ L Y + L KW G S + + NNCY++ L LQ Sbjct 1660 LADISAVQSSFGFDQQQLLAYYNFLT-VCKWSVVVNGPFFSFEQSHNNCYVNVACLMLQH 1718 Query 1657 VEVKFNAPALQEAYYRARAGDAANFCALILAYSNKTVGELGDVRETMTHLLQHANLESAK 1716 + +KFN QEA+Y RAG AL+LA + E D + + +L+ A+L A Sbjct 1719 INLKFNKWQWQEAWYEFRAGRPHRLVALVLAKGHFKFDEPSDATDFIRVVLKQADLSGAI 1778 Query 1717 RVLNVVCKHCGQKTTTLKGVEAVMYMGTLSYDELKTGVSIPCVC-GRNATQYLVQQESSF 1775 L ++C CG K + GV+AVM+ GTL+ +L G I C C GR + + F Sbjct 1779 CELELICD-CGIKQESRVGVDAVMHFGTLAKTDLFNGYKIGCNCAGR--IVHCTKLNVPF 1835 Query 1776 VMMSAPPAEYKLQQGAFLCANEYTGNYQCGHYTHITAKETLYRVDGAHLTKMSEYKGPVT 1835 ++ S P L + AN + G GHYTH+ D + K + G +T Sbjct 1836 LICSNTPLSKDLPDDV-VAANMFMG-VGVGHYTHLKCGSPYQHYDACSVKKYTGVSGCLT 1893 Query 1836 DVFY-KETSYTTAIKPVSYKLDGVTYTEIEPKLDGYYKKGNAYYTEQPIDLVPTQPMPNA 1894 D Y K + T +Y LD V P L YY YYT +PI + Q P A Sbjct 1894 DCLYLKNLTQTFTSMLTNYFLDDVEMVAYNPDLSQYYCDNGKYYT-KPI--IKAQFKPFA 1950 Query 1895 SFD----NFKLTCSNTKFADDLNQMTGFKKPAS-RELTVTFFPDLNGDVVAIDYRHYSTS 1949 D NFKL + LN GF E VT +P GDVV Y Sbjct 1951 KVDGVYTNFKLVGHDI--CAQLNDKLGFNVDLPFVEYKVTVWPVATGDVVLASDDLYVKR 2008 Query 1950 FKKGAKLVHKPILW--HINQTTNKTTY--KPNIWCLRCLWSTKPVDTSNSFEVLVVEDTQ 2005 + KG + KP++W H + N TY KP+ + N + VL V Sbjct 2009 YFKGCETFGKPVIWFCHDEASLNSLTYFNKPSF------------KSENRYSVLSV---- 2052 Query 2006 GMDNLACESQTTTSEEVVENPTVQKEI-IECDVKTTEVVGNVILKPSEEGVKVTQELGHE 2064 D+++ ESQ V+E+ KE+ ++ KT ++ +I+ +KV + L Sbjct 2053 --DSVSEESQGNVVTSVMESQISTKEVKLKGVRKTVKIEDAIIVNDENSSIKVVKSLSLV 2110 Query 2065 DLMAAYVEETSITIKKPNELSLALGLKTLATHGAAAINSVPWSKILAYVKPFLGQTAVIT 2124 D+ Y+ + NELS + T+ + I + L ++ QT ++ Sbjct 2111 DVWDMYLTGCDYVVWVANELSRLVKSPTVREYIRYGIKPITIPIDLLCLRD-DNQTLLVP 2169 Query 2125 SNCIKKCVQRVFSNYMPYVITLLFQLCTFTKSTNSRIKASLPTTIAKNSVKSVAKLCLDV 2184 + ++ F ++ ++ +F L FT T IA ++ L L Sbjct 2170 KIFKARAIE--FYGFLKWLFIYVFSLLHFTNDKT----IFYTTEIASKFTFNLFCLALKN 2223 Query 2185 CINYVKSPKFSKLFTIV-----MWL--LLLSICLGSL---------TYVTAVLGVCLSSL 2228 + F K F +V W L +++ +V ++ ++ Sbjct 2224 AFQTFRWSIFIKGFLVVATVFLFWFNFLYINVIFSDFYLPNISVFPIFVGRIVMWIKATF 2283 Query 2229 GVPSYCDGVRELYINSSNVTTMDFCQGYFPCSVCLSGLDSLDSYPALETIQVTISSYKL- 2287 G+ + CD +L + T FC G F C +C SG D LD+Y A++ +Q + L Sbjct 2284 GLVTICDFYSKLGVG----FTSHFCNGSFICELCHSGFDMLDTYAAIDFVQYEVDRRVLF 2339 Query 2288 -DLTFLGLAAEWLLAYMLFTKFFYLLGLSAIMQAFFGYFASHFISNS--WLMWFIISIVQ 2344 ++ + L E ++ Y L+T +FY L +Q F + F+ + WL+ FI+ + Sbjct 2340 DYVSLVKLIVELVIGYSLYTVWFYPLFCLIGLQLFTTWLPDLFMLETMHWLIRFIVFVAN 2399 Query 2345 MAPVSAMVRMYIFFASFYYVWKSYVHIMDGCTSSTCMMCYKRNRATRVECTTIVNGVKRS 2404 M P ++R YI + Y V HI+ GC + C+ CYKRN + RV+C+TIV GV R Sbjct 2400 MLPAFVLLRFYIVVTAMYKVVGFIRHIVYGCNKAGCLFCYKRNCSVRVKCSTIVGGVIRY 2459 Query 2405 FYVYANGGRGFCKAHNWNCLNCDTFCAGSTFISDEVARDLSLQFKRPINPTDQSAYVVDS 2464 + + ANGG GFC H WNC NC +F G+TFI+ E A +LS + KRP+NPTD S YVV Sbjct 2460 YDITANGGTGFCVKHQWNCFNCHSFKPGNTFITVEAAIELSKELKRPVNPTDASHYVVTD 2519 Query 2465 VTVKNGALHLYFDKAGQKTYERHPLSHFVNLDNLRANNTKGSLPINVIVFDGKSKCEESA 2524 + + L++D+ GQ+ Y+ S FV+++NL + K + V+V +S + + Sbjct 2520 IKQVGCMMRLFYDRDGQRVYDDVDASLFVDINNLLHSKVKVVPNLYVVV--VESDADRAN 2577 Query 2525 AKSASVYYSQLMCQPILLLDQALVSDVGDSTEVSVKMFDAYVDTFSATFSVPMEKLKALV 2584 +A V+Y+Q + +PILL+D+ L++ + V+ MFD YVDTF + F V + V Sbjct 2578 FLNAVVFYAQSLYRPILLVDKKLITTACNGISVTQIMFDVYVDTFMSHFDVDRKSFNNFV 2637 Query 2585 ATAHSELAKGVALDGVLSTFVSAARQGV-VDTDVDTKDVIECLKLSHHSDIEVTGDSCNN 2643 AH+ L +GV L+ VL TFV R+ +D+DV+T+ + + + + + +E T ++ NN Sbjct 2638 NIAHASLREGVQLEKVLDTFVGCVRKCCSIDSDVETRFITKSMISAVAAGLEFTDENYNN 2697 Query 2644 FMLTYNKVENMTPRDLGACIDCNARHINAQVAKSHNVSLVWNVKDYMSLSEQLRKQIRSA 2703 + TY K +N+ DLG I A+H+ VAK N+S +W + + L+ L+ +++ A Sbjct 2698 LVPTYLKSDNIVAADLGVLIQNGAKHVQGNVAKVANISCIWFIDAFNQLTADLQHKLKKA 2757 Query 2704 AKKNNIPFRLTCATTRQVVNVITTKISLKGGKVVSTWFKLLLKVTLLCVLAALFCYVIMP 2763 K + +LT V ++TT SLKGG V+S +L ++L+C + + ++P Sbjct 2758 CVKTGLKLKLTFNKQEASVPILTTPFSLKGGVVLSNLLYILFFISLICFI---LLWALLP 2814 Query 2764 VHSLSVHDGYTNEIIGYKAIQDGVTRDIVSTDDCFANKHAGFDSWFSQRGGS--YRNDKN 2821 +S+ D + +K I +GV RDI D CFANK FD W+ GS Y N + Sbjct 2815 TYSVYKSDIHLPAYASFKVIDNGVVRDISVNDLCFANKFFQFDQWYESTFGSVYYHNSMD 2874 Query 2822 CPVVAAIITREIGFIVPGLPGTVLRALNGDFLHFLPRVFSAVGNICYTPSKLIEYSDFAT 2881 CP+V A++ +IG + +P VLR LHFL F++ CYTP I Y+DF Sbjct 2875 CPIVVAVMDEDIGSTMFNVPTKVLR-YGFHVLHFLTYAFASDSVQCYTPHIQISYNDFYA 2933 Query 2882 SACVLAAECTIFKDAMGKPVPYCYDTNLLEGSISYSELRPDTRYVLMDGS-IIQFPNTYL 2940 S CVL++ CT+FK G P PYCY +++ + Y+ L P TRY L + + I+FP+ Sbjct 2934 SGCVLSSLCTMFKRGDGTPHPYCYTDGVMKNASLYTSLVPHTRYSLANSNGFIRFPDVIS 2993 Query 2941 EGSVRVVTTFDAEYCRHGTCERSEVGVCLSTSGRWVLNNEHYRALPGVFCGVDAMNLIAN 3000 EG VR+V T YCR G CE +E G+C + + WVLNN++YR++PG FCG D +L Sbjct 2994 EGIVRIVRTRSMTYCRVGACEYAEEGICFNFNSSWVLNNDYYRSMPGTFCGRDFFDLFYQ 3053 Query 3001 IFTPLVQPVGALDVSASVVAGGIIAILVTCAAYYFMKFRRAFGEYNHVVAANALLFLMSF 3060 F+ L++P+ ++AS + G I+AI+V YY +K +RAFG+Y VV N +++ ++F Sbjct 3054 FFSSLIRPIDFFSLTASSIFGAILAIVVVLVFYYLIKLKRAFGDYTSVVVINVIVWCINF 3113 Query 3061 TILCLAPAYSFLPGVYSIFYLYLTFYFTNDVSFLAHLQWFAMFSPIVPFWITAIYVFCIS 3120 +L + Y VY+ FY Y+T YF +++S + HLQW M+ I+PFW YV + Sbjct 3114 LMLFVFQVYPICACVYACFYFYVTLYFPSEISVIMHLQWIVMYGAIMPFWFCVTYVAMVI 3173 Query 3121 LKHFHWFFSNYLKKRVMFNGVTFSTFEEAALCTFLLNKEMYLRLRSETLLPLTQYNRYLA 3180 H W FS Y +K + N + STFEE +L TF++ K+ Y RL++ + YNRYL+ Sbjct 3174 ANHVLWLFS-YCRK-IGVNVCSDSTFEETSLTTFMITKDSYCRLKNS--VSDVAYNRYLS 3229 Query 3181 LYNKYKYFSGALDTTSYREAACCHLAKALNDFS-NSGADVLYQPPQTSITSAVLQSGFRK 3239 LYNKY+Y+SG +DT +YREAAC LAKA+ F+ N+G DVLYQPP S++++ LQSG K Sbjct 3230 LYNKYRYYSGKMDTAAYREAACSQLAKAMETFNHNNGNDVLYQPPTASVSTSFLQSGIVK 3289 Query 3240 MAFPSGKVEGCMVQVTCGTTTLNGLWLDDTVYCPRHVVCTAEDMLNPNYDDLLIRKSNHS 3299 M P+ K+E C+V VT G+ TLNGLWLDD VYCPRHV+C + +M P+Y LL R + Sbjct 3290 MVSPTSKIEPCLVSVTYGSMTLNGLWLDDKVYCPRHVICLSSNMNEPDYSALLCRVTLGD 3349 Query 3300 FLVQAGNVQLRVIGHSMQNCLLRLKVDTSNPKTPKYKFVRIQPGQTFSVLACYNGSPSGV 3359 F + +G + L V+ + MQ C L L V NP TPKY F ++PG+TF+VLA YNG P G Sbjct 3350 FTIMSGRMSLTVVSYQMQGCQLVLTVSLQNPYTPKYTFGVVKPGETFTVLAAYNGRPQGA 3409 Query 3360 YQCAMRPNHTIKGSFLNGSCGSVGFNIDYDCVSFCYMHHMELPTGVHAGTDLEGKFYGPF 3419 + MR ++TIKGSFL GSCGSVG+ + D V F YMH +EL TG H GTD G FYGP+ Sbjct 3410 FHVTMRSSYTIKGSFLCGSCGSVGYVLTGDSVKFVYMHQLELSTGCHTGTDFNGNFYGPY 3469 Query 3420 VDRQTAQAAGTDTTITLNVLAWLYAAVINGDRWFLNRFTTTLNDFNLVAMKYNYEPLTQD 3479 D Q Q D T+NV+AWLYAA++N WF+ ++ DFN+ AM + + D Sbjct 3470 RDAQVVQLPVKDYVQTVNVIAWLYAAILNNCAWFVQNDVCSIEDFNVWAMTNGFSQVKAD 3529 Query 3480 HVDILGPLSAQTGIAVLDMCAALKELLQNGMNGRTILGSTILEDEFTPFDVVRQCSGVTF 3539 V L L++ TG+++ + AA+K L G GR ILGS EDE P DV +Q +GV Sbjct 3530 LV--LDALASMTGVSIETLLAAIKRLYM-GFQGRQILGSCTFEDELAPSDVYQQLAGVKL 3586 Query 3540 QGKFKKIVKGTHHWMLL-TFLTSLLILVQSTQWSLFFFVYENAFLPFALGIMAVAACAML 3598 Q K K+ +K T +W+L+ TFL S I+ +W++F ++ + L ++ + ML Sbjct 3587 QSKTKRFIKETIYWILISTFLFS-CIISAFVKWTIFMYI-NTHMIGVTLCVLCFVSFMML 3644 Query 3599 LVKHKHAFLCLFLLPSLATVAYFN-MVYMPASWVMRIMTWLELADTSLSGYRLKDCVMYA 3657 LVKHKH +L ++++P L T+ Y N +V + WL +++ + + V Y Sbjct 3645 LVKHKHFYLTMYIIPVLCTLFYVNYLVVYKEGFRGFTYVWLSHFVPAVNFTYVYE-VFYG 3703 Query 3658 SAL-VLLILMTARTVYDDAARRVWTLMNVITLVYKVYYGNSLDQAISMWALVISVTSNYS 3716 L V I +T ++ D ++ + ++TL+ Y+G++L++ + ++ T + Sbjct 3704 CILCVFAIFITMHSINHDIFSLMFLVGRIVTLISMWYFGSNLEEDVLLFITAFLGTYTW- 3762 Query 3717 GVVTTIMFLARA-IVFVCVEYYPLLFITGNTLQCIMLVYCFLGYCCCCYFGLFCLLNRYF 3775 TTI+ LA A IV + F ++ I+L Y F+GY CY+G F LLN F Sbjct 3763 ---TTILSLAIAKIVANWLSVNIFYFTDVPYIKLILLSYLFIGYILSCYWGFFSLLNSVF 3819 Query 3776 RLTLGVYDYLVSTQEFRYMNSQGLLPPKSSIDAFKLNIKLLGIGGKPCIKVATVQSKMSD 3835 R+ +GVY+Y +S QE RYMN+ GL PP++S +A LN+KLLGIGG P I+V+ +QSK++D Sbjct 3820 RMPMGVYNYKISVQELRYMNANGLRPPRNSFEAILLNLKLLGIGGVPVIEVSQIQSKLTD 3879 Query 3836 VKCTSVVLLSVLQQLRVESSSKLWAQCVQLHNDILLAKDTTEAFEKMVSLLSVLLSMQGA 3895 VKC +VVLL+ LQ L V S+SKLW C LHN+IL D + AF+K+ LL VL S A Sbjct 3880 VKCANVVLLNCLQHLHVASNSKLWQYCSVLHNEILSTSDLSVAFDKLAQLLIVLFSNPAA 3939 Query 3896 VD------INKLCEEMLDNRATLQAIASEFSSLPSYAAYATAQEAYEQAVSNGD-SEVVL 3948 VD I+++ ++ + + LQA+ SEF ++ S+ Y A++ A ++G ++ + Sbjct 3940 VDTKCLASIDEVSDDYVQDSTVLQALQSEFVNMASFVEYEVAKKNLADAKNSGSVNQQQI 3999 Query 3949 KKLKKSLNVAKSEFDHDAAMQRKLEKMADQAMTQMYKQARSEDKRAKVTSAMQTMLFTML 4008 K+L+K+ N+AKS ++ D A+ RKLE+MAD A+T MYK+AR DK++KV SA+QTMLF+M+ Sbjct 4000 KQLEKACNIAKSVYERDKAVARKLERMADLALTNMYKEARINDKKSKVVSALQTMLFSMV 4059 Query 4009 RKLDNDALNNIINNARDGCVPLNIIPLTTAAKLMVVVPDYGTYKNTCDGNTFTYASALWE 4068 RKLDN ALN+I++NA GCVPL+ IP A L +++PD + D TYA ++W Sbjct 4060 RKLDNQALNSILDNAVKGCVPLSAIPALAANTLTIIIPDKQVFDKVVDNVYVTYAGSVWH 4119 Query 4069 IQQVVDADSKIVQLSEINMDNSPNLAWPLIVTALRANSAVK--LQNNELSPVALRQMSCA 4126 IQ V DAD QL++I++D++ WPL++ A R N +QNNEL P L+ Sbjct 4120 IQTVQDADGINKQLTDISVDSN----WPLVIIANRYNEVANAVMQNNELMPHKLKIQVVN 4175 Query 4127 AGT-----TQTACTDDNALAYYNNAKGGRFVLALLSDHQDLKWARFPKSDGTGTIYTELE 4181 +G+ T C YYNN GR V A+LSD LK+ + K DG + EL+ Sbjct 4176 SGSDINCNIPTQC-------YYNNVSSGRIVYAVLSDVDGLKYTKIMKDDGNCVV-LELD 4227 Query 4182 PPCRFVTDTPKGPKVKYLYFIKGLNNLNRGMVLGSLAATVRLQAGNATEVPANSTVLSFC 4241 PPC+F KG K+KYLYFIKG N L RG V+G+L++T+RLQAG ATE ANS++LS C Sbjct 4228 PPCKFSIQDVKGLKIKYLYFIKGCNTLARGWVVGTLSSTIRLQAGVATEYAANSSILSLC 4287 Query 4242 AFAVDPAKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPEANMDQESFGGASCCLYC 4301 AF+VDP K Y DY+ GG PI NCVKMLC H GTG AIT+ PEA ++Q+S+GGAS C+YC Sbjct 4288 AFSVDPKKTYLDYIQQGGVPIINCVKMLCDHAGTGMAITIKPEATINQDSYGGASVCIYC 4347 Query 4302 RCHIDHPNPKGFCDLKGKYVQIPTTCANDPVGFTLRNTVCTVCGMWKGYGCSCDQLREPM 4361 R ++HP+ G C L+GK+VQ+P DP+ + L + VC VCG W+ CSC Sbjct 4348 RARVEHPDVDGICKLRGKFVQVPLG-IKDPILYVLTHDVCQVCGFWRDGSCSCVG-SSVA 4405 Query 4362 MQSADASTFLNGFAV 4376 +QS D + FLNG V Sbjct 4406 VQSKDLN-FLNGLGV 4419 Range 2: 1308 to 1464 Score:91.3 bits(225), Expect:2e-16, Method:Compositional matrix adjust., Identities:57/157(36%), Positives:82/157(52%), Gaps:2/157(1%) Query 1005 LKLTDNVAIKCIDIVKEAQSAKPTVIVNAANTHLKHGGGVAGALNKATNGAMQNESDEYI 1064 L +T NV DI+ A+ K VIVN AN H+ HGGGVA A+ A E+ + Sbjct 1308 LCITPNVCFVKGDIINVARLVKADVIVNPANGHMLHGGGVAKAIAVAAGKKFSKETAAMV 1367 Query 1065 RQNGPLTVGGSCLLSGHNLAEKCLHVVGPNL--NAGEDVQLLKRAYENFNSQDVLLAPLL 1122 + G VG + +G L + L++VGP+ + + LL RAY++ N+ D L+ L+ Sbjct 1368 KSKGVCQVGDCYVSTGGKLCKTILNIVGPDARQDGRQSYVLLARAYKHLNNYDCCLSTLI 1427 Query 1123 SAGIFGAKPLQSLKMCVEIVRTQVYLAVNDKSLYDQI 1159 SAGIF SL + +V QV L N+K +D I Sbjct 1428 SAGIFSVPADVSLTYLLGVVDKQVILVSNNKEDFDII 1464 Range 3: 620 to 937 Score:68.6 bits(166), Expect:2e-09, Method:Compositional matrix adjust., Identities:88/362(24%), Positives:152/362(41%), Gaps:65/362(17%) Query 605 LVQQTMQWLSNMLGTAVDKLKPVFTWVEAKLSAGVEFLRDAWEILKFLITGVFDVIKGQI 664 LV + + W + ML D P W +L L+ G F V + + Sbjct 620 LVNKMVNWFNTML----DASAPATGW-----------------LLYQLLNGFFVVSQANL 658 Query 665 QVATDNIKECVKIFLGVVNKALEMCLDQVTIAGTK----LRALN-----LGEVFIAQSRG 715 I + KI + ++ L+ VT+ K L+ +N +G F S G Sbjct 659 NFVA-LIPDYAKILVNKFYTFFKLLLECVTVDVLKDMPVLKTINGLVCIVGNKFYNVSTG 717 Query 716 LYRQCIRGKEQLQLLMPLKA-PKEVTFLEGDAHDTVLTSEEVVLKSGELEALETPIDSF- 773 L I G ++P A +++ F EG +E V+++ +E +++ + S+ Sbjct 718 L----IPG-----FVLPCNAQEQQIYFFEG-------VAESVIVEDDVIENVKSSLSSYE 761 Query 774 --TSGAVVGTPVCINGLMLLELENKEQYCALSPGLLATNNVFRLKGG--APVKG--VTFG 827 V I+ + + + +K P ++ N+ L P G V F Sbjct 762 YCQPPKSVEKICIIDNMYMGKCGDK-----FFPIVMNDKNICLLDHAWRFPCAGRKVNFN 816 Query 828 ED-TVLEVQGYKNVKITFELDVRVDKVLNEKCSVYTVESGTEVTEFACVVAEAVVKTLQP 886 E V+E+ VK+ F+LD D +L + CS + VE G V +F VV +A+ L Sbjct 817 EKPVVMEIPSLMTVKVMFDLDSTFDDILGKVCSEFEVEKGVTVDDFVAVVCDAIENALNS 876 Query 887 VSD---LLTPMGIDLDEWSVATFYLFDDAGEEKLSSRMYCSFYPPDEEEDCEECEDEEET 943 + + + L++ + YLFD+AG+E ++SRMYC+F ++ ED E E+T Sbjct 877 CKEHPVVGYQVRAFLNKLNENVVYLFDEAGDEAMASRMYCTF-AIEDVEDVISSEAVEDT 935 Query 944 CE 945 + Sbjct 936 ID 937 >RecName: Full=Replicase polyprotein 1a; Short=pp1a; AltName: Full=ORF1a polyprotein; Contains: RecName: Full=Non-structural protein 1; Short=nsp1; AltName: Full=p28; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p65; Contains: RecName: Full=Papain-like protease nsp3; Short=PL-PRO; AltName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=PL1-PRO/PL2-PRO; AltName: Full=PL1/PL2; AltName: Full=PL2-PRO; AltName: Full=Papain-like proteinases 1/2; AltName: Full=p210; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; AltName: Full=Peptide HD2; AltName: Full=p44; Contains: RecName: Full=3C-like proteinase nsp5; Short=3CL-PRO; Short=3CLp; AltName: Full=M-PRO; AltName: Full=nsp5; AltName: Full=p27; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; AltName: Full=p10; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; AltName: Full=p22; Contains: RecName: Full=RNA-capping enzyme subunit nsp9; AltName: Full=Non-structural protein 9; Short=nsp9; AltName: Full=p12; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; AltName: Full=p15; Contains: RecName: Full=Non-structural protein 11; Short=nsp11 [Human coronavirus HKU1 (isolate N1)] Sequence ID: P0C6U3.1 Length: 4471 Range 1: 1650 to 4469 Score:1815 bits(4700), Expect:0.0, Method:Compositional matrix adjust., Identities:1076/2890(37%), Positives:1588/2890(54%), Gaps:120/2890(4%) Query 1537 KTIKVFTTVDNTNLHTHIVDMSMTYGQQFGPTYLDGADVTKIKPHVNHEGKTFFVLPSDD 1596 K I V TVD N + + + +G+ G + DG DVTK+K + K + + Sbjct 1650 KKIDVLLTVDGVNFKSISLTVGEVFGKILGNVFCDGIDVTKLKCSDFYADKILYQYENLS 1709 Query 1597 TLRSEAFEYYHTIDESFLGRYMSALNHTKKWKFPQVGGLTSIKWADNNCYLSSVLLALQQ 1656 A + D+ L Y + L KW G S + + NNCY++ L LQ Sbjct 1710 LADISAVQSSFGFDQQQLLAYYNFLT-VCKWSVVVNGPFFSFEQSHNNCYVNVACLMLQH 1768 Query 1657 VEVKFNAPALQEAYYRARAGDAANFCALILAYSNKTVGELGDVRETMTHLLQHANLESAK 1716 + +KFN QEA+Y RAG AL+LA + E D + + +L+ A+L A Sbjct 1769 INLKFNKWQWQEAWYEFRAGRPHRLVALVLAKGHFKFDEPSDATDFIRVVLKQADLSGAI 1828 Query 1717 RVLNVVCKHCGQKTTTLKGVEAVMYMGTLSYDELKTGVSIPCVC-GRNATQYLVQQESSF 1775 L ++C CG K + GV+AVM+ GTL+ +L G I C C GR + + F Sbjct 1829 CELELICD-CGIKQESRVGVDAVMHFGTLAKTDLFNGYKIGCNCAGR--IVHCTKLNVPF 1885 Query 1776 VMMSAPPAEYKLQQGAFLCANEYTGNYQCGHYTHITAKETLYRVDGAHLTKMSEYKGPVT 1835 ++ S P L + AN + G GHYTH+ D + K + G +T Sbjct 1886 LICSNTPLSKDLPDDV-VAANMFMG-VGVGHYTHLKCGSPYQHYDACSVKKYTGVSGCLT 1943 Query 1836 DVFY-KETSYTTAIKPVSYKLDGVTYTEIEPKLDGYYKKGNAYYTEQPIDLVPTQPMPNA 1894 D Y K + T +Y LD V P L YY YYT +PI + Q P A Sbjct 1944 DCLYLKNLTQTFTSMLTNYFLDDVEMVAYNPDLSQYYCDNGKYYT-KPI--IKAQFKPFA 2000 Query 1895 SFD----NFKLTCSNTKFADDLNQMTGFKKPAS-RELTVTFFPDLNGDVVAIDYRHYSTS 1949 D NFKL + LN GF E VT +P GDVV Y Sbjct 2001 KVDGVYTNFKLVGHDI--CAQLNDKLGFNVDLPFVEYKVTVWPVATGDVVLASDDLYVKR 2058 Query 1950 FKKGAKLVHKPILW--HINQTTNKTTY--KPNIWCLRCLWSTKPVDTSNSFEVLVVEDTQ 2005 + KG + KP++W H + N TY KP+ + N + VL V Sbjct 2059 YFKGCETFGKPVIWFCHDEASLNSLTYFNKPSF------------KSENRYSVLSV---- 2102 Query 2006 GMDNLACESQTTTSEEVVENPTVQKEI-IECDVKTTEVVGNVILKPSEEGVKVTQELGHE 2064 D+++ ESQ V+E+ KE+ ++ KT ++ +I+ +KV + L Sbjct 2103 --DSVSEESQGNVVTSVMESQISTKEVKLKGVRKTVKIEDAIIVNDENSSIKVVKSLSLV 2160 Query 2065 DLMAAYVEETSITIKKPNELSLALGLKTLATHGAAAINSVPWSKILAYVKPFLGQTAVIT 2124 D+ Y+ + NELS + T+ + I + L ++ QT ++ Sbjct 2161 DVWDMYLTGCDYVVWVANELSRLVKSPTVREYIRYGIKPITIPIDLLCLRD-DNQTLLVP 2219 Query 2125 SNCIKKCVQRVFSNYMPYVITLLFQLCTFTKSTNSRIKASLPTTIAKNSVKSVAKLCLDV 2184 + ++ F ++ ++ +F L FT T IA ++ L L Sbjct 2220 KIFKARAIE--FYGFLKWLFIYVFSLLHFTNDKT----IFYTTEIASKFTFNLFCLALKN 2273 Query 2185 CINYVKSPKFSKLFTIV-----MWL--LLLSICLGSL---------TYVTAVLGVCLSSL 2228 + F K F +V W L +++ +V ++ ++ Sbjct 2274 AFQTFRWSIFIKGFLVVATVFLFWFNFLYINVIFSDFYLPNISVFPIFVGRIVMWIKATF 2333 Query 2229 GVPSYCDGVRELYINSSNVTTMDFCQGYFPCSVCLSGLDSLDSYPALETIQVTISSYKL- 2287 G+ + CD +L + T FC G F C +C SG D LD+Y A++ +Q + L Sbjct 2334 GLVTICDFYSKLGVG----FTSHFCNGSFICELCHSGFDMLDTYAAIDFVQYEVDRRVLF 2389 Query 2288 -DLTFLGLAAEWLLAYMLFTKFFYLLGLSAIMQAFFGYFASHFISNS--WLMWFIISIVQ 2344 ++ + L E ++ Y L+T +FY L +Q F + F+ + WL+ FI+ + Sbjct 2390 DYVSLVKLIVELVIGYSLYTVWFYPLFCLIGLQLFTTWLPDLFMLETMHWLIRFIVFVAN 2449 Query 2345 MAPVSAMVRMYIFFASFYYVWKSYVHIMDGCTSSTCMMCYKRNRATRVECTTIVNGVKRS 2404 M P ++R YI + Y V HI+ GC + C+ CYKRN + RV+C+TIV GV R Sbjct 2450 MLPAFVLLRFYIVVTAMYKVVGFIRHIVYGCNKAGCLFCYKRNCSVRVKCSTIVGGVIRY 2509 Query 2405 FYVYANGGRGFCKAHNWNCLNCDTFCAGSTFISDEVARDLSLQFKRPINPTDQSAYVVDS 2464 + + ANGG GFC H WNC NC +F G+TFI+ E A +LS + KRP+NPTD S YVV Sbjct 2510 YDITANGGTGFCVKHQWNCFNCHSFKPGNTFITVEAAIELSKELKRPVNPTDASHYVVTD 2569 Query 2465 VTVKNGALHLYFDKAGQKTYERHPLSHFVNLDNLRANNTKGSLPINVIVFDGKSKCEESA 2524 + + L++D+ GQ+ Y+ S FV+++NL + K + V+V +S + + Sbjct 2570 IKQVGCMMRLFYDRDGQRVYDDVDASLFVDINNLLHSKVKVVPNLYVVV--VESDADRAN 2627 Query 2525 AKSASVYYSQLMCQPILLLDQALVSDVGDSTEVSVKMFDAYVDTFSATFSVPMEKLKALV 2584 +A V+Y+Q + +PILL+D+ L++ + V+ MFD YVDTF + F V + V Sbjct 2628 FLNAVVFYAQSLYRPILLVDKKLITTACNGISVTQTMFDVYVDTFMSHFDVDRKSFNNFV 2687 Query 2585 ATAHSELAKGVALDGVLSTFVSAARQGV-VDTDVDTKDVIECLKLSHHSDIEVTGDSCNN 2643 AH+ L +GV L+ VL TFV R+ +D+DV+T+ + + + + + +E T ++ NN Sbjct 2688 NIAHASLREGVQLEKVLDTFVGCVRKCCSIDSDVETRFITKSMISAVAAGLEFTDENYNN 2747 Query 2644 FMLTYNKVENMTPRDLGACIDCNARHINAQVAKSHNVSLVWNVKDYMSLSEQLRKQIRSA 2703 + TY K +N+ DLG I A+H+ VAK+ N+S +W + + L+ L+ +++ A Sbjct 2748 LVPTYLKSDNIVAADLGVLIQNGAKHVQGNVAKAANISCIWFIDAFNQLTADLQHKLKKA 2807 Query 2704 AKKNNIPFRLTCATTRQVVNVITTKISLKGGKVVSTWFKLLLKVTLLCVLAALFCYVIMP 2763 K + +LT V ++TT SLKGG V+S +L V+L+C + + ++P Sbjct 2808 CVKTGLKLKLTFNKQEASVPILTTPFSLKGGVVLSNLLYILFFVSLICFI---LLWALLP 2864 Query 2764 VHSLSVHDGYTNEIIGYKAIQDGVTRDIVSTDDCFANKHAGFDSWFSQRGGS--YRNDKN 2821 +S+ D + +K I +GV RDI D CFANK FD W+ GS Y N + Sbjct 2865 TYSVYKSDIHLPAYASFKVIDNGVVRDISVNDLCFANKFFQFDQWYESTFGSVYYHNSMD 2924 Query 2822 CPVVAAIITREIGFIVPGLPGTVLRALNGDFLHFLPRVFSAVGNICYTPSKLIEYSDFAT 2881 CP+V A++ +IG + +P VLR LHFL F++ CYTP I Y+DF Sbjct 2925 CPIVVAVMDEDIGSTMFNVPTKVLRH-GFHVLHFLTYAFASDSVQCYTPHIQISYNDFYA 2983 Query 2882 SACVLAAECTIFKDAMGKPVPYCYDTNLLEGSISYSELRPDTRYVLMDGS-IIQFPNTYL 2940 S CVL++ CT+FK G P PYCY +++ + Y+ L P TRY L + + I+FP+ Sbjct 2984 SGCVLSSLCTMFKRGDGTPHPYCYSDGVMKNASLYTSLVPHTRYSLANSNGFIRFPDVIS 3043 Query 2941 EGSVRVVTTFDAEYCRHGTCERSEVGVCLSTSGRWVLNNEHYRALPGVFCGVDAMNLIAN 3000 EG VR+V T YCR G CE +E G+C + + WVLNN++YR++PG FCG D +L Sbjct 3044 EGIVRIVRTRSMTYCRVGACEYAEEGICFNFNSSWVLNNDYYRSMPGTFCGRDLFDLFYQ 3103 Query 3001 IFTPLVQPVGALDVSASVVAGGIIAILVTCAAYYFMKFRRAFGEYNHVVAANALLFLMSF 3060 F+ L++P+ ++AS + G I+AI+V YY +K +RAFG+Y VV N +++ ++F Sbjct 3104 FFSSLIRPIDFFSLTASSIFGAILAIVVVLVFYYLIKLKRAFGDYTSVVVINVVVWCINF 3163 Query 3061 TILCLAPAYSFLPGVYSIFYLYLTFYFTNDVSFLAHLQWFAMFSPIVPFWITAIYVFCIS 3120 +L + Y VY+ FY Y+T YF +++S + HLQW M+ I+PFW YV + Sbjct 3164 LMLFVFQVYPICACVYACFYFYVTLYFPSEISVIMHLQWIVMYGAIMPFWFCVTYVAMVI 3223 Query 3121 LKHFHWFFSNYLKKRVMFNGVTFSTFEEAALCTFLLNKEMYLRLRSETLLPLTQYNRYLA 3180 H W FS Y +K + N + STFEE +L TF++ K+ Y RL++ + YNRYL+ Sbjct 3224 ANHVLWLFS-YCRK-IGVNVCSDSTFEETSLTTFMITKDSYCRLKNS--VSDVAYNRYLS 3279 Query 3181 LYNKYKYFSGALDTTSYREAACCHLAKALNDFS-NSGADVLYQPPQTSITSAVLQSGFRK 3239 LYNKY+Y+SG +DT +YREAAC LAKA+ F+ N+G DVLYQPP S++++ LQSG K Sbjct 3280 LYNKYRYYSGKMDTAAYREAACSQLAKAMETFNHNNGNDVLYQPPTASVSTSFLQSGIVK 3339 Query 3240 MAFPSGKVEGCMVQVTCGTTTLNGLWLDDTVYCPRHVVCTAEDMLNPNYDDLLIRKSNHS 3299 M P+ K+E C+V VT G+ TLNGLWLDD VYCPRHV+C++ +M P+Y LL R + Sbjct 3340 MVSPTSKIEPCIVSVTYGSMTLNGLWLDDKVYCPRHVICSSSNMNEPDYSALLCRVTLGD 3399 Query 3300 FLVQAGNVQLRVIGHSMQNCLLRLKVDTSNPKTPKYKFVRIQPGQTFSVLACYNGSPSGV 3359 F + +G + L V+ + MQ C L L V NP TPKY F ++PG+TF+VLA YNG P G Sbjct 3400 FTIMSGRMSLTVVSYQMQGCQLVLTVSLQNPYTPKYTFGNVKPGETFTVLAAYNGRPQGA 3459 Query 3360 YQCAMRPNHTIKGSFLNGSCGSVGFNIDYDCVSFCYMHHMELPTGVHAGTDLEGKFYGPF 3419 + MR ++TIKGSFL GSCGSVG+ + D V F YMH +EL TG H GTD G FYGP+ Sbjct 3460 FHVTMRSSYTIKGSFLCGSCGSVGYVLTGDSVKFVYMHQLELSTGCHTGTDFTGNFYGPY 3519 Query 3420 VDRQTAQAAGTDTTITLNVLAWLYAAVINGDRWFLNRFTTTLNDFNLVAMKYNYEPLTQD 3479 D Q Q D T+NV+AWLYAA++N WF+ + DFN+ AM + + D Sbjct 3520 RDAQVVQLPVKDYVQTVNVIAWLYAAILNNCAWFVQNDVCSTEDFNVWAMANGFSQVKAD 3579 Query 3480 HVDILGPLSAQTGIAVLDMCAALKELLQNGMNGRTILGSTILEDEFTPFDVVRQCSGVTF 3539 V L L++ TG+++ + AA+K L G GR ILGS EDE P DV +Q +GV Sbjct 3580 LV--LDALASMTGVSIETLLAAIKRLYM-GFQGRQILGSCTFEDELAPSDVYQQLAGVKL 3636 Query 3540 QGKFKKIVKGTHHWMLL-TFLTSLLILVQSTQWSLFFFVYENAFLPFALGIMAVAACAML 3598 Q K K+ +K T +W+L+ TFL S I+ +W++F ++ + L ++ + ML Sbjct 3637 QSKTKRFIKETIYWILISTFLFS-CIISAFVKWTIFMYI-NTHMIGVTLCVLCFVSFMML 3694 Query 3599 LVKHKHAFLCLFLLPSLATVAYFN-MVYMPASWVMRIMTWLELADTSLSGYRLKDCVMYA 3657 LVKHKH +L ++++P L T+ Y N +V + WL +++ + + V Y Sbjct 3695 LVKHKHFYLTMYIIPVLCTLFYVNYLVVYKEGFRGFTYVWLSYFVPAVNFTYVYE-VFYG 3753 Query 3658 SAL-VLLILMTARTVYDDAARRVWTLMNVITLVYKVYYGNSLDQAISMWALVISVTSNYS 3716 L V I +T ++ D ++ + ++TL+ Y+G++L++ + ++ T + Sbjct 3754 CILCVFAIFITMHSINHDIFSLMFLVGRIVTLISMWYFGSNLEEDVLLFITAFLGTYTW- 3812 Query 3717 GVVTTIMFLARA-IVFVCVEYYPLLFITGNTLQCIMLVYCFLGYCCCCYFGLFCLLNRYF 3775 TTI+ LA A IV + F ++ I+L Y F+GY CY+G F LLN F Sbjct 3813 ---TTILSLAIAKIVANWLSVNIFYFTDVPYIKLILLSYLFIGYILSCYWGFFSLLNSVF 3869 Query 3776 RLTLGVYDYLVSTQEFRYMNSQGLLPPKSSIDAFKLNIKLLGIGGKPCIKVATVQSKMSD 3835 R+ +GVY+Y +S QE RYMN+ GL PP++S +A LN+KLLGIGG P I+V+ +QSK++D Sbjct 3870 RMPMGVYNYKISVQELRYMNANGLRPPRNSFEAILLNLKLLGIGGVPVIEVSQIQSKLTD 3929 Query 3836 VKCTSVVLLSVLQQLRVESSSKLWAQCVQLHNDILLAKDTTEAFEKMVSLLSVLLSMQGA 3895 VKC +VVLL+ LQ L V S+SKLW C LHN+IL D + AF+K+ LL VL + A Sbjct 3930 VKCANVVLLNCLQHLHVASNSKLWQYCSVLHNEILSTSDLSVAFDKLAQLLIVLFANPAA 3989 Query 3896 VD------INKLCEEMLDNRATLQAIASEFSSLPSYAAYATAQEAYEQAVSNGD-SEVVL 3948 VD I+++ ++ + + LQA+ SEF ++ S+ Y A++ A ++G ++ + Sbjct 3990 VDTKCLASIDEVSDDYVQDSTVLQALQSEFVNMASFVEYEVAKKNLADAKNSGSVNQQQI 4049 Query 3949 KKLKKSLNVAKSEFDHDAAMQRKLEKMADQAMTQMYKQARSEDKRAKVTSAMQTMLFTML 4008 K+L+K+ N+AKS ++ D A+ RKLE+MAD A+T MYK+AR DK++KV SA+QTMLF+M+ Sbjct 4050 KQLEKACNIAKSVYERDKAVARKLERMADLALTNMYKEARINDKKSKVVSALQTMLFSMV 4109 Query 4009 RKLDNDALNNIINNARDGCVPLNIIPLTTAAKLMVVVPDYGTYKNTCDGNTFTYASALWE 4068 RKLDN ALN+I++NA GCVPL+ IP A L +V+PD + D TYA ++W Sbjct 4110 RKLDNQALNSILDNAVKGCVPLSAIPALAANTLTIVIPDKQVFDKVVDNVYVTYAGSVWH 4169 Query 4069 IQQVVDADSKIVQLSEINMDNSPNLAWPLIVTALRANSAVK--LQNNELSPVALRQMSCA 4126 IQ V DAD QL++I++D++ WPL++ A R N +QNNEL P L+ Sbjct 4170 IQTVQDADGINKQLTDISVDSN----WPLVIIANRYNEVANAVMQNNELMPHKLKIQVVN 4225 Query 4127 AGTTQTACTDDNALAYYNNAKGGRFVLALLSDHQDLKWARFPKSDGTGTIYTELEPPCRF 4186 +G+ + YYNN GR V A+LSD LK+ + K DG + EL+PPC+F Sbjct 4226 SGSDMNC--NIPTQCYYNNGSSGRIVYAVLSDVDGLKYTKIMKDDGNCVV-LELDPPCKF 4282 Query 4187 VTDTPKGPKVKYLYFIKGLNNLNRGMVLGSLAATVRLQAGNATEVPANSTVLSFCAFAVD 4246 KG K+KYLYFIKG N L RG V+G+L++T+RLQAG ATE ANS++LS CAF+VD Sbjct 4283 SIQDVKGLKIKYLYFIKGCNTLARGWVVGTLSSTIRLQAGVATEYAANSSILSLCAFSVD 4342 Query 4247 PAKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPEANMDQESFGGASCCLYCRCHID 4306 P K Y DY+ GG PI NCVKMLC H GTG AIT+ PEA ++Q+S+GGAS C+YCR ++ Sbjct 4343 PKKTYLDYIQQGGVPIINCVKMLCDHAGTGMAITIKPEATINQDSYGGASVCIYCRARVE 4402 Query 4307 HPNPKGFCDLKGKYVQIPTTCANDPVGFTLRNTVCTVCGMWKGYGCSCDQLREPMMQSAD 4366 HP+ G C L+GK+VQ+P DP+ + L + VC VCG W+ CSC +QS D Sbjct 4403 HPDVDGICKLRGKFVQVPLG-IKDPILYVLTHDVCQVCGFWRDGSCSCVG-SSVAVQSKD 4460 Query 4367 ASTFLNGFAV 4376 + FLNGF V Sbjct 4461 LN-FLNGFGV 4469 Range 2: 1358 to 1514 Score:91.3 bits(225), Expect:2e-16, Method:Compositional matrix adjust., Identities:57/157(36%), Positives:82/157(52%), Gaps:2/157(1%) Query 1005 LKLTDNVAIKCIDIVKEAQSAKPTVIVNAANTHLKHGGGVAGALNKATNGAMQNESDEYI 1064 L +T NV DI+ A+ K VIVN AN H+ HGGGVA A+ A E+ + Sbjct 1358 LCITPNVCFVKGDIINVARLVKADVIVNPANGHMLHGGGVAKAIAVAAGKKFSKETAAMV 1417 Query 1065 RQNGPLTVGGSCLLSGHNLAEKCLHVVGPNL--NAGEDVQLLKRAYENFNSQDVLLAPLL 1122 + G VG + +G L + L++VGP+ + + LL RAY++ N+ D L+ L+ Sbjct 1418 KSKGVCQVGDCYVSTGGKLCKTILNIVGPDARQDGRQSYVLLARAYKHLNNYDCCLSTLI 1477 Query 1123 SAGIFGAKPLQSLKMCVEIVRTQVYLAVNDKSLYDQI 1159 SAGIF SL + +V QV L N+K +D I Sbjct 1478 SAGIFSVPADVSLTYLLGVVDKQVILVSNNKEDFDII 1514 Range 3: 620 to 937 Score:68.6 bits(166), Expect:1e-09, Method:Compositional matrix adjust., Identities:83/352(24%), Positives:146/352(41%), Gaps:45/352(12%) Query 605 LVQQTMQWLSNMLGTAVDKLKPVFTWVEAKLSAGVEFLRDAWEILKFLITGVFDVIKGQI 664 LV + + W + ML D P W+ +L G+ + A LI ++ + Sbjct 620 LVNKMVNWFNTML----DASAPATGWLLYQLLNGLFVVSQANFNFVALIPDYAKILVNKF 675 Query 665 QVATDNIKECVKIFLGVVNKALEMCLDQVTIAGTKLRALNLGEVFIAQSRGLYRQCIRGK 724 + ECV + + L+ V I G K ++ G + G C + Sbjct 676 YTFFKLLLECVTVDVLKDMPVLKTINGLVCIVGNKFYNVSTGLI-----PGFVLPC-NAQ 729 Query 725 EQLQLLMPLKAPKEVTFLEGDAHDTVLTSEEVVLKSGELEALETPIDSF---TSGAVVGT 781 EQ ++ F EG +E V+++ +E +++ + S+ V Sbjct 730 EQ-----------QIYFFEG-------VAESVIVEDDVIENVKSSLSSYEYCQPPKSVEK 771 Query 782 PVCINGLMLLELENKEQYCALSPGLLATNNVFRLKGG--APVKG--VTFGED-TVLEVQG 836 I+ + + + +K P ++ N+ L P G V F E V+E+ Sbjct 772 ICIIDNMYMGKCGDK-----FFPIVMNDKNICLLDQAWRFPCAGRKVNFNEKPVVMEIPS 826 Query 837 YKNVKITFELDVRVDKVLNEKCSVYTVESGTEVTEFACVVAEAVVKTLQPVSD---LLTP 893 VK+ F+LD D +L + CS + VE G V +F VV +A+ L + + Sbjct 827 LMTVKVMFDLDSTFDDILGKVCSEFEVEKGVTVDDFVAVVCDAIENALNSCKEHPVVGYQ 886 Query 894 MGIDLDEWSVATFYLFDDAGEEKLSSRMYCSFYPPDEEEDCEECEDEEETCE 945 + L++ + YLFD+AG+E ++SRMYC+F ++ ED E E+T + Sbjct 887 VRAFLNKLNENVVYLFDEAGDEAMASRMYCTF-AIEDVEDVISSEAVEDTID 937 >RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Host translation inhibitor nsp1; Short=nsp1; AltName: Full=p28; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p65; Contains: RecName: Full=Papain-like proteinase nsp3; Short=PL-PRO; AltName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=p210; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; AltName: Full=Peptide HD2; AltName: Full=p44; Contains: RecName: Full=3C-like proteinase nsp5; Short=3CL-PRO; Short=3CLp; AltName: Full=M-PRO; AltName: Full=nsp5; AltName: Full=p27; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; AltName: Full=p10; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; AltName: Full=p22; Contains: RecName: Full=Viral protein genome-linked nsp9; AltName: Full=Non-structural protein 9; Short=nsp9; AltName: Full=RNA-capping enzyme subunit nsp9; AltName: Full=p12; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; AltName: Full=p15; Contains: RecName: Full=RNA-directed RNA polymerase nsp12; Short=Pol; Short=RdRp; AltName: Full=nsp12; AltName: Full=p100; Contains: RecName: Full=Helicase nsp13; Short=Hel; AltName: Full=nsp13; AltName: Full=p67; Contains: RecName: Full=Guanine-N7 methyltransferase nsp14; Short=ExoN; AltName: Full=nsp14; Contains: RecName: Full=Uridylate-specific endoribonuclease nsp15; AltName: Full=NendoU; AltName: Full=nsp15; AltName: Full=p35; Contains: RecName: Full=2'-O-methyltransferase nsp16; AltName: Full=nsp16 [Human coronavirus HKU1 (isolate N2)] Sequence ID: P0C6X3.1 Length: 7152 Range 1: 1620 to 4419 Score:1814 bits(4699), Expect:0.0, Method:Compositional matrix adjust., Identities:1064/2866(37%), Positives:1573/2866(54%), Gaps:114/2866(3%) Query 1537 KTIKVFTTVDNTNLHTHIVDMSMTYGQQFGPTYLDGADVTKIKPHVNHEGKTFFVLPSDD 1596 K I V TVD N + + + +G+ G + DG DVTK+K + K + + Sbjct 1620 KKIDVLLTVDGVNFKSISLTVGEVFGKILGNVFCDGIDVTKLKCSDFYADKILYQYENLS 1679 Query 1597 TLRSEAFEYYHTIDESFLGRYMSALNHTKKWKFPQVGGLTSIKWADNNCYLSSVLLALQQ 1656 A + D+ L Y + L KW G S + + NNCY++ L LQ Sbjct 1680 LADISAVQSSFGFDQQQLLAYYNFLT-VCKWSVVVNGPFFSFEQSHNNCYVNVACLMLQH 1738 Query 1657 VEVKFNAPALQEAYYRARAGDAANFCALILAYSNKTVGELGDVRETMTHLLQHANLESAK 1716 + +KFN QEA+Y RAG AL+LA + E D + + +L+ A+L A Sbjct 1739 INLKFNKWQWQEAWYEFRAGRPHRLVALVLAKGHFKFDEPSDATDFIRVVLKQADLSGAI 1798 Query 1717 RVLNVVCKHCGQKTTTLKGVEAVMYMGTLSYDELKTGVSIPCVC-GRNATQYLVQQESSF 1775 L ++C CG K + GV+AVM+ GTL+ +L G I C C GR + + F Sbjct 1799 CELELICD-CGIKQESRVGVDAVMHFGTLAKTDLFNGYKIGCNCAGR--IVHCTKLNVPF 1855 Query 1776 VMMSAPPAEYKLQQGAFLCANEYTGNYQCGHYTHITAKETLYRVDGAHLTKMSEYKGPVT 1835 ++ S P L + AN + G GHYTH+ D + K + G +T Sbjct 1856 LICSNTPLSKDLPDDV-VAANMFMG-VGVGHYTHLKCGSPYQHYDACSVKKYTGVSGCLT 1913 Query 1836 DVFY-KETSYTTAIKPVSYKLDGVTYTEIEPKLDGYYKKGNAYYTEQPIDLVPTQPMPNA 1894 D Y K + T +Y LD V P L YY YYT +PI + Q P A Sbjct 1914 DCLYLKNLTQTFTSMLTNYFLDDVEMVAYNPDLSQYYCDNGKYYT-KPI--IKAQFKPFA 1970 Query 1895 SFD----NFKLTCSNTKFADDLNQMTGFKKPAS-RELTVTFFPDLNGDVVAIDYRHYSTS 1949 D NFKL + LN GF E VT +P GDVV Y Sbjct 1971 KVDGVYTNFKLVGHD--ICAQLNDKLGFNVDLPFVEYKVTVWPVATGDVVLASDDLYVKR 2028 Query 1950 FKKGAKLVHKPILW--HINQTTNKTTYKPNIWCLRCLWSTKPVDTSNSFEVLVVEDTQGM 2007 + KG + KP++W H + N TY ++ + N + VL V Sbjct 2029 YFKGCETFGKPVIWLCHDEASLNSLTY----------FNKPSFKSENRYSVLSV------ 2072 Query 2008 DNLACESQTTTSEEVVENPTVQKEI-IECDVKTTEVVGNVILKPSEEGVKVTQELGHEDL 2066 D+++ ESQ V+E+ KE+ ++ KT ++ +I+ +KV + L D+ Sbjct 2073 DSVSEESQGNVVTSVMESQISTKEVKLKGVRKTVKIEDAIIVNDENSSIKVVKSLSLVDV 2132 Query 2067 MAAYVEETSITIKKPNELSLALGLKTLATHGAAAINSVPWSKILAYVKPFLGQTAVITSN 2126 Y+ + NELS + T+ + I + L ++ QT ++ Sbjct 2133 WDMYLTGCDYVVWVANELSRLVKSPTVREYIRYGIKPITIPIDLLCLRD-DNQTLLVPK- 2190 Query 2127 CIKKCVQRVFSNYMPYVITLLFQLCTFTKSTNSRIKASLPTTIAKNSVKSVAKLCLDVCI 2186 I K F ++ ++ +F L FT T IA ++ L L Sbjct 2191 -IFKARAIEFYGFLKWLFIYVFSLLHFTNDKT----IFYTTEIASKFTFNLFCLALKNAF 2245 Query 2187 NYVKSPKFSKLFTIV-----MWL--LLLSICLGSL---------TYVTAVLGVCLSSLGV 2230 + F K F +V W L +++ +V ++ ++ G+ Sbjct 2246 QTFRWSIFIKGFLVVATVFLFWFNFLYINVIFSDFYLPNISVFPIFVGRIVMWIKATFGL 2305 Query 2231 PSYCDGVRELYINSSNVTTMDFCQGYFPCSVCLSGLDSLDSYPALETIQVTISSYKL--D 2288 + CD +L + T FC G F C +C SG D LD+Y A++ +Q + L Sbjct 2306 VTICDFYSKLGVG----FTSHFCNGSFICELCYSGFDMLDTYAAIDFVQYEVDRRVLFDY 2361 Query 2289 LTFLGLAAEWLLAYMLFTKFFYLLGLSAIMQAFFGYFASHFISNS--WLMWFIISIVQMA 2346 ++ + L E ++ Y L+T +FY L +Q F + F+ + WL+ FI+ + M Sbjct 2362 VSLVKLIVELVIGYSLYTVWFYPLFCLIGLQLFTTWLPDLFMLETMHWLIRFIVFVANML 2421 Query 2347 PVSAMVRMYIFFASFYYVWKSYVHIMDGCTSSTCMMCYKRNRATRVECTTIVNGVKRSFY 2406 P ++R YI + Y V HI+ GC + C+ CYKRN + RV+C+TIV GV R + Sbjct 2422 PAFVLLRFYIVVTAMYKVVGFIRHIVYGCNKAGCLFCYKRNCSVRVKCSTIVGGVIRYYD 2481 Query 2407 VYANGGRGFCKAHNWNCLNCDTFCAGSTFISDEVARDLSLQFKRPINPTDQSAYVVDSVT 2466 + ANGG GFC H WNC NC +F G+TFI+ E A +LS + KRP+NPTD S YVV + Sbjct 2482 ITANGGTGFCVKHQWNCFNCHSFKPGNTFITVEAAIELSKELKRPVNPTDASHYVVTDIK 2541 Query 2467 VKNGALHLYFDKAGQKTYERHPLSHFVNLDNLRANNTKGSLPINVIVFDGKSKCEESAAK 2526 + L++D+ GQ+ Y+ S FV+++NL + K + V+V +S + + Sbjct 2542 QVGCMMRLFYDRDGQRVYDDVDASLFVDINNLLHSKVKVVPNLYVVV--VESDADRANFL 2599 Query 2527 SASVYYSQLMCQPILLLDQALVSDVGDSTEVSVKMFDAYVDTFSATFSVPMEKLKALVAT 2586 +A V+Y+Q + +PILL+D+ L++ + V+ MFD YVDTF + F V + V Sbjct 2600 NAVVFYAQSLYRPILLVDKKLITTACNGISVTQTMFDVYVDTFMSHFDVDRKSFNNFVNI 2659 Query 2587 AHSELAKGVALDGVLSTFVSAARQGV-VDTDVDTKDVIECLKLSHHSDIEVTGDSCNNFM 2645 AH+ L +GV L+ VL TFV R+ +D+DV+T+ + + + + + +E T ++ NN + Sbjct 2660 AHASLREGVQLEKVLDTFVGCVRKCCSIDSDVETRFITKSMISAVAAGLEFTDENYNNLV 2719 Query 2646 LTYNKVENMTPRDLGACIDCNARHINAQVAKSHNVSLVWNVKDYMSLSEQLRKQIRSAAK 2705 TY K +N+ DLG I A+H+ VAK+ N+S +W + + L+ L+ +++ A Sbjct 2720 PTYLKSDNIVAADLGVLIQNGAKHVQGNVAKAANISCIWFIDTFNQLTADLQHKLKKACV 2779 Query 2706 KNNIPFRLTCATTRQVVNVITTKISLKGGKVVSTWFKLLLKVTLLCVLAALFCYVIMPVH 2765 K + +LT V ++TT SLKGG V+S +L ++L+C + + ++P + Sbjct 2780 KTGLKLKLTFNKQEASVPILTTPFSLKGGVVLSNLLYILFFISLICFI---LLWALLPTY 2836 Query 2766 SLSVHDGYTNEIIGYKAIQDGVTRDIVSTDDCFANKHAGFDSWFSQRGGS--YRNDKNCP 2823 S+ D + +K I +GV RDI D CFANK FD W+ GS Y N +CP Sbjct 2837 SVYKSDIHLPAYASFKVIDNGVVRDISVNDLCFANKFFQFDQWYESTFGSFYYHNSMDCP 2896 Query 2824 VVAAIITREIGFIVPGLPGTVLRALNGDFLHFLPRVFSAVGNICYTPSKLIEYSDFATSA 2883 +V A++ +IG + +P VLR LHFL F++ CYTP I Y+DF S Sbjct 2897 IVVAVMDEDIGSTMFNVPTKVLRH-GFHVLHFLTYAFASDSVQCYTPHIQISYNDFYASG 2955 Query 2884 CVLAAECTIFKDAMGKPVPYCYDTNLLEGSISYSELRPDTRYVLMDGS-IIQFPNTYLEG 2942 CVL++ CT+FK G P PYCY +++ + Y+ L P TRY L + + I+FP+ EG Sbjct 2956 CVLSSLCTMFKRGDGTPHPYCYSDGVMKNASLYTSLVPHTRYSLANSNGFIRFPDVISEG 3015 Query 2943 SVRVVTTFDAEYCRHGTCERSEVGVCLSTSGRWVLNNEHYRALPGVFCGVDAMNLIANIF 3002 VR+V T YCR G CE +E G+C + + WVLNN++YR++PG FCG D +L F Sbjct 3016 IVRIVRTRSMTYCRVGACEYAEEGICFNFNSSWVLNNDYYRSMPGTFCGRDLFDLFYQFF 3075 Query 3003 TPLVQPVGALDVSASVVAGGIIAILVTCAAYYFMKFRRAFGEYNHVVAANALLFLMSFTI 3062 + L++P+ ++AS + G I+AI+V YY +K +RAFG+Y VV N +++ ++F + Sbjct 3076 SSLIRPIDFFSLTASSIFGAILAIVVVLVFYYLIKLKRAFGDYTSVVVINVIVWCINFLM 3135 Query 3063 LCLAPAYSFLPGVYSIFYLYLTFYFTNDVSFLAHLQWFAMFSPIVPFWITAIYVFCISLK 3122 L + Y VY+ FY Y+T YF +++S + HLQW M+ I+PFW YV + Sbjct 3136 LFVFQVYPICACVYACFYFYVTLYFPSEISVIMHLQWIVMYGAIMPFWFCVTYVAMVIAN 3195 Query 3123 HFHWFFSNYLKKRVMFNGVTFSTFEEAALCTFLLNKEMYLRLRSETLLPLTQYNRYLALY 3182 H W FS Y +K + N STFEE +L TF++ K+ Y RL++ + YNRYL+LY Sbjct 3196 HVLWLFS-YCRK-IGVNVCNDSTFEETSLTTFMITKDSYCRLKNS--VSDVAYNRYLSLY 3251 Query 3183 NKYKYFSGALDTTSYREAACCHLAKALNDFS-NSGADVLYQPPQTSITSAVLQSGFRKMA 3241 NKY+Y+SG +DT +YREAAC LAKA+ F+ N+G DVLYQPP S++++ LQSG KM Sbjct 3252 NKYRYYSGKMDTAAYREAACSQLAKAMETFNHNNGNDVLYQPPTASVSTSFLQSGIVKMV 3311 Query 3242 FPSGKVEGCMVQVTCGTTTLNGLWLDDTVYCPRHVVCTAEDMLNPNYDDLLIRKSNHSFL 3301 P+ K+E C+V VT G+ TLNGLWLDD VYCPRHV+C + +M P+Y LL R + F Sbjct 3312 SPTSKIEPCIVSVTYGSMTLNGLWLDDKVYCPRHVICLSSNMNEPDYSALLCRVTLGDFT 3371 Query 3302 VQAGNVQLRVIGHSMQNCLLRLKVDTSNPKTPKYKFVRIQPGQTFSVLACYNGSPSGVYQ 3361 + +G + L V+ + MQ C L L V NP TPKY F ++PG+TF+VLA YNG P G + Sbjct 3372 IMSGRMSLTVVSYQMQGCQLVLTVSLQNPYTPKYTFGVVKPGETFTVLAAYNGRPQGAFH 3431 Query 3362 CAMRPNHTIKGSFLNGSCGSVGFNIDYDCVSFCYMHHMELPTGVHAGTDLEGKFYGPFVD 3421 MR ++TIKGSFL GSCGSVG+ + D V F YMH +EL TG H GTD G FYGP+ D Sbjct 3432 VTMRSSYTIKGSFLCGSCGSVGYVLTGDSVKFVYMHQLELSTGCHTGTDFTGNFYGPYRD 3491 Query 3422 RQTAQAAGTDTTITLNVLAWLYAAVINGDRWFLNRFTTTLNDFNLVAMKYNYEPLTQDHV 3481 Q Q D T+NV+AWLYAA++N WF+ ++ DFN+ AM + + D V Sbjct 3492 AQVVQLPVKDYVQTVNVIAWLYAAILNNCAWFVQNDVCSIEDFNVWAMTNGFSQVKADLV 3551 Query 3482 DILGPLSAQTGIAVLDMCAALKELLQNGMNGRTILGSTILEDEFTPFDVVRQCSGVTFQG 3541 L L++ TG+++ + AA+K L G GR ILGS EDE P DV +Q +GV Q Sbjct 3552 --LDALASMTGVSIETLLAAIKRLYM-GFQGRQILGSCTFEDELAPSDVYQQLAGVKLQS 3608 Query 3542 KFKKIVKGTHHWMLL-TFLTSLLILVQSTQWSLFFFVYENAFLPFALGIMAVAACAMLLV 3600 K K+ +K T +W+L+ TFL S I+ +W++F ++ + L ++ + MLLV Sbjct 3609 KTKRFIKETIYWILISTFLFS-CIISAFVKWTIFMYI-NTHMIGVTLCVLCFVSFMMLLV 3666 Query 3601 KHKHAFLCLFLLPSLATVAYFN-MVYMPASWVMRIMTWLELADTSLSGYRLKDCVMYASA 3659 KHKH +L ++++P L T+ Y N +V + WL +++ + + V Y Sbjct 3667 KHKHFYLTMYIIPVLCTLFYVNYLVVYKEGFRGLTYVWLSYFVPAVNFTYVYE-VFYGCI 3725 Query 3660 L-VLLILMTARTVYDDAARRVWTLMNVITLVYKVYYGNSLDQAISMWALVISVTSNYSGV 3718 L V I +T ++ D ++ + ++TL+ Y+G++L++ + ++ T + Sbjct 3726 LCVFAIFITMHSINHDIFSLMFLVGRIVTLISMWYFGSNLEEDVLLFITAFLGTYTW--- 3782 Query 3719 VTTIMFLARA-IVFVCVEYYPLLFITGNTLQCIMLVYCFLGYCCCCYFGLFCLLNRYFRL 3777 TTI+ LA A IV + F ++ I+L Y F+GY CY+G F LLN FR+ Sbjct 3783 -TTILSLAIAKIVANWLSVNIFYFTDVPYIKLILLSYLFIGYILSCYWGFFSLLNSVFRM 3841 Query 3778 TLGVYDYLVSTQEFRYMNSQGLLPPKSSIDAFKLNIKLLGIGGKPCIKVATVQSKMSDVK 3837 +GVY+Y +S QE RYMN+ GL PP++S +A LN+KLLGIGG P I+V+ +QSK++DVK Sbjct 3842 PMGVYNYKISVQELRYMNANGLRPPRNSFEAILLNLKLLGIGGVPVIEVSQIQSKLTDVK 3901 Query 3838 CTSVVLLSVLQQLRVESSSKLWAQCVQLHNDILLAKDTTEAFEKMVSLLSVLLSMQGAVD 3897 C +VVLL+ LQ L V S+S+LW C LHN+IL D + AF+K+ LL VL + AVD Sbjct 3902 CANVVLLNCLQHLHVASNSRLWQYCSILHNEILSTSDLSVAFDKLAQLLIVLFANPAAVD 3961 Query 3898 ------INKLCEEMLDNRATLQAIASEFSSLPSYAAYATAQEAYEQAVSNGD-SEVVLKK 3950 I+++ ++ + + LQA+ SEF ++ S+ Y A++ A ++G ++ +K+ Sbjct 3962 TKCLASIDEVSDDYVQDSTVLQALQSEFVNMASFVEYEVAKKNLADAKNSGSVNQQQIKQ 4021 Query 3951 LKKSLNVAKSEFDHDAAMQRKLEKMADQAMTQMYKQARSEDKRAKVTSAMQTMLFTMLRK 4010 L+K+ N+AKS ++ D A+ RKLE+MAD A+T MYK+AR DK++KV SA+QTMLF+M+RK Sbjct 4022 LEKACNIAKSVYERDKAVARKLERMADLALTNMYKEARINDKKSKVVSALQTMLFSMVRK 4081 Query 4011 LDNDALNNIINNARDGCVPLNIIPLTTAAKLMVVVPDYGTYKNTCDGNTFTYASALWEIQ 4070 LDN ALN+I++NA GCVPLN IP A L +++PD + D YA ++W IQ Sbjct 4082 LDNQALNSILDNAVKGCVPLNAIPALAANTLTIIIPDKQVFDKVVDNVYVAYAGSVWHIQ 4141 Query 4071 QVVDADSKIVQLSEINMDNSPNLAWPLIVTALRANSAVK--LQNNELSPVALRQMSCAAG 4128 V DAD QL++I++D++ WPL++ A R N +QNNEL P L+ +G Sbjct 4142 TVQDADGINKQLTDISVDSN----WPLVIIANRYNEVANAVMQNNELMPHKLKIQVVNSG 4197 Query 4129 TTQTACTDDNALAYYNNAKGGRFVLALLSDHQDLKWARFPKSDGTGTIYTELEPPCRFVT 4188 + + YYNN GR V A+LSD LK+ + K DG + EL+PPC+F Sbjct 4198 SDMNC--NIPTQCYYNNGSSGRIVYAVLSDVDGLKYTKIIKDDGNCVV-LELDPPCKFSI 4254 Query 4189 DTPKGPKVKYLYFIKGLNNLNRGMVLGSLAATVRLQAGNATEVPANSTVLSFCAFAVDPA 4248 KG K+KYLYFIKG N L RG V+G+L++T+RLQAG ATE ANS++LS CAF+VDP Sbjct 4255 QDVKGLKIKYLYFIKGCNTLARGWVVGTLSSTIRLQAGVATEYAANSSILSLCAFSVDPK 4314 Query 4249 KAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPEANMDQESFGGASCCLYCRCHIDHP 4308 K Y DY+ GG PI NCVKMLC H GTG AIT+ PEA ++Q+S+GGAS C+YCR ++HP Sbjct 4315 KTYLDYIQQGGVPIINCVKMLCDHAGTGMAITIKPEATINQDSYGGASVCIYCRARVEHP 4374 Query 4309 NPKGFCDLKGKYVQIPTTCANDPVGFTLRNTVCTVCGMWKGYGCSC 4354 + G C L+GK+VQ+P DP+ + L + VC VCG W+ CSC Sbjct 4375 DVDGLCKLRGKFVQVPLG-IKDPILYVLTHDVCQVCGFWRDGSCSC 4419 Range 2: 1328 to 1484 Score:91.3 bits(225), Expect:2e-16, Method:Compositional matrix adjust., Identities:57/157(36%), Positives:82/157(52%), Gaps:2/157(1%) Query 1005 LKLTDNVAIKCIDIVKEAQSAKPTVIVNAANTHLKHGGGVAGALNKATNGAMQNESDEYI 1064 L +T NV DI+ A+ K VIVN AN H+ HGGGVA A+ A E+ + Sbjct 1328 LCITPNVCFVKGDIINVARLVKADVIVNPANGHMLHGGGVAKAIAVAAGKKFSKETAAMV 1387 Query 1065 RQNGPLTVGGSCLLSGHNLAEKCLHVVGPNL--NAGEDVQLLKRAYENFNSQDVLLAPLL 1122 + G VG + +G L + L++VGP+ + + LL RAY++ N+ D L+ L+ Sbjct 1388 KSKGVCQVGDCYVSTGGKLCKTILNIVGPDARQDGRQSYVLLARAYKHLNNYDCCLSTLI 1447 Query 1123 SAGIFGAKPLQSLKMCVEIVRTQVYLAVNDKSLYDQI 1159 SAGIF SL + +V QV L N+K +D I Sbjct 1448 SAGIFSVPADVSLTYLLGVVDKQVILVSNNKEDFDII 1484 Range 3: 620 to 937 Score:71.6 bits(174), Expect:2e-10, Method:Compositional matrix adjust., Identities:84/352(24%), Positives:146/352(41%), Gaps:45/352(12%) Query 605 LVQQTMQWLSNMLGTAVDKLKPVFTWVEAKLSAGVEFLRDAWEILKFLITGVFDVIKGQI 664 LV + + W + ML D P W+ +L G+ + A LI ++ + Sbjct 620 LVNKMVNWFNTML----DASAPATGWLLYQLLNGLFVVSQANFNFVALIPDYAKILVNKF 675 Query 665 QVATDNIKECVKIFLGVVNKALEMCLDQVTIAGTKLRALNLGEVFIAQSRGLYRQCIRGK 724 + ECV + + L+ V I G K ++ G + G C + Sbjct 676 YTFFKLLLECVTVDVLKDMPVLKTINGLVCIVGNKFYNVSTGLI-----PGFVLPC-NAQ 729 Query 725 EQLQLLMPLKAPKEVTFLEGDAHDTVLTSEEVVLKSGELEALETPIDSF---TSGAVVGT 781 EQ ++ F EG +E V+++ +E +++ + S+ V Sbjct 730 EQ-----------QIYFFEG-------VAESVIVEDDVIENVKSSLSSYEYCQPPKSVEK 771 Query 782 PVCINGLMLLELENKEQYCALSPGLLATNNVFRLKGG--APVKG--VTFGED-TVLEVQG 836 I+ + + + +K P ++ N+ L P G V F E V+E+ Sbjct 772 ICIIDNMYMGKCGDK-----FFPIVMNDKNICLLDQAWRFPCAGRKVNFNEKPVVMEIPS 826 Query 837 YKNVKITFELDVRVDKVLNEKCSVYTVESGTEVTEFACVVAEAVVKTLQPVSD---LLTP 893 VK+ F+LD D +L + CS + VE G V +F VV +A+ L D + Sbjct 827 LMTVKVMFDLDSTFDDILGKVCSEFEVEKGVTVDDFVAVVCDAIENALNSCKDHPVVGYQ 886 Query 894 MGIDLDEWSVATFYLFDDAGEEKLSSRMYCSFYPPDEEEDCEECEDEEETCE 945 + L++ + YLFD+AG+E ++SRMYC+F ++ ED E E+T + Sbjct 887 VRAFLNKLNENVVYLFDEAGDEAMASRMYCTF-AIEDVEDVISSEAVEDTID 937 >RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Host translation inhibitor nsp1; Short=nsp1; AltName: Full=p28; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p65; Contains: RecName: Full=Papain-like proteinase nsp3; Short=PL-PRO; AltName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=p210; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; AltName: Full=Peptide HD2; AltName: Full=p44; Contains: RecName: Full=3C-like proteinase nsp5; Short=3CL-PRO; Short=3CLp; AltName: Full=M-PRO; AltName: Full=nsp5; AltName: Full=p27; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; AltName: Full=p10; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; AltName: Full=p22; Contains: RecName: Full=Viral protein genome-linked nsp9; AltName: Full=Non-structural protein 9; Short=nsp9; AltName: Full=RNA-capping enzyme subunit nsp9; AltName: Full=p12; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; AltName: Full=p15; Contains: RecName: Full=RNA-directed RNA polymerase nsp12; Short=Pol; Short=RdRp; AltName: Full=nsp12; AltName: Full=p100; Contains: RecName: Full=Helicase nsp13; Short=Hel; AltName: Full=nsp13; AltName: Full=p67; Contains: RecName: Full=Guanine-N7 methyltransferase nsp14; Short=ExoN; AltName: Full=nsp14; Contains: RecName: Full=Uridylate-specific endoribonuclease nsp15; AltName: Full=NendoU; AltName: Full=nsp15; AltName: Full=p35; Contains: RecName: Full=2'-O-methyltransferase nsp16; AltName: Full=nsp16 [Human coronavirus HKU1 (isolate N5)] Sequence ID: P0C6X4.1 Length: 7132 Range 1: 1600 to 4399 Score:1813 bits(4695), Expect:0.0, Method:Compositional matrix adjust., Identities:1068/2871(37%), Positives:1575/2871(54%), Gaps:124/2871(4%) Query 1537 KTIKVFTTVDNTNLHTHIVDMSMTYGQQFGPTYLDGADVTKIKPHVNHEGKTFFVLPSDD 1596 K I V TVD N + + + +G+ G + DG DVTK+K + K + + Sbjct 1600 KKIDVLLTVDGVNFKSISLTVGEVFGKILGNVFCDGIDVTKLKCSDFYADKILYQYENLS 1659 Query 1597 TLRSEAFEYYHTIDESFLGRYMSALNHTKKWKFPQVGGLTSIKWADNNCYLSSVLLALQQ 1656 A + D+ L Y + L KW G S + + NNCY++ L LQ Sbjct 1660 LADISAVQSSFGFDQQQLLAYYNFLT-VCKWSVVVNGPFFSFEQSHNNCYVNVACLMLQH 1718 Query 1657 VEVKFNAPALQEAYYRARAGDAANFCALILAYSNKTVGELGDVRETMTHLLQHANLESAK 1716 + +KFN QEA+Y RAG AL+LA + E D + + +L+ A+L A Sbjct 1719 INLKFNKWQWQEAWYEFRAGRPHRLVALVLAKGHFKFDEPSDATDFIRVVLKQADLSGAI 1778 Query 1717 RVLNVVCKHCGQKTTTLKGVEAVMYMGTLSYDELKTGVSIPCVC-GRNATQYLVQQESSF 1775 L ++C CG K + GV+AVM+ GTL+ +L G I C C GR + + F Sbjct 1779 CELELICD-CGIKQESRVGVDAVMHFGTLAKTDLFNGYKIGCNCAGR--IVHCTKLNVPF 1835 Query 1776 VMMSAPPAEYKLQQGAFLCANEYTGNYQCGHYTHITAKETLYRVDGAHLTKMSEYKGPVT 1835 ++ S P L + AN + G GHYTH+ D + K + G +T Sbjct 1836 LICSNTPLSKDLPDDV-VAANMFMG-VGVGHYTHLKCGSPYQHYDACSVKKYTGVSGCLT 1893 Query 1836 DVFY-KETSYTTAIKPVSYKLDGVTYTEIEPKLDGYYKKGNAYYTEQPIDLVPTQPMPNA 1894 D Y K + T +Y LD V P L YY YYT +PI + Q P A Sbjct 1894 DCLYLKNLTQTFTSMLTNYFLDDVEMVAYNPDLSQYYCDNGKYYT-KPI--IKAQFKPFA 1950 Query 1895 SFD----NFKLTCSNTKFADDLNQMTGFKKPAS-RELTVTFFPDLNGDVVAIDYRHYSTS 1949 D NFKL + LN GF E VT +P GDVV Y Sbjct 1951 KVDGVYTNFKLVGHD--ICAQLNDKLGFNVDLPFVEYKVTVWPVATGDVVLASDDLYVKR 2008 Query 1950 FKKGAKLVHKPILW--HINQTTNKTTYKPNIWCLRCLWSTKPVDTSNSFEVLVVEDTQGM 2007 + KG + KP++W H + N TY ++ + N + VL V Sbjct 2009 YFKGCETFGKPVIWFCHDEASLNSLTY----------FNKPSFKSENRYSVLSV------ 2052 Query 2008 DNLACESQTTTSEEVVENPTVQKEI-IECDVKTTEVVGNVILKPSEEGVKVTQELGHEDL 2066 D+++ ESQ V+E+ KE+ ++ KT ++ +I+ +KV + L D+ Sbjct 2053 DSVSEESQGNVVTSVMESQISTKEVKLKGVRKTVKIEDAIIVNDENSSIKVVKSLSLVDV 2112 Query 2067 MAAYVEETSITIKKPNELSLALGLKTLATHGAAAINSVPWSKILAYVKPFLGQTAVITSN 2126 Y+ + NELS + T+ + I + L ++ QT ++ Sbjct 2113 WDMYLTGCDYVVWVANELSRLVKSPTVREYIRYGIKPITIPIDLLCLRD-DNQTLLVPK- 2170 Query 2127 CIKKCVQRVFSNYMPYVITLLFQLCTFTKSTNSRIKASLPTTIAKNSVKSVAKLCLDVCI 2186 I K F ++ ++ +F L FT T IA ++ L L Sbjct 2171 -IFKARAIEFYGFLKWLFIYVFSLLHFTNDKT----IFYTTEIASKFTFNLFCLALKNAF 2225 Query 2187 NYVKSPKFSKLFTIV-----MWL--LLLSICLGSL---------TYVTAVLGVCLSSLGV 2230 + F K F +V W L +++ +V ++ ++ G+ Sbjct 2226 QTFRWSIFIKGFLVVATVFLFWFNFLYINVIFSDFYLPNISVFPIFVGRIVMWIKATFGL 2285 Query 2231 PSYCDGVRELYINSSNVTTMDFCQGYFPCSVCLSGLDSLDSYPALETIQVTISSYKL--D 2288 + CD +L + T FC G F C +C SG D LD+Y A++ +Q + L Sbjct 2286 VTICDFYSKLGVG----FTSHFCNGSFICELCHSGFDMLDTYAAIDFVQYEVDRRVLFDY 2341 Query 2289 LTFLGLAAEWLLAYMLFTKFFYLLGLSAIMQAFFGYFASHFI--SNSWLMWFIISIVQMA 2346 ++ + L E ++ Y L+T +FY L +Q F + F+ + WL+ FI+ + M Sbjct 2342 VSLVKLIVELVIGYSLYTVWFYPLFCLIGLQLFTTWLPDLFMLETMHWLIRFIVFVANML 2401 Query 2347 PVSAMVRMYIFFASFYYVWKSYVHIMDGCTSSTCMMCYKRNRATRVECTTIVNGVKRSFY 2406 P ++R YI + Y V HI+ GC + C+ CYKRN + RV+C+TIV GV R + Sbjct 2402 PAFVLLRFYIVVTAMYKVVGFIRHIVYGCNKAGCLFCYKRNCSVRVKCSTIVGGVIRYYD 2461 Query 2407 VYANGGRGFCKAHNWNCLNCDTFCAGSTFISDEVARDLSLQFKRPINPTDQSAYVVDSVT 2466 + ANGG GFC H WNC NC +F G+TFI+ E A +LS + KRP+NPTD S YVV + Sbjct 2462 ITANGGTGFCVKHQWNCFNCHSFKPGNTFITVEAAIELSKELKRPVNPTDASHYVVTDIK 2521 Query 2467 VKNGALHLYFDKAGQKTYERHPLSHFVNLDNLRANNTKGSLPINVIVFDGKSKCEESAAK 2526 + L++D+ GQ+ Y+ S FV+++NL + K + V+V +S + + Sbjct 2522 QVGCMMRLFYDRDGQRVYDDVDASLFVDINNLLHSKVKVVPNLYVVV--VESDADRANFL 2579 Query 2527 SASVYYSQLMCQPILLLDQALVSDVGDSTEVSVKMFDAYVDTFSATFSVPMEKLKALVAT 2586 +A V+Y+Q + +PILL+D+ L++ + V+ MFD YVDTF + F V + V Sbjct 2580 NAVVFYAQSLYRPILLVDKKLITTACNGISVTQIMFDVYVDTFMSHFDVDRKSFNNFVNI 2639 Query 2587 AHSELAKGVALDGVLSTFVSAARQGV-VDTDVDTKDVIECLKLSHHSDIEVTGDSCNNFM 2645 AH+ L +GV L+ VL TFV R+ +D+DV+T+ + + + + + +E T ++ NN + Sbjct 2640 AHASLREGVQLEKVLDTFVGCVRKCCSIDSDVETRFITKSMISAVAAGLEFTDENYNNLV 2699 Query 2646 LTYNKVENMTPRDLGACIDCNARHINAQVAKSHNVSLVWNVKDYMSLSEQLRKQIRSAAK 2705 TY K +N+ DLG I A+H+ VAK N+S +W + + L+ L+ +++ A Sbjct 2700 PTYLKSDNIVAADLGVLIQNGAKHVQGNVAKVANISCIWFIDAFNQLTADLQHKLKKACV 2759 Query 2706 KNNIPFRLTCATTRQVVNVITTKISLKGGKVVSTWFKLLLKVTLLCVLAALFCYVIMPVH 2765 K + +LT V ++TT SLKGG V+S +L ++L+C + + ++P + Sbjct 2760 KTGLKLKLTFNKQEASVPILTTPFSLKGGVVLSNLLYILFFISLICFI---LLWALLPTY 2816 Query 2766 SLSVHDGYTNEIIGYKAIQDGVTRDIVSTDDCFANKHAGFDSWFSQRGGS--YRNDKNCP 2823 S+ D + +K I +GV RDI D CFANK FD W+ GS Y N +CP Sbjct 2817 SVYKSDIHLPAYASFKVIDNGVVRDISVNDLCFANKFFQFDQWYESTFGSVYYHNSMDCP 2876 Query 2824 VVAAIITREIGFIVPGLPGTVLRALNGDFLHFLPRVFSAVGNICYTPSKLIEYSDFATSA 2883 +V A++ +IG + +P VLR LHFL F++ CYTP I Y+DF S Sbjct 2877 IVVAVMDEDIGSTMFNVPTKVLR-YGFHVLHFLTYAFASDSVQCYTPHIQISYNDFYASG 2935 Query 2884 CVLAAECTIFKDAMGKPVPYCYDTNLLEGSISYSELRPDTRYVLMDGS-IIQFPNTYLEG 2942 CVL++ CT+FK G P PYCY +++ + Y+ L P TRY L + + I+FP+ EG Sbjct 2936 CVLSSLCTMFKRGDGTPHPYCYTDGVMKNASLYTSLVPHTRYSLANSNGFIRFPDVISEG 2995 Query 2943 SVRVVTTFDAEYCRHGTCERSEVGVCLSTSGRWVLNNEHYRALPGVFCGVDAMNLIANIF 3002 VR+V T YCR G CE +E G+C + + WVLNN++YR++PG FCG D +L F Sbjct 2996 IVRIVRTRSMTYCRVGACEYAEEGICFNFNSSWVLNNDYYRSMPGTFCGRDFFDLFYQFF 3055 Query 3003 TPLVQPVGALDVSASVVAGGIIAILVTCAAYYFMKFRRAFGEYNHVVAANALLFLMSFTI 3062 + L++P+ ++AS + G I+AI+V YY +K +RAFG+Y VV N +++ ++F + Sbjct 3056 SSLIRPIDFFSLTASSIFGAILAIVVVLVFYYLIKLKRAFGDYTSVVVINVIVWCINFLM 3115 Query 3063 LCLAPAYSFLPGVYSIFYLYLTFYFTNDVSFLAHLQWFAMFSPIVPFWITAIYVFCISLK 3122 L + Y VY+ FY Y+T YF +++S + HLQW M+ I+PFW YV + Sbjct 3116 LFVFQVYPICACVYACFYFYVTLYFPSEISVIMHLQWIVMYGAIMPFWFCVTYVAMVIAN 3175 Query 3123 HFHWFFSNYLKKRVMFNGVTFSTFEEAALCTFLLNKEMYLRLRSETLLPLTQYNRYLALY 3182 H W FS Y +K + N + STFEE +L TF++ K+ Y RL++ + YNRYL+LY Sbjct 3176 HVLWLFS-YCRK-IGVNVCSDSTFEETSLTTFMITKDSYCRLKNS--VSDVAYNRYLSLY 3231 Query 3183 NKYKYFSGALDTTSYREAACCHLAKALNDFS-NSGADVLYQPPQTSITSAVLQSGFRKMA 3241 NKY+Y+SG +DT +YREAAC LAKA+ F+ N+G DVLYQPP S++++ LQSG KM Sbjct 3232 NKYRYYSGKMDTAAYREAACSQLAKAMETFNHNNGNDVLYQPPTASVSTSFLQSGIVKMV 3291 Query 3242 FPSGKVEGCMVQVTCGTTTLNGLWLDDTVYCPRHVVCTAEDMLNPNYDDLLIRKSNHSFL 3301 P+ K+E C+V VT G+ TLNGLWLDD VYCPRHV+C + +M P+Y LL R + F Sbjct 3292 SPTSKIEPCLVSVTYGSMTLNGLWLDDKVYCPRHVICLSSNMNEPDYSALLCRVTLGDFT 3351 Query 3302 VQAGNVQLRVIGHSMQNCLLRLKVDTSNPKTPKYKFVRIQPGQTFSVLACYNGSPSGVYQ 3361 + +G + L V+ + MQ C L L V NP TPKY F ++PG+TF+VLA YNG P G + Sbjct 3352 IMSGRMSLTVVSYQMQGCQLVLTVSLQNPYTPKYTFGVVKPGETFTVLAAYNGRPQGAFH 3411 Query 3362 CAMRPNHTIKGSFLNGSCGSVGFNIDYDCVSFCYMHHMELPTGVHAGTDLEGKFYGPFVD 3421 MR ++TIKGSFL GSCGSVG+ + D V F YMH +EL TG H GTD G FYGP+ D Sbjct 3412 VTMRSSYTIKGSFLCGSCGSVGYVLTGDSVKFVYMHQLELSTGCHTGTDFNGNFYGPYRD 3471 Query 3422 RQTAQAAGTDTTITLNVLAWLYAAVINGDRWFLNRFTTTLNDFNLVAMKYNYEPLTQDHV 3481 Q Q D T+NV+AWLYAA++N WF+ ++ DFN+ AM + + D V Sbjct 3472 AQVVQLPVKDYVQTVNVIAWLYAAILNNCAWFVQNDVCSIEDFNVWAMTNGFSQVKADLV 3531 Query 3482 DILGPLSAQTGIAVLDMCAALKELLQNGMNGRTILGSTILEDEFTPFDVVRQCSGVTFQG 3541 L L++ TG+++ + AA+K L G GR ILGS EDE P DV +Q +GV Q Sbjct 3532 --LDALASMTGVSIETLLAAIKRLYM-GFQGRQILGSCTFEDELAPSDVYQQLAGVKLQS 3588 Query 3542 KFKKIVKGTHHWMLL-TFLTSLLILVQSTQWSLFFFVYENAFLPFALGIMAVAACAMLLV 3600 K K+ +K T +W+L+ TFL S I+ +W++F ++ + L ++ + MLLV Sbjct 3589 KTKRFIKETIYWILISTFLFS-CIISAFVKWTIFMYI-NTHMIGVTLCVLCFVSFMMLLV 3646 Query 3601 KHKHAFLCLFLLPSLATVAYFN-MVYMPASWVMRIMTWLELADTSLSGYRLKDCVMYASA 3659 KHKH +L ++++P L T+ Y N +V + WL +++ + + V Y Sbjct 3647 KHKHFYLTMYIIPVLCTLFYVNYLVVYKEGFRGFTYVWLSHFVPAVNFTYVYE-VFYGCI 3705 Query 3660 L-VLLILMTARTVYDDAARRVWTLMNVITLVYKVYYGNSLDQAISMWALVISVTSNYSGV 3718 L V I +T ++ D ++ + ++TL+ Y+G++L++ + ++ T + Sbjct 3706 LCVFAIFITMHSINHDIFSLMFLVGRIVTLISMWYFGSNLEEDVLLFITAFLGTYTW--- 3762 Query 3719 VTTIMFLARA-IVFVCVEYYPLLFITGNTLQCIMLVYCFLGYCCCCYFGLFCLLNRYFRL 3777 TTI+ LA A IV + F ++ I+L Y F+GY CY+G F LLN FR+ Sbjct 3763 -TTILSLAIAKIVANWLSVNIFYFTDVPYIKLILLSYLFIGYILSCYWGFFSLLNSVFRM 3821 Query 3778 TLGVYDYLVSTQEFRYMNSQGLLPPKSSIDAFKLNIKLLGIGGKPCIKVATVQSKMSDVK 3837 +GVY+Y +S QE RYMN+ GL PP++S +A LN+KLLGIGG P I+V+ +QSK++DVK Sbjct 3822 PMGVYNYKISVQELRYMNANGLRPPRNSFEAILLNLKLLGIGGVPVIEVSQIQSKLTDVK 3881 Query 3838 CTSVVLLSVLQQLRVESSSKLWAQCVQLHNDILLAKDTTEAFEKMVSLLSVLLSMQGAVD 3897 C +VVLL+ LQ L V S+SKLW C LHN+IL D + AF+K+ LL VL S AVD Sbjct 3882 CANVVLLNCLQHLHVASNSKLWQYCSVLHNEILSTSDLSVAFDKLAQLLIVLFSNPAAVD 3941 Query 3898 ------INKLCEEMLDNRATLQAIASEFSSLPSYAAYATAQEAYEQAVSNGD-SEVVLKK 3950 I+++ ++ + + LQA+ SEF ++ S+ Y A++ A ++G ++ +K+ Sbjct 3942 TKCLASIDEVSDDYVQDSTVLQALQSEFVNMASFVEYEVAKKNLADAKNSGSVNQQQIKQ 4001 Query 3951 LKKSLNVAKSEFDHDAAMQRKLEKMADQAMTQMYKQARSEDKRAKVTSAMQTMLFTMLRK 4010 L+K+ N+AKS ++ D A+ RKLE+MAD A+T MYK+AR DK++KV SA+QTMLF+M+RK Sbjct 4002 LEKACNIAKSVYERDKAVARKLERMADLALTNMYKEARINDKKSKVVSALQTMLFSMVRK 4061 Query 4011 LDNDALNNIINNARDGCVPLNIIPLTTAAKLMVVVPDYGTYKNTCDGNTFTYASALWEIQ 4070 LDN ALN+I++NA GCVPL+ IP A L +++PD + D TYA ++W IQ Sbjct 4062 LDNQALNSILDNAVKGCVPLSAIPALAANTLTIIIPDKQVFDKVVDNVYVTYAGSVWHIQ 4121 Query 4071 QVVDADSKIVQLSEINMDNSPNLAWPLIVTALRANSAVK--LQNNELSPVALRQMSCAAG 4128 V DAD QL++I++D++ WPL++ A R N +QNNEL P L+ +G Sbjct 4122 TVQDADGINKQLTDISVDSN----WPLVIIANRYNEVANAVMQNNELMPHKLKIQVVNSG 4177 Query 4129 T-----TQTACTDDNALAYYNNAKGGRFVLALLSDHQDLKWARFPKSDGTGTIYTELEPP 4183 + T C YYNN GR V A+LSD LK+ + K DG + EL+PP Sbjct 4178 SDINCNIPTQC-------YYNNVSSGRIVYAVLSDVDGLKYTKIMKDDGNCVV-LELDPP 4229 Query 4184 CRFVTDTPKGPKVKYLYFIKGLNNLNRGMVLGSLAATVRLQAGNATEVPANSTVLSFCAF 4243 C+F KG K+KYLYFIKG N L RG V+G+L++T+RLQAG ATE ANS++LS CAF Sbjct 4230 CKFSIQDVKGLKIKYLYFIKGCNTLARGWVVGTLSSTIRLQAGVATEYAANSSILSLCAF 4289 Query 4244 AVDPAKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPEANMDQESFGGASCCLYCRC 4303 +VDP K Y DY+ GG PI NCVKMLC H GTG AIT+ PEA ++Q+S+GGAS C+YCR Sbjct 4290 SVDPKKTYLDYIQQGGVPIINCVKMLCDHAGTGMAITIKPEATINQDSYGGASVCIYCRA 4349 Query 4304 HIDHPNPKGFCDLKGKYVQIPTTCANDPVGFTLRNTVCTVCGMWKGYGCSC 4354 ++HP+ G C L+GK+VQ+P DP+ + L + VC VCG W+ CSC Sbjct 4350 RVEHPDVDGICKLRGKFVQVPLG-IKDPILYVLTHDVCQVCGFWRDGSCSC 4399 Range 2: 1308 to 1464 Score:91.3 bits(225), Expect:2e-16, Method:Compositional matrix adjust., Identities:57/157(36%), Positives:82/157(52%), Gaps:2/157(1%) Query 1005 LKLTDNVAIKCIDIVKEAQSAKPTVIVNAANTHLKHGGGVAGALNKATNGAMQNESDEYI 1064 L +T NV DI+ A+ K VIVN AN H+ HGGGVA A+ A E+ + Sbjct 1308 LCITPNVCFVKGDIINVARLVKADVIVNPANGHMLHGGGVAKAIAVAAGKKFSKETAAMV 1367 Query 1065 RQNGPLTVGGSCLLSGHNLAEKCLHVVGPNL--NAGEDVQLLKRAYENFNSQDVLLAPLL 1122 + G VG + +G L + L++VGP+ + + LL RAY++ N+ D L+ L+ Sbjct 1368 KSKGVCQVGDCYVSTGGKLCKTILNIVGPDARQDGRQSYVLLARAYKHLNNYDCCLSTLI 1427 Query 1123 SAGIFGAKPLQSLKMCVEIVRTQVYLAVNDKSLYDQI 1159 SAGIF SL + +V QV L N+K +D I Sbjct 1428 SAGIFSVPADVSLTYLLGVVDKQVILVSNNKEDFDII 1464 Range 3: 594 to 937 Score:69.7 bits(169), Expect:7e-10, Method:Compositional matrix adjust., Identities:92/388(24%), Positives:159/388(40%), Gaps:65/388(16%) Query 579 RLVDAMVYTSDLLTNSVVVMAYVTGGLVQQTMQWLSNMLGTAVDKLKPVFTWVEAKLSAG 638 R+ A Y + V + LV + + W + ML D P W Sbjct 594 RVSVATFYIEHYVNRLVTQFKLLGTTLVNKMVNWFNTML----DASAPATGW-------- 641 Query 639 VEFLRDAWEILKFLITGVFDVIKGQIQVATDNIKECVKIFLGVVNKALEMCLDQVTIAGT 698 +L L+ G F V + + I + KI + ++ L+ VT+ Sbjct 642 ---------LLYQLLNGFFVVSQANLNFVA-LIPDYAKILVNKFYTFFKLLLECVTVDVL 691 Query 699 K----LRALN-----LGEVFIAQSRGLYRQCIRGKEQLQLLMPLKA-PKEVTFLEGDAHD 748 K L+ +N +G F S GL I G ++P A +++ F EG Sbjct 692 KDMPVLKTINGLVCIVGNKFYNVSTGL----IPG-----FVLPCNAQEQQIYFFEG---- 738 Query 749 TVLTSEEVVLKSGELEALETPIDSF---TSGAVVGTPVCINGLMLLELENKEQYCALSPG 805 +E V+++ +E +++ + S+ V I+ + + + +K P Sbjct 739 ---VAESVIVEDDVIENVKSSLSSYEYCQPPKSVEKICIIDNMYMGKCGDK-----FFPI 790 Query 806 LLATNNVFRLKGG--APVKG--VTFGED-TVLEVQGYKNVKITFELDVRVDKVLNEKCSV 860 ++ N+ L P G V F E V+E+ VK+ F+LD D +L + CS Sbjct 791 VMNDKNICLLDHAWRFPCAGRKVNFNEKPVVMEIPSLMTVKVMFDLDSTFDDILGKVCSE 850 Query 861 YTVESGTEVTEFACVVAEAVVKTLQPVSD---LLTPMGIDLDEWSVATFYLFDDAGEEKL 917 + VE G V +F VV +A+ L + + + L++ + YLFD+AG+E + Sbjct 851 FEVEKGVTVDDFVAVVCDAIENALNSCKEHPVVGYQVRAFLNKLNENVVYLFDEAGDEAM 910 Query 918 SSRMYCSFYPPDEEEDCEECEDEEETCE 945 +SRMYC+F ++ ED E E+T + Sbjct 911 ASRMYCTF-AIEDVEDVISSEAVEDTID 937 >RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Host translation inhibitor nsp1; Short=nsp1; AltName: Full=p28; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p65; Contains: RecName: Full=Papain-like proteinase nsp3; Short=PL-PRO; AltName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=p210; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; AltName: Full=Peptide HD2; AltName: Full=p44; Contains: RecName: Full=3C-like proteinase nsp5; Short=3CL-PRO; Short=3CLp; AltName: Full=M-PRO; AltName: Full=nsp5; AltName: Full=p27; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; AltName: Full=p10; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; AltName: Full=p22; Contains: RecName: Full=Viral protein genome-linked nsp9; AltName: Full=Non-structural protein 9; Short=nsp9; AltName: Full=RNA-capping enzyme subunit nsp9; AltName: Full=p12; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; AltName: Full=p15; Contains: RecName: Full=RNA-directed RNA polymerase nsp12; Short=Pol; Short=RdRp; AltName: Full=nsp12; AltName: Full=p100; Contains: RecName: Full=Helicase nsp13; Short=Hel; AltName: Full=nsp13; AltName: Full=p67; Contains: RecName: Full=Guanine-N7 methyltransferase nsp14; Short=ExoN; AltName: Full=nsp14; Contains: RecName: Full=Uridylate-specific endoribonuclease nsp15; AltName: Full=NendoU; AltName: Full=nsp15; AltName: Full=p35; Contains: RecName: Full=2'-O-methyltransferase nsp16; AltName: Full=nsp16 [Human coronavirus HKU1 (isolate N1)] Sequence ID: P0C6X2.1 Length: 7182 Range 1: 1650 to 4449 Score:1806 bits(4679), Expect:0.0, Method:Compositional matrix adjust., Identities:1067/2866(37%), Positives:1575/2866(54%), Gaps:114/2866(3%) Query 1537 KTIKVFTTVDNTNLHTHIVDMSMTYGQQFGPTYLDGADVTKIKPHVNHEGKTFFVLPSDD 1596 K I V TVD N + + + +G+ G + DG DVTK+K + K + + Sbjct 1650 KKIDVLLTVDGVNFKSISLTVGEVFGKILGNVFCDGIDVTKLKCSDFYADKILYQYENLS 1709 Query 1597 TLRSEAFEYYHTIDESFLGRYMSALNHTKKWKFPQVGGLTSIKWADNNCYLSSVLLALQQ 1656 A + D+ L Y + L KW G S + + NNCY++ L LQ Sbjct 1710 LADISAVQSSFGFDQQQLLAYYNFLT-VCKWSVVVNGPFFSFEQSHNNCYVNVACLMLQH 1768 Query 1657 VEVKFNAPALQEAYYRARAGDAANFCALILAYSNKTVGELGDVRETMTHLLQHANLESAK 1716 + +KFN QEA+Y RAG AL+LA + E D + + +L+ A+L A Sbjct 1769 INLKFNKWQWQEAWYEFRAGRPHRLVALVLAKGHFKFDEPSDATDFIRVVLKQADLSGAI 1828 Query 1717 RVLNVVCKHCGQKTTTLKGVEAVMYMGTLSYDELKTGVSIPCVC-GRNATQYLVQQESSF 1775 L ++C CG K + GV+AVM+ GTL+ +L G I C C GR + + F Sbjct 1829 CELELICD-CGIKQESRVGVDAVMHFGTLAKTDLFNGYKIGCNCAGR--IVHCTKLNVPF 1885 Query 1776 VMMSAPPAEYKLQQGAFLCANEYTGNYQCGHYTHITAKETLYRVDGAHLTKMSEYKGPVT 1835 ++ S P L + AN + G GHYTH+ D + K + G +T Sbjct 1886 LICSNTPLSKDLPDDV-VAANMFMG-VGVGHYTHLKCGSPYQHYDACSVKKYTGVSGCLT 1943 Query 1836 DVFY-KETSYTTAIKPVSYKLDGVTYTEIEPKLDGYYKKGNAYYTEQPIDLVPTQPMPNA 1894 D Y K + T +Y LD V P L YY YYT +PI + Q P A Sbjct 1944 DCLYLKNLTQTFTSMLTNYFLDDVEMVAYNPDLSQYYCDNGKYYT-KPI--IKAQFKPFA 2000 Query 1895 SFD----NFKLTCSNTKFADDLNQMTGFKKPAS-RELTVTFFPDLNGDVVAIDYRHYSTS 1949 D NFKL + LN GF E VT +P GDVV Y Sbjct 2001 KVDGVYTNFKLVGHD--ICAQLNDKLGFNVDLPFVEYKVTVWPVATGDVVLASDDLYVKR 2058 Query 1950 FKKGAKLVHKPILW--HINQTTNKTTYKPNIWCLRCLWSTKPVDTSNSFEVLVVEDTQGM 2007 + KG + KP++W H + N TY ++ + N + VL V Sbjct 2059 YFKGCETFGKPVIWFCHDEASLNSLTY----------FNKPSFKSENRYSVLSV------ 2102 Query 2008 DNLACESQTTTSEEVVENPTVQKEI-IECDVKTTEVVGNVILKPSEEGVKVTQELGHEDL 2066 D+++ ESQ V+E+ KE+ ++ KT ++ +I+ +KV + L D+ Sbjct 2103 DSVSEESQGNVVTSVMESQISTKEVKLKGVRKTVKIEDAIIVNDENSSIKVVKSLSLVDV 2162 Query 2067 MAAYVEETSITIKKPNELSLALGLKTLATHGAAAINSVPWSKILAYVKPFLGQTAVITSN 2126 Y+ + NELS + T+ + I + L ++ QT ++ Sbjct 2163 WDMYLTGCDYVVWVANELSRLVKSPTVREYIRYGIKPITIPIDLLCLRD-DNQTLLVPK- 2220 Query 2127 CIKKCVQRVFSNYMPYVITLLFQLCTFTKSTNSRIKASLPTTIAKNSVKSVAKLCLDVCI 2186 I K F ++ ++ +F L FT T IA ++ L L Sbjct 2221 -IFKARAIEFYGFLKWLFIYVFSLLHFTNDKT----IFYTTEIASKFTFNLFCLALKNAF 2275 Query 2187 NYVKSPKFSKLFTIV-----MWL--LLLSICLGSL---------TYVTAVLGVCLSSLGV 2230 + F K F +V W L +++ +V ++ ++ G+ Sbjct 2276 QTFRWSIFIKGFLVVATVFLFWFNFLYINVIFSDFYLPNISVFPIFVGRIVMWIKATFGL 2335 Query 2231 PSYCDGVRELYINSSNVTTMDFCQGYFPCSVCLSGLDSLDSYPALETIQVTISSYKL--D 2288 + CD +L + T FC G F C +C SG D LD+Y A++ +Q + L Sbjct 2336 VTICDFYSKLGVG----FTSHFCNGSFICELCHSGFDMLDTYAAIDFVQYEVDRRVLFDY 2391 Query 2289 LTFLGLAAEWLLAYMLFTKFFYLLGLSAIMQAFFGYFASHFISNS--WLMWFIISIVQMA 2346 ++ + L E ++ Y L+T +FY L +Q F + F+ + WL+ FI+ + M Sbjct 2392 VSLVKLIVELVIGYSLYTVWFYPLFCLIGLQLFTTWLPDLFMLETMHWLIRFIVFVANML 2451 Query 2347 PVSAMVRMYIFFASFYYVWKSYVHIMDGCTSSTCMMCYKRNRATRVECTTIVNGVKRSFY 2406 P ++R YI + Y V HI+ GC + C+ CYKRN + RV+C+TIV GV R + Sbjct 2452 PAFVLLRFYIVVTAMYKVVGFIRHIVYGCNKAGCLFCYKRNCSVRVKCSTIVGGVIRYYD 2511 Query 2407 VYANGGRGFCKAHNWNCLNCDTFCAGSTFISDEVARDLSLQFKRPINPTDQSAYVVDSVT 2466 + ANGG GFC H WNC NC +F G+TFI+ E A +LS + KRP+NPTD S YVV + Sbjct 2512 ITANGGTGFCVKHQWNCFNCHSFKPGNTFITVEAAIELSKELKRPVNPTDASHYVVTDIK 2571 Query 2467 VKNGALHLYFDKAGQKTYERHPLSHFVNLDNLRANNTKGSLPINVIVFDGKSKCEESAAK 2526 + L++D+ GQ+ Y+ S FV+++NL + K + V+V +S + + Sbjct 2572 QVGCMMRLFYDRDGQRVYDDVDASLFVDINNLLHSKVKVVPNLYVVV--VESDADRANFL 2629 Query 2527 SASVYYSQLMCQPILLLDQALVSDVGDSTEVSVKMFDAYVDTFSATFSVPMEKLKALVAT 2586 +A V+Y+Q + +PILL+D+ L++ + V+ MFD YVDTF + F V + V Sbjct 2630 NAVVFYAQSLYRPILLVDKKLITTACNGISVTQTMFDVYVDTFMSHFDVDRKSFNNFVNI 2689 Query 2587 AHSELAKGVALDGVLSTFVSAARQGV-VDTDVDTKDVIECLKLSHHSDIEVTGDSCNNFM 2645 AH+ L +GV L+ VL TFV R+ +D+DV+T+ + + + + + +E T ++ NN + Sbjct 2690 AHASLREGVQLEKVLDTFVGCVRKCCSIDSDVETRFITKSMISAVAAGLEFTDENYNNLV 2749 Query 2646 LTYNKVENMTPRDLGACIDCNARHINAQVAKSHNVSLVWNVKDYMSLSEQLRKQIRSAAK 2705 TY K +N+ DLG I A+H+ VAK+ N+S +W + + L+ L+ +++ A Sbjct 2750 PTYLKSDNIVAADLGVLIQNGAKHVQGNVAKAANISCIWFIDAFNQLTADLQHKLKKACV 2809 Query 2706 KNNIPFRLTCATTRQVVNVITTKISLKGGKVVSTWFKLLLKVTLLCVLAALFCYVIMPVH 2765 K + +LT V ++TT SLKGG V+S +L V+L+C + + ++P + Sbjct 2810 KTGLKLKLTFNKQEASVPILTTPFSLKGGVVLSNLLYILFFVSLICFI---LLWALLPTY 2866 Query 2766 SLSVHDGYTNEIIGYKAIQDGVTRDIVSTDDCFANKHAGFDSWFSQRGGS--YRNDKNCP 2823 S+ D + +K I +GV RDI D CFANK FD W+ GS Y N +CP Sbjct 2867 SVYKSDIHLPAYASFKVIDNGVVRDISVNDLCFANKFFQFDQWYESTFGSVYYHNSMDCP 2926 Query 2824 VVAAIITREIGFIVPGLPGTVLRALNGDFLHFLPRVFSAVGNICYTPSKLIEYSDFATSA 2883 +V A++ +IG + +P VLR LHFL F++ CYTP I Y+DF S Sbjct 2927 IVVAVMDEDIGSTMFNVPTKVLRH-GFHVLHFLTYAFASDSVQCYTPHIQISYNDFYASG 2985 Query 2884 CVLAAECTIFKDAMGKPVPYCYDTNLLEGSISYSELRPDTRYVLMDGS-IIQFPNTYLEG 2942 CVL++ CT+FK G P PYCY +++ + Y+ L P TRY L + + I+FP+ EG Sbjct 2986 CVLSSLCTMFKRGDGTPHPYCYSDGVMKNASLYTSLVPHTRYSLANSNGFIRFPDVISEG 3045 Query 2943 SVRVVTTFDAEYCRHGTCERSEVGVCLSTSGRWVLNNEHYRALPGVFCGVDAMNLIANIF 3002 VR+V T YCR G CE +E G+C + + WVLNN++YR++PG FCG D +L F Sbjct 3046 IVRIVRTRSMTYCRVGACEYAEEGICFNFNSSWVLNNDYYRSMPGTFCGRDLFDLFYQFF 3105 Query 3003 TPLVQPVGALDVSASVVAGGIIAILVTCAAYYFMKFRRAFGEYNHVVAANALLFLMSFTI 3062 + L++P+ ++AS + G I+AI+V YY +K +RAFG+Y VV N +++ ++F + Sbjct 3106 SSLIRPIDFFSLTASSIFGAILAIVVVLVFYYLIKLKRAFGDYTSVVVINVVVWCINFLM 3165 Query 3063 LCLAPAYSFLPGVYSIFYLYLTFYFTNDVSFLAHLQWFAMFSPIVPFWITAIYVFCISLK 3122 L + Y VY+ FY Y+T YF +++S + HLQW M+ I+PFW YV + Sbjct 3166 LFVFQVYPICACVYACFYFYVTLYFPSEISVIMHLQWIVMYGAIMPFWFCVTYVAMVIAN 3225 Query 3123 HFHWFFSNYLKKRVMFNGVTFSTFEEAALCTFLLNKEMYLRLRSETLLPLTQYNRYLALY 3182 H W FS Y +K + N + STFEE +L TF++ K+ Y RL++ + YNRYL+LY Sbjct 3226 HVLWLFS-YCRK-IGVNVCSDSTFEETSLTTFMITKDSYCRLKNS--VSDVAYNRYLSLY 3281 Query 3183 NKYKYFSGALDTTSYREAACCHLAKALNDFS-NSGADVLYQPPQTSITSAVLQSGFRKMA 3241 NKY+Y+SG +DT +YREAAC LAKA+ F+ N+G DVLYQPP S++++ LQSG KM Sbjct 3282 NKYRYYSGKMDTAAYREAACSQLAKAMETFNHNNGNDVLYQPPTASVSTSFLQSGIVKMV 3341 Query 3242 FPSGKVEGCMVQVTCGTTTLNGLWLDDTVYCPRHVVCTAEDMLNPNYDDLLIRKSNHSFL 3301 P+ K+E C+V VT G+ TLNGLWLDD VYCPRHV+C++ +M P+Y LL R + F Sbjct 3342 SPTSKIEPCIVSVTYGSMTLNGLWLDDKVYCPRHVICSSSNMNEPDYSALLCRVTLGDFT 3401 Query 3302 VQAGNVQLRVIGHSMQNCLLRLKVDTSNPKTPKYKFVRIQPGQTFSVLACYNGSPSGVYQ 3361 + +G + L V+ + MQ C L L V NP TPKY F ++PG+TF+VLA YNG P G + Sbjct 3402 IMSGRMSLTVVSYQMQGCQLVLTVSLQNPYTPKYTFGNVKPGETFTVLAAYNGRPQGAFH 3461 Query 3362 CAMRPNHTIKGSFLNGSCGSVGFNIDYDCVSFCYMHHMELPTGVHAGTDLEGKFYGPFVD 3421 MR ++TIKGSFL GSCGSVG+ + D V F YMH +EL TG H GTD G FYGP+ D Sbjct 3462 VTMRSSYTIKGSFLCGSCGSVGYVLTGDSVKFVYMHQLELSTGCHTGTDFTGNFYGPYRD 3521 Query 3422 RQTAQAAGTDTTITLNVLAWLYAAVINGDRWFLNRFTTTLNDFNLVAMKYNYEPLTQDHV 3481 Q Q D T+NV+AWLYAA++N WF+ + DFN+ AM + + D V Sbjct 3522 AQVVQLPVKDYVQTVNVIAWLYAAILNNCAWFVQNDVCSTEDFNVWAMANGFSQVKADLV 3581 Query 3482 DILGPLSAQTGIAVLDMCAALKELLQNGMNGRTILGSTILEDEFTPFDVVRQCSGVTFQG 3541 L L++ TG+++ + AA+K L G GR ILGS EDE P DV +Q +GV Q Sbjct 3582 --LDALASMTGVSIETLLAAIKRLYM-GFQGRQILGSCTFEDELAPSDVYQQLAGVKLQS 3638 Query 3542 KFKKIVKGTHHWMLL-TFLTSLLILVQSTQWSLFFFVYENAFLPFALGIMAVAACAMLLV 3600 K K+ +K T +W+L+ TFL S I+ +W++F ++ + L ++ + MLLV Sbjct 3639 KTKRFIKETIYWILISTFLFS-CIISAFVKWTIFMYI-NTHMIGVTLCVLCFVSFMMLLV 3696 Query 3601 KHKHAFLCLFLLPSLATVAYFN-MVYMPASWVMRIMTWLELADTSLSGYRLKDCVMYASA 3659 KHKH +L ++++P L T+ Y N +V + WL +++ + + V Y Sbjct 3697 KHKHFYLTMYIIPVLCTLFYVNYLVVYKEGFRGFTYVWLSYFVPAVNFTYVYE-VFYGCI 3755 Query 3660 L-VLLILMTARTVYDDAARRVWTLMNVITLVYKVYYGNSLDQAISMWALVISVTSNYSGV 3718 L V I +T ++ D ++ + ++TL+ Y+G++L++ + ++ T + Sbjct 3756 LCVFAIFITMHSINHDIFSLMFLVGRIVTLISMWYFGSNLEEDVLLFITAFLGTYTW--- 3812 Query 3719 VTTIMFLARA-IVFVCVEYYPLLFITGNTLQCIMLVYCFLGYCCCCYFGLFCLLNRYFRL 3777 TTI+ LA A IV + F ++ I+L Y F+GY CY+G F LLN FR+ Sbjct 3813 -TTILSLAIAKIVANWLSVNIFYFTDVPYIKLILLSYLFIGYILSCYWGFFSLLNSVFRM 3871 Query 3778 TLGVYDYLVSTQEFRYMNSQGLLPPKSSIDAFKLNIKLLGIGGKPCIKVATVQSKMSDVK 3837 +GVY+Y +S QE RYMN+ GL PP++S +A LN+KLLGIGG P I+V+ +QSK++DVK Sbjct 3872 PMGVYNYKISVQELRYMNANGLRPPRNSFEAILLNLKLLGIGGVPVIEVSQIQSKLTDVK 3931 Query 3838 CTSVVLLSVLQQLRVESSSKLWAQCVQLHNDILLAKDTTEAFEKMVSLLSVLLSMQGAVD 3897 C +VVLL+ LQ L V S+SKLW C LHN+IL D + AF+K+ LL VL + AVD Sbjct 3932 CANVVLLNCLQHLHVASNSKLWQYCSVLHNEILSTSDLSVAFDKLAQLLIVLFANPAAVD 3991 Query 3898 ------INKLCEEMLDNRATLQAIASEFSSLPSYAAYATAQEAYEQAVSNGD-SEVVLKK 3950 I+++ ++ + + LQA+ SEF ++ S+ Y A++ A ++G ++ +K+ Sbjct 3992 TKCLASIDEVSDDYVQDSTVLQALQSEFVNMASFVEYEVAKKNLADAKNSGSVNQQQIKQ 4051 Query 3951 LKKSLNVAKSEFDHDAAMQRKLEKMADQAMTQMYKQARSEDKRAKVTSAMQTMLFTMLRK 4010 L+K+ N+AKS ++ D A+ RKLE+MAD A+T MYK+AR DK++KV SA+QTMLF+M+RK Sbjct 4052 LEKACNIAKSVYERDKAVARKLERMADLALTNMYKEARINDKKSKVVSALQTMLFSMVRK 4111 Query 4011 LDNDALNNIINNARDGCVPLNIIPLTTAAKLMVVVPDYGTYKNTCDGNTFTYASALWEIQ 4070 LDN ALN+I++NA GCVPL+ IP A L +V+PD + D TYA ++W IQ Sbjct 4112 LDNQALNSILDNAVKGCVPLSAIPALAANTLTIVIPDKQVFDKVVDNVYVTYAGSVWHIQ 4171 Query 4071 QVVDADSKIVQLSEINMDNSPNLAWPLIVTALRANSAVK--LQNNELSPVALRQMSCAAG 4128 V DAD QL++I++D++ WPL++ A R N +QNNEL P L+ +G Sbjct 4172 TVQDADGINKQLTDISVDSN----WPLVIIANRYNEVANAVMQNNELMPHKLKIQVVNSG 4227 Query 4129 TTQTACTDDNALAYYNNAKGGRFVLALLSDHQDLKWARFPKSDGTGTIYTELEPPCRFVT 4188 + + YYNN GR V A+LSD LK+ + K DG + EL+PPC+F Sbjct 4228 SDMNC--NIPTQCYYNNGSSGRIVYAVLSDVDGLKYTKIMKDDGNCVV-LELDPPCKFSI 4284 Query 4189 DTPKGPKVKYLYFIKGLNNLNRGMVLGSLAATVRLQAGNATEVPANSTVLSFCAFAVDPA 4248 KG K+KYLYFIKG N L RG V+G+L++T+RLQAG ATE ANS++LS CAF+VDP Sbjct 4285 QDVKGLKIKYLYFIKGCNTLARGWVVGTLSSTIRLQAGVATEYAANSSILSLCAFSVDPK 4344 Query 4249 KAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPEANMDQESFGGASCCLYCRCHIDHP 4308 K Y DY+ GG PI NCVKMLC H GTG AIT+ PEA ++Q+S+GGAS C+YCR ++HP Sbjct 4345 KTYLDYIQQGGVPIINCVKMLCDHAGTGMAITIKPEATINQDSYGGASVCIYCRARVEHP 4404 Query 4309 NPKGFCDLKGKYVQIPTTCANDPVGFTLRNTVCTVCGMWKGYGCSC 4354 + G C L+GK+VQ+P DP+ + L + VC VCG W+ CSC Sbjct 4405 DVDGICKLRGKFVQVPLG-IKDPILYVLTHDVCQVCGFWRDGSCSC 4449 Range 2: 1358 to 1514 Score:91.3 bits(225), Expect:3e-16, Method:Compositional matrix adjust., Identities:57/157(36%), Positives:82/157(52%), Gaps:2/157(1%) Query 1005 LKLTDNVAIKCIDIVKEAQSAKPTVIVNAANTHLKHGGGVAGALNKATNGAMQNESDEYI 1064 L +T NV DI+ A+ K VIVN AN H+ HGGGVA A+ A E+ + Sbjct 1358 LCITPNVCFVKGDIINVARLVKADVIVNPANGHMLHGGGVAKAIAVAAGKKFSKETAAMV 1417 Query 1065 RQNGPLTVGGSCLLSGHNLAEKCLHVVGPNL--NAGEDVQLLKRAYENFNSQDVLLAPLL 1122 + G VG + +G L + L++VGP+ + + LL RAY++ N+ D L+ L+ Sbjct 1418 KSKGVCQVGDCYVSTGGKLCKTILNIVGPDARQDGRQSYVLLARAYKHLNNYDCCLSTLI 1477 Query 1123 SAGIFGAKPLQSLKMCVEIVRTQVYLAVNDKSLYDQI 1159 SAGIF SL + +V QV L N+K +D I Sbjct 1478 SAGIFSVPADVSLTYLLGVVDKQVILVSNNKEDFDII 1514 Range 3: 594 to 937 Score:69.7 bits(169), Expect:8e-10, Method:Compositional matrix adjust., Identities:90/379(24%), Positives:155/379(40%), Gaps:47/379(12%) Query 579 RLVDAMVYTSDLLTNSVVVMAYVTGGLVQQTMQWLSNMLGTAVDKLKPVFTWVEAKLSAG 638 R+ A Y + V + LV + + W + ML D P W+ +L G Sbjct 594 RVSVATFYIEHYVNRLVTQFKLLGTTLVNKMVNWFNTML----DASAPATGWLLYQLLNG 649 Query 639 VEFLRDAWEILKFLITGVFDVIKGQIQVATDNIKECVKIFLGVVNKALEMCLDQVTIAGT 698 + + A LI ++ + + ECV + + L+ V I G Sbjct 650 LFVVSQANFNFVALIPDYAKILVNKFYTFFKLLLECVTVDVLKDMPVLKTINGLVCIVGN 709 Query 699 KLRALNLGEVFIAQSRGLYRQCIRGKEQLQLLMPLKA-PKEVTFLEGDAHDTVLTSEEVV 757 K F S GL I G ++P A +++ F EG +E V+ Sbjct 710 K---------FYNVSTGL----IPG-----FVLPCNAQEQQIYFFEG-------VAESVI 744 Query 758 LKSGELEALETPIDSF---TSGAVVGTPVCINGLMLLELENKEQYCALSPGLLATNNVFR 814 ++ +E +++ + S+ V I+ + + + +K P ++ N+ Sbjct 745 VEDDVIENVKSSLSSYEYCQPPKSVEKICIIDNMYMGKCGDK-----FFPIVMNDKNICL 799 Query 815 LKGG--APVKG--VTFGED-TVLEVQGYKNVKITFELDVRVDKVLNEKCSVYTVESGTEV 869 L P G V F E V+E+ VK+ F+LD D +L + CS + VE G V Sbjct 800 LDQAWRFPCAGRKVNFNEKPVVMEIPSLMTVKVMFDLDSTFDDILGKVCSEFEVEKGVTV 859 Query 870 TEFACVVAEAVVKTLQPVSD---LLTPMGIDLDEWSVATFYLFDDAGEEKLSSRMYCSFY 926 +F VV +A+ L + + + L++ + YLFD+AG+E ++SRMYC+F Sbjct 860 DDFVAVVCDAIENALNSCKEHPVVGYQVRAFLNKLNENVVYLFDEAGDEAMASRMYCTF- 918 Query 927 PPDEEEDCEECEDEEETCE 945 ++ ED E E+T + Sbjct 919 AIEDVEDVISSEAVEDTID 937 >RecName: Full=Replicase polyprotein 1a; Short=pp1a; AltName: Full=ORF1a polyprotein; Contains: RecName: Full=Non-structural protein 1; Short=nsp1; AltName: Full=p9; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p87; Contains: RecName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=PL1-PRO/PL2-PRO; AltName: Full=PLP1/PLP2; AltName: Full=Papain-like proteinases 1/2; AltName: Full=p195; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; AltName: Full=Peptide HD2; Contains: RecName: Full=3C-like proteinase; Short=3CL-PRO; Short=3CLp; AltName: Full=M-PRO; AltName: Full=nsp5; AltName: Full=p34; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; AltName: Full=p5; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; AltName: Full=p23; Contains: RecName: Full=Non-structural protein 9; Short=nsp9; AltName: Full=p12; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; AltName: Full=p14; Contains: RecName: Full=Non-structural protein 11; Short=nsp11 [Scotophilus bat coronavirus 512] Sequence ID: P0C6F6.1 Length: 4128 Range 1: 1984 to 4119 Score:1210 bits(3131), Expect:0.0, Method:Compositional matrix adjust., Identities:783/2260(35%), Positives:1204/2260(53%), Gaps:153/2260(6%) Query 2142 YVITLLFQLCTFTKSTNSRIKASLPT---TIAKNSVKSVAKLCLDVCINYVKSPKFSKL- 2197 Y+ +LL K + ++ A +P I K SVK NY F +L Sbjct 1984 YLFSLLAICFRALKKRDMKVMAGVPERTGIILKRSVK----------YNYKALKFFFRLK 2033 Query 2198 FTIVMWLLLLSICLGSLTYVTAVLGVCLSSLGVPSYCDGVRELYINSSNVTTMDFCQGYF 2257 F + L S+ L +L Y + + + +G P C + Y NS+ D+C G Sbjct 2034 FQYIKVFLKFSLVLYTL-YALMFMFIRFTPVGTP-ICKRYTDGYANST-FDKNDYC-GNV 2089 Query 2258 PCSVCLSGLDSLDSYPALETIQVTISSYKLDLTFLGLAAEWLLAYMLFTKFFYLLGLSAI 2317 C +CL G + L + I K L L +L+ ++F FF +G++ Sbjct 2090 LCKICLYGYEELSDFTHTRVIW---QHLKDPLIGNILPLFYLVFLIIFGGFFVRIGITYF 2146 Query 2318 MQAFFGY--FASHFISNSWLMWFIISIVQMAPVSAMVRMYIFFASFYYVWKSYVHIMDGC 2375 + + A + N WL+ + P ++M + + + H++ GC Sbjct 2147 IMQYINAAGVALGYQDNVWLL-------HLLPFNSMGNIIVVAFIVTRILLFLKHVLFGC 2199 Query 2376 TSSTCMMCYKRNRATRVECTTIVNGVKRSFYVYANGGRGFCKAHNWNCLNCDTFCAGSTF 2435 +C+ C K + TRV TI+ GV +SFYV ANGG+ FCK HN+ C++CD++ G TF Sbjct 2200 DKPSCIACSKSAKLTRVPLQTILQGVTKSFYVNANGGKKFCKKHNFFCVDCDSYGYGCTF 2259 Query 2436 ISDEVARDLSLQFKRPINPTDQSAYVVDSVTVKNGALHLYFDKAGQKTYERHPLSHFVNL 2495 I+D +A +LS K + PT + ++D V NG +LY K + + Sbjct 2260 INDVIAPELSNVTKLNVIPTGPATIIIDKVEFSNGFYYLYSGSTFWKYNFDITEAKYACK 2319 Query 2496 DNLRANNTKGSLPINVIVFDGKSKCEESAAKSASVYYSQLMCQPILLLDQALVSDVGDST 2555 D L+ N + + +VF+ S + K+A VY+SQL+C+PI L+D AL++ + + Sbjct 2320 DVLKNCN----ILTDFVVFN-NSGSNVTQVKNACVYFSQLLCKPIKLVDSALLASL--NV 2372 Query 2556 EVSVKMFDAYVDTFSATFSVPMEKLKALVATAHSELAKGVALDGVLSTFVSAARQGVVDT 2615 + S + A+V+ S +F + + + R+ + + Sbjct 2373 DFSANLHKAFVEVLSNSFGKDLSNCSNM----------------------NECRESLGLS 2410 Query 2616 DVDTKDVIECLKLSHHSDIEVTGDSCNNFMLTYNKVE-NMTPRDLGACIDCNARHINAQV 2674 DV ++ + +H D+ ++ S NN +++Y K E + D+ C+ A+ +N V Sbjct 2411 DVPEEEFSAAVSEAHRYDVLISDVSFNNLIVSYAKPEEKLAVHDIANCMRVGAKVVNHNV 2470 Query 2675 AKSHNVSLVWNVKDYMSLSEQLRKQIRSAAKKNNIPFRLTCATTRQVVNVITTKISLKGG 2734 NV +VW KD+++LSE+ RK I K I F LT R + + T ++ K G Sbjct 2471 LTKDNVPVVWLAKDFIALSEEARKYIVRTTKTKGINFMLTFNDRRMHLTIPTISVANKKG 2530 Query 2735 KVVSTWFKLLLKVTL-LCVL-AALFCYVIMPVHSLSVHDGYTNEIIGYKAIQDGVTRDIV 2792 + + F L LCVL LF + S V ++ +K I++GV + Sbjct 2531 AGLPSLFTRLYSFFWHLCVLIVVLFVATSLLDFSAQVT---SDTQYDFKYIENGVLKVFE 2587 Query 2793 STDDCFANKHAGFDSWFSQRGGSY-RNDKNCPVVAAIITREIGFIVPGLPGTVLRALNGD 2851 DC N F+ W + + GS N + CP+V + E+ +I PG+P V L G Sbjct 2588 KPLDCVHNAFVNFNEWHNAKFGSIPTNSRRCPIVVGT-SDEVRYI-PGVPAGVF--LYGK 2643 Query 2852 FLHFLPRVFSAVGNICYTPSKLIEYSDFATSACVLAAECTIFKDAMGKPVPYCYDTNLLE 2911 L F +C+ L + +C+ + CT G+ V YCY +++ Sbjct 2644 SLIFAMSTIFGTSGLCFDDRGLTD-----PDSCIFNSACTTLSGIGGRNV-YCYREGVVD 2697 Query 2912 GSISYSELRPDTRYVLMDGSIIQFPNTYLEG-SVRVVTTFDAEYCRHGTCERSEVGVCLS 2970 + YS L P + Y LMDG+ I P G +R + T YCR G C S+ GVC+ Sbjct 2698 NAKLYSSLLPHSYYRLMDGNHIVLPEIITRGFGIRTIKTQAMTYCRTGECIDSQAGVCVG 2757 Query 2971 TSGRWVLNNEHYRALPG--VFCGVDAMNLIANIFTPLVQPVGALDVSASVVAGGIIAILV 3028 +V Y PG CG +L+ N+ + +S ++ ++A Sbjct 2758 LDRFFV-----YSKTPGSDYVCGTGFFSLLFNVIGMFSNSIPVTVMSGQILLNCVVAFTA 2812 Query 3029 TCAAYYFMKFRRAFGEYNHVVAANALLFLMSFTILCLAPAYSFLPGVYSIFYL-YLTFYF 3087 A + F KF+R FG+ + V +S + + S++ SI L Y T YF Sbjct 2813 VMACFAFTKFKRLFGDMSFGV--------LSVGLCTVVNNLSYVVTQNSIGMLAYATLYF 2864 Query 3088 --TNDV--SFLAHLQWFAMFSPIVPFWITAIYVFCISLKHFHWFFSNYLKKRV---MFNG 3140 T V S++ H+ + + + P+W+ Y+ C L+ F N K +V +F G Sbjct 2865 LCTKGVRYSWVWHVGFAISYCFLAPWWVVLAYLICALLE----FLPNLFKLKVSTQLFEG 2920 Query 3141 VTF-STFEEAALCTFLLNKEMYLRLRSETLLPLTQYNRYLALYNKYKYFSGALDTTSYRE 3199 F +FE AA TF+L+ Y +L + + + +Y A YN+YKY+SG+ YR Sbjct 2921 DKFVGSFESAASGTFVLDMHSYQKLANS--ISTEKLKQYCASYNRYKYYSGSASEADYRL 2978 Query 3200 AACCHLAKALNDFSNSGADVLYQPPQTSITSAVLQSGFRKMAFPSGKVEGCMVQVTCGTT 3259 A HLAKA++DF+N D LY PP S S LQ+G RKMA PSG VEGC+V+V+ G Sbjct 2979 ACFAHLAKAMSDFANDHMDKLYTPPTVSYNST-LQAGLRKMAQPSGIVEGCIVRVSYGNL 3037 Query 3260 TLNGLWLDDTVYCPRHVVCTAEDMLNP-NYDDLLIRKSNHSFLVQAGNVQLRVIGHSMQN 3318 TLNGLWL DTV CPRHV+ A + N +YD + H+F + +GN+ L VI SM+ Sbjct 3038 TLNGLWLGDTVICPRHVI--ASNTTNVIDYDHAMSLVRLHNFSISSGNMFLGVISASMRG 3095 Query 3319 CLLRLKVDTSNPKTPKYKFVRIQPGQTFSVLACYNGSPSGVYQCAMRPNHTIKGSFLNGS 3378 LL +KV+ SN TP Y + ++PG +F++LACY+GS +GVY MR N+TI+GSF++G+ Sbjct 3096 TLLHIKVNQSNVNTPNYTYKVLKPGDSFNILACYDGSAAGVYGVNMRTNYTIRGSFISGA 3155 Query 3379 CGSVGFNIDYDCVSFCYMHHMELPTGVHAGTDLEGKFYGPFVDRQTAQAAGTDTTITLNV 3438 CGS G+NI+ V FCYMHH+EL +G H G+D++G YG + D+ T Q G +T NV Sbjct 3156 CGSPGYNINNGVVEFCYMHHLELGSGCHVGSDMDGTMYGKYEDQPTLQIEGASNLVTENV 3215 Query 3439 LAWLYAAVINGDRWFLNRFTTTLNDFNLVAMKYNYEPLTQDHVDILGPLSAQTGIAVLDM 3498 +WLY A+INGDRW+L+ + ++ +N A++ L +VD L A+TG+ V + Sbjct 3216 CSWLYGALINGDRWWLSSVSVGVDTYNEWALRNGMTALK--NVDCFSLLVAKTGVDVGRL 3273 Query 3499 CAALKELLQNGMNGRTILGSTILEDEFTPFDVVRQCSGVTFQ-GKFKKIVKGTHHWMLLT 3557 A++++L N G++ILG T L DEFT +VV+Q GVT Q GK + + L Sbjct 3274 LASIQKLHGN-FGGKSILGCTSLCDEFTLSEVVKQMYGVTLQSGKVSRAFRNASIVCCLL 3332 Query 3558 FLTSLLILVQSTQWSLFFFVYENAFLPFALGIMAVAACAMLLVKHKHAFLCLFLLPSLAT 3617 FL L + S F++ P L I+ ++ MLLVKHK FL L+LLPSL Sbjct 3333 FL----FLSEMLNHSKLFWINPGYITPVFLAIIVASSALMLLVKHKLLFLQLYLLPSLCI 3388 Query 3618 VAYFNMV--YMPASWVMRIMTWLELADTSLSGYRLKDCVMYASALVLLILMTARTVYDDA 3675 V+ +N+ Y ++++ + G+ + + + ++ L T R + Sbjct 3389 VSGYNIFKDYHFYTYMLEEFDY----KVPFGGFNVTGVLNISLCCFVMGLHTFR--FLQT 3442 Query 3676 ARRVWT-LMNVITLVYKVYYGNSLDQAISMWALVISVTSNYSGVVTTIMFLARAIVFVCV 3734 ++++ ++ V+T++Y YY + + L+++ S + T F+ A + Sbjct 3443 PNKIFSYVVAVLTVLYTYYY------STDVLGLILTSMSGF----TNYWFIGTATYKLAT 3492 Query 3735 EYYP--LLFITGNTLQCIMLVYCFLGYCCCCYFGLFCLLNRYFRLTLGVYDYLVSTQEFR 3792 P L + + ++ ++ +Y LGYC C Y+G +NR+ +LTLG Y++ VS EF+ Sbjct 3493 YVLPHTSLLDSFDAIKAVVFLYLLLGYCNCVYYGSLYWINRFCKLTLGCYEFKVSAAEFK 3552 Query 3793 YMNSQGLLPPKSSIDAFKLNIKLLGIGGKPCIKVATVQSKMSDVKCTSVVLLSVLQQLRV 3852 YM + GL P DA L++KL+G+GG+ IK+++VQSK++D+KCT+VVLL L + + Sbjct 3553 YMVANGLRAPTGVFDALILSLKLIGVGGRKTIKISSVQSKLTDLKCTNVVLLGCLSNMNI 3612 Query 3853 ESSSKLWAQCVQLHNDILLAKDTTEAFEKMVSLLSVLLSMQGAVDINKLCEEMLDNRATL 3912 ++S+ WA CV LHN I L D A E +++LL+ LS A +++L + ++ + L Sbjct 3613 AANSREWAYCVDLHNKINLCNDAEAAQEMLLALLAFFLSKNSAFGVDELLDSYFNDSSVL 3672 Query 3913 QAIASEFSSLPSYAAYATAQEAYEQAVSNGDSEVVLKKLKKSLNVAKSEFDHDAAMQRKL 3972 Q++A+ + +LPSY AY TA+++YE A++NG ++K+L+ ++NVAKSEFD +A+ QRKL Sbjct 3673 QSVAATYVNLPSYLAYETARQSYEDALANGSPPQLVKQLRHAMNVAKSEFDREASTQRKL 3732 Query 3973 EKMADQAMTQMYKQARSEDKRAKVTSAMQTMLFTMLRKLDNDALNNIINNARDGCVPLNI 4032 ++MA+QA +QMYK+AR+ ++++KV SAM ++LF MLR+LD +++ I++ A+DG VPL+I Sbjct 3733 DRMAEQAASQMYKEARAVNRKSKVVSAMHSLLFGMLRRLDMSSVDTILSLAKDGVVPLSI 3792 Query 4033 IPLTTAAKLMVVVPDYGTYKNTCDGNTFTYASALWEIQQVVDADSKIVQLSEINMDNSPN 4092 IP +A KL +VV D +Y YA +W + + D D K V E+ N + Sbjct 3793 IPAVSATKLNIVVSDIESYSKIQREGCVHYAGVIWSVVDIKDNDGKPVHAKEVVTSNVES 3852 Query 4093 LAWPLIVTALRANSAVKLQNNELSPVALRQMSCAAGTTQTACTDDNALAYYNNAKGGRFV 4152 LAWPL + R +KLQNNE+ P ++Q A + D NAL Y+N G F+ Sbjct 3853 LAWPLFLNCER---IIKLQNNEIIPSKIKQRPIKA-EGEGVVADGNAL--YSNEGGRTFM 3906 Query 4153 LALLSDHQDLKWARFPKSDGTGTIYTELEPPCRFVTDTPKGPKVKYLYFIKGLNNLNRGM 4212 A +SD DLK ++ G+ I ELEPPC+F+ + P GP VKYLYF++ LNNL RG Sbjct 3907 YAFISDKPDLKVVKWEFDGGSNAI--ELEPPCKFLVEAPSGPVVKYLYFVRNLNNLRRGA 3964 Query 4213 VLGSLAATVRLQAGNATEVPANSTVLSFCAFAVDPAKAYKDYLASGGQPITNCVKMLCTH 4272 VLG + ATVRLQAG TE NS++L+ CAFAVDP K Y D + SG +P+ NCVKML Sbjct 3965 VLGFIGATVRLQAGKQTEQATNSSLLTLCAFAVDPPKTYLDAVKSGHRPVGNCVKMLANG 4024 Query 4273 TGTGQAITVTPEANMDQESFGGASCCLYCRCHIDHPNPKGFCDLKGKYVQIPTTCANDPV 4332 +G GQAIT EA+ +Q+S+GGAS CLYCR H++HP+ GFC L+GKYVQ+P DP+ Sbjct 4025 SGNGQAITNGVEASTNQDSYGGASVCLYCRAHVEHPDMDGFCKLRGKYVQVPLGTL-DPI 4083 Query 4333 GFTLRNTVCTVCGMWKGYGCSCDQLREPMMQSADASTFLN 4372 F L NTVC VCG W+ GC+CD+ ++QS D S +LN Sbjct 4084 RFVLENTVCKVCGCWQANGCTCDR---AVIQSVD-SGYLN 4119 Range 2: 1323 to 1486 Score:77.4 bits(189), Expect:3e-12, Method:Compositional matrix adjust., Identities:62/175(35%), Positives:87/175(49%), Gaps:16/175(9%) Query 1030 IVNAANTHLKHGGGVAGALNKATNGAMQNESDEYIRQNGPLTVGGSCLLSGHNLAEKCLH 1089 +VNAAN L HGGG+A AL+ T G +Q S++Y+ +NG + VG L+ L+ Sbjct 1323 VVNAANEQLSHGGGIAKALDDLTKGELQVLSNQYVSRNGSIKVGSGVLIKCKE--HSILN 1380 Query 1090 VVGPNLNAGEDVQLLKRAYEN-FNSQDVLLAPLLSAGIFGAKPLQSLKMCVEIVRTQV-- 1146 VVGP +LL +AY F + V L PLLS GIF +SL + V +V Sbjct 1381 VVGPR-KGKHAAELLTKAYTFVFKQKGVPLMPLLSVGIFKVPITESLAAFLACVGDRVCK 1439 Query 1147 -YLAVNDKSLYDQIVLDYLDSLKPKVESPNKEEEPKLEEPKAVQPVAEKPV-DVK 1199 + + + L Q + + +P E P ++E K VQ EKPV DVK Sbjct 1440 CFCYTDKERLAIQNFVTSFQTEQP------VEPLPVIQEVKGVQ--LEKPVPDVK 1486 >RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Non-structural protein 1; Short=nsp1; AltName: Full=p9; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p87; Contains: RecName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=PL1-PRO/PL2-PRO; AltName: Full=PLP1/PLP2; AltName: Full=Papain-like proteinases 1/2; AltName: Full=p195; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; AltName: Full=Peptide HD2; Contains: RecName: Full=3C-like proteinase; Short=3CL-PRO; Short=3CLp; AltName: Full=M-PRO; AltName: Full=nsp5; AltName: Full=p34; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; AltName: Full=p5; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; AltName: Full=p23; Contains: RecName: Full=Viral protein genome-linked nsp9; AltName: Full=Non-structural protein 9; Short=nsp9; AltName: Full=RNA-capping enzyme subunit nsp9; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; AltName: Full=p14; Contains: RecName: Full=RNA-directed RNA polymerase nsp12; Short=Pol; Short=RdRp; AltName: Full=nsp12; AltName: Full=p100; Contains: RecName: Full=Helicase; Short=Hel; AltName: Full=nsp13; AltName: Full=p66; AltName: Full=p66-HEL; Contains: RecName: Full=Exoribonuclease; Short=ExoN; AltName: Full=nsp14; Contains: RecName: Full=Uridylate-specific endoribonuclease; AltName: Full=NendoU; AltName: Full=nsp15; Contains: RecName: Full=Putative 2'-O-methyl transferase; AltName: Full=nsp16 [Scotophilus bat coronavirus 512] Sequence ID: P0C6W0.1 Length: 6793 Range 1: 1984 to 4119 Score:1207 bits(3123), Expect:0.0, Method:Compositional matrix adjust., Identities:783/2258(35%), Positives:1206/2258(53%), Gaps:149/2258(6%) Query 2142 YVITLLFQLCTFTKSTNSRIKASLPT---TIAKNSVKSVAKLCLDVCINYVKSPKFSKL- 2197 Y+ +LL K + ++ A +P I K SVK NY F +L Sbjct 1984 YLFSLLAICFRALKKRDMKVMAGVPERTGIILKRSVK----------YNYKALKFFFRLK 2033 Query 2198 FTIVMWLLLLSICLGSLTYVTAVLGVCLSSLGVPSYCDGVRELYINSSNVTTMDFCQGYF 2257 F + L S+ L +L Y + + + +G P C + Y NS+ D+C G Sbjct 2034 FQYIKVFLKFSLVLYTL-YALMFMFIRFTPVGTP-ICKRYTDGYANST-FDKNDYC-GNV 2089 Query 2258 PCSVCLSGLDSLDSYPALETIQVTISSYKLDLTFLGLAAEWLLAYMLFTKFFYLLGLSAI 2317 C +CL G + L + I + K L L +L+ ++F FF +G++ Sbjct 2090 LCKICLYGYEELSDFTHTRVIWQHL---KDPLIGNILPLFYLVFLIIFGGFFVRIGITYF 2146 Query 2318 MQAFFGY--FASHFISNSWLMWFIISIVQMAPVSAMVRMYIFFASFYYVWKSYVHIMDGC 2375 + + A + N WL+ + P ++M + + + H++ GC Sbjct 2147 IMQYINAAGVALGYQDNVWLL-------HLLPFNSMGNIIVVAFIVTRILLFLKHVLFGC 2199 Query 2376 TSSTCMMCYKRNRATRVECTTIVNGVKRSFYVYANGGRGFCKAHNWNCLNCDTFCAGSTF 2435 +C+ C K + TRV TI+ GV +SFYV ANGG+ FCK HN+ C++CD++ G TF Sbjct 2200 DKPSCIACSKSAKLTRVPLQTILQGVTKSFYVNANGGKKFCKKHNFFCVDCDSYGYGCTF 2259 Query 2436 ISDEVARDLSLQFKRPINPTDQSAYVVDSVTVKNGALHLYFDKAGQKTYERHPLSHFVNL 2495 I+D +A +LS K + PT + ++D V NG +LY K + + Sbjct 2260 INDVIAPELSNVTKLNVIPTGPATIIIDKVEFSNGFYYLYSGSTFWKYNFDITEAKYACK 2319 Query 2496 DNLRANNTKGSLPINVIVFDGKSKCEESAAKSASVYYSQLMCQPILLLDQALVSDVGDST 2555 D L+ N + + +VF+ S + K+A VY+SQL+C+PI L+D AL++ + + Sbjct 2320 DVLKNCN----ILTDFVVFN-NSGSNVTQVKNACVYFSQLLCKPIKLVDSALLASL--NV 2372 Query 2556 EVSVKMFDAYVDTFSATFSVPMEKLKALVATAHSELAKGVALDGVLSTFVSAARQGVVDT 2615 + S + A+V+ S +F + + + R+ + + Sbjct 2373 DFSANLHKAFVEVLSNSFGKDLSNCSNM----------------------NECRESLGLS 2410 Query 2616 DVDTKDVIECLKLSHHSDIEVTGDSCNNFMLTYNKVE-NMTPRDLGACIDCNARHINAQV 2674 DV ++ + +H D+ ++ S NN +++Y K E + D+ C+ A+ +N V Sbjct 2411 DVPEEEFSAAVSEAHRYDVLISDVSFNNLIVSYAKPEEKLAVHDIANCMRVGAKVVNHNV 2470 Query 2675 AKSHNVSLVWNVKDYMSLSEQLRKQIRSAAKKNNIPFRLTCATTRQVVNVITTKISLKGG 2734 NV +VW KD+++LSE+ RK I K I F LT R + + T ++ K G Sbjct 2471 LTKDNVPVVWLAKDFIALSEEARKYIVRTTKTKGINFMLTFNDRRMHLTIPTISVANKKG 2530 Query 2735 KVVSTWFKLLLKVTL-LCVL-AALFCYVIMPVHSLSVHDGYTNEIIGYKAIQDGVTRDIV 2792 + + F L LCVL LF + S V ++ +K I++GV + Sbjct 2531 AGLPSLFTRLYSFFWHLCVLIVVLFVATSLLDFSAQVT---SDTQYDFKYIENGVLKVFE 2587 Query 2793 STDDCFANKHAGFDSWFSQRGGSY-RNDKNCPVVAAIITREIGFIVPGLPGTVLRALNGD 2851 DC N F+ W + + GS N + CP+V + E+ +I PG+P V L G Sbjct 2588 KPLDCVHNAFVNFNEWHNAKFGSIPTNSRRCPIVVGT-SDEVRYI-PGVPAGVF--LYGK 2643 Query 2852 FLHFLPRVFSAVGNICYTPSKLIEYSDFATSACVLAAECTIFKDAMGKPVPYCYDTNLLE 2911 L F +C+ L + +C+ + CT G+ V YCY +++ Sbjct 2644 SLIFAMSTIFGTSGLCFDDRGLTD-----PDSCIFNSACTTLSGIGGRNV-YCYREGVVD 2697 Query 2912 GSISYSELRPDTRYVLMDGSIIQFPNTYLEG-SVRVVTTFDAEYCRHGTCERSEVGVCLS 2970 + YS L P + Y LMDG+ I P G +R + T YCR G C S+ GVC+ Sbjct 2698 NAKLYSSLLPHSYYRLMDGNHIVLPEIITRGFGIRTIKTQAMTYCRTGECIDSQAGVCVG 2757 Query 2971 TSGRWVLNNEHYRALPG--VFCGVDAMNLIANIFTPLVQPVGALDVSASVVAGGIIAILV 3028 +V Y PG CG +L+ N+ + +S ++ ++A Sbjct 2758 LDRFFV-----YSKTPGSDYVCGTGFFSLLFNVIGMFSNSIPVTVMSGQILLNCVVAFTA 2812 Query 3029 TCAAYYFMKFRRAFGEYNHVVAANALLFLMSFTILCLAPAYSFLPGVYSIFYL-YLTFYF 3087 A + F KF+R FG+ + V +S + + S++ SI L Y T YF Sbjct 2813 VMACFAFTKFKRLFGDMSFGV--------LSVGLCTVVNNLSYVVTQNSIGMLAYATLYF 2864 Query 3088 --TNDV--SFLAHLQWFAMFSPIVPFWITAIYVFCISLKHFHWFFSNYLKKRV---MFNG 3140 T V S++ H+ + + + P+W+ Y+ C L+ F N K +V +F G Sbjct 2865 LCTKGVRYSWVWHVGFAISYCFLAPWWVVLAYLICALLE----FLPNLFKLKVSTQLFEG 2920 Query 3141 VTF-STFEEAALCTFLLNKEMYLRLRSETLLPLTQYNRYLALYNKYKYFSGALDTTSYRE 3199 F +FE AA TF+L+ Y +L + + + +Y A YN+YKY+SG+ YR Sbjct 2921 DKFVGSFESAASGTFVLDMHSYQKLANS--ISTEKLKQYCASYNRYKYYSGSASEADYRL 2978 Query 3200 AACCHLAKALNDFSNSGADVLYQPPQTSITSAVLQSGFRKMAFPSGKVEGCMVQVTCGTT 3259 A HLAKA++DF+N D LY PP S S LQ+G RKMA PSG VEGC+V+V+ G Sbjct 2979 ACFAHLAKAMSDFANDHMDKLYTPPTVSYNST-LQAGLRKMAQPSGIVEGCIVRVSYGNL 3037 Query 3260 TLNGLWLDDTVYCPRHVVCTAEDMLNP-NYDDLLIRKSNHSFLVQAGNVQLRVIGHSMQN 3318 TLNGLWL DTV CPRHV+ A + N +YD + H+F + +GN+ L VI SM+ Sbjct 3038 TLNGLWLGDTVICPRHVI--ASNTTNVIDYDHAMSLVRLHNFSISSGNMFLGVISASMRG 3095 Query 3319 CLLRLKVDTSNPKTPKYKFVRIQPGQTFSVLACYNGSPSGVYQCAMRPNHTIKGSFLNGS 3378 LL +KV+ SN TP Y + ++PG +F++LACY+GS +GVY MR N+TI+GSF++G+ Sbjct 3096 TLLHIKVNQSNVNTPNYTYKVLKPGDSFNILACYDGSAAGVYGVNMRTNYTIRGSFISGA 3155 Query 3379 CGSVGFNIDYDCVSFCYMHHMELPTGVHAGTDLEGKFYGPFVDRQTAQAAGTDTTITLNV 3438 CGS G+NI+ V FCYMHH+EL +G H G+D++G YG + D+ T Q G +T NV Sbjct 3156 CGSPGYNINNGVVEFCYMHHLELGSGCHVGSDMDGTMYGKYEDQPTLQIEGASNLVTENV 3215 Query 3439 LAWLYAAVINGDRWFLNRFTTTLNDFNLVAMKYNYEPLTQDHVDILGPLSAQTGIAVLDM 3498 +WLY A+INGDRW+L+ + ++ +N A++ L +VD L A+TG+ V + Sbjct 3216 CSWLYGALINGDRWWLSSVSVGVDTYNEWALRNGMTALK--NVDCFSLLVAKTGVDVGRL 3273 Query 3499 CAALKELLQNGMNGRTILGSTILEDEFTPFDVVRQCSGVTFQ-GKFKKIVKGTHHWMLLT 3557 A++++L N G++ILG T L DEFT +VV+Q GVT Q GK + + L Sbjct 3274 LASIQKLHGN-FGGKSILGCTSLCDEFTLSEVVKQMYGVTLQSGKVSRAFRNASIVCCLL 3332 Query 3558 FLTSLLILVQSTQWSLFFFVYENAFLPFALGIMAVAACAMLLVKHKHAFLCLFLLPSLAT 3617 FL L + S F++ P L I+ ++ MLLVKHK FL L+LLPSL Sbjct 3333 FL----FLSEMLNHSKLFWINPGYITPVFLAIIVASSALMLLVKHKLLFLQLYLLPSLCI 3388 Query 3618 VAYFNMV--YMPASWVMRIMTWLELADTSLSGYRLKDCVMYASALVLLILMTARTVYDDA 3675 V+ +N+ Y ++++ + G+ + + + ++ L T R + Sbjct 3389 VSGYNIFKDYHFYTYMLEEFDY----KVPFGGFNVTGVLNISLCCFVMGLHTFR--FLQT 3442 Query 3676 ARRVWT-LMNVITLVYKVYYGNSLDQAISMWALVISVTSNYSGVVTTIMFLARAIVFVCV 3734 ++++ ++ V+T++Y YY + + + +S +NY + T LA ++ Sbjct 3443 PNKIFSYVVAVLTVLYTYYYSTDV---LGLILTSMSGFTNYWFIGTATYKLATYVL---- 3495 Query 3735 EYYPLLFITGNTLQCIMLVYCFLGYCCCCYFGLFCLLNRYFRLTLGVYDYLVSTQEFRYM 3794 + L + + ++ ++ +Y LGYC C Y+G +NR+ +LTLG Y++ VS EF+YM Sbjct 3496 -PHTSLLDSFDAIKAVVFLYLLLGYCNCVYYGSLYWINRFCKLTLGCYEFKVSAAEFKYM 3554 Query 3795 NSQGLLPPKSSIDAFKLNIKLLGIGGKPCIKVATVQSKMSDVKCTSVVLLSVLQQLRVES 3854 + GL P DA L++KL+G+GG+ IK+++VQSK++D+KCT+VVLL L + + + Sbjct 3555 VANGLRAPTGVFDALILSLKLIGVGGRKTIKISSVQSKLTDLKCTNVVLLGCLSNMNIAA 3614 Query 3855 SSKLWAQCVQLHNDILLAKDTTEAFEKMVSLLSVLLSMQGAVDINKLCEEMLDNRATLQA 3914 +S+ WA CV LHN I L D A E +++LL+ LS A +++L + ++ + LQ+ Sbjct 3615 NSREWAYCVDLHNKINLCNDAEAAQEMLLALLAFFLSKNSAFGVDELLDSYFNDSSVLQS 3674 Query 3915 IASEFSSLPSYAAYATAQEAYEQAVSNGDSEVVLKKLKKSLNVAKSEFDHDAAMQRKLEK 3974 +A+ + +LPSY AY TA+++YE A++NG ++K+L+ ++NVAKSEFD +A+ QRKL++ Sbjct 3675 VAATYVNLPSYLAYETARQSYEDALANGSPPQLVKQLRHAMNVAKSEFDREASTQRKLDR 3734 Query 3975 MADQAMTQMYKQARSEDKRAKVTSAMQTMLFTMLRKLDNDALNNIINNARDGCVPLNIIP 4034 MA+QA +QMYK+AR+ ++++KV SAM ++LF MLR+LD +++ I++ A+DG VPL+IIP Sbjct 3735 MAEQAASQMYKEARAVNRKSKVVSAMHSLLFGMLRRLDMSSVDTILSLAKDGVVPLSIIP 3794 Query 4035 LTTAAKLMVVVPDYGTYKNTCDGNTFTYASALWEIQQVVDADSKIVQLSEINMDNSPNLA 4094 +A KL +VV D +Y YA +W + + D D K V E+ N +LA Sbjct 3795 AVSATKLNIVVSDIESYSKIQREGCVHYAGVIWSVVDIKDNDGKPVHAKEVVTSNVESLA 3854 Query 4095 WPLIVTALRANSAVKLQNNELSPVALRQMSCAAGTTQTACTDDNALAYYNNAKGGRFVLA 4154 WPL + R +KLQNNE+ P ++Q A + D NAL Y+N G F+ A Sbjct 3855 WPLFLNCER---IIKLQNNEIIPSKIKQRPIKA-EGEGVVADGNAL--YSNEGGRTFMYA 3908 Query 4155 LLSDHQDLKWARFPKSDGTGTIYTELEPPCRFVTDTPKGPKVKYLYFIKGLNNLNRGMVL 4214 +SD DLK ++ G+ I ELEPPC+F+ + P GP VKYLYF++ LNNL RG VL Sbjct 3909 FISDKPDLKVVKWEFDGGSNAI--ELEPPCKFLVEAPSGPVVKYLYFVRNLNNLRRGAVL 3966 Query 4215 GSLAATVRLQAGNATEVPANSTVLSFCAFAVDPAKAYKDYLASGGQPITNCVKMLCTHTG 4274 G + ATVRLQAG TE NS++L+ CAFAVDP K Y D + SG +P+ NCVKML +G Sbjct 3967 GFIGATVRLQAGKQTEQATNSSLLTLCAFAVDPPKTYLDAVKSGHRPVGNCVKMLANGSG 4026 Query 4275 TGQAITVTPEANMDQESFGGASCCLYCRCHIDHPNPKGFCDLKGKYVQIPTTCANDPVGF 4334 GQAIT EA+ +Q+S+GGAS CLYCR H++HP+ GFC L+GKYVQ+P DP+ F Sbjct 4027 NGQAITNGVEASTNQDSYGGASVCLYCRAHVEHPDMDGFCKLRGKYVQVPLGTL-DPIRF 4085 Query 4335 TLRNTVCTVCGMWKGYGCSCDQLREPMMQSADASTFLN 4372 L NTVC VCG W+ GC+CD+ ++QS D S +LN Sbjct 4086 VLENTVCKVCGCWQANGCTCDR---AVIQSVD-SGYLN 4119 Range 2: 1317 to 1486 Score:77.4 bits(189), Expect:4e-12, Method:Compositional matrix adjust., Identities:63/181(35%), Positives:88/181(48%), Gaps:16/181(8%) Query 1024 SAKPTVIVNAANTHLKHGGGVAGALNKATNGAMQNESDEYIRQNGPLTVGGSCLLSGHNL 1083 S +VNAAN L HGGG+A AL+ T G +Q S++Y+ +NG + VG L+ Sbjct 1317 SVNHDFVVNAANEQLSHGGGIAKALDDLTKGELQVLSNQYVSRNGSIKVGSGVLIKCKE- 1375 Query 1084 AEKCLHVVGPNLNAGEDVQLLKRAYEN-FNSQDVLLAPLLSAGIFGAKPLQSLKMCVEIV 1142 L+VVGP +LL +AY F + V L PLLS GIF +SL + V Sbjct 1376 -HSILNVVGPR-KGKHAAELLTKAYTFVFKQKGVPLMPLLSVGIFKVPITESLAAFLACV 1433 Query 1143 RTQV---YLAVNDKSLYDQIVLDYLDSLKPKVESPNKEEEPKLEEPKAVQPVAEKPV-DV 1198 +V + + + L Q + + +P E P ++E K VQ EKPV DV Sbjct 1434 GDRVCKCFCYTDKERLAIQNFVTSFQTEQP------VEPLPVIQEVKGVQ--LEKPVPDV 1485 Query 1199 K 1199 K Sbjct 1486 K 1486 >RecName: Full=Replicase polyprotein 1a; Short=pp1a; AltName: Full=ORF1a polyprotein; Contains: RecName: Full=Non-structural protein 1; Short=nsp1; AltName: Full=p9; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p87; Contains: RecName: Full=Papain-like protease nsp3; AltName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=PL1-PRO/PL2-PRO; AltName: Full=PLP1/PLP2; AltName: Full=Papain-like proteinase; Short=PL-PRO; AltName: Full=p195; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; AltName: Full=Peptide HD2; Contains: RecName: Full=3C-like proteinase nsp5; Short=3CL-PRO; Short=3CLp; AltName: Full=M-PRO; AltName: Full=nsp5; AltName: Full=p34; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; AltName: Full=p5; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; AltName: Full=p23; Contains: RecName: Full=RNA-capping enzyme subunit nsp9; AltName: Full=Non-structural protein 9; Short=nsp9; AltName: Full=p12; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; AltName: Full=p14; Contains: RecName: Full=Non-structural protein 11; Short=nsp11 [Porcine epidemic diarrhea virus CV777] Sequence ID: P0C6V6.1 Length: 4117 Range 1: 2037 to 4111 Score:1195 bits(3091), Expect:0.0, Method:Compositional matrix adjust., Identities:758/2190(35%), Positives:1150/2190(52%), Gaps:145/2190(6%) Query 2216 YVTAVLGVCLSSLGVPSYCDGVRELYINSSNVTTMDFCQGYFPCSVCLSGLDSLDSYPAL 2275 Y + + + +G P CD V Y NSS ++C C VCL G L + Sbjct 2037 YALLFMTIRFTPIGSP-VCDDVVAGYANSS-FDKNEYCNSVI-CKVCLYGYQELSDFSHT 2093 Query 2276 ETIQVTISSYKLDLTFLGLAAEWLLAYMLFTKFFYLLGLSAIMQAF-FGYFASH--FISN 2332 + + L +G + Y+ F F + + AI F F Y S F+ Sbjct 2094 QVVW-----QHLRDPLIGNVMPFF--YLAFLAIFGGVYVKAITLYFIFQYLNSLGVFLGL 2146 Query 2333 SWLMWFIISIVQMAPVSAMVRMYIFFASFYYVWKSYVHIMDGCTSSTCMMCYKRNRATRV 2392 +WF+ Q+ P + F V H+ GC ++C+ C K R RV Sbjct 2147 QQSIWFL----QLVPFDVFGDEIVVFFIVTRVLMFIKHVCLGCDKASCVACSKSARLKRV 2202 Query 2393 ECTTIVNGVKRSFYVYANGGRGFCKAHNWNCLNCDTFCAGSTFISDEVARDLSLQFKRPI 2452 TI G +SFYV+ANGG FCK HN+ CLNCD++ G TFI+D +A ++ K + Sbjct 2203 PVQTIFQGTSKSFYVHANGGSKFCKKHNFFCLNCDSYGPGCTFINDVIATEVGNVVKLNV 2262 Query 2453 NPTDQSAYVVDSVTVKNGALHLYFDKAGQKTYERHPLSHFVNLDNLRANNTKGSLPINVI 2512 PT + ++D V NG +LY K S + + L+ S+ + I Sbjct 2263 QPTGPATILIDKVEFSNGFYYLYSGDTFWKYNFDITDSKYTCKEALK----NCSIITDFI 2318 Query 2513 VFDGKSKCEESAAKSASVYYSQLMCQPILLLDQALVSDVGDSTEVSVKMFDAYVDTFSAT 2572 VF+ + K+A VY+SQ++C+P+ L+D AL++ + S + + A+V S + Sbjct 2319 VFNNNGS-NVNQVKNACVYFSQMLCKPVKLVDSALLASL--SVDFGASLHSAFVSVLSNS 2375 Query 2573 FSVPMEKLKALVATAHSELAKGVALDGV-LSTFVSAARQGVVDTDVDTKDVIECLKLSHH 2631 F + + + + D V L TF +A + +H Sbjct 2376 FGKDLSSCNDM-----QDCKSTLGFDDVPLDTFNAAVAE------------------AHR 2412 Query 2632 SDIEVTGDSCNNFMLTYNKVENMTP-RDLGACIDCNARHINAQVAKSHNVSLVWNVKDYM 2690 D+ +T S NNF +Y K E P D+ C+ A+ +N V ++ +VW V+D++ Sbjct 2413 YDVLLTDMSFNNFTTSYAKPEEKFPVHDIATCMRVGAKIVNHNVLVKDSIPVVWLVRDFI 2472 Query 2691 SLSEQLRKQIRSAAKKNNIPFRLTCATTRQVVNVITTKISLKGGKVVSTWFKLLLKVTLL 2750 +LSE+ RK I K I F LT R + T I+ K G + ++ K+ L Sbjct 2473 ALSEETRKYIIRTTKVKGITFMLTFNDCRMHTTIPTVCIANKKGAGLPSFSKVKKFFWFL 2532 Query 2751 C--VLAALFCYVIMPVHSLSVHDGYTNEIIGYKAIQDGVTRDIVSTDDCFANKHAGFDSW 2808 C ++AA F + + D + +K I+ G + + C N FD W Sbjct 2533 CLFIVAAFFALSFLDFSTQVSSDSDYD----FKYIESGQLKTFDNPLSCVHNVFINFDQW 2588 Query 2809 FSQRGG-SYRNDKNCPVVAAIITREIGFIVPGLPGTVLRALNGDFLHFLPRVFSAVGNIC 2867 + G + N+ +CP+V + + VPG+P V L G L F +C Sbjct 2589 HDAKFGFTPVNNPSCPIVVGV--SDEARTVPGIPAGVY--LAGKTLVFAINTIFGTSGLC 2644 Query 2868 YTPSKLIEYSDFATSACVLAAECTIFKDAMGKPVPYCYDTNLLEGSISYSELRPDTRYVL 2927 + S + + AC+ + CT +G YCY L+EG+ YSEL P + Y + Sbjct 2645 FDASGVAD-----KGACIFNSACTTLS-GLGGTAVYCYKNGLVEGAKLYSELAPHSYYKM 2698 Query 2928 MDGSIIQFPNTYLEG-SVRVVTTFDAEYCRHGTCERSEVGVCLSTSGRWVLNNEHYRALP 2986 +DG+ + P G +R + T YCR G C +S GVC +V N E Sbjct 2699 VDGNAVSLPEIISRGFGIRTIRTKAMTYCRVGQCVQSAEGVCFGADRFFVYNAESGSDF- 2757 Query 2987 GVFCGVDAMNLIANIFTPLVQPVGALDVSASVVAGGIIAILVTCAAYYFMKFRRAFGEYN 3046 CG L+ N+ + + V +S ++ IIA + + F KF+R FG+ + Sbjct 2758 --VCGTGLFTLLMNVISVFSKTVPVTVLSGQILFNCIIAFVAVAVCFLFTKFKRMFGDMS 2815 Query 3047 -HVVAANALLFLMSFTILCLAPAYSFLPGVYSIFYLYLTFYF--TNDVSFLA--HLQWFA 3101 V A L + + + L Y T YF T V ++ HL + Sbjct 2816 VGVFTVGACTLLNNVSYIVTQNTLGMLG--------YATLYFLCTKGVRYMWIWHLGFLI 2867 Query 3102 MFSPIVPFWITAIYVFCISLKHFHWFFSNYLKKRV---MFNGVTF-STFEEAALCTFLLN 3157 + I P+W+ +Y F + F N K +V +F G F +FE AA TF+L+ Sbjct 2868 SYILIAPWWVLMVYAFSAIFE----FMPNLFKLKVSTQLFEGDKFVGSFENAAAGTFVLD 2923 Query 3158 KEMYLRLRSETLLPLTQYNRYLALYNKYKYFSGALDTTSYREAACCHLAKALNDFSNSGA 3217 Y RL + + + +Y + YNKYKY+SG+ YR A HLAKA+ D++++ Sbjct 2924 MHAYERLANS--ISTEKLRQYASTYNKYKYYSGSASEADYRLACFAHLAKAMMDYASNHN 2981 Query 3218 DVLYQPPQTSITSAVLQSGFRKMAFPSGKVEGCMVQVTCGTTTLNGLWLDDTVYCPRHVV 3277 D LY PP S S LQ+G RKMA PSG VE C+V+V G LNGLWL D V CPRHV+ Sbjct 2982 DTLYTPPTVSYNST-LQAGLRKMAQPSGVVEKCIVRVCYGNMALNGLWLGDIVMCPRHVI 3040 Query 3278 CTAEDMLNPNYDDLLIRKSNHSFLVQAGNVQLRVIGHSMQNCLLRLKVDTSNPKTPKYKF 3337 ++ +YD L H+F + +GNV L V+ +M+ LL++KV+ +N TPKY + Sbjct 3041 ASSTTS-TIDYDYALSVLRLHNFSISSGNVFLGVVSATMRGALLQIKVNQNNVHTPKYTY 3099 Query 3338 VRIQPGQTFSVLACYNGSPSGVYQCAMRPNHTIKGSFLNGSCGSVGFNIDYDCVSFCYMH 3397 ++PG++F++LACY+G+ +GVY MR N+TI+GSF+NG+CGS G+NI+ V FCY+H Sbjct 3100 RTVRPGESFNILACYDGAAAGVYGVNMRSNYTIRGSFINGACGSPGYNINNGTVEFCYLH 3159 Query 3398 HMELPTGVHAGTDLEGKFYGPFVDRQTAQAAGTDTTITLNVLAWLYAAVINGDRWFLNRF 3457 +EL +G H G+DL+G YG + D+ T Q G + T NVLA+LYAA+ING W+L+ Sbjct 3160 QLELGSGCHVGSDLDGVMYGGYEDQPTLQVEGASSLFTENVLAFLYAALINGSTWWLSSS 3219 Query 3458 TTTLNDFNLVAMKYNYEPLTQDHVDILGPLSAQTGIAVLDMCAALKELLQNGMNGRTILG 3517 ++ FN A+ T + D L+A+TG+ V + A+++ L +N G+ ILG Sbjct 3220 RIAVDRFNEWAVHNGMT--TVGNTDCFSILAAKTGVDVQRLLASIQSLHKN-FGGKQILG 3276 Query 3518 STILEDEFTPFDVVRQCSGVTFQGKFKKIVKGTHHWML----LTFLTSLLILVQSTQWSL 3573 T L DEFT +VVRQ GV QG + + + + +L LTF S L+ ++ Sbjct 3277 HTSLTDEFTTGEVVRQMYGVNLQGGY--VSRACRNVLLVGSFLTFFWSELV-----SYTK 3329 Query 3574 FFFVYENAFLPFALGIMAVAACAMLLVKHKHAFLCLFLLPSLATVAYFNMVYMPASWVMR 3633 FF+V P + +++ M +KHK F +FL+P+L + N+ + Sbjct 3330 FFWVNPGYVTPMFACLSLLSSLLMFTLKHKTLFFQVFLIPALIVTSCINLAF-------D 3382 Query 3634 IMTWLELAD-----TSLSGYRLKDCVMYASALVLLILMTART--VYDDAARRVWTLMNVI 3686 + + LA+ SL G+ + V V+ IL T ++ A V ++ ++ Sbjct 3383 VEVYNYLAEHFDYHVSLMGFNAQGLVNIFVCFVVTILHGTYTWRFFNTPASSVTYVVALL 3442 Query 3687 TLVYKVYYGNS-LDQAISMWALVISVTSNYSGVVTTIMFLARAIVFVCVEYYPLLFITGN 3745 T Y +Y + L A++++A SVT N+ V + + + V++ + + + I G+ Sbjct 3443 TAAYNYFYASDILSCAMTLFA---SVTGNW--FVGAVCY--KVAVYMALRFPTFVAIFGD 3495 Query 3746 TLQCIMLVYCFLGYCCCCYFGLFCLLNRYFRLTLGVYDYLVSTQEFRYMNSQGLLPPKSS 3805 ++ +M Y LGY CC++G+ NR+F++++GVYDY VS EF+YM + GL P + Sbjct 3496 -IKSVMFCYLVLGYFTCCFYGILYWFNRFFKVSVGVYDYTVSAAEFKYMVANGLRAPTGT 3554 Query 3806 IDAFKLNIKLLGIGGKPCIKVATVQSKMSDVKCTSVVLLSVLQQLRVESSSKLWAQCVQL 3865 +D+ L+ KL+GIGG+ IK+++VQSK++D+KC++VVLL L + V ++S WA CV L Sbjct 3555 LDSLLLSAKLIGIGGERNIKISSVQSKLTDIKCSNVVLLGCLSSMNVSANSTEWAYCVDL 3614 Query 3866 HNDILLAKDTTEAFEKMVSLLSVLLSMQGAVDINKLCEEMLDNRATLQAIASEFSSLPSY 3925 HN I L D +A E +++LL+ LS A ++ L E ++ + LQ++AS + LPSY Sbjct 3615 HNKINLCNDPEKAQEMLLALLAFFLSKNSAFGLDDLLESYFNDNSMLQSVASTYVGLPSY 3674 Query 3926 AAYATAQEAYEQAVSNGDSEVVLKKLKKSLNVAKSEFDHDAAMQRKLEKMADQAMTQMYK 3985 Y A++ YE AV+NG ++K+L+ ++NVAKSEFD +A+ QRKL++MA+QA QMYK Sbjct 3675 VIYENARQQYEDAVNNGSPPQLVKQLRHAMNVAKSEFDREASTQRKLDRMAEQAAAQMYK 3734 Query 3986 QARSEDKRAKVTSAMQTMLFTMLRKLDNDALNNIINNARDGCVPLNIIPLTTAAKLMVVV 4045 +AR+ ++++KV SAM ++LF MLR+LD +++ I+N A+DG VPL++IP +A KL +V Sbjct 3735 EARAVNRKSKVVSAMHSLLFGMLRRLDMSSVDTILNLAKDGVVPLSVIPAVSATKLNIVT 3794 Query 4046 PDYGTYKNTCDGNTFTYASALWEIQQVVDADSKIVQLSEINMDNSPNLAWPLIVTALRAN 4105 D +Y YA +W I + D D K+V + E+ N+ +L+WPL++ R Sbjct 3795 SDIDSYNRIQREGCVHYAGTIWNIIDIKDNDGKVVHVKEVTAQNAESLSWPLVLGCER-- 3852 Query 4106 SAVKLQNNELSPVALRQMSCAAGTTQTACTDDNALAYYNNAKGGRFVLALLSDHQDLKWA 4165 VKLQNNE+ P L+Q S A A YNN G F+ A +SD DL+ Sbjct 3853 -IVKLQNNEIIPGKLKQRSIKAEGDGIV---GEGKALYNNEGGRTFMYAFISDKPDLRVV 3908 Query 4166 RFPKSDGTGTIYTELEPPCRFVTDTPKGPKVKYLYFIKGLNNLNRGMVLGSLAATVRLQA 4225 ++ G TI ELEPP +F+ D+P G ++KYLYF++ LN L RG VLG + ATVRLQA Sbjct 3909 KWEFDGGCNTI--ELEPPRKFLVDSPNGAQIKYLYFVRNLNTLRRGAVLGYIGATVRLQA 3966 Query 4226 GNATEVPANSTVLSFCAFAVDPAKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPEA 4285 G TE NS++L+ CAFAVDPAK Y D + SG +P+ NCVKML +G GQA+T EA Sbjct 3967 GKQTEQAINSSLLTLCAFAVDPAKTYIDAVKSGHKPVGNCVKMLANGSGNGQAVTNGVEA 4026 Query 4286 NMDQESFGGASCCLYCRCHIDHPNPKGFCDLKGKYVQIPTTCANDPVGFTLRNTVCTVCG 4345 + +Q+S+GGAS CLYCR H++HP+ GFC LKGKYVQ+P DP+ F L N VC VCG Sbjct 4027 STNQDSYGGASVCLYCRAHVEHPSMDGFCRLKGKYVQVPLGTV-DPIRFVLENDVCKVCG 4085 Query 4346 MWKGYGCSCDQLREPMMQSADASTFLNGFA 4375 W GC+CD+ +MQS D + +LN + Sbjct 4086 CWLSNGCTCDR---SIMQSTDMA-YLNEYG 4111 Range 2: 1317 to 1589 Score:81.3 bits(199), Expect:2e-13, Method:Compositional matrix adjust., Identities:83/281(30%), Positives:132/281(46%), Gaps:28/281(9%) Query 1030 IVNAANTHLKHGGGVAGALNKATNGAMQNESDEYIRQNGPLTVGGSCLLSGHNLAEKCLH 1089 +VNAAN L HGGG+A A++ T G +Q S++YI+ +GP+ VG +L L K + Sbjct 1317 VVNAANEKLSHGGGIAKAIDVYTKGMLQKCSNDYIKAHGPIKVGRGVMLEA--LGLKVFN 1374 Query 1090 VVGPNLNAGEDVQLLKRAYEN-FNSQDVLLAPLLSAGIFGAKPLQSLKMCVEIV--RTQV 1146 VVGP +LL +AY++ F + V L PL+S GIF +SL + V R Sbjct 1375 VVGPR-KGKHAPELLVKAYKSVFANSGVALTPLISVGIFSVPLEESLSAFLACVGDRHCK 1433 Query 1147 YLAVNDKSLYDQIVLDYLDSLKPKVESPNKEEEPKLEEPKAVQPVAEKPV--DVKP-KIK 1203 DK + ++ Y+D L + + ++E VQ V++KPV + +P +I+ Sbjct 1434 CFCYGDKE--REAIIKYMDGLVDAIFKEALVDTTPVQED--VQQVSQKPVLPNFEPFRIE 1489 Query 1204 A------CIDEVTTTLEETKFL--TNKLLLFADINGKLYQDSQNMLRGEDMSFLEKDAPY 1255 C E +L K + TN L F + GK D + E ++ +K Sbjct 1490 GAHAFYECNPEGLMSLGADKLVLFTNSNLDFCSV-GKCLNDVTSGALLEAINVFKKSNKT 1548 Query 1256 I-VGDVITSG-----DITCVIIPAKKSGGTTEMLARALKEV 1290 + G+ +T IT V++P + ARA+ +V Sbjct 1549 VPAGNCVTLDCANMISITMVVLPFDGDANYDKNYARAVVKV 1589 >RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Non-structural protein 1; Short=nsp1; AltName: Full=p9; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p87; Contains: RecName: Full=Papain-like protease nsp3; AltName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=PL1-PRO/PL2-PRO; AltName: Full=PLP1/PLP2; AltName: Full=Papain-like proteinase; Short=PL-PRO; AltName: Full=p195; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; AltName: Full=Peptide HD2; Contains: RecName: Full=3C-like proteinase nsp5; Short=3CL-PRO; Short=3CLp; AltName: Full=M-PRO; AltName: Full=nsp5; AltName: Full=p34; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; AltName: Full=p5; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; AltName: Full=p23; Contains: RecName: Full=Viral protein genome-linked nsp9; AltName: Full=Non-structural protein 9; Short=nsp9; AltName: Full=RNA-capping enzyme subunit nsp9; AltName: Full=p12; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; AltName: Full=p14; Contains: RecName: Full=RNA-directed RNA polymerase nsp12; Short=Pol; Short=RdRp; AltName: Full=nsp12; AltName: Full=p100; Contains: RecName: Full=Helicase nsp13; Short=Hel; AltName: Full=nsp13; AltName: Full=p66; AltName: Full=p66-HEL; Contains: RecName: Full=Guanine-N7 methyltransferase nsp14; AltName: Full=Non-structural protein 14; Short=nsp14; AltName: Full=Proofreading exoribonuclease nsp14; Short=ExoN; Contains: RecName: Full=Uridylate-specific endoribonuclease nsp15; AltName: Full=NendoU; AltName: Full=Non-structural protein 15; Short=nsp15; Contains: RecName: Full=2'-O-methyltransferase nsp16; AltName: Full=Non-structural protein 16; Short=nsp16 [Porcine epidemic diarrhea virus CV777] Sequence ID: P0C6Y4.1 Length: 6781 Range 1: 2037 to 4108 Score:1193 bits(3087), Expect:0.0, Method:Compositional matrix adjust., Identities:758/2187(35%), Positives:1150/2187(52%), Gaps:145/2187(6%) Query 2216 YVTAVLGVCLSSLGVPSYCDGVRELYINSSNVTTMDFCQGYFPCSVCLSGLDSLDSYPAL 2275 Y + + + +G P CD V Y NSS ++C C VCL G L + Sbjct 2037 YALLFMTIRFTPIGSP-VCDDVVAGYANSS-FDKNEYCNSVI-CKVCLYGYQELSDFSHT 2093 Query 2276 ETIQVTISSYKLDLTFLGLAAEWLLAYMLFTKFFYLLGLSAIMQAF-FGYFASH--FISN 2332 + + L +G + Y+ F F + + AI F F Y S F+ Sbjct 2094 QVVW-----QHLRDPLIGNVMPFF--YLAFLAIFGGVYVKAITLYFIFQYLNSLGVFLGL 2146 Query 2333 SWLMWFIISIVQMAPVSAMVRMYIFFASFYYVWKSYVHIMDGCTSSTCMMCYKRNRATRV 2392 +WF+ Q+ P + F V H+ GC ++C+ C K R RV Sbjct 2147 QQSIWFL----QLVPFDVFGDEIVVFFIVTRVLMFIKHVCLGCDKASCVACSKSARLKRV 2202 Query 2393 ECTTIVNGVKRSFYVYANGGRGFCKAHNWNCLNCDTFCAGSTFISDEVARDLSLQFKRPI 2452 TI G +SFYV+ANGG FCK HN+ CLNCD++ G TFI+D +A ++ K + Sbjct 2203 PVQTIFQGTSKSFYVHANGGSKFCKKHNFFCLNCDSYGPGCTFINDVIATEVGNVVKLNV 2262 Query 2453 NPTDQSAYVVDSVTVKNGALHLYFDKAGQKTYERHPLSHFVNLDNLRANNTKGSLPINVI 2512 PT + ++D V NG +LY K S + + L+ S+ + I Sbjct 2263 QPTGPATILIDKVEFSNGFYYLYSGDTFWKYNFDITDSKYTCKEALK----NCSIITDFI 2318 Query 2513 VFDGKSKCEESAAKSASVYYSQLMCQPILLLDQALVSDVGDSTEVSVKMFDAYVDTFSAT 2572 VF+ + K+A VY+SQ++C+P+ L+D AL++ + S + + A+V S + Sbjct 2319 VFNNNGS-NVNQVKNACVYFSQMLCKPVKLVDSALLASL--SVDFGASLHSAFVSVLSNS 2375 Query 2573 FSVPMEKLKALVATAHSELAKGVALDGV-LSTFVSAARQGVVDTDVDTKDVIECLKLSHH 2631 F + + + + D V L TF +A + +H Sbjct 2376 FGKDLSSCNDM-----QDCKSTLGFDDVPLDTFNAAVAE------------------AHR 2412 Query 2632 SDIEVTGDSCNNFMLTYNKVENMTP-RDLGACIDCNARHINAQVAKSHNVSLVWNVKDYM 2690 D+ +T S NNF +Y K E P D+ C+ A+ +N V ++ +VW V+D++ Sbjct 2413 YDVLLTDMSFNNFTTSYAKPEEKFPVHDIATCMRVGAKIVNHNVLVKDSIPVVWLVRDFI 2472 Query 2691 SLSEQLRKQIRSAAKKNNIPFRLTCATTRQVVNVITTKISLKGGKVVSTWFKLLLKVTLL 2750 +LSE+ RK I K I F LT R + T I+ K G + ++ K+ L Sbjct 2473 ALSEETRKYIIRTTKVKGITFMLTFNDCRMHTTIPTVCIANKKGAGLPSFSKVKKFFWFL 2532 Query 2751 C--VLAALFCYVIMPVHSLSVHDGYTNEIIGYKAIQDGVTRDIVSTDDCFANKHAGFDSW 2808 C ++AA F + + D + +K I+ G + + C N FD W Sbjct 2533 CLFIVAAFFALSFLDFSTQVSSDSDYD----FKYIESGQLKTFDNPLSCVHNVFINFDQW 2588 Query 2809 FSQRGG-SYRNDKNCPVVAAIITREIGFIVPGLPGTVLRALNGDFLHFLPRVFSAVGNIC 2867 + G + N+ +CP+V + + VPG+P V L G L F +C Sbjct 2589 HDAKFGFTPVNNPSCPIVVGV--SDEARTVPGIPAGVY--LAGKTLVFAINTIFGTSGLC 2644 Query 2868 YTPSKLIEYSDFATSACVLAAECTIFKDAMGKPVPYCYDTNLLEGSISYSELRPDTRYVL 2927 + S + + AC+ + CT +G YCY L+EG+ YSEL P + Y + Sbjct 2645 FDASGVAD-----KGACIFNSACTTLS-GLGGTAVYCYKNGLVEGAKLYSELAPHSYYKM 2698 Query 2928 MDGSIIQFPNTYLEG-SVRVVTTFDAEYCRHGTCERSEVGVCLSTSGRWVLNNEHYRALP 2986 +DG+ + P G +R + T YCR G C +S GVC +V N E + Sbjct 2699 VDGNAVSLPEIISRGFGIRTIRTKAMTYCRVGQCVQSAEGVCFGADRFFVYNAE---SGS 2755 Query 2987 GVFCGVDAMNLIANIFTPLVQPVGALDVSASVVAGGIIAILVTCAAYYFMKFRRAFGEYN 3046 CG L+ N+ + + V +S ++ IIA + + F KF+R FG+ + Sbjct 2756 DFVCGTGLFTLLMNVISVFSKTVPVTVLSGQILFNCIIAFVAVAVCFLFTKFKRMFGDMS 2815 Query 3047 -HVVAANALLFLMSFTILCLAPAYSFLPGVYSIFYLYLTFYF--TNDVSFLA--HLQWFA 3101 V A L + + + L Y T YF T V ++ HL + Sbjct 2816 VGVFTVGACTLLNNVSYIVTQNTLGMLG--------YATLYFLCTKGVRYMWIWHLGFLI 2867 Query 3102 MFSPIVPFWITAIYVFCISLKHFHWFFSNYLKKRV---MFNGVTF-STFEEAALCTFLLN 3157 + I P+W+ +Y F + F N K +V +F G F +FE AA TF+L+ Sbjct 2868 SYILIAPWWVLMVYAFSAIFE----FMPNLFKLKVSTQLFEGDKFVGSFENAAAGTFVLD 2923 Query 3158 KEMYLRLRSETLLPLTQYNRYLALYNKYKYFSGALDTTSYREAACCHLAKALNDFSNSGA 3217 Y RL + + + +Y + YNKYKY+SG+ YR A HLAKA+ D++++ Sbjct 2924 MHAYERLANS--ISTEKLRQYASTYNKYKYYSGSASEADYRLACFAHLAKAMMDYASNHN 2981 Query 3218 DVLYQPPQTSITSAVLQSGFRKMAFPSGKVEGCMVQVTCGTTTLNGLWLDDTVYCPRHVV 3277 D LY PP S S LQ+G RKMA PSG VE C+V+V G LNGLWL D V CPRHV+ Sbjct 2982 DTLYTPPTVSYNST-LQAGLRKMAQPSGVVEKCIVRVCYGNMALNGLWLGDIVMCPRHVI 3040 Query 3278 CTAEDMLNPNYDDLLIRKSNHSFLVQAGNVQLRVIGHSMQNCLLRLKVDTSNPKTPKYKF 3337 ++ +YD L H+F + +GNV L V+ +M+ LL++KV+ +N TPKY + Sbjct 3041 ASSTTS-TIDYDYALSVLRLHNFSISSGNVFLGVVSATMRGALLQIKVNQNNVHTPKYTY 3099 Query 3338 VRIQPGQTFSVLACYNGSPSGVYQCAMRPNHTIKGSFLNGSCGSVGFNIDYDCVSFCYMH 3397 ++PG++F++LACY+G+ +GVY MR N+TI+GSF+NG+CGS G+NI+ V FCY+H Sbjct 3100 RTVRPGESFNILACYDGAAAGVYGVNMRSNYTIRGSFINGACGSPGYNINNGTVEFCYLH 3159 Query 3398 HMELPTGVHAGTDLEGKFYGPFVDRQTAQAAGTDTTITLNVLAWLYAAVINGDRWFLNRF 3457 +EL +G H G+DL+G YG + D+ T Q G + T NVLA+LYAA+ING W+L+ Sbjct 3160 QLELGSGCHVGSDLDGVMYGGYEDQPTLQVEGASSLFTENVLAFLYAALINGSTWWLSSS 3219 Query 3458 TTTLNDFNLVAMKYNYEPLTQDHVDILGPLSAQTGIAVLDMCAALKELLQNGMNGRTILG 3517 ++ FN A+ T + D L+A+TG+ V + A+++ L +N G+ ILG Sbjct 3220 RIAVDRFNEWAVHNGMT--TVGNTDCFSILAAKTGVDVQRLLASIQSLHKN-FGGKQILG 3276 Query 3518 STILEDEFTPFDVVRQCSGVTFQGKFKKIVKGTHHWML----LTFLTSLLILVQSTQWSL 3573 T L DEFT +VVRQ GV QG + + + + +L LTF S L+ ++ Sbjct 3277 HTSLTDEFTTGEVVRQMYGVNLQGGY--VSRACRNVLLVGSFLTFFWSELV-----SYTK 3329 Query 3574 FFFVYENAFLPFALGIMAVAACAMLLVKHKHAFLCLFLLPSLATVAYFNMVYMPASWVMR 3633 FF+V P + +++ M +KHK F +FL+P+L + N+ + Sbjct 3330 FFWVNPGYVTPMFACLSLLSSLLMFTLKHKTLFFQVFLIPALIVTSCINLAF-------D 3382 Query 3634 IMTWLELAD-----TSLSGYRLKDCVMYASALVLLILMTART--VYDDAARRVWTLMNVI 3686 + + LA+ SL G+ + V V+ IL T ++ A V ++ ++ Sbjct 3383 VEVYNYLAEHFDYHVSLMGFNAQGLVNIFVCFVVTILHGTYTWRFFNTPASSVTYVVALL 3442 Query 3687 TLVYKVYYGNS-LDQAISMWALVISVTSNYSGVVTTIMFLARAIVFVCVEYYPLLFITGN 3745 T Y +Y + L A++++A SVT N+ V + + + V++ + + + I G+ Sbjct 3443 TAAYNYFYASDILSCAMTLFA---SVTGNW--FVGAVCY--KVAVYMALRFPTFVAIFGD 3495 Query 3746 TLQCIMLVYCFLGYCCCCYFGLFCLLNRYFRLTLGVYDYLVSTQEFRYMNSQGLLPPKSS 3805 ++ +M Y LGY CC++G+ NR+F++++GVYDY VS EF+YM + GL P + Sbjct 3496 -IKSVMFCYLVLGYFTCCFYGILYWFNRFFKVSVGVYDYTVSAAEFKYMVANGLRAPTGT 3554 Query 3806 IDAFKLNIKLLGIGGKPCIKVATVQSKMSDVKCTSVVLLSVLQQLRVESSSKLWAQCVQL 3865 +D+ L+ KL+GIGG+ IK+++VQSK++D+KC++VVLL L + V ++S WA CV L Sbjct 3555 LDSLLLSAKLIGIGGERNIKISSVQSKLTDIKCSNVVLLGCLSSMNVSANSTEWAYCVDL 3614 Query 3866 HNDILLAKDTTEAFEKMVSLLSVLLSMQGAVDINKLCEEMLDNRATLQAIASEFSSLPSY 3925 HN I L D +A E +++LL+ LS A ++ L E ++ + LQ++AS + LPSY Sbjct 3615 HNKINLCNDPEKAQEMLLALLAFFLSKNSAFGLDDLLESYFNDNSMLQSVASTYVGLPSY 3674 Query 3926 AAYATAQEAYEQAVSNGDSEVVLKKLKKSLNVAKSEFDHDAAMQRKLEKMADQAMTQMYK 3985 Y A++ YE AV+NG ++K+L+ ++NVAKSEFD +A+ QRKL++MA+QA QMYK Sbjct 3675 VIYENARQQYEDAVNNGSPPQLVKQLRHAMNVAKSEFDREASTQRKLDRMAEQAAAQMYK 3734 Query 3986 QARSEDKRAKVTSAMQTMLFTMLRKLDNDALNNIINNARDGCVPLNIIPLTTAAKLMVVV 4045 +AR+ ++++KV SAM ++LF MLR+LD +++ I+N A+DG VPL++IP +A KL +V Sbjct 3735 EARAVNRKSKVVSAMHSLLFGMLRRLDMSSVDTILNLAKDGVVPLSVIPAVSATKLNIVT 3794 Query 4046 PDYGTYKNTCDGNTFTYASALWEIQQVVDADSKIVQLSEINMDNSPNLAWPLIVTALRAN 4105 D +Y YA +W I + D D K+V + E+ N+ +L+WPL++ R Sbjct 3795 SDIDSYNRIQREGCVHYAGTIWNIIDIKDNDGKVVHVKEVTAQNAESLSWPLVLGCER-- 3852 Query 4106 SAVKLQNNELSPVALRQMSCAAGTTQTACTDDNALAYYNNAKGGRFVLALLSDHQDLKWA 4165 VKLQNNE+ P L+Q S A A YNN G F+ A +SD DL+ Sbjct 3853 -IVKLQNNEIIPGKLKQRSIKAEGDGIV---GEGKALYNNEGGRTFMYAFISDKPDLRVV 3908 Query 4166 RFPKSDGTGTIYTELEPPCRFVTDTPKGPKVKYLYFIKGLNNLNRGMVLGSLAATVRLQA 4225 ++ G TI ELEPP +F+ D+P G ++KYLYF++ LN L RG VLG + ATVRLQA Sbjct 3909 KWEFDGGCNTI--ELEPPRKFLVDSPNGAQIKYLYFVRNLNTLRRGAVLGYIGATVRLQA 3966 Query 4226 GNATEVPANSTVLSFCAFAVDPAKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPEA 4285 G TE NS++L+ CAFAVDPAK Y D + SG +P+ NCVKML +G GQA+T EA Sbjct 3967 GKQTEQAINSSLLTLCAFAVDPAKTYIDAVKSGHKPVGNCVKMLANGSGNGQAVTNGVEA 4026 Query 4286 NMDQESFGGASCCLYCRCHIDHPNPKGFCDLKGKYVQIPTTCANDPVGFTLRNTVCTVCG 4345 + +Q+S+GGAS CLYCR H++HP+ GFC LKGKYVQ+P DP+ F L N VC VCG Sbjct 4027 STNQDSYGGASVCLYCRAHVEHPSMDGFCRLKGKYVQVPLGTV-DPIRFVLENDVCKVCG 4085 Query 4346 MWKGYGCSCDQLREPMMQSADASTFLN 4372 W GC+CD+ +MQS D + +LN Sbjct 4086 CWLSNGCTCDR---SIMQSTDMA-YLN 4108 Range 2: 1317 to 1589 Score:81.6 bits(200), Expect:2e-13, Method:Compositional matrix adjust., Identities:83/281(30%), Positives:132/281(46%), Gaps:28/281(9%) Query 1030 IVNAANTHLKHGGGVAGALNKATNGAMQNESDEYIRQNGPLTVGGSCLLSGHNLAEKCLH 1089 +VNAAN L HGGG+A A++ T G +Q S++YI+ +GP+ VG +L L K + Sbjct 1317 VVNAANEKLSHGGGIAKAIDVYTKGMLQKCSNDYIKAHGPIKVGRGVMLEA--LGLKVFN 1374 Query 1090 VVGPNLNAGEDVQLLKRAYEN-FNSQDVLLAPLLSAGIFGAKPLQSLKMCVEIV--RTQV 1146 VVGP +LL +AY++ F + V L PL+S GIF +SL + V R Sbjct 1375 VVGPR-KGKHAPELLVKAYKSVFANSGVALTPLISVGIFSVPLEESLSAFLACVGDRHCK 1433 Query 1147 YLAVNDKSLYDQIVLDYLDSLKPKVESPNKEEEPKLEEPKAVQPVAEKPV--DVKP-KIK 1203 DK + ++ Y+D L + + ++E VQ V++KPV + +P +I+ Sbjct 1434 CFCYGDKE--REAIIKYMDGLVDAIFKEALVDTTPVQED--VQQVSQKPVLPNFEPFRIE 1489 Query 1204 A------CIDEVTTTLEETKFL--TNKLLLFADINGKLYQDSQNMLRGEDMSFLEKDAPY 1255 C E +L K + TN L F + GK D + E ++ +K Sbjct 1490 GAHAFYECNPEGLMSLGADKLVLFTNSNLDFCSV-GKCLNDVTSGALLEAINVFKKSNKT 1548 Query 1256 I-VGDVITSG-----DITCVIIPAKKSGGTTEMLARALKEV 1290 + G+ +T IT V++P + ARA+ +V Sbjct 1549 VPAGNCVTLDCANMISITMVVLPFDGDANYDKNYARAVVKV 1589 >RecName: Full=Replicase polyprotein 1a; Short=pp1a; AltName: Full=ORF1a polyprotein; Contains: RecName: Full=Non-structural protein 1; Short=nsp1; AltName: Full=p9; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p87; Contains: RecName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=PL1-PRO/PL2-PRO; AltName: Full=PLP1/PLP2; AltName: Full=Papain-like proteinases 1/2; AltName: Full=p195; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; AltName: Full=Peptide HD2; Contains: RecName: Full=3C-like proteinase; Short=3CL-PRO; Short=3CLp; AltName: Full=M-PRO; AltName: Full=nsp5; AltName: Full=p34; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; AltName: Full=p5; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; AltName: Full=p23; Contains: RecName: Full=Non-structural protein 9; Short=nsp9; AltName: Full=p12; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; AltName: Full=p14; Contains: RecName: Full=Non-structural protein 11; Short=nsp11 [Human coronavirus NL63] Sequence ID: P0C6U6.1 Length: 4060 Range 1: 2060 to 4051 Score:1179 bits(3051), Expect:0.0, Method:Compositional matrix adjust., Identities:747/2112(35%), Positives:1128/2112(53%), Gaps:158/2112(7%) Query 2299 LLAYMLFTKFFYLLGLSAIMQAFFGYFASHFISNSWLMWFIISIVQMAPVSAMVRMYIFF 2358 L+ ++F + GL + F F S F+ WF+ P + F Sbjct 2060 LVILLIFGNMYLRFGLLYFVAQFISTFGS-FLGFHQKQWFL----HFVPFDVLCNE--FL 2112 Query 2359 ASFYYVWKSYV---HIMDGCTSSTCMMCYKRNRATRVECTTIVNGVKRSFYVYANGGRGF 2415 A+F V K + HI+ GC ++ C+ C K R RV TI+NG+ +SFYV ANGG F Sbjct 2113 ATFI-VCKIVLFVRHIIVGCNNADCVACSKSARLKRVPLQTIINGMHKSFYVNANGGTCF 2171 Query 2416 CKAHNWNCLNCDTFCAGSTFISDEVARDLSLQFKRPINPTDQSAYVVDSVTVKNGALHLY 2475 C HN+ C+NCD+F G+TFI+ ++AR+L K + PT + ++D V NG LY Sbjct 2172 CNKHNFFCVNCDSFGPGNTFINGDIARELGNVVKTAVQPTAPAYVIIDKVDFVNGFYRLY 2231 Query 2476 ---------FDKAGQKTYERHPLSHFVNLDNLRANNTKGSLPINVIVFDGKSKCEESAAK 2526 FD K + L + L+N N GS N+ + K Sbjct 2232 SGDTFWRYDFDITESKYSCKEVLKNCNVLENFIVYNNSGS---NI-----------TQIK 2277 Query 2527 SASVYYSQLMCQPILLLDQALVSDVGDSTEVSVKMFDAYVDTFSATFSVPMEKLKALVAT 2586 +A VY+SQL+C+PI L++ L+S + S + + + AYVD +F ++L A ++ Sbjct 2278 NACVYFSQLLCEPIKLVNSELLSTL--SVDFNGVLHKAYVDVLCNSF---FKELTANMSM 2332 Query 2587 AHSELAKGVALDGVLSTFVSAARQGVVDTDVDTKDVIECLKLSHHSDIEVTGDSCNNFML 2646 A + G+ V D + + +H D+ ++ S NNF + Sbjct 2333 AECKATLGLT--------------------VSDDDFVSAVANAHRYDVLLSDLSFNNFFI 2372 Query 2647 TYNKVEN-MTPRDLGACIDCNARHINAQVAKSHNVSLVWNVKDYMSLSEQLRKQIRSAAK 2705 +Y K E+ ++ D+ C+ ++ +N V ++ +VW VKD+ +LS++ +K + K Sbjct 2373 SYAKPEDKLSVYDIACCMRAGSKVVNHNVLIKESIPIVWGVKDFNTLSQEGKKYLVKTTK 2432 Query 2706 KNNIPFRLTCATTRQVVNVITTKISLKGGKVVSTWFKLLLKVTLLCVLAALFCYVIMPVH 2765 + F LT + + V T I K G + L V L V + I Sbjct 2433 AKGLTFLLTFNDNQAITQVPATSIVAKQGAGFKRTYNFLWYVCLFVVALFIGVSFIDYTT 2492 Query 2766 SLSVHDGYTNEIIGYKAIQDGVTRDIVSTDDCFANKHAGFDSWFSQRGGSYR-NDKNCPV 2824 +++ GY +K I++G + + C N F+ W + G N CP+ Sbjct 2493 TVTSFHGYD-----FKYIENGQLKVFEAPLHCVRNVFDNFNQWHEAKFGVVTTNSDKCPI 2547 Query 2825 VAAIITREIGFIVPGLPGTVLRALNGDFLHFLPRVFSAVGN--ICYTPSKLIEYSDFATS 2882 V + R +VPG+P V L G L F + +A GN +CY ++ TS Sbjct 2548 VVGVSERIN--VVPGVPTNVY--LVGKTLVFTLQ--AAFGNTGVCY------DFDGVTTS 2595 Query 2883 -ACVLAAECTIFKDAMGKPVPYCYDTNLLEGSISYSELRPDTRYVLMDGSIIQFPNTYLE 2941 C+ + CT + G V YCY+T+L+EGS YS L+P+ Y + ++FP Sbjct 2596 DKCIFNSACTRLEGLGGDNV-YCYNTDLIEGSKPYSTLQPNAYYKYDAKNYVRFPEILAR 2654 Query 2942 G-SVRVVTTFDAEYCRHGTCERSEVGVCLSTSGRWVLNNEHYRALPGVFCGVDAMNLIAN 3000 G +R + T YCR G C S GVC +W +N+ R G CG ++L+ N Sbjct 2655 GFGLRTIRTLATRYCRVGECRDSHKGVCFGFD-KWYVNDG--RVDDGYICGDGLIDLLVN 2711 Query 3001 IFTPLVQPVGALDVSASVVAGGIIAILVTCAAYYFMKFRRAFGEYNHVVAANALLFLMSF 3060 + + + +S ++ + A +T + KF+R FG+ ++ V F Sbjct 2712 VLSIFSSSFSVVAMSGHMLFNFLFAAFITFLCFLVTKFKRVFGDLSYGV----------F 2761 Query 3061 TILC--LAPAYSFLPG---VYSIFYLYLTFYFTNDV--SFLAHLQWFAMFSPIVPFWITA 3113 T++C L S++ + + Y L F FT V +++ H+ + + ++P+W+ Sbjct 2762 TVVCATLINNISYVVTQNLFFMLLYAILYFVFTRTVRYAWIWHIAYIVAYFLLIPWWLLT 2821 Query 3114 IYVFCISLKHFHWFFSNYLKKRV---MFNGVTF-STFEEAALCTFLLNKEMYLRLRSETL 3169 + F L+ N K ++ +F G F TFE AA TF+L+ Y RL + T+ Sbjct 2822 WFSFAAFLE----LLPNVFKLKISTQLFEGDKFIGTFESAAAGTFVLDMRSYERLIN-TI 2876 Query 3170 LPLTQYNRYLALYNKYKYFSGALDTTSYREAACCHLAKALNDFSNSGADVLYQPPQTSIT 3229 P + Y A YNKYKY+SG+ YR A HLAKA+ D++ D+LY PP S Sbjct 2877 SP-EKLKNYAASYNKYKYYSGSASEADYRCACYAHLAKAMLDYAKDHNDMLYSPPTISYN 2935 Query 3230 SAVLQSGFRKMAFPSGKVEGCMVQVTCGTTTLNGLWLDDTVYCPRHVVCTAEDMLNPNYD 3289 S LQSG +KMA PSG VE C+V+V G+T LNG+WL DTV CPRHV+ + +L +YD Sbjct 2936 ST-LQSGLKKMAQPSGCVERCVVRVCYGSTVLNGVWLGDTVTCPRHVIAPSTTVL-IDYD 2993 Query 3290 DLLIRKSNHSFLVQAGNVQLRVIGHSMQNCLLRLKVDTSNPKTPKYKFVRIQPGQTFSVL 3349 H+F V V L V+G +M +LR+KV SN TPK+ F ++PG +F++L Sbjct 2994 HAYSTMRLHNFSVSHNGVFLGVVGVTMHGSVLRIKVSQSNVHTPKHVFKTLKPGDSFNIL 3053 Query 3350 ACYNGSPSGVYQCAMRPNHTIKGSFLNGSCGSVGFNIDYD-CVSFCYMHHMELPTGVHAG 3408 ACY G SGV+ +R N TIKGSF+NG+CGS G+N+ D V FCY+H +EL +G H G Sbjct 3054 ACYEGIASGVFGVNLRTNFTIKGSFINGACGSPGYNVRNDGTVEFCYLHQIELGSGAHVG 3113 Query 3409 TDLEGKFYGPFVDRQTAQAAGTDTTITLNVLAWLYAAVINGDRWFLNRFTTTLNDFNLVA 3468 +D G YG F D+ + Q + ++ NV+A+LYAA++NG RW+L ++ FN A Sbjct 3114 SDFTGSVYGNFDDQPSLQVESANLMLSDNVVAFLYAALLNGCRWWLCSTRVNVDGFNEWA 3173 Query 3469 MKYNYEPLTQDHVDILGPLSAQTGIAVLDMCAALKELLQNGMNGRTILGSTILEDEFTPF 3528 M Y ++ V+ L+A+TG++V + A+++ L G G+ ILG + L DEFT Sbjct 3174 MANGYTSVSS--VECYSILAAKTGVSVEQLLASIQHL-HEGFGGKNILGYSSLCDEFTLA 3230 Query 3529 DVVRQCSGVTFQGKFKKIVKGTHHWMLLTFLTSLLILVQSTQWSLFFFVYENA------- 3581 +VV+Q GV Q K++ G L + ++ W+ F +Y N Sbjct 3231 EVVKQMYGVNLQSG--KVIFGLKTMFLFSVFFTMF-------WAELF-IYTNTIWINPVI 3280 Query 3582 FLPFALGIMAVAACAMLLVKHKHAFLCLFLLPSLATVAYFNMVYMPASWVMRIMTWLELA 3641 P ++ ++ + +KHK FL +FLLP++ A +N V ++++ + Sbjct 3281 LTPIFCLLLFLSLVLTMFLKHKFLFLQVFLLPTVIATALYNCVL--DYYIVKFLADHFNY 3338 Query 3642 DTSLSGYRLKDCVMYASALVLLILMTARTVYDDAARRVWTLMNVITLVYKVYYGNSLDQA 3701 + S+ ++ V L ++ L T R + + ++I + Y +Y Sbjct 3339 NVSVLQMDVQGLVNVLVCLFVVFLHTWRFSKERFTHWFTYVCSLIAVAYTYFYSGDFLSL 3398 Query 3702 ISMWALVISVTSNYSGVVTTIMFLARAIVFVCVEYYPLLFITGNTLQCIMLVYCFLGYCC 3761 + M+ IS + Y G + + L+R IVF E +F ++ ++VY GY Sbjct 3399 LVMFLCAIS-SDWYIGAI--VFRLSRLIVFFSPES---VFSVFGDVKLTLVVYLICGYLV 3452 Query 3762 CCYFGLFCLLNRYFRLTLGVYDYLVSTQEFRYMNSQGLLPPKSSIDAFKLNIKLLGIGGK 3821 C Y+G+ NR+F+ T+GVYD+ VS EF+YM + GL P DA L+ KLLGIGG Sbjct 3453 CTYWGILYWFNRFFKCTMGVYDFKVSAAEFKYMVANGLHAPHGPFDALWLSFKLLGIGGD 3512 Query 3822 PCIKVATVQSKMSDVKCTSVVLLSVLQQLRVESSSKLWAQCVQLHNDILLAKDTTEAFEK 3881 CIK++TVQSK++D+KCT+VVLL L + + ++S WA CV LHN I L D +A Sbjct 3513 RCIKISTVQSKLTDLKCTNVVLLGCLSSMNIAANSSEWAYCVDLHNKINLCDDPEKAQSM 3572 Query 3882 MVSLLSVLLSMQGAVDINKLCEEMLDNRATLQAIASEFSSLPSYAAYATAQEAYEQAVSN 3941 +++LL+ LS ++ L + DN +TLQ++AS F S+PSY AY A++AYE A++N Sbjct 3573 LLALLAFFLSKHSDFGLDGLIDSYFDNSSTLQSVASSFVSMPSYIAYENARQAYEDAIAN 3632 Query 3942 GDSEVVLKKLKKSLNVAKSEFDHDAAMQRKLEKMADQAMTQMYKQARSEDKRAKVTSAMQ 4001 G S ++K+LK+++N+AKSEFDH+ ++Q+K+ +MA+QA TQMYK+ARS ++++KV SAM Sbjct 3633 GSSSQLIKQLKRAMNIAKSEFDHEISVQKKINRMAEQAATQMYKEARSVNRKSKVISAMH 3692 Query 4002 TMLFTMLRKLDNDALNNIINNARDGCVPLNIIPLTTAAKLMVVVPDYGTY-KNTCDGNTF 4060 ++LF MLR+LD ++ ++N ARDG VPL++IP T+A+KL +V PD +Y K CDG+ Sbjct 3693 SLLFGMLRRLDMSSVETVLNLARDGVVPLSVIPATSASKLTIVSPDLESYSKIVCDGSV- 3751 Query 4061 TYASALWEIQQVVDADSKIVQLSEINMDNSPNLAWPLIVTALRANSAVKLQNNELSPVAL 4120 YA +W + V D D + V + EI +N L WPLI+ R VKLQNNE+ P L Sbjct 3752 HYAGVVWTLNDVKDNDGRPVHVKEITKENVETLTWPLILNCER---VVKLQNNEIMPGKL 3808 Query 4121 RQMSCAAGTTQTACTDDNALAYYNNAKGGRFVLALLSDHQDLKWARFPKSDGTGTIYTEL 4180 +Q A D NAL YN G F+ A +S+ DLK+ ++ G TI EL Sbjct 3809 KQKPMKAEGDGGVLGDGNAL--YNTEGGKTFMYAYISNKADLKFVKWEYEGGCNTI--EL 3864 Query 4181 EPPCRFVTDTPKGPKVKYLYFIKGLNNLNRGMVLGSLAATVRLQAGNATEVPANSTVLSF 4240 + PCRF+ +TP GP+VKYLYF+K LN L RG VLG + AT+RLQAG TE+ NS +L+ Sbjct 3865 DSPCRFMVETPNGPQVKYLYFVKNLNTLRRGAVLGFIGATIRLQAGKQTELAVNSGLLTA 3924 Query 4241 CAFAVDPAKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPEANMDQESFGGASCCLY 4300 CAF+VDPA Y + + G +P++NC+KML G GQAIT + +AN +Q+S+GGAS CLY Sbjct 3925 CAFSVDPATTYLEAVKHGAKPVSNCIKMLSNGAGNGQAITTSVDANTNQDSYGGASICLY 3984 Query 4301 CRCHIDHPNPKGFCDLKGKYVQIPTTCANDPVGFTLRNTVCTVCGMWKGYGCSCDQLREP 4360 CR H+ HP+ G+C KGK VQ+P C DP+ F L N VC VCG W G+GC+CD+ Sbjct 3985 CRAHVPHPSMDGYCKFKGKCVQVPIGCL-DPIRFCLENNVCNVCGCWLGHGCACDR---T 4040 Query 4361 MMQSADASTFLN 4372 +QS D S +LN Sbjct 4041 TIQSVDIS-YLN 4051 Range 2: 1265 to 1434 Score:80.5 bits(197), Expect:5e-13, Method:Compositional matrix adjust., Identities:63/185(34%), Positives:89/185(48%), Gaps:19/185(10%) Query 1010 NVAIKCIDIVKEAQSAKPTVIVNAANTHLKHGGGVAGALNKATNGAMQNESDEYIRQNGP 1069 NV DI +VNAAN +L HGGGVA A++ T G +Q+ S +YI NGP Sbjct 1265 NVKFYLGDISHLVNCVSFDFVVNAANENLLHGGGVARAIDILTEGQLQSLSKDYISSNGP 1324 Query 1070 LTVGGSCLLSGHNLAEKCLHVVGPNLNAGEDVQLLKRAYENFNSQD-VLLAPLLSAGIFG 1128 L VG +L +VVGP E LL AY + ++ + L PLLS GIFG Sbjct 1325 LKVGAGVMLECEKF--NVFNVVGPRTGKHEH-SLLVEAYNSILFENGIPLMPLLSCGIFG 1381 Query 1129 AKPLQSLKM---CVEIVRTQVYLAVNDKSLYDQIVLDYLDSLKPKVESPNKEEEPKLEEP 1185 + SLK C QV++ +++ +Q VL +LD L + P +++ Sbjct 1382 VRIENSLKALFSCDINKPLQVFVYSSNE---EQAVLKFLDGL---------DLTPVIDDV 1429 Query 1186 KAVQP 1190 V+P Sbjct 1430 DVVKP 1434 >RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Non-structural protein 1; Short=nsp1; AltName: Full=p9; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p87; Contains: RecName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=PL1-PRO/PL2-PRO; AltName: Full=PLP1/PLP2; AltName: Full=Papain-like proteinases 1/2; AltName: Full=p195; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; AltName: Full=Peptide HD2; Contains: RecName: Full=3C-like proteinase; Short=3CL-PRO; Short=3CLp; AltName: Full=M-PRO; AltName: Full=nsp5; AltName: Full=p34; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; AltName: Full=p5; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; AltName: Full=p23; Contains: RecName: Full=Viral protein genome-linked nsp9; AltName: Full=Non-structural protein 9; Short=nsp9; AltName: Full=RNA-capping enzyme subunit nsp9; AltName: Full=p12; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; AltName: Full=p14; Contains: RecName: Full=RNA-directed RNA polymerase nsp12; Short=Pol; Short=RdRp; AltName: Full=nsp12; AltName: Full=p100; Contains: RecName: Full=Helicase; Short=Hel; AltName: Full=nsp13; AltName: Full=p66; AltName: Full=p66-HEL; Contains: RecName: Full=Exoribonuclease; Short=ExoN; AltName: Full=nsp14; Contains: RecName: Full=Uridylate-specific endoribonuclease; AltName: Full=NendoU; AltName: Full=nsp15; AltName: Full=p41; Contains: RecName: Full=Putative 2'-O-methyl transferase; AltName: Full=nsp16 [Human coronavirus NL63] Sequence ID: P0C6X5.1 Length: 6729 Range 1: 2060 to 4051 Score:1177 bits(3046), Expect:0.0, Method:Compositional matrix adjust., Identities:747/2112(35%), Positives:1128/2112(53%), Gaps:158/2112(7%) Query 2299 LLAYMLFTKFFYLLGLSAIMQAFFGYFASHFISNSWLMWFIISIVQMAPVSAMVRMYIFF 2358 L+ ++F + GL + F F S F+ WF+ P + F Sbjct 2060 LVILLIFGNMYLRFGLLYFVAQFISTFGS-FLGFHQKQWFL----HFVPFDVLCNE--FL 2112 Query 2359 ASFYYVWKSYV---HIMDGCTSSTCMMCYKRNRATRVECTTIVNGVKRSFYVYANGGRGF 2415 A+F V K + HI+ GC ++ C+ C K R RV TI+NG+ +SFYV ANGG F Sbjct 2113 ATFI-VCKIVLFVRHIIVGCNNADCVACSKSARLKRVPLQTIINGMHKSFYVNANGGTCF 2171 Query 2416 CKAHNWNCLNCDTFCAGSTFISDEVARDLSLQFKRPINPTDQSAYVVDSVTVKNGALHLY 2475 C HN+ C+NCD+F G+TFI+ ++AR+L K + PT + ++D V NG LY Sbjct 2172 CNKHNFFCVNCDSFGPGNTFINGDIARELGNVVKTAVQPTAPAYVIIDKVDFVNGFYRLY 2231 Query 2476 ---------FDKAGQKTYERHPLSHFVNLDNLRANNTKGSLPINVIVFDGKSKCEESAAK 2526 FD K + L + L+N N GS N+ + K Sbjct 2232 SGDTFWRYDFDITESKYSCKEVLKNCNVLENFIVYNNSGS---NI-----------TQIK 2277 Query 2527 SASVYYSQLMCQPILLLDQALVSDVGDSTEVSVKMFDAYVDTFSATFSVPMEKLKALVAT 2586 +A VY+SQL+C+PI L++ L+S + S + + + AYVD +F ++L A ++ Sbjct 2278 NACVYFSQLLCEPIKLVNSELLSTL--SVDFNGVLHKAYVDVLCNSF---FKELTANMSM 2332 Query 2587 AHSELAKGVALDGVLSTFVSAARQGVVDTDVDTKDVIECLKLSHHSDIEVTGDSCNNFML 2646 A + G+ V D + + +H D+ ++ S NNF + Sbjct 2333 AECKATLGLT--------------------VSDDDFVSAVANAHRYDVLLSDLSFNNFFI 2372 Query 2647 TYNKVEN-MTPRDLGACIDCNARHINAQVAKSHNVSLVWNVKDYMSLSEQLRKQIRSAAK 2705 +Y K E+ ++ D+ C+ ++ +N V ++ +VW VKD+ +LS++ +K + K Sbjct 2373 SYAKPEDKLSVYDIACCMRAGSKVVNHNVLIKESIPIVWGVKDFNTLSQEGKKYLVKTTK 2432 Query 2706 KNNIPFRLTCATTRQVVNVITTKISLKGGKVVSTWFKLLLKVTLLCVLAALFCYVIMPVH 2765 + F LT + + V T I K G + L V L V + I Sbjct 2433 AKGLTFLLTFNDNQAITQVPATSIVAKQGAGFKRTYNFLWYVCLFVVALFIGVSFIDYTT 2492 Query 2766 SLSVHDGYTNEIIGYKAIQDGVTRDIVSTDDCFANKHAGFDSWFSQRGGSYR-NDKNCPV 2824 +++ GY +K I++G + + C N F+ W + G N CP+ Sbjct 2493 TVTSFHGYD-----FKYIENGQLKVFEAPLHCVRNVFDNFNQWHEAKFGVVTTNSDKCPI 2547 Query 2825 VAAIITREIGFIVPGLPGTVLRALNGDFLHFLPRVFSAVGN--ICYTPSKLIEYSDFATS 2882 V + R +VPG+P V L G L F + +A GN +CY ++ TS Sbjct 2548 VVGVSERIN--VVPGVPTNVY--LVGKTLVFTLQ--AAFGNTGVCY------DFDGVTTS 2595 Query 2883 -ACVLAAECTIFKDAMGKPVPYCYDTNLLEGSISYSELRPDTRYVLMDGSIIQFPNTYLE 2941 C+ + CT + G V YCY+T+L+EGS YS L+P+ Y + ++FP Sbjct 2596 DKCIFNSACTRLEGLGGDNV-YCYNTDLIEGSKPYSTLQPNAYYKYDAKNYVRFPEILAR 2654 Query 2942 G-SVRVVTTFDAEYCRHGTCERSEVGVCLSTSGRWVLNNEHYRALPGVFCGVDAMNLIAN 3000 G +R + T YCR G C S GVC +W +N+ R G CG ++L+ N Sbjct 2655 GFGLRTIRTLATRYCRVGECRDSHKGVCFGFD-KWYVNDG--RVDDGYICGDGLIDLLVN 2711 Query 3001 IFTPLVQPVGALDVSASVVAGGIIAILVTCAAYYFMKFRRAFGEYNHVVAANALLFLMSF 3060 + + + +S ++ + A +T + KF+R FG+ ++ V F Sbjct 2712 VLSIFSSSFSVVAMSGHMLFNFLFAAFITFLCFLVTKFKRVFGDLSYGV----------F 2761 Query 3061 TILC--LAPAYSFLPG---VYSIFYLYLTFYFTNDV--SFLAHLQWFAMFSPIVPFWITA 3113 T++C L S++ + + Y L F FT V +++ H+ + + ++P+W+ Sbjct 2762 TVVCATLINNISYVVTQNLFFMLLYAILYFVFTRTVRYAWIWHIAYIVAYFLLIPWWLLT 2821 Query 3114 IYVFCISLKHFHWFFSNYLKKRV---MFNGVTF-STFEEAALCTFLLNKEMYLRLRSETL 3169 + F L+ N K ++ +F G F TFE AA TF+L+ Y RL + T+ Sbjct 2822 WFSFAAFLE----LLPNVFKLKISTQLFEGDKFIGTFESAAAGTFVLDMRSYERLIN-TI 2876 Query 3170 LPLTQYNRYLALYNKYKYFSGALDTTSYREAACCHLAKALNDFSNSGADVLYQPPQTSIT 3229 P + Y A YNKYKY+SG+ YR A HLAKA+ D++ D+LY PP S Sbjct 2877 SP-EKLKNYAASYNKYKYYSGSASEADYRCACYAHLAKAMLDYAKDHNDMLYSPPTISYN 2935 Query 3230 SAVLQSGFRKMAFPSGKVEGCMVQVTCGTTTLNGLWLDDTVYCPRHVVCTAEDMLNPNYD 3289 S LQSG +KMA PSG VE C+V+V G+T LNG+WL DTV CPRHV+ + +L +YD Sbjct 2936 ST-LQSGLKKMAQPSGCVERCVVRVCYGSTVLNGVWLGDTVTCPRHVIAPSTTVL-IDYD 2993 Query 3290 DLLIRKSNHSFLVQAGNVQLRVIGHSMQNCLLRLKVDTSNPKTPKYKFVRIQPGQTFSVL 3349 H+F V V L V+G +M +LR+KV SN TPK+ F ++PG +F++L Sbjct 2994 HAYSTMRLHNFSVSHNGVFLGVVGVTMHGSVLRIKVSQSNVHTPKHVFKTLKPGDSFNIL 3053 Query 3350 ACYNGSPSGVYQCAMRPNHTIKGSFLNGSCGSVGFNIDYD-CVSFCYMHHMELPTGVHAG 3408 ACY G SGV+ +R N TIKGSF+NG+CGS G+N+ D V FCY+H +EL +G H G Sbjct 3054 ACYEGIASGVFGVNLRTNFTIKGSFINGACGSPGYNVRNDGTVEFCYLHQIELGSGAHVG 3113 Query 3409 TDLEGKFYGPFVDRQTAQAAGTDTTITLNVLAWLYAAVINGDRWFLNRFTTTLNDFNLVA 3468 +D G YG F D+ + Q + ++ NV+A+LYAA++NG RW+L ++ FN A Sbjct 3114 SDFTGSVYGNFDDQPSLQVESANLMLSDNVVAFLYAALLNGCRWWLCSTRVNVDGFNEWA 3173 Query 3469 MKYNYEPLTQDHVDILGPLSAQTGIAVLDMCAALKELLQNGMNGRTILGSTILEDEFTPF 3528 M Y ++ V+ L+A+TG++V + A+++ L G G+ ILG + L DEFT Sbjct 3174 MANGYTSVSS--VECYSILAAKTGVSVEQLLASIQHL-HEGFGGKNILGYSSLCDEFTLA 3230 Query 3529 DVVRQCSGVTFQGKFKKIVKGTHHWMLLTFLTSLLILVQSTQWSLFFFVYENA------- 3581 +VV+Q GV Q K++ G L + ++ W+ F +Y N Sbjct 3231 EVVKQMYGVNLQSG--KVIFGLKTMFLFSVFFTMF-------WAELF-IYTNTIWINPVI 3280 Query 3582 FLPFALGIMAVAACAMLLVKHKHAFLCLFLLPSLATVAYFNMVYMPASWVMRIMTWLELA 3641 P ++ ++ + +KHK FL +FLLP++ A +N V ++++ + Sbjct 3281 LTPIFCLLLFLSLVLTMFLKHKFLFLQVFLLPTVIATALYNCVL--DYYIVKFLADHFNY 3338 Query 3642 DTSLSGYRLKDCVMYASALVLLILMTARTVYDDAARRVWTLMNVITLVYKVYYGNSLDQA 3701 + S+ ++ V L ++ L T R + + ++I + Y +Y Sbjct 3339 NVSVLQMDVQGLVNVLVCLFVVFLHTWRFSKERFTHWFTYVCSLIAVAYTYFYSGDFLSL 3398 Query 3702 ISMWALVISVTSNYSGVVTTIMFLARAIVFVCVEYYPLLFITGNTLQCIMLVYCFLGYCC 3761 + M+ IS + Y G + + L+R IVF E +F ++ ++VY GY Sbjct 3399 LVMFLCAIS-SDWYIGAI--VFRLSRLIVFFSPES---VFSVFGDVKLTLVVYLICGYLV 3452 Query 3762 CCYFGLFCLLNRYFRLTLGVYDYLVSTQEFRYMNSQGLLPPKSSIDAFKLNIKLLGIGGK 3821 C Y+G+ NR+F+ T+GVYD+ VS EF+YM + GL P DA L+ KLLGIGG Sbjct 3453 CTYWGILYWFNRFFKCTMGVYDFKVSAAEFKYMVANGLHAPHGPFDALWLSFKLLGIGGD 3512 Query 3822 PCIKVATVQSKMSDVKCTSVVLLSVLQQLRVESSSKLWAQCVQLHNDILLAKDTTEAFEK 3881 CIK++TVQSK++D+KCT+VVLL L + + ++S WA CV LHN I L D +A Sbjct 3513 RCIKISTVQSKLTDLKCTNVVLLGCLSSMNIAANSSEWAYCVDLHNKINLCDDPEKAQSM 3572 Query 3882 MVSLLSVLLSMQGAVDINKLCEEMLDNRATLQAIASEFSSLPSYAAYATAQEAYEQAVSN 3941 +++LL+ LS ++ L + DN +TLQ++AS F S+PSY AY A++AYE A++N Sbjct 3573 LLALLAFFLSKHSDFGLDGLIDSYFDNSSTLQSVASSFVSMPSYIAYENARQAYEDAIAN 3632 Query 3942 GDSEVVLKKLKKSLNVAKSEFDHDAAMQRKLEKMADQAMTQMYKQARSEDKRAKVTSAMQ 4001 G S ++K+LK+++N+AKSEFDH+ ++Q+K+ +MA+QA TQMYK+ARS ++++KV SAM Sbjct 3633 GSSSQLIKQLKRAMNIAKSEFDHEISVQKKINRMAEQAATQMYKEARSVNRKSKVISAMH 3692 Query 4002 TMLFTMLRKLDNDALNNIINNARDGCVPLNIIPLTTAAKLMVVVPDYGTY-KNTCDGNTF 4060 ++LF MLR+LD ++ ++N ARDG VPL++IP T+A+KL +V PD +Y K CDG+ Sbjct 3693 SLLFGMLRRLDMSSVETVLNLARDGVVPLSVIPATSASKLTIVSPDLESYSKIVCDGSV- 3751 Query 4061 TYASALWEIQQVVDADSKIVQLSEINMDNSPNLAWPLIVTALRANSAVKLQNNELSPVAL 4120 YA +W + V D D + V + EI +N L WPLI+ R VKLQNNE+ P L Sbjct 3752 HYAGVVWTLNDVKDNDGRPVHVKEITKENVETLTWPLILNCER---VVKLQNNEIMPGKL 3808 Query 4121 RQMSCAAGTTQTACTDDNALAYYNNAKGGRFVLALLSDHQDLKWARFPKSDGTGTIYTEL 4180 +Q A D NAL YN G F+ A +S+ DLK+ ++ G TI EL Sbjct 3809 KQKPMKAEGDGGVLGDGNAL--YNTEGGKTFMYAYISNKADLKFVKWEYEGGCNTI--EL 3864 Query 4181 EPPCRFVTDTPKGPKVKYLYFIKGLNNLNRGMVLGSLAATVRLQAGNATEVPANSTVLSF 4240 + PCRF+ +TP GP+VKYLYF+K LN L RG VLG + AT+RLQAG TE+ NS +L+ Sbjct 3865 DSPCRFMVETPNGPQVKYLYFVKNLNTLRRGAVLGFIGATIRLQAGKQTELAVNSGLLTA 3924 Query 4241 CAFAVDPAKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPEANMDQESFGGASCCLY 4300 CAF+VDPA Y + + G +P++NC+KML G GQAIT + +AN +Q+S+GGAS CLY Sbjct 3925 CAFSVDPATTYLEAVKHGAKPVSNCIKMLSNGAGNGQAITTSVDANTNQDSYGGASICLY 3984 Query 4301 CRCHIDHPNPKGFCDLKGKYVQIPTTCANDPVGFTLRNTVCTVCGMWKGYGCSCDQLREP 4360 CR H+ HP+ G+C KGK VQ+P C DP+ F L N VC VCG W G+GC+CD+ Sbjct 3985 CRAHVPHPSMDGYCKFKGKCVQVPIGCL-DPIRFCLENNVCNVCGCWLGHGCACDR---T 4040 Query 4361 MMQSADASTFLN 4372 +QS D S +LN Sbjct 4041 TIQSVDIS-YLN 4051 Range 2: 1265 to 1434 Score:79.7 bits(195), Expect:6e-13, Method:Compositional matrix adjust., Identities:63/185(34%), Positives:89/185(48%), Gaps:19/185(10%) Query 1010 NVAIKCIDIVKEAQSAKPTVIVNAANTHLKHGGGVAGALNKATNGAMQNESDEYIRQNGP 1069 NV DI +VNAAN +L HGGGVA A++ T G +Q+ S +YI NGP Sbjct 1265 NVKFYLGDISHLVNCVSFDFVVNAANENLLHGGGVARAIDILTEGQLQSLSKDYISSNGP 1324 Query 1070 LTVGGSCLLSGHNLAEKCLHVVGPNLNAGEDVQLLKRAYENFNSQD-VLLAPLLSAGIFG 1128 L VG +L +VVGP E LL AY + ++ + L PLLS GIFG Sbjct 1325 LKVGAGVMLECEKF--NVFNVVGPRTGKHEH-SLLVEAYNSILFENGIPLMPLLSCGIFG 1381 Query 1129 AKPLQSLKM---CVEIVRTQVYLAVNDKSLYDQIVLDYLDSLKPKVESPNKEEEPKLEEP 1185 + SLK C QV++ +++ +Q VL +LD L + P +++ Sbjct 1382 VRIENSLKALFSCDINKPLQVFVYSSNE---EQAVLKFLDGL---------DLTPVIDDV 1429 Query 1186 KAVQP 1190 V+P Sbjct 1430 DVVKP 1434 >RecName: Full=Replicase polyprotein 1a; Short=pp1a; AltName: Full=ORF1a polyprotein; Contains: RecName: Full=Non-structural protein 1; Short=nsp1; AltName: Full=p9; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p87; Contains: RecName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=PL1-PRO/PL2-PRO; AltName: Full=PLP1/PLP2; AltName: Full=Papain-like proteinases 1/2; AltName: Full=p195; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; AltName: Full=Peptide HD2; Contains: RecName: Full=3C-like proteinase; Short=3CL-PRO; Short=3CLp; AltName: Full=M-PRO; AltName: Full=nsp5; AltName: Full=p34; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; AltName: Full=p5; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; AltName: Full=p23; Contains: RecName: Full=Non-structural protein 9; Short=nsp9; AltName: Full=p12; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; AltName: Full=p16; Contains: RecName: Full=Non-structural protein 11; Short=nsp11 [Human coronavirus 229E] Sequence ID: P0C6U2.1 Length: 4085 Range 1: 1990 to 4076 Score:1174 bits(3036), Expect:0.0, Method:Compositional matrix adjust., Identities:760/2229(34%), Positives:1157/2229(51%), Gaps:201/2229(9%) Query 2203 WLLLLSICLGSLTYVTAVLGVCLSSLGVPSYCDGVRELYINSSNVTTMDFCQGYFPCSVC 2262 WLL L L Y + + G ++C Y SN D+C G C +C Sbjct 1990 WLLAKFTKLLLLIYTLYSVVLLCVRFGPFNFCSETVNGYA-KSNFVKDDYCDGSLGCKMC 2048 Query 2263 LSGLDSLDSYPALETIQVTISS--------YKLDLTFLGLAAEWLLAYMLFTKFFYLLGL 2314 L G L + L+ + I+ + + + L +L ++L+ ++ + Sbjct 2049 LFGYQELSQFSHLDVVWKHITDPLFSNMQPFIVMVLLLIFGDNYLRCFLLY----FVAQM 2104 Query 2315 SAIMQAFFGYFASHFISNSWLMWFII--SIVQMAPVSAMVRMYIFFASFYYVWKSYVHIM 2372 + + F GY ++ W + FI I V+ +V I F H++ Sbjct 2105 ISTVGVFLGYKETN-----WFLHFIPFDVICDELLVTVIVIKVISFVR---------HVL 2150 Query 2373 DGCTSSTCMMCYKRNRATRVECTTIVNGVKRSFYVYANGGRGFCKAHNWNCLNCDTFCAG 2432 GC + C+ C K R R TIVNGV+RSFYV ANGG FCK H + C++CD++ G Sbjct 2151 FGCENPDCIACSKSARLKRFPVNTIVNGVQRSFYVNANGGSKFCKKHRFFCVDCDSYGYG 2210 Query 2433 STFISDEVARDLSLQFKRPINPTDQSAYVVDSVTVKNGALHLY---------FDKAGQKT 2483 STFI+ EV+R+L K + PT + ++D V +NG LY FD K Sbjct 2211 STFITPEVSRELGNITKTNVQPTGPAYVMIDKVEFENGFYRLYSCETFWRYNFDITESKY 2270 Query 2484 YERHPLSHFVNLDNLRANNTKGSLPINVIVFDGKSKCEESAAKSASVYYSQLMCQPILLL 2543 + + LD+ N G+ NV + K+ASVY+SQL+C+PI L+ Sbjct 2271 SCKEVFKNCNVLDDFIVFNNNGT---NV-----------TQVKNASVYFSQLLCRPIKLV 2316 Query 2544 DQALVSDVGDSTEVSVKMFDAYVDTFSATFSVPMEKLKALVATAHSELAKGVALDGVLST 2603 D L+S + S + + + AY+D +F + L A ++ A + A G+++ Sbjct 2317 DSELLSTL--SVDFNGVLHKAYIDVLRNSFG---KDLNANMSLAECKRALGLSISD--HE 2369 Query 2604 FVSAARQGVVDTDVDTKDVIECLKLSHHSDIEVTGDSCNNFMLTYNK-VENMTPRDLGAC 2662 F SA +H D+ ++ S NNF+ +Y K E ++ DL C Sbjct 2370 FTSAISN------------------AHRCDVLLSDLSFNNFVSSYAKPEEKLSAYDLACC 2411 Query 2663 IDCNARHINAQVAKSHNVSLVWNVKDYMSLSEQLRKQIRSAAKKNNIPFRLTCATTRQVV 2722 + A+ +NA V +VW+ KD+ SLS + RK I +K + F LT + V Sbjct 2412 MRAGAKVVNANVLTKDQTPIVWHAKDFNSLSAEGRKYIVKTSKAKGLTFLLTINENQAVT 2471 Query 2723 NVITTKISLKGGKVVS----TWFKLLLKVTLLCVLAALFCYVIMPVHSLSVHDGYTNEII 2778 + T I K G + TW LL L+C++ C+ MP + + E Sbjct 2472 QIPATSIVAKQGAGDAGHSLTWLWLL--CGLVCLIQFYLCF-FMPYFMYDIVSSF--EGY 2526 Query 2779 GYKAIQDGVTRDIVSTDDCFANKHAGFDSW-FSQRGGSYRNDKNCPVVAAIITREIGFIV 2837 +K I++G ++ + C N F+ W +++ G + N ++CP+V + EI V Sbjct 2527 DFKYIENGQLKNFEAPLKCVRNVFENFEDWHYAKFGFTPLNKQSCPIVVGV--SEIVNTV 2584 Query 2838 PGLPGTVLRALNGDFLHFLPRVFSAVGNICY------TPSKLIEYSDFATSACVLAAECT 2891 G+P V L G L F + +CY TP K C+ + CT Sbjct 2585 AGIPSNVY--LVGKTLIFTLQAAFGNAGVCYDIFGVTTPEK-----------CIFTSACT 2631 Query 2892 IFKDAMGKPVPYCYDTNLLEGSISYSELRPDTRYVLMDGSIIQFPNTYLEG-SVRVVTTF 2950 + G V YCY+T L+EGS+ YS ++ + Y +G+ I+ P +G R V T Sbjct 2632 RLEGLGGNNV-YCYNTALMEGSLPYSSIQANAYYKYDNGNFIKLPEVIAQGFGFRTVRTI 2690 Query 2951 DAEYCRHGTCERSEVGVCLSTSGRWVLNNEHYRALPGVFCGVDAMNLIANIFTPLVQPVG 3010 +YCR G C S GVC +W +N+ R G CG NL+ NI + Sbjct 2691 ATKYCRVGECVESNAGVCFGFD-KWFVNDG--RVANGYVCGTGLWNLVFNILSMFSSSFS 2747 Query 3011 ALDVSASVVAGGIIAILVTCAAYYFMKFRRAFGEYN----------------HVVAANAL 3054 +S ++ + + KFRR FG+ + ++V N L Sbjct 2748 VAAMSGQILLNCALGAFAIFCCFLVTKFRRMFGDLSVGVCTVVVAVLLNNVSYIVTQN-L 2806 Query 3055 LFLMSFTILCLAPAYSFLPGVYSIFYLYLTFYFTNDVSFLAHLQWFAMFSPIVPFWITAI 3114 + ++++ IL Y F +++ Y +SF P+W+ A Sbjct 2807 VTMIAYAIL-----YFFATRSLRYAWIWCAAYLIAYISF-------------APWWLCAW 2848 Query 3115 YVFCISLKHFHWFFSNYLKKRV---MFNGVTF-STFEEAALCTFLLNKEMYLRLRSETLL 3170 Y L + LK +V +F G F TFE AA TF+++ Y +L + ++ Sbjct 2849 YF----LAMLTGLLPSLLKLKVSTNLFEGDKFVGTFESAAAGTFVIDMRSYEKL-ANSIS 2903 Query 3171 PLTQYNRYLALYNKYKYFSGALDTTSYREAACCHLAKALNDFSNSGADVLYQPPQTSITS 3230 P + Y A YN+YKY+SG + YR A +LAKA+ DFS D+LY PP S S Sbjct 2904 P-EKLKSYAASYNRYKYYSGNANEADYRCACYAYLAKAMLDFSRDHNDILYTPPTVSYGS 2962 Query 3231 AVLQSGFRKMAFPSGKVEGCMVQVTCGTTTLNGLWLDDTVYCPRHVVCT-AEDMLNPNYD 3289 LQ+G RKMA PSG VE C+V+V G T LNGLWL D VYCPRHV+ + ++ +++ Sbjct 2963 T-LQAGLRKMAQPSGFVEKCVVRVCYGNTVLNGLWLGDIVYCPRHVIASNTTSAIDYDHE 3021 Query 3290 DLLIRKSNHSFLVQAGNVQLRVIGHSMQNCLLRLKVDTSNPKTPKYKFVRIQPGQTFSVL 3349 ++R H+F + +G L V+G +M L++KV +N TP++ F ++ G+ F++L Sbjct 3022 YSIMRL--HNFSIISGTAFLGVVGATMHGVTLKIKVSQTNMHTPRHSFRTLKSGEGFNIL 3079 Query 3350 ACYNGSPSGVYQCAMRPNHTIKGSFLNGSCGSVGFNIDYDCVSFCYMHHMELPTGVHAGT 3409 ACY+G GV+ MR N TI+GSF+NG+CGS G+N+ V F YMH +EL +G H G+ Sbjct 3080 ACYDGCAQGVFGVNMRTNWTIRGSFINGACGSPGYNLKNGEVEFVYMHQIELGSGSHVGS 3139 Query 3410 DLEGKFYGPFVDRQTAQAAGTDTTITLNVLAWLYAAVINGDRWFLNRFTTTLNDFNLVAM 3469 +G YG F D+ Q + +T+NV+A+LYAA++NG W+L + +N A Sbjct 3140 SFDGVMYGGFEDQPNLQVESANQMLTVNVVAFLYAAILNGCTWWLKGEKLFVEHYNEWAQ 3199 Query 3470 KYNYEPLTQDHVDILGPLSAQTGIAVLDMCAALKELLQNGMNGRTILGSTILEDEFTPFD 3529 + + + D L+A+TG+ V + A+ ++L NG G+ ILG + L DEF+ + Sbjct 3200 ANGFTAMNGE--DAFSILAAKTGVCVERLLHAI-QVLNNGFGGKQILGYSSLNDEFSINE 3256 Query 3530 VVRQCSGVTFQ-GKFKKIVKGTHHWM-LLTFLTSLLILVQSTQWSLFFFVYENAFLPFAL 3587 VV+Q GV Q GK + K + + L + +T W V PF + Sbjct 3257 VVKQMFGVNLQSGKTTSMFKSISLFAGFFVMFWAELFVYTTTIW-----VNPGFLTPFMI 3311 Query 3588 GIMAVAACAMLLVKHKHAFLCLFLLPSLATVAYFNMVYMPASW---VMRIMTWLELADTS 3644 ++A++ C +VKHK FL +FLLPS+ A N +W V +++ + S Sbjct 3312 LLVALSLCLTFVVKHKVLFLQVFLLPSIIVAAIQN-----CAWDYHVTKVLAEKFDYNVS 3366 Query 3645 LSGYRLKDCVMYASALVLLILMTARTVYDDAARRVWTLMNVITLVYKVYYGNSLDQAISM 3704 + ++ V L + +L T R + L ++I ++Y Y S D +S+ Sbjct 3367 VMQMDIQGFVNIFICLFVALLHTWRFAKERCTHWCTYLFSLIAVLYTALY--SYDY-VSL 3423 Query 3705 WALVISVTSNYSGVVTTIMFLAR-AIVFVCVEYYPLLFITGNTLQCIMLVYCFLGYCCCC 3763 +++ SN + I + R + F+ VEY + ++ ++L Y LG+ C Sbjct 3424 LVMLLCAISNEWYIGAIIFRICRFGVAFLPVEYVSYF----DGVKTVLLFYMLLGFVSCM 3479 Query 3764 YFGLFCLLNRYFRLTLGVYDYLVSTQEFRYMNSQGLLPPKSSIDAFKLNIKLLGIGGKPC 3823 Y+GL +NR+ + TLGVYD+ VS EF+YM + GL P DA L+ KL+GIGG Sbjct 3480 YYGLLYWINRFCKCTLGVYDFCVSPAEFKYMVANGLNAPNGPFDALFLSFKLMGIGGPRT 3539 Query 3824 IKVATVQSKMSDVKCTSVVLLSVLQQLRVESSSKLWAQCVQLHNDILLAKDTTEAFEKMV 3883 IKV+TVQSK++D+KCT+VVL+ +L + + S+SK WA CV++HN I L D A E ++ Sbjct 3540 IKVSTVQSKLTDLKCTNVVLMGILSNMNIASNSKEWAYCVEMHNKINLCDDPETAQELLL 3599 Query 3884 SLLSVLLSMQGAVDINKLCEEMLDNRATLQAIASEFSSLPSYAAYATAQEAYEQAVSNGD 3943 +LL+ LS + L + +N + LQ++AS F +PS+ AY TA++ YE AV+NG Sbjct 3600 ALLAFFLSKHSDFGLGDLVDSYFENDSILQSVASSFVGMPSFVAYETARQEYENAVANGS 3659 Query 3944 SEVVLKKLKKSLNVAKSEFDHDAAMQRKLEKMADQAMTQMYKQARSEDKRAKVTSAMQTM 4003 S ++K+LKK++NVAK+EFD ++++Q+K+ +MA+QA MYK+AR+ ++++KV SAM ++ Sbjct 3660 SPQIIKQLKKAMNVAKAEFDRESSVQKKINRMAEQAAAAMYKEARAVNRKSKVVSAMHSL 3719 Query 4004 LFTMLRKLDNDALNNIINNARDGCVPLNIIPLTTAAKLMVVVPDYGTYKNTCDGNTFTYA 4063 LF MLR+LD +++ I+N AR+G VPL++IP T+AA+L+VVVPD+ ++ YA Sbjct 3720 LFGMLRRLDMSSVDTILNMARNGVVPLSVIPATSAARLVVVVPDHDSFVKMMVDGFVHYA 3779 Query 4064 SALWEIQQVVDADSKIVQLSEINMDNSPNLAWPLIVTALRANSAVKLQNNELSPVALRQM 4123 +W +Q+V D D K V L ++ +N L WPLI+T R VKLQNNE+ P ++ Sbjct 3780 GVVWTLQEVKDNDGKNVHLKDVTKENQEILVWPLILTCER---VVKLQNNEIMPGKMKVK 3836 Query 4124 SCAAGTTQTACTDDNALAYYNNAKGGRFVLALLSDHQDLKWARFPKSDGTGTIYTELEPP 4183 + ++ NAL YNN G F+ A ++ +K+ ++ G T+ ELEPP Sbjct 3837 ATKGEGDGGITSEGNAL--YNNEGGRAFMYAYVTTKPGMKYVKWEHDSGVVTV--ELEPP 3892 Query 4184 CRFVTDTPKGPKVKYLYFIKGLNNLNRGMVLGSLAATVRLQAGNATEVPANSTVLSFCAF 4243 CRFV DTP GP++KYLYF+K LNNL RG VLG + ATVRLQAG TE +NS +L+ C+F Sbjct 3893 CRFVIDTPTGPQIKYLYFVKNLNNLRRGAVLGYIGATVRLQAGKQTEFVSNSHLLTHCSF 3952 Query 4244 AVDPAKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPEANMDQESFGGASCCLYCRC 4303 AVDPA AY D + G +P+ NCVKML +G+GQAIT T ++N Q+++GGAS C+YCR Sbjct 3953 AVDPAAAYLDAVKQGAKPVGNCVKMLTNGSGSGQAITCTIDSNTTQDTYGGASVCIYCRA 4012 Query 4304 HIDHPNPKGFCDLKGKYVQIPTTCANDPVGFTLRNTVCTVCGMWKGYGCSCDQLREPMMQ 4363 H+ HP GFC KGK+VQ+P NDP+ F L NTVC VCG W +GC+CD+ +Q Sbjct 4013 HVAHPTMDGFCQYKGKWVQVPIG-TNDPIRFCLENTVCKVCGCWLNHGCTCDR---TAIQ 4068 Query 4364 SADASTFLN 4372 S D S +LN Sbjct 4069 SFDNS-YLN 4076 Range 2: 1254 to 1466 Score:91.7 bits(226), Expect:2e-16, Method:Compositional matrix adjust., Identities:75/231(32%), Positives:114/231(49%), Gaps:27/231(11%) Query 980 LDDAIEAEPEPEPLPEEPVNQFVGYLKLTDNVAIKCIDIVKEAQSAKPTVIVNAANTHLK 1039 + + ++ P+ E + +E +N F+ + DNVA D+ IVNAAN +L Sbjct 1254 IKNTVDTTPKEEFVVKEKLNAFL----VHDNVAFYQGDVDTVVNGVDFDFIVNAANENLA 1309 Query 1040 HGGGVAGALNKATNGAMQNESDEYIRQNGPLTVGGSCLLSGHNLAEKCLHVVGPNLNAGE 1099 HGGG+A AL+ T G +Q S E+I G + VG ++ +L + +VVGP E Sbjct 1310 HGGGLAKALDVYTKGKLQRLSKEHIGLAGKVKVGTGVMVECDSL--RIFNVVGPRKGKHE 1367 Query 1100 DVQLLKRAYENFNS-QDVLLAPLLSAGIFGAKPLQSLKMCVEIVRTQVYLAVNDKSLYDQ 1158 LL +AY N+ Q L P+LS GIFG K SL++ +++ T+ + Sbjct 1368 R-DLLIKAYNTINNEQGTPLTPILSCGIFGIKLETSLEVLLDVCNTK-----------EV 1415 Query 1159 IVLDYLDSLKPKVE-------SPNKEEEPKLE-EPKAVQPVAEKPVDVKPK 1201 V Y D+ KV+ + K E+PK+E +P +V VA KP V K Sbjct 1416 KVFVYTDTEVCKVKDFVSGLVNVQKVEQPKIEPKPVSVIKVAPKPYRVDGK 1466 >RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Non-structural protein 1; Short=nsp1; AltName: Full=p9; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p87; Contains: RecName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=PL1-PRO/PL2-PRO; AltName: Full=PLP1/PLP2; AltName: Full=Papain-like proteinases 1/2; AltName: Full=p195; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; AltName: Full=Peptide HD2; Contains: RecName: Full=3C-like proteinase; Short=3CL-PRO; Short=3CLp; AltName: Full=M-PRO; AltName: Full=nsp5; AltName: Full=p34; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; AltName: Full=p5; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; AltName: Full=p23; Contains: RecName: Full=Viral protein genome-linked nsp9; AltName: Full=Non-structural protein 9; Short=nsp9; AltName: Full=RNA-capping enzyme subunit nsp9; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; AltName: Full=p16; Contains: RecName: Full=RNA-directed RNA polymerase nsp12; Short=Pol; Short=RdRp; AltName: Full=nsp12; AltName: Full=p100; Contains: RecName: Full=Helicase; Short=Hel; AltName: Full=nsp13; AltName: Full=p66; AltName: Full=p66-HEL; Contains: RecName: Full=Exoribonuclease; Short=ExoN; AltName: Full=nsp14; Contains: RecName: Full=Uridylate-specific endoribonuclease; AltName: Full=NendoU; AltName: Full=nsp15; AltName: Full=p41; Contains: RecName: Full=Putative 2'-O-methyl transferase; AltName: Full=nsp16 [Human coronavirus 229E] Sequence ID: P0C6X1.1 Length: 6758 Range 1: 1990 to 4076 Score:1169 bits(3025), Expect:0.0, Method:Compositional matrix adjust., Identities:760/2229(34%), Positives:1157/2229(51%), Gaps:201/2229(9%) Query 2203 WLLLLSICLGSLTYVTAVLGVCLSSLGVPSYCDGVRELYINSSNVTTMDFCQGYFPCSVC 2262 WLL L L Y + + G ++C Y SN D+C G C +C Sbjct 1990 WLLAKFTKLLLLIYTLYSVVLLCVRFGPFNFCSETVNGYA-KSNFVKDDYCDGSLGCKMC 2048 Query 2263 LSGLDSLDSYPALETIQVTISS--------YKLDLTFLGLAAEWLLAYMLFTKFFYLLGL 2314 L G L + L+ + I+ + + + L +L ++L+ ++ + Sbjct 2049 LFGYQELSQFSHLDVVWKHITDPLFSNMQPFIVMVLLLIFGDNYLRCFLLY----FVAQM 2104 Query 2315 SAIMQAFFGYFASHFISNSWLMWFII--SIVQMAPVSAMVRMYIFFASFYYVWKSYVHIM 2372 + + F GY ++ W + FI I V+ +V I F H++ Sbjct 2105 ISTVGVFLGYKETN-----WFLHFIPFDVICDELLVTVIVIKVISFVR---------HVL 2150 Query 2373 DGCTSSTCMMCYKRNRATRVECTTIVNGVKRSFYVYANGGRGFCKAHNWNCLNCDTFCAG 2432 GC + C+ C K R R TIVNGV+RSFYV ANGG FCK H + C++CD++ G Sbjct 2151 FGCENPDCIACSKSARLKRFPVNTIVNGVQRSFYVNANGGSKFCKKHRFFCVDCDSYGYG 2210 Query 2433 STFISDEVARDLSLQFKRPINPTDQSAYVVDSVTVKNGALHLY---------FDKAGQKT 2483 STFI+ EV+R+L K + PT + ++D V +NG LY FD K Sbjct 2211 STFITPEVSRELGNITKTNVQPTGPAYVMIDKVEFENGFYRLYSCETFWRYNFDITESKY 2270 Query 2484 YERHPLSHFVNLDNLRANNTKGSLPINVIVFDGKSKCEESAAKSASVYYSQLMCQPILLL 2543 + + LD+ N G+ NV + K+ASVY+SQL+C+PI L+ Sbjct 2271 SCKEVFKNCNVLDDFIVFNNNGT---NV-----------TQVKNASVYFSQLLCRPIKLV 2316 Query 2544 DQALVSDVGDSTEVSVKMFDAYVDTFSATFSVPMEKLKALVATAHSELAKGVALDGVLST 2603 D L+S + S + + + AY+D +F + L A ++ A + A G+++ Sbjct 2317 DSELLSTL--SVDFNGVLHKAYIDVLRNSFG---KDLNANMSLAECKRALGLSISD--HE 2369 Query 2604 FVSAARQGVVDTDVDTKDVIECLKLSHHSDIEVTGDSCNNFMLTYNKVE-NMTPRDLGAC 2662 F SA +H D+ ++ S NNF+ +Y K E ++ DL C Sbjct 2370 FTSAISN------------------AHRCDVLLSDLSFNNFVSSYAKPEEKLSAYDLACC 2411 Query 2663 IDCNARHINAQVAKSHNVSLVWNVKDYMSLSEQLRKQIRSAAKKNNIPFRLTCATTRQVV 2722 + A+ +NA V +VW+ KD+ SLS + RK I +K + F LT + V Sbjct 2412 MRAGAKVVNANVLTKDQTPIVWHAKDFNSLSAEGRKYIVKTSKAKGLTFLLTINENQAVT 2471 Query 2723 NVITTKISLKGGKVVS----TWFKLLLKVTLLCVLAALFCYVIMPVHSLSVHDGYTNEII 2778 + T I K G + TW LL L+C++ C+ MP + + E Sbjct 2472 QIPATSIVAKQGAGDAGHSLTWLWLL--CGLVCLIQFYLCF-FMPYFMYDIVSSF--EGY 2526 Query 2779 GYKAIQDGVTRDIVSTDDCFANKHAGFDSW-FSQRGGSYRNDKNCPVVAAIITREIGFIV 2837 +K I++G ++ + C N F+ W +++ G + N ++CP+V + EI V Sbjct 2527 DFKYIENGQLKNFEAPLKCVRNVFENFEDWHYAKFGFTPLNKQSCPIVVGV--SEIVNTV 2584 Query 2838 PGLPGTVLRALNGDFLHFLPRVFSAVGNICY------TPSKLIEYSDFATSACVLAAECT 2891 G+P V L G L F + +CY TP K C+ + CT Sbjct 2585 AGIPSNVY--LVGKTLIFTLQAAFGNAGVCYDIFGVTTPEK-----------CIFTSACT 2631 Query 2892 IFKDAMGKPVPYCYDTNLLEGSISYSELRPDTRYVLMDGSIIQFPNTYLEG-SVRVVTTF 2950 + G V YCY+T L+EGS+ YS ++ + Y +G+ I+ P +G R V T Sbjct 2632 RLEGLGGNNV-YCYNTALMEGSLPYSSIQANAYYKYDNGNFIKLPEVIAQGFGFRTVRTI 2690 Query 2951 DAEYCRHGTCERSEVGVCLSTSGRWVLNNEHYRALPGVFCGVDAMNLIANIFTPLVQPVG 3010 +YCR G C S GVC +W +N+ R G CG NL+ NI + Sbjct 2691 ATKYCRVGECVESNAGVCFGFD-KWFVNDG--RVANGYVCGTGLWNLVFNILSMFSSSFS 2747 Query 3011 ALDVSASVVAGGIIAILVTCAAYYFMKFRRAFGE----------------YNHVVAANAL 3054 +S ++ + + KFRR FG+ +++V N L Sbjct 2748 VAAMSGQILLNCALGAFAIFCCFLVTKFRRMFGDLSVGVCTVVVAVLLNNVSYIVTQN-L 2806 Query 3055 LFLMSFTILCLAPAYSFLPGVYSIFYLYLTFYFTNDVSFLAHLQWFAMFSPIVPFWITAI 3114 + ++++ IL Y F +++ Y +SF P+W+ A Sbjct 2807 VTMIAYAIL-----YFFATRSLRYAWIWCAAYLIAYISF-------------APWWLCAW 2848 Query 3115 YVFCISLKHFHWFFSNYLKKRV---MFNGVTF-STFEEAALCTFLLNKEMYLRLRSETLL 3170 Y L + LK +V +F G F TFE AA TF+++ Y +L + ++ Sbjct 2849 YF----LAMLTGLLPSLLKLKVSTNLFEGDKFVGTFESAAAGTFVIDMRSYEKL-ANSIS 2903 Query 3171 PLTQYNRYLALYNKYKYFSGALDTTSYREAACCHLAKALNDFSNSGADVLYQPPQTSITS 3230 P + Y A YN+YKY+SG + YR A +LAKA+ DFS D+LY PP S S Sbjct 2904 P-EKLKSYAASYNRYKYYSGNANEADYRCACYAYLAKAMLDFSRDHNDILYTPPTVSYGS 2962 Query 3231 AVLQSGFRKMAFPSGKVEGCMVQVTCGTTTLNGLWLDDTVYCPRHVVCT-AEDMLNPNYD 3289 LQ+G RKMA PSG VE C+V+V G T LNGLWL D VYCPRHV+ + ++ +++ Sbjct 2963 T-LQAGLRKMAQPSGFVEKCVVRVCYGNTVLNGLWLGDIVYCPRHVIASNTTSAIDYDHE 3021 Query 3290 DLLIRKSNHSFLVQAGNVQLRVIGHSMQNCLLRLKVDTSNPKTPKYKFVRIQPGQTFSVL 3349 ++R H+F + +G L V+G +M L++KV +N TP++ F ++ G+ F++L Sbjct 3022 YSIMRL--HNFSIISGTAFLGVVGATMHGVTLKIKVSQTNMHTPRHSFRTLKSGEGFNIL 3079 Query 3350 ACYNGSPSGVYQCAMRPNHTIKGSFLNGSCGSVGFNIDYDCVSFCYMHHMELPTGVHAGT 3409 ACY+G GV+ MR N TI+GSF+NG+CGS G+N+ V F YMH +EL +G H G+ Sbjct 3080 ACYDGCAQGVFGVNMRTNWTIRGSFINGACGSPGYNLKNGEVEFVYMHQIELGSGSHVGS 3139 Query 3410 DLEGKFYGPFVDRQTAQAAGTDTTITLNVLAWLYAAVINGDRWFLNRFTTTLNDFNLVAM 3469 +G YG F D+ Q + +T+NV+A+LYAA++NG W+L + +N A Sbjct 3140 SFDGVMYGGFEDQPNLQVESANQMLTVNVVAFLYAAILNGCTWWLKGEKLFVEHYNEWAQ 3199 Query 3470 KYNYEPLTQDHVDILGPLSAQTGIAVLDMCAALKELLQNGMNGRTILGSTILEDEFTPFD 3529 + + + D L+A+TG+ V + A+ ++L NG G+ ILG + L DEF+ + Sbjct 3200 ANGFTAMNGE--DAFSILAAKTGVCVERLLHAI-QVLNNGFGGKQILGYSSLNDEFSINE 3256 Query 3530 VVRQCSGVTFQ-GKFKKIVKGTHHWM-LLTFLTSLLILVQSTQWSLFFFVYENAFLPFAL 3587 VV+Q GV Q GK + K + + L + +T W V PF + Sbjct 3257 VVKQMFGVNLQSGKTTSMFKSISLFAGFFVMFWAELFVYTTTIW-----VNPGFLTPFMI 3311 Query 3588 GIMAVAACAMLLVKHKHAFLCLFLLPSLATVAYFNMVYMPASW---VMRIMTWLELADTS 3644 ++A++ C +VKHK FL +FLLPS+ A N +W V +++ + S Sbjct 3312 LLVALSLCLTFVVKHKVLFLQVFLLPSIIVAAIQN-----CAWDYHVTKVLAEKFDYNVS 3366 Query 3645 LSGYRLKDCVMYASALVLLILMTARTVYDDAARRVWTLMNVITLVYKVYYGNSLDQAISM 3704 + ++ V L + +L T R + L ++I ++Y Y S D +S+ Sbjct 3367 VMQMDIQGFVNIFICLFVALLHTWRFAKERCTHWCTYLFSLIAVLYTALY--SYDY-VSL 3423 Query 3705 WALVISVTSNYSGVVTTIMFLAR-AIVFVCVEYYPLLFITGNTLQCIMLVYCFLGYCCCC 3763 +++ SN + I + R + F+ VEY + ++ ++L Y LG+ C Sbjct 3424 LVMLLCAISNEWYIGAIIFRICRFGVAFLPVEYVSYF----DGVKTVLLFYMLLGFVSCM 3479 Query 3764 YFGLFCLLNRYFRLTLGVYDYLVSTQEFRYMNSQGLLPPKSSIDAFKLNIKLLGIGGKPC 3823 Y+GL +NR+ + TLGVYD+ VS EF+YM + GL P DA L+ KL+GIGG Sbjct 3480 YYGLLYWINRFCKCTLGVYDFCVSPAEFKYMVANGLNAPNGPFDALFLSFKLMGIGGPRT 3539 Query 3824 IKVATVQSKMSDVKCTSVVLLSVLQQLRVESSSKLWAQCVQLHNDILLAKDTTEAFEKMV 3883 IKV+TVQSK++D+KCT+VVL+ +L + + S+SK WA CV++HN I L D A E ++ Sbjct 3540 IKVSTVQSKLTDLKCTNVVLMGILSNMNIASNSKEWAYCVEMHNKINLCDDPETAQELLL 3599 Query 3884 SLLSVLLSMQGAVDINKLCEEMLDNRATLQAIASEFSSLPSYAAYATAQEAYEQAVSNGD 3943 +LL+ LS + L + +N + LQ++AS F +PS+ AY TA++ YE AV+NG Sbjct 3600 ALLAFFLSKHSDFGLGDLVDSYFENDSILQSVASSFVGMPSFVAYETARQEYENAVANGS 3659 Query 3944 SEVVLKKLKKSLNVAKSEFDHDAAMQRKLEKMADQAMTQMYKQARSEDKRAKVTSAMQTM 4003 S ++K+LKK++NVAK+EFD ++++Q+K+ +MA+QA MYK+AR+ ++++KV SAM ++ Sbjct 3660 SPQIIKQLKKAMNVAKAEFDRESSVQKKINRMAEQAAAAMYKEARAVNRKSKVVSAMHSL 3719 Query 4004 LFTMLRKLDNDALNNIINNARDGCVPLNIIPLTTAAKLMVVVPDYGTYKNTCDGNTFTYA 4063 LF MLR+LD +++ I+N AR+G VPL++IP T+AA+L+VVVPD+ ++ YA Sbjct 3720 LFGMLRRLDMSSVDTILNMARNGVVPLSVIPATSAARLVVVVPDHDSFVKMMVDGFVHYA 3779 Query 4064 SALWEIQQVVDADSKIVQLSEINMDNSPNLAWPLIVTALRANSAVKLQNNELSPVALRQM 4123 +W +Q+V D D K V L ++ +N L WPLI+T R VKLQNNE+ P ++ Sbjct 3780 GVVWTLQEVKDNDGKNVHLKDVTKENQEILVWPLILTCER---VVKLQNNEIMPGKMKVK 3836 Query 4124 SCAAGTTQTACTDDNALAYYNNAKGGRFVLALLSDHQDLKWARFPKSDGTGTIYTELEPP 4183 + ++ NAL YNN G F+ A ++ +K+ ++ G T+ ELEPP Sbjct 3837 ATKGEGDGGITSEGNAL--YNNEGGRAFMYAYVTTKPGMKYVKWEHDSGVVTV--ELEPP 3892 Query 4184 CRFVTDTPKGPKVKYLYFIKGLNNLNRGMVLGSLAATVRLQAGNATEVPANSTVLSFCAF 4243 CRFV DTP GP++KYLYF+K LNNL RG VLG + ATVRLQAG TE +NS +L+ C+F Sbjct 3893 CRFVIDTPTGPQIKYLYFVKNLNNLRRGAVLGYIGATVRLQAGKQTEFVSNSHLLTHCSF 3952 Query 4244 AVDPAKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPEANMDQESFGGASCCLYCRC 4303 AVDPA AY D + G +P+ NCVKML +G+GQAIT T ++N Q+++GGAS C+YCR Sbjct 3953 AVDPAAAYLDAVKQGAKPVGNCVKMLTNGSGSGQAITCTIDSNTTQDTYGGASVCIYCRA 4012 Query 4304 HIDHPNPKGFCDLKGKYVQIPTTCANDPVGFTLRNTVCTVCGMWKGYGCSCDQLREPMMQ 4363 H+ HP GFC KGK+VQ+P NDP+ F L NTVC VCG W +GC+CD+ +Q Sbjct 4013 HVAHPTMDGFCQYKGKWVQVPIG-TNDPIRFCLENTVCKVCGCWLNHGCTCDR---TAIQ 4068 Query 4364 SADASTFLN 4372 S D S +LN Sbjct 4069 SFDNS-YLN 4076 Range 2: 1254 to 1467 Score:91.3 bits(225), Expect:3e-16, Method:Compositional matrix adjust., Identities:75/232(32%), Positives:114/232(49%), Gaps:27/232(11%) Query 980 LDDAIEAEPEPEPLPEEPVNQFVGYLKLTDNVAIKCIDIVKEAQSAKPTVIVNAANTHLK 1039 + + ++ P+ E + +E +N F+ + DNVA D+ IVNAAN +L Sbjct 1254 IKNTVDTTPKEEFVVKEKLNAFL----VHDNVAFYQGDVDTVVNGVDFDFIVNAANENLA 1309 Query 1040 HGGGVAGALNKATNGAMQNESDEYIRQNGPLTVGGSCLLSGHNLAEKCLHVVGPNLNAGE 1099 HGGG+A AL+ T G +Q S E+I G + VG ++ +L + +VVGP E Sbjct 1310 HGGGLAKALDVYTKGKLQRLSKEHIGLAGKVKVGTGVMVECDSL--RIFNVVGPRKGKHE 1367 Query 1100 DVQLLKRAYENFNS-QDVLLAPLLSAGIFGAKPLQSLKMCVEIVRTQVYLAVNDKSLYDQ 1158 LL +AY N+ Q L P+LS GIFG K SL++ +++ T+ + Sbjct 1368 R-DLLIKAYNTINNEQGTPLTPILSCGIFGIKLETSLEVLLDVCNTK-----------EV 1415 Query 1159 IVLDYLDSLKPKVE-------SPNKEEEPKLE-EPKAVQPVAEKPVDVKPKI 1202 V Y D+ KV+ + K E+PK+E +P +V VA KP V K Sbjct 1416 KVFVYTDTEVCKVKDFVSGLVNVQKVEQPKIEPKPVSVIKVAPKPYRVDGKF 1467 >RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Non-structural protein 1; Short=nsp1; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; Contains: RecName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=PL1-PRO/PL2-PRO; AltName: Full=PLP1/PLP2; AltName: Full=Papain-like proteinases 1/2; AltName: Full=p195; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; AltName: Full=Peptide HD2; Contains: RecName: Full=3C-like proteinase; Short=3CL-PRO; Short=3CLp; AltName: Full=M-PRO; AltName: Full=nsp5; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; Contains: RecName: Full=Viral protein genome-linked nsp9; AltName: Full=Non-structural protein 9; Short=nsp9; AltName: Full=RNA-capping enzyme subunit nsp9; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; Contains: RecName: Full=Non-structural protein 11; Short=nsp11; Contains: RecName: Full=RNA-directed RNA polymerase nsp12; Short=Pol; Short=RdRp; AltName: Full=nsp12; Contains: RecName: Full=Helicase; Short=Hel; AltName: Full=nsp13; Contains: RecName: Full=Exoribonuclease; Short=ExoN; AltName: Full=nsp14; Contains: RecName: Full=Uridylate-specific endoribonuclease; AltName: Full=NendoU; AltName: Full=nsp15; Contains: RecName: Full=Putative 2'-O-methyl transferase; AltName: Full=nsp16 [Feline infectious peritonitis virus (strain 79-1146)] Sequence ID: Q98VG9.2 Length: 6709 Range 1: 1904 to 4019 Score:1116 bits(2886), Expect:0.0, Method:Compositional matrix adjust., Identities:739/2222(33%), Positives:1133/2222(50%), Gaps:157/2222(7%) Query 2186 INYVKSPKFSKLFTIVMWLLLLSICLGSLTYVTAVLGVCLSSLGVPSYCDGVRELYINSS 2245 +NYV+ L+ + +LLL I L Y+ + V + L C G + Y NSS Sbjct 1904 LNYVRQLNKPALWRYIKLVLLL-IALYHFFYLFVSIPV-VHKLA----CSGSVQAYSNSS 1957 Query 2246 NVTTMDFCQGYFPCSVCLSGLDSLDSYPALETIQVTISSYKLDLTFLGLAAEWLLAYMLF 2305 V + + C C CL+ D L + L+ YK D + + L+Y +F Sbjct 1958 FVKS-EVCGNSILCKACLASYDELADFDHLQVSW----DYKSDPLWNRVIQ---LSYFIF 2009 Query 2306 TKFFYLLGLSAIMQAFFGYFASHFISNSWLMWF-------IISIVQMAPVSAMVRMYIFF 2358 F + ++ YF S ++ N WL +F + +V +S + + Sbjct 2010 LAVFG----NNYVRCLLMYFVSQYL-NLWLSYFGYVKYSWFLHVVNFESISVEFVIIVVV 2064 Query 2359 ASFYYVWKSYVHIMDGCTSSTCMMCYKRNRATRVECTTIVNGVKRSFYVYANGGRGFCKA 2418 K HI C + +C C K R TR+ +VNG ++ YV+ANG CK Sbjct 2065 FKAVLALK---HIFLPCNNPSCKTCSKIARQTRIPIQVVVNGSMKTVYVHANGTGKLCKK 2121 Query 2419 HNWNCLNCDTFCAGSTFISDEVARDLSLQFKRPINPTDQSAYVVDSVTVKNGALHLY--- 2475 HN+ C NCD++ TFI DE+ RDLS K+ + TD+S V V +G Y Sbjct 2122 HNFYCKNCDSYGFDHTFICDEIVRDLSNSIKQTVYATDRSYQEVTKVECTDGFYRFYVGE 2181 Query 2476 ------FDKAGQKTYERHPLSHFVNLDNLRANNTKGSLPINVIVFDGKSKCEESAAKSAS 2529 +D +K + L LD+ N GS ++ ++ Sbjct 2182 EFTAYDYDVKHKKYSSQEVLKTMFLLDDFIVYNPSGS--------------SLASVRNVC 2227 Query 2530 VYYSQLMCQPILLLDQALVSDVGDSTEVSVKMFDAYVDTFSATFSVPMEKLKALVATAHS 2589 VY+SQL+ +PI +++ L+ D+ S + +F+A + +F+V + + K L Sbjct 2228 VYFSQLIGRPIKIVNSELLEDL--SVDFKGALFNAKKNVIKNSFNVDVSECKNL-----E 2280 Query 2590 ELAKGVALDGVLSTFVSAARQGVVDTDVDTKDVIECLKLSHHSDIEVTGDSCNNFMLTYN 2649 E K LD STF A +H I +T S NNF + Sbjct 2281 ECYKLCNLDVTFSTFEMAINN------------------AHRFGILITDRSFNNFWPSKI 2322 Query 2650 K--VENMTPRDLGACIDCNARHINAQVAKSHNVSLVWNVKDYMSLSEQLRKQIRSAAKKN 2707 K ++ D+G C+ +A+ +NA+V S+VW +D+ +LS +K + + Sbjct 2323 KPGSSGVSAMDIGKCMTFDAKIVNAKVLTQRGKSVVWLSQDFSTLSSTAQKVLVKTFVEE 2382 Query 2708 NIPFRLTCATTRQVVNV----ITTKISLKGGKVVSTWFKLL--LKVTLLCVLAALFCYVI 2761 + F LT ++ T +S K G S +F +L LK C++ + Y + Sbjct 2383 GVNFSLTFNAVGSDEDLPYERFTESVSAKSG---SGFFDVLKQLKQLFWCLVLFITLYGL 2439 Query 2762 MPVHSLSVHDGYTNEIIGYK--AIQDGVTRDIVSTDDCFANKHAGFDSWFSQRGGSYRN- 2818 V+S++ Y + GY I++GV + + +C N + GF WF + G Sbjct 2440 CSVYSVATQ-SYIDSAEGYDYMVIKNGVVQSFDDSINCVHNTYKGFAVWFKAKHGFVPTF 2498 Query 2819 DKNCPVVAAIITREIGFI--VPGLPGTVLRALNGDFLHFLPRVFSAVGNICY--TPSKLI 2874 DK+CP+V + ++G + +P +P V AL G L F V N+CY T + + Sbjct 2499 DKSCPIVLGTVF-DLGNMRPIPDVPAYV--ALVGRSLVFAINAAFGVTNVCYDHTGAAVS 2555 Query 2875 EYSDFATSACVLAAECTIFKDAMGKPVPYCYDTNLLEGSISYSELRPDTRYVLMDGSIIQ 2934 + S F T CV + CT +G V YC L+EG+ YSEL PD Y G++++ Sbjct 2556 KNSYFDT--CVFNSACTTLT-GIGGTVVYCAKQGLVEGAKLYSELLPDYYYEHASGNMVK 2612 Query 2935 FPNTYLEGSVRVVTTFDAEYCRHGTCERSEVGVCLSTSGRWVLNNEHYRALPGVFCGVDA 2994 P +R V T YCR G C S+ G C +V + E G CG Sbjct 2613 IPAIIRSFGLRFVKTQATTYCRVGECTESQAGFCFGGDNWFVYDKEFG---DGYICGSST 2669 Query 2995 MNLIANIFTPLVQPVGALDVSASVVAGGIIAILVTCAAYYFMKFRRAFGEYNHVVAANAL 3054 + N+F + + S +++A +IA L Y +KF++ FG+ +V + Sbjct 2670 LGFFKNVFALFNSNMSVVATSGAMLANIVIACLAIAVCYGVLKFKKIFGDCTLLVVM-II 2728 Query 3055 LFLMSFTILCLAPAYSFLPGVYSIFYLYLTFYFTNDVSFLAHLQ--WFAMFSPIVPFWIT 3112 + L+ + +F VY+I Y ++ T +++ L + + + P+++ Sbjct 2729 VTLVVNNVSYFVTQNTFFMIVYAIIY----YFTTRKLAYPGVLDAGFIIAYLNMAPWYVL 2784 Query 3113 AIYVFCISLKHFHWFFSNYLKKRVMFNGVTF-STFEEAALCTFLLNKEMYLRLRSETLLP 3171 +Y+ F + +F G F +FE AA+ TF+++ Y L + T Sbjct 2785 VLYIMVFLYDSLPSLFKLKVTTN-LFEGDKFVGSFESAAMGTFVIDMRSYETLVNST--S 2841 Query 3172 LTQYNRYLALYNKYKYFSGALDTTSYREAACCHLAKALNDFSNSGADVLYQPPQTSITSA 3231 L + Y +NKYKY++G++ YR A HL KAL D+S S D+LY PP S+ S Sbjct 2842 LDRIKSYANSFNKYKYYTGSMGEADYRMACYAHLGKALMDYSVSRNDMLYTPPTVSVNST 2901 Query 3232 VLQSGFRKMAFPSGKVEGCMVQVTCGTTTLNGLWLDDTVYCPRHVVCTAEDMLNPNYDDL 3291 LQSG RKMA PSG VE C+V+V G LNGLWL D V CPRHV+ + + NY++ Sbjct 2902 -LQSGLRKMAQPSGVVEPCIVRVAYGNNVLNGLWLGDEVICPRHVIASDTSRV-INYENE 2959 Query 3292 LIRKSNHSFLVQAGNVQLRVIGHSMQNCLLRLKVDTSNPKTPKYKFVRIQPGQTFSVLAC 3351 L H+F + N L V+ + L LKV+ NP TP++KF ++PG++F++LAC Sbjct 2960 LSSVRLHNFSIAKNNAFLGVVSAKYKGVNLVLKVNQVNPNTPEHKFKSVRPGESFNILAC 3019 Query 3352 YNGSPSGVYQCAMRPNHTIKGSFLNGSCGSVGFNIDYDCVSFCYMHHMELPTGVHAGTDL 3411 Y G P VY MR TIKGSF+ G+CGSVG+ ++ + F YMHH+EL G H G++L Sbjct 3020 YEGCPGSVYGVNMRSQGTIKGSFIAGTCGSVGYVLENGTLYFVYMHHLELGNGSHVGSNL 3079 Query 3412 EGKFYGPFVDRQTAQAAGTDTTITLNVLAWLYAAVINGDRWFLNRFTTTLNDFNLVAMKY 3471 EG+ YG + D+ + Q GT+ + NV+A+LYAA+ING+RWF+ + TL +N A Sbjct 3080 EGEMYGGYEDQPSMQLEGTNVMSSDNVVAFLYAALINGERWFVTNTSMTLESYNAWAKTN 3139 Query 3472 NYEPLTQDHVDILGPLSAQTGIAVLDMCAALKELLQNGMNGRTILGSTILEDEFTPFDVV 3531 ++ + D L+A+TG +V + + L G GRTIL L DEFTP +V+ Sbjct 3140 SFTEIVS--TDAFNMLAAKTGYSVEKLLECIVRL-NKGFGGRTILSYGSLCDEFTPTEVI 3196 Query 3532 RQCSGVTFQ-GKFKKIVKGTHHWMLLTFLTSLLILVQSTQWSLFF----FVYEN-AFLPF 3585 RQ GV Q GK K I +T++ IL W FF F + N F+ Sbjct 3197 RQMYGVNLQSGKVKSI--------FYPMMTAIAILFAF--WLEFFMYTPFTWINPTFVSV 3246 Query 3586 ALGIMAVAACAMLL-VKHKHAFLCLFLLPSLATVAYFNMVYMPASWVMRIMTWLELADTS 3644 L I + + ++ +KHK F F++PS+ N+V+ ++ + +E +T+ Sbjct 3247 VLAITTLVSVLLVAGIKHKMLFFMSFVMPSVILATAHNVVW-DMTYYESLQVLVENVNTT 3305 Query 3645 LSGYRLKDCVMYASALVLLILMTAR------TVYDDAARRVWTLMNVITLVYKVYYGNSL 3698 ++ ++ +V+ ++ T R + + A ++ + N++ L+ + + Sbjct 3306 FLPVDMQGVMLALFCVVVFVICTIRFFTCKQSWFSLFATTIFVMFNIVKLLGMIGEPWTD 3365 Query 3699 DQ----AISMWALVISVTSNYSGVVTTIMFLARAIVFVCVEYYPLLFITGNTLQCIMLVY 3754 D ++M ++IS+T+ VV +A IV ++ P ++C+ ++Y Sbjct 3366 DHFLLCLVNMLTMLISLTTKDWFVVFASYKVAYYIVVYVMQ--PAFVQDFGFVKCVSIIY 3423 Query 3755 CFLGYCCCCYFGLFCLLNRYFRLTLGVYDYLVSTQEFRYMNSQGLLPPKSSIDAFKLNIK 3814 GY CCY+G+ +NR+ +T GVY + VS E +YM + L PK++ DA L+ K Sbjct 3424 MACGYLFCCYYGILYWVNRFTCMTCGVYQFTVSPAELKYMTANNLSAPKTAYDAMILSFK 3483 Query 3815 LLGIGGKPCIKVATVQSKMSDVKCTSVVLLSVLQQLRVESSSKLWAQCVQLHNDILLAKD 3874 L+GIGG IK++TVQSK++++KCT+VVLL +L ++ VES+SK W CV LHN+I L D Sbjct 3484 LMGIGGGRNIKISTVQSKLTEMKCTNVVLLGLLSKMHVESNSKEWNYCVGLHNEINLCDD 3543 Query 3875 TTEAFEKMVSLLSVLLSMQGAVDINKLCEEMLDNRATLQAIASEFSSLPSYAAYATAQEA 3934 EK+++L++ LS D++ L E +N LQ++AS +++LPS+ AY A+ Sbjct 3544 PDAVLEKLLALIAFFLSKHNTCDLSDLIESYFENTTILQSVASAYAALPSWIAYEKARAD 3603 Query 3935 YEQAVSNGDSEVVLKKLKKSLNVAKSEFDHDAAMQRKLEKMADQAMTQMYKQARSEDKRA 3994 E+A N S +LK+L K+ N+AKSEF+ +A++Q+KL+KMA+QA MYK+AR+ D+++ Sbjct 3604 LEEAKKNDVSPQLLKQLTKACNIAKSEFEREASVQKKLDKMAEQAAASMYKEARAVDRKS 3663 Query 3995 KVTSAMQTMLFTMLRKLDNDALNNIINNARDGCVPLNIIPLTTAAKLMVVVPDYGTYKNT 4054 K+ SAM ++LF ML+KLD ++N II AR+G +PL+IIP +A +L+VV P+ Sbjct 3664 KIVSAMHSLLFGMLKKLDMSSVNTIIEQARNGVLPLSIIPAASATRLIVVTPNLEVLSKV 3723 Query 4055 CDGNTFTYASALWEIQQVVDADSKIVQLSEINMDNSPNLAWPLIVTALRANSAVKLQNNE 4114 N YA A+W I +V DA+ V L E+ N N+ WPL +T R KLQNNE Sbjct 3724 RQENNVHYAGAIWSIVEVKDANGAQVHLKEVTAANELNITWPLSITCER---TTKLQNNE 3780 Query 4115 LSPVALRQMSCAAGTTQTACTDDNALAYYNNAKGGRFVLALLSDHQDLKWARFPKSDGTG 4174 + P L++ + A T + A + G F+ A ++ +LK+ ++ ++ Sbjct 3781 ILPGKLKEKAVKASATIDGDAYGSGKALMASEGGKSFIYAFIASDSNLKYVKWESNN--D 3838 Query 4175 TIYTELEPPCRFVTDTPKGPKVKYLYFIKGLNNLNRGMVLGSLAATVRLQAGNATEVPAN 4234 I ELE P RF D GP+VKYLYF+K LN L RG VLG + ATVRLQAG TE P+N Sbjct 3839 VIPIELEAPLRFYVDGVNGPEVKYLYFVKSLNTLRRGAVLGYIGATVRLQAGKPTEHPSN 3898 Query 4235 STVLSFCAFAVDPAKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPEANMDQESFGG 4294 S +L+ CAFA DPAKAY D + G QP+TNCVKML G G AIT E+N Q+S+GG Sbjct 3899 SGLLTLCAFAPDPAKAYVDAVKRGMQPVTNCVKMLSNGAGNGMAITNGVESNTQQDSYGG 3958 Query 4295 ASCCLYCRCHIDHPNPKGFCDLKGKYVQIPTTCANDPVGFTLRNTVCTVCGMWKGYGCSC 4354 AS C+YCRCH++HP G C KGK+VQ+PT DP+ F + N VC VCG W GC C Sbjct 3959 ASVCIYCRCHVEHPAIDGLCRFKGKFVQVPTG-TQDPIRFCIENEVCVVCGCWLTNGCMC 4017 Query 4355 DQ 4356 D+ Sbjct 4018 DR 4019 Range 2: 1357 to 1474 Score:57.4 bits(137), Expect:4e-06, Method:Compositional matrix adjust., Identities:39/118(33%), Positives:57/118(48%), Gaps:1/118(0%) Query 1026 KPTVIVNAANTHLKHGGGVAGALNKATNGAMQNESDEYIRQNGPLTVGGSCLLSGHNLAE 1085 +P V+VNAAN L+H GGVA A++ T G + S EY++ + + G + L Sbjct 1357 EPDVLVNAANGDLRHVGGVARAIDVFTGGKLTKRSKEYLKSSKAIAPGNAVLFENVLEHL 1416 Query 1086 KCLHVVGPNLNAGEDVQLLKRAYENFNSQD-VLLAPLLSAGIFGAKPLQSLKMCVEIV 1142 L+ VGP L Y+ D +L PL+S GIF K SL+ ++ V Sbjct 1417 SVLNAVGPRNGDSRVEGKLCNVYKAIAKCDGKILTPLISVGIFKVKLEVSLQCLLKTV 1474 >RecName: Full=Replicase polyprotein 1a; Short=pp1a; AltName: Full=ORF1a polyprotein; Contains: RecName: Full=Non-structural protein 1; Short=nsp1; AltName: Full=p9; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p87; Contains: RecName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=PL1-PRO/PL2-PRO; AltName: Full=PLP1/PLP2; AltName: Full=Papain-like proteinases 1/2; AltName: Full=p195; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; AltName: Full=Peptide HD2; Contains: RecName: Full=3C-like proteinase; Short=3CL-PRO; Short=3CLp; AltName: Full=M-PRO; AltName: Full=nsp5; AltName: Full=p34; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; AltName: Full=p5; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; AltName: Full=p23; Contains: RecName: Full=Non-structural protein 9; Short=nsp9; AltName: Full=p12; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; AltName: Full=p14; Contains: RecName: Full=Non-structural protein 11; Short=nsp11 [Porcine transmissible gastroenteritis coronavirus strain Purdue] Sequence ID: P0C6V2.1 Length: 4017 Range 1: 1921 to 4008 Score:1111 bits(2873), Expect:0.0, Method:Compositional matrix adjust., Identities:721/2191(33%), Positives:1120/2191(51%), Gaps:155/2191(7%) Query 2234 CDGVRELYINSSNVTTMDFCQGYFPCSVCLSGLDSLDSYPALETIQVTISSYKLDLTFLG 2293 C+G + Y NSS + + C C CL+ D L + + +QVT +K D + Sbjct 1921 CNGAVQAYKNSSFIKSA-VCGNSILCKACLASYDELADF---QHLQVTWD-FKSDPLWNR 1975 Query 2294 LAAEWLLAYMLFTKFFYLLGLSAIMQAFFGYFASHFISNSWLMWF-------IISIVQMA 2346 L L+Y F F + ++ F YF S ++ N WL +F + +V Sbjct 1976 LVQ---LSYFAFLAVFG----NNYVRCFLMYFVSQYL-NLWLSYFGYVEYSWFLHVVNFE 2027 Query 2347 PVSAMVRMYIFFASFYYVWKSYVHIMDGCTSSTCMMCYKRNRATRVECTTIVNGVKRSFY 2406 +SA + + K HI+ C++ +C C + R TR+ +VNG ++ Y Sbjct 2028 SISAEFVIVVIVVKAVLALK---HIVFACSNPSCKTCSRTARQTRIPIQVVVNGSMKTVY 2084 Query 2407 VYANGGRGFCKAHNWNCLNCDTFCAGSTFISDEVARDLSLQFKRPINPTDQSAYVVDSVT 2466 V+ANG FCK HN+ C NCD++ +TFI DE+ RDLS K+ + TD+S V V Sbjct 2085 VHANGTGKFCKKHNFYCKNCDSYGFENTFICDEIVRDLSNSVKQTVYATDRSHQEVTKVE 2144 Query 2467 VKNGALHLY---------FDKAGQKTYERHPLSHFVNLDNLRANNTKGSLPINVIVFDGK 2517 +G Y +D +K + L + LD+ + GS NV Sbjct 2145 CSDGFYRFYVGDEFTSYDYDVKHKKYSSQEVLKSMLLLDDFIVYSPSGSALANV------ 2198 Query 2518 SKCEESAAKSASVYYSQLMCQPILLLDQALVSDVGDSTEVSVKMFDAYVDTFSATFSVPM 2577 ++A VY+SQL+ +PI +++ L+ D+ S + +F+A + +F+V + Sbjct 2199 --------RNACVYFSQLIGKPIKIVNSDLLEDL--SVDFKGALFNAKKNVIKNSFNVDV 2248 Query 2578 EKLKALVATAHSELAKGVALDGVLSTFVSAARQGVVDTDVDTKDVIECLKLSHHSDIEVT 2637 + K L E + L+ STF A +H I +T Sbjct 2249 SECKNL-----DECYRACNLNVSFSTFEMAVNN------------------AHRFGILIT 2285 Query 2638 GDSCNNFMLTYNK--VENMTPRDLGACIDCNARHINAQVAKSHNVSLVWNVKDYMSLSEQ 2695 S NNF + K ++ D+G C+ +A+ +NA+V S+VW +D+ +LS Sbjct 2286 DRSFNNFWPSKVKPGSSGVSAMDIGKCMTSDAKIVNAKVLTQRGKSVVWLSQDFAALSST 2345 Query 2696 LRKQIRSAAKKNNIPFRLTCATTRQVVNV----ITTKISLKGGKVVSTWFKLLLKVTLLC 2751 +K + + + F LT ++ T +S K G S +F ++ ++ + Sbjct 2346 AQKVLVKTFVEEGVNFSLTFNAVGSDDDLPYERFTESVSPKSG---SGFFDVITQLKQIV 2402 Query 2752 VLAALFCYV--IMPVHSLSVHDGYTNEIIGYK--AIQDGVTRDIVSTDDCFANKHAGFDS 2807 +L +F ++ + V+S++ Y GY I++G+ + T C N + GF Sbjct 2403 ILVFVFIFICGLCSVYSVATQ-SYIESAEGYDYMVIKNGIVQPFDDTISCVHNTYKGFGD 2461 Query 2808 WFSQRGGSYRN-DKNCP-VVAAIITREIGFIVPGLPGTVLRALNGDFLHFLPRVFSAVGN 2865 WF + G K+CP VV + E +P +P V ++ G L F V N Sbjct 2462 WFKAKYGFIPTFGKSCPIVVGTVFDLENMRPIPDVPAYV--SIVGRSLVFAINAAFGVTN 2519 Query 2866 ICYTPSKLIEYSDFATSACVLAAECTIFKDAMGKPVPYCYDTNLLEGSISYSELRPDTRY 2925 +CY + D CV CT +G + YC L+EG+ YS+L PD Y Sbjct 2520 MCYDHTGNAVSKDSYFDTCVFNTACTTLT-GLGGTIVYCAKQGLVEGAKLYSDLMPDYYY 2578 Query 2926 VLMDGSIIQFPNTYLEGSVRVVTTFDAEYCRHGTCERSEVGVCLSTSGRWVLNNEHYRAL 2985 G++++ P +R V T YCR G C S+ G C +V +NE Sbjct 2579 EHASGNMVKLPAIIRGLGLRFVKTQATTYCRVGECIDSKAGFCFGGDNWFVYDNEFGN-- 2636 Query 2986 PGVFCGVDAMNLIANIFTPLVQPVGALDVSASVVAGGIIAILVTCAAYYFMKFRRAFGEY 3045 G CG + N+F + + S +++ IIA L Y +KF++ FG+ Sbjct 2637 -GYICGNSVLGFFKNVFKLFNSNMSVVATSGAMLVNIIIACLAIAMCYGVLKFKKIFGDC 2695 Query 3046 NHVVAANALLFLMSFTILCLAPAYSFLPGVYSIFYLYLTFYFTNDVSFLAHLQ--WFAMF 3103 ++ ++ L+ + +F +Y+I Y ++ T +++ L + + Sbjct 2696 TFLIVM-IIVTLVVNNVSYFVTQNTFFMIIYAIVY----YFITRKLAYPGILDAGFIIAY 2750 Query 3104 SPIVPFWITAIYVFCISLKHFHWFFSNYLKKRVMFNGVTF-STFEEAALCTFLLNKEMYL 3162 + P+++ Y+ F + +F G F FE AA+ TF+++ Y Sbjct 2751 INMAPWYVITAYILVFLYDSLPSLFKLKVSTN-LFEGDKFVGNFESAAMGTFVIDMRSYE 2809 Query 3163 RLRSETLLPLTQYNRYLALYNKYKYFSGALDTTSYREAACCHLAKALNDFSNSGADVLYQ 3222 + + T + + Y +NKYKY++G++ YR A HL KAL D+S + D+LY Sbjct 2810 TIVNST--SIARIKSYANSFNKYKYYTGSMGEADYRMACYAHLGKALMDYSVNRTDMLYT 2867 Query 3223 PPQTSITSAVLQSGFRKMAFPSGKVEGCMVQVTCGTTTLNGLWLDDTVYCPRHVVCTAED 3282 PP S+ S LQSG RKMA PSG VE C+V+V+ G LNGLWL D V CPRHV+ + Sbjct 2868 PPTVSVNST-LQSGLRKMAQPSGLVEPCIVRVSYGNNVLNGLWLGDEVICPRHVIASDTT 2926 Query 3283 MLNPNYDDLLIRKSNHSFLVQAGNVQLRVIGHSMQNCLLRLKVDTSNPKTPKYKFVRIQP 3342 + NY++ + H+F V NV L V+ + L LKV+ NP TP++KF I+ Sbjct 2927 RV-INYENEMSSVRLHNFSVSKNNVFLGVVSARYKGVNLVLKVNQVNPNTPEHKFKSIKA 2985 Query 3343 GQTFSVLACYNGSPSGVYQCAMRPNHTIKGSFLNGSCGSVGFNIDYDCVSFCYMHHMELP 3402 G++F++LACY G P VY MR TIKGSF+ G+CGSVG+ ++ + F YMHH+EL Sbjct 2986 GESFNILACYEGCPGSVYGVNMRSQGTIKGSFIAGTCGSVGYVLENGILYFVYMHHLELG 3045 Query 3403 TGVHAGTDLEGKFYGPFVDRQTAQAAGTDTTITLNVLAWLYAAVINGDRWFLNRFTTTLN 3462 G H G++ EG+ YG + D+ + Q GT+ + NV+A+LYAA+ING+RWF+ + +L Sbjct 3046 NGSHVGSNFEGEMYGGYEDQPSMQLEGTNVMSSDNVVAFLYAALINGERWFVTNTSMSLE 3105 Query 3463 DFNLVAMKYNYEPLTQDHVDILGPLSAQTGIAVLDMCAALKELLQNGMNGRTILGSTILE 3522 +N A ++ L+ D L+A+TG +V + ++ L G GRTIL L Sbjct 3106 SYNTWAKTNSFTELSS--TDAFSMLAAKTGQSVEKLLDSIVRL-NKGFGGRTILSYGSLC 3162 Query 3523 DEFTPFDVVRQCSGVTFQ-GKFKKIVKGTHHWMLLTFLTSLLILVQSTQWSLFF----FV 3577 DEFTP +V+RQ GV Q GK K + + ++T +T L W FF F Sbjct 3163 DEFTPTEVIRQMYGVNLQAGKVK-----SFFYPIMTAMTILFAF-----WLEFFMYTPFT 3212 Query 3578 YEN-AFLPFALGIMAVAACAMLL-VKHKHAFLCLFLLPSLATVAYFNMVYMPASWVMRIM 3635 + N F+ L + + + + +KHK F F+LPS+ V N+ + S+ + Sbjct 3213 WINPTFVSIVLAVTTLISTVFVSGIKHKMLFFMSFVLPSVILVTAHNL-FWDFSYYESLQ 3271 Query 3636 TWLELADTSLSGYRLKDCVMYASALVLLILMTARTVYDDAARRVWTLMNVITLVYKV--- 3692 + +E +T ++ ++ ++ + + R ++ W + V T++ Sbjct 3272 SIVENTNTMFLPVDMQGVMLTVFCFIVFVTYSVRFF---TCKQSWFSLAVTTILVIFNMV 3328 Query 3693 -YYGNSLDQ---------AISMWALVISVTSNYSGVVTTIMFLARAIVFVCVEYYPLLFI 3742 +G S + ++M +++S+T+ VV +A IV VCV P F+ Sbjct 3329 KIFGTSDEPWTENQIAFCFVNMLTMIVSLTTKDWMVVIASYRIAYYIV-VCV--MPSAFV 3385 Query 3743 TG-NTLQCIMLVYCFLGYCCCCYFGLFCLLNRYFRLTLGVYDYLVSTQEFRYMNSQGLLP 3801 + ++CI +VY GY CCY+G+ +NR+ +T GVY + VS E +YM + L Sbjct 3386 SDFGFMKCISIVYMACGYLFCCYYGILYWVNRFTCMTCGVYQFTVSAAELKYMTANNLSA 3445 Query 3802 PKSSIDAFKLNIKLLGIGGKPCIKVATVQSKMSDVKCTSVVLLSVLQQLRVESSSKLWAQ 3861 PK++ DA L+ KL+G+GGK IK++TVQSK++++KCT+VVLL +L ++ VES+SK W Sbjct 3446 PKNAYDAMILSAKLIGVGGKRNIKISTVQSKLTEMKCTNVVLLGLLSKMHVESNSKEWNY 3505 Query 3862 CVQLHNDILLAKDTTEAFEKMVSLLSVLLSMQGAVDINKLCEEMLDNRATLQAIASEFSS 3921 CV LHN+I L D EK+++L++ LS D+++L E +N LQ++AS +++ Sbjct 3506 CVGLHNEINLCDDPEIVLEKLLALIAFFLSKHNTCDLSELIESYFENTTILQSVASAYAA 3565 Query 3922 LPSYAAYATAQEAYEQAVSNGDSEVVLKKLKKSLNVAKSEFDHDAAMQRKLEKMADQAMT 3981 LPS+ A A+ E+A N S +LK+L K+ N+AKS+F+ +A++Q+KL+KMA+QA Sbjct 3566 LPSWIALEKARADLEEAKKNDVSPQILKQLTKAFNIAKSDFEREASVQKKLDKMAEQAAA 3625 Query 3982 QMYKQARSEDKRAKVTSAMQTMLFTMLRKLDNDALNNIINNARDGCVPLNIIPLTTAAKL 4041 MYK+AR+ D+++K+ SAM ++LF ML+KLD ++N II+ AR+G +PL+IIP +A +L Sbjct 3626 SMYKEARAVDRKSKIVSAMHSLLFGMLKKLDMSSVNTIIDQARNGVLPLSIIPAASATRL 3685 Query 4042 MVVVPDYGTYKNTCDGNTFTYASALWEIQQVVDADSKIVQLSEINMDNSPNLAWPLIVTA 4101 +V+ P + N YA A+W I +V DA+ V L E+ N NL WPL +T Sbjct 3686 VVITPSLEVFSKIRQENNVHYAGAIWTIVEVKDANGSHVHLKEVTAANELNLTWPLSITC 3745 Query 4102 LRANSAVKLQNNELSPVALRQMSCAAGTTQTACTDDNALAYYNNAKGGRFVLALLSDHQD 4161 R KLQNNE+ P L++ + A T + A + G F+ A ++ + Sbjct 3746 ER---TTKLQNNEIMPGKLKERAVRASATLDGEAFGSGKALMASESGKSFMYAFIASDNN 3802 Query 4162 LKWARFPKSDGTGTIYTELEPPCRFVTDTPKGPKVKYLYFIKGLNNLNRGMVLGSLAATV 4221 LK+ ++ ++ I ELE P RF D GP+VKYLYF+K LN L RG VLG + ATV Sbjct 3803 LKYVKWESNN--DIIPIELEAPLRFYVDGANGPEVKYLYFVKNLNTLRRGAVLGYIGATV 3860 Query 4222 RLQAGNATEVPANSTVLSFCAFAVDPAKAYKDYLASGGQPITNCVKMLCTHTGTGQAITV 4281 RLQAG TE P+NS++L+ CAF+ DPAKAY D + G QP+ NCVKML G G A+T Sbjct 3861 RLQAGKPTEHPSNSSLLTLCAFSPDPAKAYVDAVKRGMQPVNNCVKMLSNGAGNGMAVTN 3920 Query 4282 TPEANMDQESFGGASCCLYCRCHIDHPNPKGFCDLKGKYVQIPTTCANDPVGFTLRNTVC 4341 EAN Q+S+GGAS C+YCRCH++HP G C KGK+VQIPT DP+ F + N VC Sbjct 3921 GVEANTQQDSYGGASVCIYCRCHVEHPAIDGLCRYKGKFVQIPTG-TQDPIRFCIENEVC 3979 Query 4342 TVCGMWKGYGCSCDQLREPMMQSADASTFLN 4372 VCG W GC CD R M ++LN Sbjct 3980 VVCGCWLNNGCMCD--RTSMQSFTVDQSYLN 4008 Range 2: 1346 to 1483 Score:60.8 bits(146), Expect:4e-07, Method:Compositional matrix adjust., Identities:45/149(30%), Positives:71/149(47%), Gaps:12/149(8%) Query 1026 KPTVIVNAANTHLKHGGGVAGALNKATNGAMQNESDEYIRQNGPLTVGGSCLLSGHNLAE 1085 +P VIVNAAN LKH GGVA A++ T G + S +Y+++N + G + Sbjct 1346 EPDVIVNAANGDLKHMGGVARAIDVFTGGKLTERSKDYLKKNKSIAPGNAVFFENVIEHL 1405 Query 1086 KCLHVVGP-NLNAGEDVQLLKRAYENFNSQDVLLAPLLSAGIFGAKPLQSLKMCVEIVRT 1144 L+ VGP N ++ + +L + +L PL+S GIF + SL+ ++ Sbjct 1406 SVLNAVGPRNGDSRVEAKLCNVYKAIAKCEGKILTPLISVGIFNVRLETSLQCLLK---- 1461 Query 1145 QVYLAVNDKSLYDQIVLDYLDSLKPKVES 1173 VND+ L V Y D + +E+ Sbjct 1462 ----TVNDRGLN---VFVYTDQERQTIEN 1483 >RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Non-structural protein 1; Short=nsp1; AltName: Full=p9; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p87; Contains: RecName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=PL1-PRO/PL2-PRO; AltName: Full=PLP1/PLP2; AltName: Full=Papain-like proteinases 1/2; AltName: Full=p195; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; AltName: Full=Peptide HD2; Contains: RecName: Full=3C-like proteinase; Short=3CL-PRO; Short=3CLp; AltName: Full=M-PRO; AltName: Full=nsp5; AltName: Full=p34; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; AltName: Full=p5; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; AltName: Full=p23; Contains: RecName: Full=Viral protein genome-linked nsp9; AltName: Full=Non-structural protein 9; Short=nsp9; AltName: Full=RNA-capping enzyme subunit nsp9; AltName: Full=p12; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; AltName: Full=p14; Contains: RecName: Full=RNA-directed RNA polymerase nsp12; Short=Pol; Short=RdRp; AltName: Full=nsp12; AltName: Full=p100; Contains: RecName: Full=Helicase; Short=Hel; AltName: Full=nsp13; AltName: Full=p66; AltName: Full=p66-HEL; Contains: RecName: Full=Exoribonuclease; Short=ExoN; AltName: Full=nsp14; Contains: RecName: Full=Uridylate-specific endoribonuclease; AltName: Full=NendoU; AltName: Full=nsp15; AltName: Full=p41; Contains: RecName: Full=Putative 2'-O-methyl transferase; AltName: Full=nsp16 [Porcine transmissible gastroenteritis coronavirus strain Purdue] Sequence ID: P0C6Y5.1 Length: 6684 Range 1: 1921 to 4008 Score:1109 bits(2868), Expect:0.0, Method:Compositional matrix adjust., Identities:721/2191(33%), Positives:1120/2191(51%), Gaps:155/2191(7%) Query 2234 CDGVRELYINSSNVTTMDFCQGYFPCSVCLSGLDSLDSYPALETIQVTISSYKLDLTFLG 2293 C+G + Y NSS + + C C CL+ D L + + +QVT +K D + Sbjct 1921 CNGAVQAYKNSSFIKSA-VCGNSILCKACLASYDELADF---QHLQVTWD-FKSDPLWNR 1975 Query 2294 LAAEWLLAYMLFTKFFYLLGLSAIMQAFFGYFASHFISNSWLMWF-------IISIVQMA 2346 L L+Y F F + ++ F YF S ++ N WL +F + +V Sbjct 1976 LVQ---LSYFAFLAVFG----NNYVRCFLMYFVSQYL-NLWLSYFGYVEYSWFLHVVNFE 2027 Query 2347 PVSAMVRMYIFFASFYYVWKSYVHIMDGCTSSTCMMCYKRNRATRVECTTIVNGVKRSFY 2406 +SA + + K HI+ C++ +C C + R TR+ +VNG ++ Y Sbjct 2028 SISAEFVIVVIVVKAVLALK---HIVFACSNPSCKTCSRTARQTRIPIQVVVNGSMKTVY 2084 Query 2407 VYANGGRGFCKAHNWNCLNCDTFCAGSTFISDEVARDLSLQFKRPINPTDQSAYVVDSVT 2466 V+ANG FCK HN+ C NCD++ +TFI DE+ RDLS K+ + TD+S V V Sbjct 2085 VHANGTGKFCKKHNFYCKNCDSYGFENTFICDEIVRDLSNSVKQTVYATDRSHQEVTKVE 2144 Query 2467 VKNGALHLY---------FDKAGQKTYERHPLSHFVNLDNLRANNTKGSLPINVIVFDGK 2517 +G Y +D +K + L + LD+ + GS NV Sbjct 2145 CSDGFYRFYVGDEFTSYDYDVKHKKYSSQEVLKSMLLLDDFIVYSPSGSALANV------ 2198 Query 2518 SKCEESAAKSASVYYSQLMCQPILLLDQALVSDVGDSTEVSVKMFDAYVDTFSATFSVPM 2577 ++A VY+SQL+ +PI +++ L+ D+ S + +F+A + +F+V + Sbjct 2199 --------RNACVYFSQLIGKPIKIVNSDLLEDL--SVDFKGALFNAKKNVIKNSFNVDV 2248 Query 2578 EKLKALVATAHSELAKGVALDGVLSTFVSAARQGVVDTDVDTKDVIECLKLSHHSDIEVT 2637 + K L E + L+ STF A +H I +T Sbjct 2249 SECKNL-----DECYRACNLNVSFSTFEMAVNN------------------AHRFGILIT 2285 Query 2638 GDSCNNFMLTYNK--VENMTPRDLGACIDCNARHINAQVAKSHNVSLVWNVKDYMSLSEQ 2695 S NNF + K ++ D+G C+ +A+ +NA+V S+VW +D+ +LS Sbjct 2286 DRSFNNFWPSKVKPGSSGVSAMDIGKCMTSDAKIVNAKVLTQRGKSVVWLSQDFAALSST 2345 Query 2696 LRKQIRSAAKKNNIPFRLTCATTRQVVNV----ITTKISLKGGKVVSTWFKLLLKVTLLC 2751 +K + + + F LT ++ T +S K G S +F ++ ++ + Sbjct 2346 AQKVLVKTFVEEGVNFSLTFNAVGSDDDLPYERFTESVSPKSG---SGFFDVITQLKQIV 2402 Query 2752 VLAALFCYV--IMPVHSLSVHDGYTNEIIGYK--AIQDGVTRDIVSTDDCFANKHAGFDS 2807 +L +F ++ + V+S++ Y GY I++G+ + T C N + GF Sbjct 2403 ILVFVFIFICGLCSVYSVATQ-SYIESAEGYDYMVIKNGIVQPFDDTISCVHNTYKGFGD 2461 Query 2808 WFSQRGGSYRN-DKNCP-VVAAIITREIGFIVPGLPGTVLRALNGDFLHFLPRVFSAVGN 2865 WF + G K+CP VV + E +P +P V ++ G L F V N Sbjct 2462 WFKAKYGFIPTFGKSCPIVVGTVFDLENMRPIPDVPAYV--SIVGRSLVFAINAAFGVTN 2519 Query 2866 ICYTPSKLIEYSDFATSACVLAAECTIFKDAMGKPVPYCYDTNLLEGSISYSELRPDTRY 2925 +CY + D CV CT +G + YC L+EG+ YS+L PD Y Sbjct 2520 MCYDHTGNAVSKDSYFDTCVFNTACTTLT-GLGGTIVYCAKQGLVEGAKLYSDLMPDYYY 2578 Query 2926 VLMDGSIIQFPNTYLEGSVRVVTTFDAEYCRHGTCERSEVGVCLSTSGRWVLNNEHYRAL 2985 G++++ P +R V T YCR G C S+ G C +V +NE Sbjct 2579 EHASGNMVKLPAIIRGLGLRFVKTQATTYCRVGECIDSKAGFCFGGDNWFVYDNEFGN-- 2636 Query 2986 PGVFCGVDAMNLIANIFTPLVQPVGALDVSASVVAGGIIAILVTCAAYYFMKFRRAFGEY 3045 G CG + N+F + + S +++ IIA L Y +KF++ FG+ Sbjct 2637 -GYICGNSVLGFFKNVFKLFNSNMSVVATSGAMLVNIIIACLAIAMCYGVLKFKKIFGDC 2695 Query 3046 NHVVAANALLFLMSFTILCLAPAYSFLPGVYSIFYLYLTFYFTNDVSFLAHLQ--WFAMF 3103 ++ ++ L+ + +F +Y+I Y ++ T +++ L + + Sbjct 2696 TFLIVM-IIVTLVVNNVSYFVTQNTFFMIIYAIVY----YFITRKLAYPGILDAGFIIAY 2750 Query 3104 SPIVPFWITAIYVFCISLKHFHWFFSNYLKKRVMFNGVTF-STFEEAALCTFLLNKEMYL 3162 + P+++ Y+ F + +F G F FE AA+ TF+++ Y Sbjct 2751 INMAPWYVITAYILVFLYDSLPSLFKLKVSTN-LFEGDKFVGNFESAAMGTFVIDMRSYE 2809 Query 3163 RLRSETLLPLTQYNRYLALYNKYKYFSGALDTTSYREAACCHLAKALNDFSNSGADVLYQ 3222 + + T + + Y +NKYKY++G++ YR A HL KAL D+S + D+LY Sbjct 2810 TIVNST--SIARIKSYANSFNKYKYYTGSMGEADYRMACYAHLGKALMDYSVNRTDMLYT 2867 Query 3223 PPQTSITSAVLQSGFRKMAFPSGKVEGCMVQVTCGTTTLNGLWLDDTVYCPRHVVCTAED 3282 PP S+ S LQSG RKMA PSG VE C+V+V+ G LNGLWL D V CPRHV+ + Sbjct 2868 PPTVSVNST-LQSGLRKMAQPSGLVEPCIVRVSYGNNVLNGLWLGDEVICPRHVIASDTT 2926 Query 3283 MLNPNYDDLLIRKSNHSFLVQAGNVQLRVIGHSMQNCLLRLKVDTSNPKTPKYKFVRIQP 3342 + NY++ + H+F V NV L V+ + L LKV+ NP TP++KF I+ Sbjct 2927 RV-INYENEMSSVRLHNFSVSKNNVFLGVVSARYKGVNLVLKVNQVNPNTPEHKFKSIKA 2985 Query 3343 GQTFSVLACYNGSPSGVYQCAMRPNHTIKGSFLNGSCGSVGFNIDYDCVSFCYMHHMELP 3402 G++F++LACY G P VY MR TIKGSF+ G+CGSVG+ ++ + F YMHH+EL Sbjct 2986 GESFNILACYEGCPGSVYGVNMRSQGTIKGSFIAGTCGSVGYVLENGILYFVYMHHLELG 3045 Query 3403 TGVHAGTDLEGKFYGPFVDRQTAQAAGTDTTITLNVLAWLYAAVINGDRWFLNRFTTTLN 3462 G H G++ EG+ YG + D+ + Q GT+ + NV+A+LYAA+ING+RWF+ + +L Sbjct 3046 NGSHVGSNFEGEMYGGYEDQPSMQLEGTNVMSSDNVVAFLYAALINGERWFVTNTSMSLE 3105 Query 3463 DFNLVAMKYNYEPLTQDHVDILGPLSAQTGIAVLDMCAALKELLQNGMNGRTILGSTILE 3522 +N A ++ L+ D L+A+TG +V + ++ L G GRTIL L Sbjct 3106 SYNTWAKTNSFTELSS--TDAFSMLAAKTGQSVEKLLDSIVRL-NKGFGGRTILSYGSLC 3162 Query 3523 DEFTPFDVVRQCSGVTFQ-GKFKKIVKGTHHWMLLTFLTSLLILVQSTQWSLFF----FV 3577 DEFTP +V+RQ GV Q GK K + + ++T +T L W FF F Sbjct 3163 DEFTPTEVIRQMYGVNLQAGKVK-----SFFYPIMTAMTILFAF-----WLEFFMYTPFT 3212 Query 3578 YEN-AFLPFALGIMAVAACAMLL-VKHKHAFLCLFLLPSLATVAYFNMVYMPASWVMRIM 3635 + N F+ L + + + + +KHK F F+LPS+ V N+ + S+ + Sbjct 3213 WINPTFVSIVLAVTTLISTVFVSGIKHKMLFFMSFVLPSVILVTAHNL-FWDFSYYESLQ 3271 Query 3636 TWLELADTSLSGYRLKDCVMYASALVLLILMTARTVYDDAARRVWTLMNVITLVYKV--- 3692 + +E +T ++ ++ ++ + + R ++ W + V T++ Sbjct 3272 SIVENTNTMFLPVDMQGVMLTVFCFIVFVTYSVRFF---TCKQSWFSLAVTTILVIFNMV 3328 Query 3693 -YYGNSLDQ---------AISMWALVISVTSNYSGVVTTIMFLARAIVFVCVEYYPLLFI 3742 +G S + ++M +++S+T+ VV +A IV VCV P F+ Sbjct 3329 KIFGTSDEPWTENQIAFCFVNMLTMIVSLTTKDWMVVIASYRIAYYIV-VCV--MPSAFV 3385 Query 3743 TG-NTLQCIMLVYCFLGYCCCCYFGLFCLLNRYFRLTLGVYDYLVSTQEFRYMNSQGLLP 3801 + ++CI +VY GY CCY+G+ +NR+ +T GVY + VS E +YM + L Sbjct 3386 SDFGFMKCISIVYMACGYLFCCYYGILYWVNRFTCMTCGVYQFTVSAAELKYMTANNLSA 3445 Query 3802 PKSSIDAFKLNIKLLGIGGKPCIKVATVQSKMSDVKCTSVVLLSVLQQLRVESSSKLWAQ 3861 PK++ DA L+ KL+G+GGK IK++TVQSK++++KCT+VVLL +L ++ VES+SK W Sbjct 3446 PKNAYDAMILSAKLIGVGGKRNIKISTVQSKLTEMKCTNVVLLGLLSKMHVESNSKEWNY 3505 Query 3862 CVQLHNDILLAKDTTEAFEKMVSLLSVLLSMQGAVDINKLCEEMLDNRATLQAIASEFSS 3921 CV LHN+I L D EK+++L++ LS D+++L E +N LQ++AS +++ Sbjct 3506 CVGLHNEINLCDDPEIVLEKLLALIAFFLSKHNTCDLSELIESYFENTTILQSVASAYAA 3565 Query 3922 LPSYAAYATAQEAYEQAVSNGDSEVVLKKLKKSLNVAKSEFDHDAAMQRKLEKMADQAMT 3981 LPS+ A A+ E+A N S +LK+L K+ N+AKS+F+ +A++Q+KL+KMA+QA Sbjct 3566 LPSWIALEKARADLEEAKKNDVSPQILKQLTKAFNIAKSDFEREASVQKKLDKMAEQAAA 3625 Query 3982 QMYKQARSEDKRAKVTSAMQTMLFTMLRKLDNDALNNIINNARDGCVPLNIIPLTTAAKL 4041 MYK+AR+ D+++K+ SAM ++LF ML+KLD ++N II+ AR+G +PL+IIP +A +L Sbjct 3626 SMYKEARAVDRKSKIVSAMHSLLFGMLKKLDMSSVNTIIDQARNGVLPLSIIPAASATRL 3685 Query 4042 MVVVPDYGTYKNTCDGNTFTYASALWEIQQVVDADSKIVQLSEINMDNSPNLAWPLIVTA 4101 +V+ P + N YA A+W I +V DA+ V L E+ N NL WPL +T Sbjct 3686 VVITPSLEVFSKIRQENNVHYAGAIWTIVEVKDANGSHVHLKEVTAANELNLTWPLSITC 3745 Query 4102 LRANSAVKLQNNELSPVALRQMSCAAGTTQTACTDDNALAYYNNAKGGRFVLALLSDHQD 4161 R KLQNNE+ P L++ + A T + A + G F+ A ++ + Sbjct 3746 ER---TTKLQNNEIMPGKLKERAVRASATLDGEAFGSGKALMASESGKSFMYAFIASDNN 3802 Query 4162 LKWARFPKSDGTGTIYTELEPPCRFVTDTPKGPKVKYLYFIKGLNNLNRGMVLGSLAATV 4221 LK+ ++ ++ I ELE P RF D GP+VKYLYF+K LN L RG VLG + ATV Sbjct 3803 LKYVKWESNN--DIIPIELEAPLRFYVDGANGPEVKYLYFVKNLNTLRRGAVLGYIGATV 3860 Query 4222 RLQAGNATEVPANSTVLSFCAFAVDPAKAYKDYLASGGQPITNCVKMLCTHTGTGQAITV 4281 RLQAG TE P+NS++L+ CAF+ DPAKAY D + G QP+ NCVKML G G A+T Sbjct 3861 RLQAGKPTEHPSNSSLLTLCAFSPDPAKAYVDAVKRGMQPVNNCVKMLSNGAGNGMAVTN 3920 Query 4282 TPEANMDQESFGGASCCLYCRCHIDHPNPKGFCDLKGKYVQIPTTCANDPVGFTLRNTVC 4341 EAN Q+S+GGAS C+YCRCH++HP G C KGK+VQIPT DP+ F + N VC Sbjct 3921 GVEANTQQDSYGGASVCIYCRCHVEHPAIDGLCRYKGKFVQIPTG-TQDPIRFCIENEVC 3979 Query 4342 TVCGMWKGYGCSCDQLREPMMQSADASTFLN 4372 VCG W GC CD R M ++LN Sbjct 3980 VVCGCWLNNGCMCD--RTSMQSFTVDQSYLN 4008 Range 2: 1346 to 1483 Score:60.8 bits(146), Expect:3e-07, Method:Compositional matrix adjust., Identities:45/149(30%), Positives:71/149(47%), Gaps:12/149(8%) Query 1026 KPTVIVNAANTHLKHGGGVAGALNKATNGAMQNESDEYIRQNGPLTVGGSCLLSGHNLAE 1085 +P VIVNAAN LKH GGVA A++ T G + S +Y+++N + G + Sbjct 1346 EPDVIVNAANGDLKHMGGVARAIDVFTGGKLTERSKDYLKKNKSIAPGNAVFFENVIEHL 1405 Query 1086 KCLHVVGP-NLNAGEDVQLLKRAYENFNSQDVLLAPLLSAGIFGAKPLQSLKMCVEIVRT 1144 L+ VGP N ++ + +L + +L PL+S GIF + SL+ ++ Sbjct 1406 SVLNAVGPRNGDSRVEAKLCNVYKAIAKCEGKILTPLISVGIFNVRLETSLQCLLK---- 1461 Query 1145 QVYLAVNDKSLYDQIVLDYLDSLKPKVES 1173 VND+ L V Y D + +E+ Sbjct 1462 ----TVNDRGLN---VFVYTDQERQTIEN 1483 >RecName: Full=Replicase polyprotein 1a; Short=pp1a; AltName: Full=ORF1a polyprotein; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p87; Contains: RecName: Full=Papain-like protease; Short=PL-PRO; AltName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=p195; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; AltName: Full=Peptide HD2; AltName: Full=p41; Contains: RecName: Full=3C-like proteinase; Short=3CL-PRO; Short=3CLp; AltName: Full=Main protease; Short=Mpro; AltName: Full=Non-structural protein 5; Short=nsp5; AltName: Full=p33; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; AltName: Full=p34; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; AltName: Full=p9; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; AltName: Full=p24; Contains: RecName: Full=Non-structural protein 9; Short=nsp9; AltName: Full=p10; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; AltName: Full=p16; Contains: RecName: Full=Non-structural protein 11; Short=nsp11 [Avian infectious bronchitis virus (strain Beaudette)] Sequence ID: P0C6V3.1 Length: 3951 >RecName: Full=Replicase polyprotein 1a; Short=pp1a; AltName: Full=ORF1a polyprotein; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p87; Contains: RecName: Full=Papain-like protease; Short=PL-PRO; AltName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=p195; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; AltName: Full=Peptide HD2; AltName: Full=p41; Contains: RecName: Full=3C-like proteinase; Short=3CL-PRO; Short=3CLp; AltName: Full=Main protease; Short=Mpro; AltName: Full=Non-structural protein 5; Short=nsp5; AltName: Full=p33; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; AltName: Full=p34; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; AltName: Full=p9; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; AltName: Full=p24; Contains: RecName: Full=Non-structural protein 9; Short=nsp9; AltName: Full=p10; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; AltName: Full=p16; Contains: RecName: Full=Non-structural protein 11; Short=nsp11 [Avian infectious bronchitis virus (strain Beaudette CK)] Sequence ID: P0C6V4.1 Length: 3951 Range 1: 1799 to 3946 Score:1100 bits(2844), Expect:0.0, Method:Compositional matrix adjust., Identities:752/2246(33%), Positives:1125/2246(50%), Gaps:217/2246(9%) Query 2250 MDFCQGYFPCSVCLSGLDSLDSYPALETIQVTISSYKLDLTFLGLAAEWLLAYMLFTKFF 2309 + +C F C VCL DSL Y +++ YK + G W Y++F F Sbjct 1799 LRYCADDFICRVCLHDKDSLHLYKHAYSVE---QVYKDAAS--GFIFNWNWLYLVFLILF 1853 Query 2310 Y--LLGLSAIMQAFFGYFASHFISNS--------WLMWFIISIVQMAPVSAMVRMYIFFA 2359 + G I Y + + NS +L WF V + + F Sbjct 1854 VKPVAGFVIIC-----YCVKYLVLNSTVLQTGVCFLDWF---------VQTVFSHFNFMG 1899 Query 2360 SFYYVWKSY-----VHIMDGCTSSTCMMCYKRNRATRVECTTIVNGVKRSFYVYANGGRG 2414 + +Y W Y VH + C TC +C + R+ R E + +V G K+ +VY N G Sbjct 1900 AGFYFWLFYKIYIQVHHILYCKDVTCEVCKRVARSNRQEVSVVVGGRKQIVHVYTNSGYN 1959 Query 2415 FCKAHNWNCLNCDTFCAGSTFISDEVARDLSLQFKRPINPTDQSAYVVDSVTVKNGALHL 2474 FCK HNW C NCD + +TF+S EVA +LS + KR + PT + +VVD + + ++L Sbjct 1960 FCKRHNWYCRNCDDYGHQNTFMSPEVAGELSEKLKRHVKPTAYAYHVVDEACLVDDFVNL 2019 Query 2475 YFDKAGQ-KTYERHPLSHFVNLDNLR-ANNTKGSLPINVIVFDGKSKCEESAA------K 2526 + A K + F D L+ A K +L I DG C +A K Sbjct 2020 KYKAATPGKDSASSAVKCFSVTDFLKKAVFLKEALKCEQISNDGFIVCNTQSAHALEEAK 2079 Query 2527 SASVYYSQLMCQPILLLDQALVSDVGDSTEVSVKMFDAYVDTFSATFSVPMEKLKALVAT 2586 +A++YY+Q +C+PIL+LDQAL + VS + D S+ SV T Sbjct 2080 NAAIYYAQYLCKPILILDQALYEQLV-VEPVSKSVIDKVCSILSSIISVD---------T 2129 Query 2587 AHSELAKGVALDGVLSTFVSAARQGVVDTDVDTKD--VIECLKLSHHSDIEVTGDSCNNF 2644 A G D +LS TKD ++ H+ D++ TGD N Sbjct 2130 AALNYKAGTLRDALLSI---------------TKDEEAVDMAIFCHNHDVDYTGDGFTNV 2174 Query 2645 MLTYN-KVENMTPRDLGACIDCNARHINAQVAKSHNVSLVWNVKDYMSLSEQLRKQIRSA 2703 + +Y +TPRD G I+ +A N +V + V VW + + LS+ K + SA Sbjct 2175 IPSYGIDTGKLTPRDRGFLINADASIANLRVKNAPPV--VWKFSELIKLSDSCLKYLISA 2232 Query 2704 AKKNNIPFRLTCATTRQVVNVITTKISL--KGGKVVS-------TWFKLLLKVTLLCVLA 2754 K+ + F +T + +QV+ T K+ + K G +VS ++FK LL +L A Sbjct 2233 TVKSGVRFFITKSGAKQVIACHTQKLLVEKKAGGIVSGTFKCFKSYFKWLLIFYIL-FTA 2291 Query 2755 ALFCYVIMPVHSLSVHDGY----TNEIIGYKAIQDGVTRDIVSTDDCFANKHAGFDSWFS 2810 Y M V VH Y T + G+K I GV R+IV D CF+NK FD+++ Sbjct 2292 CCSGYYYMEVSKSFVHPMYDVNSTLHVEGFKVIDKGVLREIVPEDTCFSNKFVNFDAFW- 2350 Query 2811 QRGGSYRNDKNCPVVAAIITREIGFIVPGLPGTVLRALNG-DFLH---------FLPRVF 2860 G Y N +NCP+V A+I + G + G+PG V ++G F+H ++P F Sbjct 2351 --GRPYDNSRNCPIVTAVIDGD-GTVATGVPGFVSWVMDGVMFIHMTQTERKPWYIPTWF 2407 Query 2861 S--AVGNICYTPSKLIEYSDFATSACVLAAECTIFKDAMGKPVPYCYD-TNLLEGSISYS 2917 + VG YT +I F TS + +A C ++ A P YC++ N G++ + Sbjct 2408 NREIVG---YTQDSIITEGSFYTSIALFSARC-LYLTASNTPQLYCFNGDNDAPGALPFG 2463 Query 2918 ELRPDTRYVLMDGSIIQFPNTYLEGSVRVVTTFDAEYCRHGTCERSEVGVCLSTSGRWVL 2977 + P Y +G + P L + VV YCR CE + G C+S + +WVL Sbjct 2464 SIIPHRVYFQPNGVRLIVPQQILH-TPYVVKFVSDSYCRGSVCEYTRPGYCVSLNPQWVL 2522 Query 2978 NNEHYRALPGVFCGVDAMNLIANIFTPLVQPVGALDVSASVVAGGIIAILVTCAAYYFMK 3037 N+ Y + PGVFCG L+ ++ + V ++ + +I ++V +K Sbjct 2523 FNDEYTSKPGVFCGSTVRELMFSMVSTFFTGVNP-NIYMQLATMFLILVVVVLIFAMVIK 2581 Query 3038 FRRAFGEYNHVVAANALLFLMSFTILCLAPAYSFLPGVYSIFYLYLTFYFTNDVSFLAHL 3097 F+ F Y V L+++++ ILC+ S L + + Y Y + + + + H Sbjct 2582 FQGVFKAYATTVFITMLVWVINAFILCVHSYNSVLAVILLVLYCYASLVTSRNTVIIMHC 2641 Query 3098 QWFAMFSPIVPFWITAIYVFCISLKH---FHWFFSNYLKKRVMFNGVTF-STFEEAALCT 3153 F IVP W+ Y+ I + F W + R +++G F ++ AA T Sbjct 2642 WLVFTFGLIVPTWLACCYLGFIIYMYTPLFLWCYGTTKNTRKLYDGNEFVGNYDLAAKST 2701 Query 3154 FLLNKEMYLRLRSETLLPLTQYNRYLALYNKYKYFSGALDTTSYREAACCHLAKALNDFS 3213 F++ +++L +E ++ YL+ Y + KY+SG Y +A LA AL+ + Sbjct 2702 FVIRGSEFVKLTNEIG---DKFEAYLSAYARLKYYSGTGSEQDYLQACRAWLAYALDQYR 2758 Query 3214 NSGADVLYQPPQTSITSAVLQSGFRKMAFPSGKVEGCMVQVTCGTTTLNGLWLDDTVYCP 3273 NSG +++Y PP+ SI + LQSGF+K+ PS VE C+V V+ LNGLWL DT+YCP Sbjct 2759 NSGVEIVYTPPRYSIGVSRLQSGFKKLVSPSSAVEKCIVSVSYRGNNLNGLWLGDTIYCP 2818 Query 3274 RHVVCTAEDMLNPNYDDLLIRKSNHSFLVQAGN-VQLRVIGHSMQNCLLRLKVDTSNPKT 3332 RHV+ ++D+L +NH F V + V L V+ ++ +L L+ +N +T Sbjct 2819 RHVL---GKFSGDQWNDVLNLANNHEFEVTTQHGVTLNVVSRRLKGAVLILQTAVANAET 2875 Query 3333 PKYKFVRIQPGQTFSVLACYNGSPSGVYQCAMRPNHTIKGSFLNGSCGSVGFNIDYDCVS 3392 PKYKF++ G +F++ Y G+ G+Y MR N TI+ SFL G+CGSVGFNI+ V+ Sbjct 2876 PKYKFIKANCGDSFTIACAYGGTVVGLYPVTMRSNGTIRASFLAGACGSVGFNIEKGVVN 2935 Query 3393 FCYMHHMELPTGVHAGTDLEGKFYGPFVDRQTAQAAGTDTTITLNVLAWLYAAVINGD-- 3450 F YMHH+ELP +H GTDL G+FYG +VD + AQ D +T N++AWLYAA+I+ Sbjct 2936 FFYMHHLELPNALHTGTDLMGEFYGGYVDEEVAQRVPPDNLVTNNIVAWLYAAIISVKES 2995 Query 3451 -----RWFLNRFTTTLNDFNLVAMKYNYEPLTQDHVDILGPLSAQTGIAVLDMCAALKEL 3505 +W L T +++D+N A + P + + LSA TG+ D+C L+ + Sbjct 2996 SFSLPKW-LESTTVSVDDYNKWAGDNGFTPFSTSTA--ITKLSAITGV---DVCKLLRTI 3049 Query 3506 L--QNGMNGRTILGSTILEDEFTPFDVVRQCSGVTFQGKFKKIVKGTHHW-----MLLTF 3558 + + G ILG EDE TP V Q GV Q F V+ W +L F Sbjct 3050 MVKNSQWGGDPILGQYNFEDELTPESVFNQIGGVRLQSSF---VRKATSWFWSRCVLACF 3106 Query 3559 LTSLLILVQSTQWSLFFFVYENAFLPFALGIMAVAACAMLLVKHKHAFLCLFLLPSLAT- 3617 L L +V T L F+VY L A+ ++ VKH A++ FLLP+L T Sbjct 3107 LFVLCAIVLFTAVPLKFYVYAAVILLMAVLFIS------FTVKHVMAYMDTFLLPTLITV 3160 Query 3618 -------------------VAYFNMVYMPASWVMRIMTWLELADTSLSGYR-LKDCVMYA 3657 V + + Y P + ++ W+ L + ++ ++ C M + Sbjct 3161 IIGVCAEVPFIYNTLISQVVIFLSQWYDPVVF-DTMVPWMFLPLVLYTAFKCVQGCYMNS 3219 Query 3658 SALVLLILMTARTVYDDAARRVWTLMNVITLVYKVYYGNSLDQAISMWALVISVTSNYSG 3717 LL+L + ++T N +T + GN W L + Sbjct 3220 FNTSLLMLYQ----FVKLGFVIYTSSNTLTAYTE---GN--------WELFFELVHTTVL 3264 Query 3718 VVTTIMFLARAIVFVCVE---YYPLLFITGNTLQCIMLVYCFLGYCCCCYFGLFCLLNRY 3774 + L VF C + YY N + ++V C +G+ C CYFGL+ +N+ Sbjct 3265 ANVSSNSLIGLFVFKCAKWMLYYCNATYLNNYVLMAVMVNC-IGWLCTCYFGLYWWVNKV 3323 Query 3775 FRLTLGVYDYLVSTQEFRYMNSQGLLPPKSSIDAFKLNIKLLGIGGKPCIKVATVQSKMS 3834 F LTLG Y++ VS ++RYM + PPK+ + F NI + GIGG + +ATVQ+K+S Sbjct 3324 FGLTLGKYNFKVSVDQYRYMCLHKINPPKTVWEVFSTNILIQGIGGDRVLPIATVQAKLS 3383 Query 3835 DVKCTSVVLLSVLQQLRVESSSKLWAQCVQLHNDILLAKDTTEAFEKMVSLLSVLLSMQG 3894 DVKCT+VVL+ +L +L VE++SK+ V+LHN IL + D E + ++ +L L + Sbjct 3384 DVKCTTVVLMQLLTKLNVEANSKMHVYLVELHNKILASDDVGECMDNLLGMLITLFCIDS 3443 Query 3895 AVDINKLCEEMLDNRATLQAIASEFSSLPSYAAYATAQEAYEQAV----SNGDSEVVLKK 3950 +D+++ C+++L LQ++ EFS +PSYA Y A+ YE+ + + G ++ L Sbjct 3444 TIDLSEYCDDILKRSTVLQSVTQEFSHIPSYAEYERAKNLYEKVLVDSKNGGVTQQELAA 3503 Query 3951 LKKSLNVAKSEFDHDAAMQRKLEKMADQAMTQMYKQARSEDKRAKVTSAMQTMLFTMLRK 4010 +K+ N+AKS FD D A+Q+KL+ MA++AMT MYK+AR D+RAK+ S++ +LF+ML+K Sbjct 3504 YRKAANIAKSVFDRDLAVQKKLDSMAERAMTTMYKEARVTDRRAKLVSSLHALLFSMLKK 3563 Query 4011 LDNDALNNIINNARDGCVPLNIIPLTTAAKLMVVVPDYGTYKNTCDGNTFTYASALWEIQ 4070 +D++ LN + + A G VPL +P+ + KL +V+PD T+ +G TY++ +W I Sbjct 3564 IDSEKLNVLFDQASSGVVPLATVPIVCSNKLTLVIPDPETWVKCVEGVHVTYSTVVWNID 3623 Query 4071 QVVDADSKIVQLSEINMD-----NSPNLAWPLIVTALRANSA---VKLQNNELSPVALRQ 4122 V+DAD + + + N+AWPL V R V LQNNEL P ++ Sbjct 3624 TVIDADGTELHPTSTGSGLTYCISGANIAWPLKVNLTRNGHNKVDVVLQNNELMPHGVKT 3683 Query 4123 MSCAAGTTQTACTDDNALAYYNNAKGGRFVLALLSDHQDLKWARFPKSDGTGTIYTELEP 4182 +C AG Q C+ ++ YY N G V A+ S + +LK A F G IY +L+P Sbjct 3684 KACVAGVDQAHCSVESK-CYYTNISGNSVVAAITSSNPNLKVASFLNEAGN-QIYVDLDP 3741 Query 4183 PCRFVTDTPKGPKVKYLYFIKGLNNLNRGMVLGSLAATVRLQA-GNATEVPANSTVLSFC 4241 PC+F +V YLYFIK ++ RGMVLG+++ V LQ+ G+ TE +LS C Sbjct 3742 PCKFGMKVGVKVEVVYLYFIKNTRSIVRGMVLGAISNVVVLQSKGHETEEVDAVGILSLC 3801 Query 4242 AFAVDPAKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPEANMDQESFGGASCCLYC 4301 +FAVDPA Y Y+A+G QP+ NCVKML H G+G AIT P DQ+S+GGAS CLYC Sbjct 3802 SFAVDPADTYCKYVAAGNQPLGNCVKMLTVHNGSGFAITSKPSPTPDQDSYGGASVCLYC 3861 Query 4302 RCHIDHP----NPKGFCDLKGKYVQIPTTCANDPVGFTLRNTVCTVCGMWKGYGCSCDQL 4357 R HI HP N G C KG +VQIPTT DPVGF LRN VCTVC W GYGC CD L Sbjct 3862 RAHIAHPGSVGNLDGRCQFKGSFVQIPTT-EKDPVGFCLRNKVCTVCQCWIGYGCQCDSL 3920 Query 4358 REP---MMQSADASTF----LNGFAV 4376 R+P + A AS F LNG+ V Sbjct 3921 RQPKSSVQSVAGASDFDKNYLNGYGV 3946 Range 2: 1027 to 1148 Score:49.7 bits(117), Expect:0.001, Method:Compositional matrix adjust., Identities:39/129(30%), Positives:59/129(45%), Gaps:10/129(7%) Query 1018 IVKEAQSAKPTVIVNAANTHLKHGGGVAGALNKATNGAMQNESDEYIRQNGPLTVGGSCL 1077 I K K IVNAAN H+ HG GVA A+ ++Y++++GP + Sbjct 1027 IAKALDEFKEFCIVNAANEHMTHGSGVAKAIADFCGLDFVEYCEDYVKKHGPQQ---RLV 1083 Query 1078 LSGHNLAEKCL-HVVGPNLNAGEDVQLLKRAYENFNSQDVL--LAPLLSAGIFGAKPLQS 1134 +C+ +VVGP + L AY+N V+ + P+LS GIFG Sbjct 1084 TPSFVKGIQCVNNVVGPRHGDNNLHEKLVAAYKNVLVDGVVNYVVPVLSLGIFGV----D 1139 Query 1135 LKMCVEIVR 1143 KM ++ +R Sbjct 1140 FKMSIDAMR 1148 >RecName: Full=Replicase polyprotein 1a; Short=pp1a; AltName: Full=ORF1a polyprotein; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p87; Contains: RecName: Full=Papain-like protease; Short=PL-PRO; AltName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=p195; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; AltName: Full=Peptide HD2; AltName: Full=p41; Contains: RecName: Full=3C-like proteinase; Short=3CL-PRO; Short=3CLp; AltName: Full=Main protease; Short=Mpro; AltName: Full=Non-structural protein 5; Short=nsp5; AltName: Full=p33; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; AltName: Full=p34; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; AltName: Full=p9; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; AltName: Full=p24; Contains: RecName: Full=Non-structural protein 9; Short=nsp9; AltName: Full=p10; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; AltName: Full=p16; Contains: RecName: Full=Non-structural protein 11; Short=nsp11 [Avian infectious bronchitis virus (strain M41)] Sequence ID: P0C6V5.1 Length: 3953 Range 1: 1801 to 3948 Score:1099 bits(2842), Expect:0.0, Method:Compositional matrix adjust., Identities:754/2246(34%), Positives:1129/2246(50%), Gaps:217/2246(9%) Query 2250 MDFCQGYFPCSVCLSGLDSLDSYPALETIQVTISSYKLDLTFLGLAAEWLLAYMLFTKFF 2309 + +C G F C VCL DSL Y +++ YK + + WL Y++F F Sbjct 1801 LRYCAGDFTCRVCLHDRDSLHLYKHAYSVE---QIYKDAASGINFNWNWL--YLVFLILF 1855 Query 2310 ---------------YLLGLSAIMQAFFGYFASHFISNSWLMWFIISIVQMAPVSAMVRM 2354 YL+ S ++Q G+ L WF V + Sbjct 1856 VKPVAGFVIICYCVKYLVLSSTVLQTGVGF----------LDWF---------VKTVFTH 1896 Query 2355 YIFFASFYYVWKSY-----VHIMDGCTSSTCMMCYKRNRATRVECTTIVNGVKRSFYVYA 2409 + F + +Y W Y VH + C TC +C + R+ R E + +V G K+ +VY Sbjct 1897 FNFMGAGFYFWLFYKIYVQVHHILYCKDVTCEVCKRVARSNRQEVSVVVGGRKQIVHVYT 1956 Query 2410 NGGRGFCKAHNWNCLNCDTFCAGSTFISDEVARDLSLQFKRPINPTDQSAYVVDSVTVKN 2469 N G FCK HNW C NCD + +TF+S EVA +LS + KR + PT + +VV V + Sbjct 1957 NSGYNFCKRHNWYCRNCDDYGHQNTFMSPEVAGELSEKLKRHVKPTAYAYHVVYEACVVD 2016 Query 2470 GALHLYFDKA-GQKTYERHPLSHFVNLDNLR-ANNTKGSLPINVIVFDGKSKCEESAA-- 2525 ++L + A K + F D L+ A K +L I DG C +A Sbjct 2017 DFVNLKYKAAIPGKDNASSAVKCFSVTDFLKKAVFLKEALKCEQISNDGFIVCNTQSAHA 2076 Query 2526 ----KSASVYYSQLMCQPILLLDQALVSDVGDSTEVSVKMFDAYVDTFSATFSVPMEKLK 2581 K+A+VYY+Q +C+PIL+LDQAL + VS + D S SV Sbjct 2077 LEEAKNAAVYYAQYLCKPILILDQALYEQL-IVEPVSKSVIDKVCSILSNIISVD----- 2130 Query 2582 ALVATAHSELAKGVALDGVLSTFVSAARQGVVDTDVDTKD--VIECLKLSHHSDIEVTGD 2639 TA G D +LS TKD ++ H+ ++E TGD Sbjct 2131 ----TAALNYKAGTLRDALLSI---------------TKDEEAVDMAIFCHNHEVEYTGD 2171 Query 2640 SCNNFMLTYN-KVENMTPRDLGACIDCNARHINAQVAKSHNVSLVWNVKDYMSLSEQLRK 2698 N + +Y + +TPRD G I+ +A N +V + V VW D + LS+ K Sbjct 2172 GFTNVIPSYGMDTDKLTPRDRGFLINADASIANLRVKNAPPV--VWKFSDLIKLSDSCLK 2229 Query 2699 QIRSAAKKNNIPFRLTCATTRQVVNVITTKISL--KGGKVVSTWFKLLLK-VTLLCVLAA 2755 + SA K+ F +T + +QV++ T K+ + K G V++ FK + L V Sbjct 2230 YLISATVKSGGRFFITKSGAKQVISCHTQKLLVEKKAGGVINNTFKWFMSCFKWLFVFYI 2289 Query 2756 LFC-----YVIMPVHSLSVHDGY----TNEIIGYKAIQDGVTRDIVSTDDCFANKHAGFD 2806 LF Y M ++ VH Y T + G+K I GV R+IVS D+CF+NK FD Sbjct 2290 LFTACCLGYYYMEMNKSFVHPMYDVNSTLHVEGFKVIDKGVIREIVSEDNCFSNKFVNFD 2349 Query 2807 SWFSQRGGSYRNDKNCPVVAAIITREIGFIVPGLPGTVLRALNG-DFLH---------FL 2856 +++ G SY N+KNCP+V +I + G + G+PG V ++G F+H ++ Sbjct 2350 AFW---GKSYENNKNCPIVTVVIDGD-GTVAVGVPGFVSWVMDGVMFVHMTQTDRRPWYI 2405 Query 2857 PRVFS--AVGNICYTPSKLIEYSDFATSACVLAAECTIFKDAMGKPVPYCYD-TNLLEGS 2913 P F+ VG YT +I F TS + +A C ++ A P YC++ N G+ Sbjct 2406 PTWFNREIVG---YTQDSIITEGSFYTSIALFSARC-LYLTASNTPQLYCFNGDNDAPGA 2461 Query 2914 ISYSELRPDTRYVLMDGSIIQFPNTYLEGSVRVVTTFDAEYCRHGTCERSEVGVCLSTSG 2973 + + + P Y +G + P L + +V YCR CE ++ G C+S Sbjct 2462 LPFGSIIPHRVYFQPNGVRLIVPQQILH-TPYIVKFVSDSYCRGSVCEYTKPGYCVSLDS 2520 Query 2974 RWVLNNEHYRALPGVFCGVDAMNLIANIFTPLVQPVGALDVSASVVAGGIIAILVTCAAY 3033 +WVL N+ Y + PGVFCG L+ N+ + V ++ + +I +++ Sbjct 2521 QWVLFNDEYISKPGVFCGSTVRELMFNMVSTFFTGVNP-NIYIQLATMFLILVVIVLIFA 2579 Query 3034 YFMKFRRAFGEYNHVVAANALLFLMSFTILCLAPAYSFLPGVYSIFYLYLTFYFTNDVSF 3093 +KF+ F Y +V L+++++ +LC+ S L + + Y Y + + + + Sbjct 2580 MVIKFQGVFKAYATIVFTIMLVWVINAFVLCVHSYNSVLAVILLVLYCYASMVTSRNTAI 2639 Query 3094 LAHLQWFAMFSPIVPFWITAIYVFCISLKH---FHWFFSNYLKKRVMFNGVTF-STFEEA 3149 + H F IVP W+ Y+ I + W + R +++G F ++ A Sbjct 2640 IMHCWLVFTFGLIVPTWLACCYLGFILYMYTPLVFWCYGTTKNTRKLYDGNEFVGNYDLA 2699 Query 3150 ALCTFLLNKEMYLRLRSETLLPLTQYNRYLALYNKYKYFSGALDTTSYREAACCHLAKAL 3209 A TF++ +++L +E ++ YL+ Y + KY+SG Y +A LA AL Sbjct 2700 AKSTFVIRGTEFVKLTNEIG---DKFEAYLSAYARLKYYSGTGSEQDYLQACRAWLAYAL 2756 Query 3210 NDFSNSGADVLYQPPQTSITSAVLQSGFRKMAFPSGKVEGCMVQVTCGTTTLNGLWLDDT 3269 + + NSG +V+Y PP+ SI + LQ+GF+K+ PS VE C+V V+ LNGLWL D+ Sbjct 2757 DQYRNSGVEVVYTPPRYSIGVSRLQAGFKKLVSPSSAVEKCIVSVSYRGNNLNGLWLGDS 2816 Query 3270 VYCPRHVVCTAEDMLNPNYDDLLIRKSNHSFLVQAGN-VQLRVIGHSMQNCLLRLKVDTS 3328 +YCPRHV+ + D+L +NH F V N V L V+ ++ +L L+ + Sbjct 2817 IYCPRHVL---GKFSGDQWGDVLNLANNHEFEVVTQNGVTLNVVSRRLKGAVLILQTAVA 2873 Query 3329 NPKTPKYKFVRIQPGQTFSVLACYNGSPSGVYQCAMRPNHTIKGSFLNGSCGSVGFNIDY 3388 N +TPKYKFV+ G +F++ Y G+ G+Y MR N TI+ SFL G+CGSVGFNI+ Sbjct 2874 NAETPKYKFVKANCGDSFTIACSYGGTVIGLYPVTMRSNGTIRASFLAGACGSVGFNIEK 2933 Query 3389 DCVSFCYMHHMELPTGVHAGTDLEGKFYGPFVDRQTAQAAGTDTTITLNVLAWLYAAVIN 3448 V+F YMHH+ELP +H GTDL G+FYG +VD + AQ D +T N++AWLYAA+I+ Sbjct 2934 GVVNFFYMHHLELPNALHTGTDLMGEFYGGYVDEEVAQRVPPDNLVTNNIVAWLYAAIIS 2993 Query 3449 -------GDRWFLNRFTTTLNDFNLVAMKYNYEPLTQDHVDILGPLSAQTGIAVLDMCAA 3501 +W L T ++ D+N A + P + + LSA TG+ D+C Sbjct 2994 VKESSFSQPKW-LESTTVSIEDYNRWASDNGFTPFSTSTA--ITKLSAITGV---DVCKL 3047 Query 3502 LKELLQNGMNGRT--ILGSTILEDEFTPFDVVRQCSGVTFQGKFKKIVKGTHHW-----M 3554 L+ ++ + ILG EDE TP V Q GV Q F V+ W + Sbjct 3048 LRTIMVKSAQWGSDPILGQYNFEDELTPESVFNQVGGVRLQSSF---VRKATSWFWSRCV 3104 Query 3555 LLTFLTSLLILVQSTQWSLFFFVYENAFLPFALGIMAVAACAMLLVKHKHAFLCLFLLPS 3614 L FL L +V T L F+V+ L A+ ++ VKH A++ FLLP+ Sbjct 3105 LACFLFVLCAIVLFTAVPLKFYVHAAVILLMAVLFIS------FTVKHVMAYMDTFLLPT 3158 Query 3615 LATV-----AYFNMVY--MPASWVMRIMTWLE--LADTSLSGYRLKDCVMYASALVLLIL 3665 L TV A +Y + + V+ + W + + DT M L+ L+L Sbjct 3159 LITVIIGVCAEVPFIYNTLISQVVIFLSQWYDPVVFDT-----------MVPWMLLPLVL 3207 Query 3666 MTA----RTVYDDAAR-RVWTLMNVITLVYKVYYGNSLDQAISM--WALVISVTSNYSGV 3718 TA + Y ++ + L + L + +Y ++ A + W L + Sbjct 3208 YTAFKCVQGCYMNSFNTSLLMLYQFMKLGFVIYTSSNTLTAYTEGNWELFFELVHTIVLA 3267 Query 3719 VTTIMFLARAIVFVCVE----YYPLLFITGNTLQCIMLVYCFLGYCCCCYFGLFCLLNRY 3774 + L IVF C + Y + L +M+ +G+ C CYFGL+ +N+ Sbjct 3268 NVSSNSLIGLIVFKCAKWMLYYCNATYFNNYVLMAVMV--NGIGWLCTCYFGLYWWVNKV 3325 Query 3775 FRLTLGVYDYLVSTQEFRYMNSQGLLPPKSSIDAFKLNIKLLGIGGKPCIKVATVQSKMS 3834 F LTLG Y++ VS ++RYM + PPK+ + F NI + GIGG + +ATVQSK+S Sbjct 3326 FGLTLGKYNFKVSVDQYRYMCLHKVNPPKTVWEVFTTNILIQGIGGDRVLPIATVQSKLS 3385 Query 3835 DVKCTSVVLLSVLQQLRVESSSKLWAQCVQLHNDILLAKDTTEAFEKMVSLLSVLLSMQG 3894 DVKCT+VVL+ +L +L VE++SK+ A V+LHN IL + D E + ++ +L L + Sbjct 3386 DVKCTTVVLMQLLTKLNVEANSKMHAYLVELHNKILASDDVGECMDNLLGMLITLFCIDS 3445 Query 3895 AVDINKLCEEMLDNRATLQAIASEFSSLPSYAAYATAQEAYEQAVSN----GDSEVVLKK 3950 +D+ + C+++L LQ++ EFS +PSYA Y A+ YE+ +++ G ++ L Sbjct 3446 TIDLGEYCDDILKRSTVLQSVTQEFSHIPSYAEYERAKSIYEKVLADSKNGGVTQQELAA 3505 Query 3951 LKKSLNVAKSEFDHDAAMQRKLEKMADQAMTQMYKQARSEDKRAKVTSAMQTMLFTMLRK 4010 +K+ N+AKS FD D A+Q+KL+ MA++AMT MYK+AR D+RAK+ S++ +LF+ML+K Sbjct 3506 YRKAANIAKSVFDRDLAVQKKLDSMAERAMTTMYKEARVTDRRAKLVSSLHALLFSMLKK 3565 Query 4011 LDNDALNNIINNARDGCVPLNIIPLTTAAKLMVVVPDYGTYKNTCDGNTFTYASALWEIQ 4070 +D++ LN + + A G VPL +P+ + KL +V+PD T+ +G TY++ +W I Sbjct 3566 IDSEKLNVLFDQANSGVVPLATVPIVCSNKLTLVIPDPETWVKCVEGVHVTYSTVVWNID 3625 Query 4071 QVVDADSKIVQLSEINMD-----NSPNLAWPLIVTALRANSA---VKLQNNELSPVALRQ 4122 V DAD + + + N+AWPL V R V LQNNEL P ++ Sbjct 3626 CVTDADGTELHPTSTGSGLTYCISGDNIAWPLKVNLTRNGHNKVDVALQNNELMPHGVKT 3685 Query 4123 MSCAAGTTQTACTDDNALAYYNNAKGGRFVLALLSDHQDLKWARFPKSDGTGTIYTELEP 4182 +C AG Q C+ ++ YY + G V A+ S + +LK A F G IY +L+P Sbjct 3686 KACVAGVDQAHCSVESK-CYYTSISGSSVVAAITSSNPNLKVASFLNEAGN-QIYVDLDP 3743 Query 4183 PCRFVTDTPKGPKVKYLYFIKGLNNLNRGMVLGSLAATVRLQA-GNATEVPANSTVLSFC 4241 PC+F +V YLYFIK ++ RGMVLG+++ V LQ+ G+ TE +LS C Sbjct 3744 PCKFGMKVGDKVEVVYLYFIKNTRSIVRGMVLGAISNVVVLQSKGHETEEVDAVGILSLC 3803 Query 4242 AFAVDPAKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPEANMDQESFGGASCCLYC 4301 +FAVDPA Y Y+A+G QP+ NCVKML H G+G AIT P DQ+S+GGAS CLYC Sbjct 3804 SFAVDPADTYCKYVAAGNQPLGNCVKMLTVHNGSGFAITSKPSPTPDQDSYGGASVCLYC 3863 Query 4302 RCHIDHP----NPKGFCDLKGKYVQIPTTCANDPVGFTLRNTVCTVCGMWKGYGCSCDQL 4357 R HI HP N G C KG +VQIPTT DPVGF LRN VCTVC W GYGC CD L Sbjct 3864 RAHIAHPGGAGNLDGRCQFKGSFVQIPTT-EKDPVGFCLRNKVCTVCQCWIGYGCQCDSL 3922 Query 4358 REP---MMQSADASTF----LNGFAV 4376 R+P + A AS F LNG+ V Sbjct 3923 RQPKPSVQSVAVASGFDKNYLNGYGV 3948 Range 2: 1011 to 1150 Score:48.9 bits(115), Expect:0.002, Method:Compositional matrix adjust., Identities:43/152(28%), Positives:71/152(46%), Gaps:15/152(9%) Query 995 EEPVNQFVGYLKLTDNVAIKCIDIVKEAQSAKPTVIVNAANTHLKHGGGVAGALNKATNG 1054 E+P +F+ Y ++A+ I K K IVNAAN H+ HGGGVA A+ Sbjct 1011 EKP--KFLEYKTCVGDLAVV---IAKALDEFKEFCIVNAANEHMSHGGGVAKAIADFCGP 1065 Query 1055 AMQNESDEYIRQNGPLTVGGSCLLSGHNLAEKCL-HVVGPNLNAGEDVQLLKRAYENFNS 1113 +Y++++GP + +C+ +VVGP + L AY++ Sbjct 1066 DFVEYCADYVKKHGPQQ---KLVTPSFVKGIQCVNNVVGPRHGDSNLREKLVAAYKSVLV 1122 Query 1114 QDVL--LAPLLSAGIFGAKPLQSLKMCVEIVR 1143 V+ + P+LS+GIFG K+ ++ +R Sbjct 1123 GGVVNYVVPVLSSGIFGV----DFKISIDAMR 1150 >RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p87; Contains: RecName: Full=Papain-like protease; Short=PL-PRO; AltName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=p195; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; AltName: Full=Peptide HD2; AltName: Full=p41; Contains: RecName: Full=3C-like proteinase; Short=3CL-PRO; Short=3CLp; AltName: Full=Main protease; Short=Mpro; AltName: Full=Non-structural protein 5; Short=nsp5; AltName: Full=p33; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; AltName: Full=p34; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; AltName: Full=p9; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; AltName: Full=p24; Contains: RecName: Full=Viral protein genome-linked nsp9; AltName: Full=Non-structural protein 9; Short=nsp9; AltName: Full=RNA-capping enzyme subunit nsp9; AltName: Full=p10; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; AltName: Full=p16; Contains: RecName: Full=RNA-directed RNA polymerase nsp12; Short=Pol; Short=RdRp; AltName: Full=nsp12; AltName: Full=p100; Contains: RecName: Full=Helicase; Short=Hel; AltName: Full=nsp13; AltName: Full=p68; Contains: RecName: Full=Proofreading exoribonuclease; Short=ExoN; AltName: Full=Guanine-N7 methyltransferase; AltName: Full=Non-structural protein 14; Short=nsp14; AltName: Full=p58; Contains: RecName: Full=Uridylate-specific endoribonuclease; AltName: Full=NendoU; AltName: Full=Non-structural protein 15; Short=nsp15; AltName: Full=p39; Contains: RecName: Full=2'-O-methyl transferase; AltName: Full=Non-structural protein 16; Short=nsp16; AltName: Full=p35 [Avian infectious bronchitis virus (strain Beaudette)] Sequence ID: P0C6Y1.1 Length: 6629 Range 1: 1694 to 3936 Score:1094 bits(2829), Expect:0.0, Method:Compositional matrix adjust., Identities:768/2341(33%), Positives:1156/2341(49%), Gaps:237/2341(10%) Query 2169 IAKNSVKSVAKLCLDVCINYVK--SPKFSK-LFTIVMWLLLLSICLGSLTYVTAVLGVCL 2225 + +N S+ LC ++ + SP+F K L + + L S+ +Y T + V L Sbjct 1694 VVRNITDSIKGLCGITRGHFERKMSPQFLKTLMFFLFYFLKASVKSVVASYKTVLCKVVL 1753 Query 2226 SSLGV--------PSYCDGVRELYI-------------NSSNVTTMDFCQGYFPCSVCLS 2264 ++L + P G+R L + + +C F C VCL Sbjct 1754 ATLLIVWFVYTSNPVMFTGIRVLDFLFEGSLCGPYKDYGKDSFDVLRYCADDFICRVCLH 1813 Query 2265 GLDSLDSYPALETIQVTISSYKLDLTFLGLAAEWLLAYMLFTKFFY--LLGLSAIMQAFF 2322 DSL Y +++ YK + G W Y++F F + G I Sbjct 1814 DKDSLHLYKHAYSVE---QVYKDAAS--GFIFNWNWLYLVFLILFVKPVAGFVIIC---- 1864 Query 2323 GYFASHFISNS--------WLMWFIISIVQMAPVSAMVRMYIFFASFYYVWKSY-----V 2369 Y + + NS +L WF V + + F + +Y W Y V Sbjct 1865 -YCVKYLVLNSTVLQTGVCFLDWF---------VQTVFSHFNFMGAGFYFWLFYKIYIQV 1914 Query 2370 HIMDGCTSSTCMMCYKRNRATRVECTTIVNGVKRSFYVYANGGRGFCKAHNWNCLNCDTF 2429 H + C TC +C + R+ R E + +V G K+ +VY N G FCK HNW C NCD + Sbjct 1915 HHILYCKDVTCEVCKRVARSNRQEVSVVVGGRKQIVHVYTNSGYNFCKRHNWYCRNCDDY 1974 Query 2430 CAGSTFISDEVARDLSLQFKRPINPTDQSAYVVDSVTVKNGALHLYFDKAGQ-KTYERHP 2488 +TF+S EVA +LS + KR + PT + +VVD + + ++L + A K Sbjct 1975 GHQNTFMSPEVAGELSEKLKRHVKPTAYAYHVVDEACLVDDFVNLKYKAATPGKDSASSA 2034 Query 2489 LSHFVNLDNLR-ANNTKGSLPINVIVFDGKSKCEESAA------KSASVYYSQLMCQPIL 2541 + F D L+ A K +L I DG C +A K+A++YY+Q +C+PIL Sbjct 2035 VKCFSVTDFLKKAVFLKEALKCEQISNDGFIVCNTQSAHALEEAKNAAIYYAQYLCKPIL 2094 Query 2542 LLDQALVSDVGDSTEVSVKMFDAYVDTFSATFSVPMEKLKALVATAHSELAKGVALDGVL 2601 +LDQAL + VS + D S+ SV TA G D +L Sbjct 2095 ILDQALYEQLV-VEPVSKSVIDKVCSILSSIISVD---------TAALNYKAGTLRDALL 2144 Query 2602 STFVSAARQGVVDTDVDTKD--VIECLKLSHHSDIEVTGDSCNNFMLTYN-KVENMTPRD 2658 S TKD ++ H+ D++ TGD N + +Y +TPRD Sbjct 2145 SI---------------TKDEEAVDMAIFCHNHDVDYTGDGFTNVIPSYGIDTGKLTPRD 2189 Query 2659 LGACIDCNARHINAQVAKSHNVSLVWNVKDYMSLSEQLRKQIRSAAKKNNIPFRLTCATT 2718 G I+ +A N +V + V VW + + LS+ K + SA K+ + F +T + Sbjct 2190 RGFLINADASIANLRVKNAPPV--VWKFSELIKLSDSCLKYLISATVKSGVRFFITKSGA 2247 Query 2719 RQVVNVITTK--ISLKGGKVVS-------TWFKLLLKVTLLCVLAALFCYVIMPVHSLSV 2769 +QV+ T K + K G +VS ++FK LL +L A Y M V V Sbjct 2248 KQVIACHTQKLLVEKKAGGIVSGTFKCFKSYFKWLLIFYIL-FTACCSGYYYMEVSKSFV 2306 Query 2770 HDGY----TNEIIGYKAIQDGVTRDIVSTDDCFANKHAGFDSWFSQRGGSYRNDKNCPVV 2825 H Y T + G+K I GV R+IV D CF+NK FD+++ G Y N +NCP+V Sbjct 2307 HPMYDVNSTLHVEGFKVIDKGVLREIVPEDTCFSNKFVNFDAFW---GRPYDNSRNCPIV 2363 Query 2826 AAIITREIGFIVPGLPGTVLRALNG-DFLH---------FLPRVFSA--VGNICYTPSKL 2873 A+I + G + G+PG V ++G F+H ++P F+ VG YT + Sbjct 2364 TAVIDGD-GTVATGVPGFVSWVMDGVMFIHMTQTERKPWYIPTWFNREIVG---YTQDSI 2419 Query 2874 IEYSDFATSACVLAAECTIFKDAMGKPVPYCYD-TNLLEGSISYSELRPDTRYVLMDGSI 2932 I F TS + +A C ++ A P YC++ N G++ + + P Y +G Sbjct 2420 ITEGSFYTSIALFSARC-LYLTASNTPQLYCFNGDNDAPGALPFGSIIPHRVYFQPNGVR 2478 Query 2933 IQFPNTYLEGSVRVVTTFDAEYCRHGTCERSEVGVCLSTSGRWVLNNEHYRALPGVFCGV 2992 + P L + VV YCR CE + G C+S + +WVL N+ Y + PGVFCG Sbjct 2479 LIVPQQILH-TPYVVKFVSDSYCRGSVCEYTRPGYCVSLNPQWVLFNDEYTSKPGVFCGS 2537 Query 2993 DAMNLIANIFTPLVQPVGALDVSASVVAGGIIAILVTCAAYYFMKFRRAFGEYNHVVAAN 3052 L+ ++ + V ++ + +I ++V +KF+ F Y V Sbjct 2538 TVRELMFSMVSTFFTGVNP-NIYMQLATMFLILVVVVLIFAMVIKFQGVFKAYATTVFIT 2596 Query 3053 ALLFLMSFTILCLAPAYSFLPGVYSIFYLYLTFYFTNDVSFLAHLQWFAMFSPIVPFWIT 3112 L+++++ ILC+ S L + + Y Y + + + + H F IVP W+ Sbjct 2597 MLVWVINAFILCVHSYNSVLAVILLVLYCYASLVTSRNTVIIMHCWLVFTFGLIVPTWLA 2656 Query 3113 AIYVFCISLKH---FHWFFSNYLKKRVMFNGVTF-STFEEAALCTFLLNKEMYLRLRSET 3168 Y+ I + F W + R +++G F ++ AA TF++ +++L +E Sbjct 2657 CCYLGFIIYMYTPLFLWCYGTTKNTRKLYDGNEFVGNYDLAAKSTFVIRGSEFVKLTNEI 2716 Query 3169 LLPLTQYNRYLALYNKYKYFSGALDTTSYREAACCHLAKALNDFSNSGADVLYQPPQTSI 3228 ++ YL+ Y + KY+SG Y +A LA AL+ + NSG +++Y PP+ SI Sbjct 2717 G---DKFEAYLSAYARLKYYSGTGSEQDYLQACRAWLAYALDQYRNSGVEIVYTPPRYSI 2773 Query 3229 TSAVLQSGFRKMAFPSGKVEGCMVQVTCGTTTLNGLWLDDTVYCPRHVVCTAEDMLNPNY 3288 + LQSGF+K+ PS VE C+V V+ LNGLWL DT+YCPRHV+ + Sbjct 2774 GVSRLQSGFKKLVSPSSAVEKCIVSVSYRGNNLNGLWLGDTIYCPRHVL---GKFSGDQW 2830 Query 3289 DDLLIRKSNHSFLVQAGN-VQLRVIGHSMQNCLLRLKVDTSNPKTPKYKFVRIQPGQTFS 3347 +D+L +NH F V + V L V+ ++ +L L+ +N +TPKYKF++ G +F+ Sbjct 2831 NDVLNLANNHEFEVTTQHGVTLNVVSRRLKGAVLILQTAVANAETPKYKFIKANCGDSFT 2890 Query 3348 VLACYNGSPSGVYQCAMRPNHTIKGSFLNGSCGSVGFNIDYDCVSFCYMHHMELPTGVHA 3407 + Y G+ G+Y MR N TI+ SFL G+CGSVGFNI+ V+F YMHH+ELP +H Sbjct 2891 IACAYGGTVVGLYPVTMRSNGTIRASFLAGACGSVGFNIEKGVVNFFYMHHLELPNALHT 2950 Query 3408 GTDLEGKFYGPFVDRQTAQAAGTDTTITLNVLAWLYAAVINGD-------RWFLNRFTTT 3460 GTDL G+FYG +VD + AQ D +T N++AWLYAA+I+ +W L T + Sbjct 2951 GTDLMGEFYGGYVDEEVAQRVPPDNLVTNNIVAWLYAAIISVKESSFSLPKW-LESTTVS 3009 Query 3461 LNDFNLVAMKYNYEPLTQDHVDILGPLSAQTGIAVLDMCAALKELL--QNGMNGRTILGS 3518 ++D+N A + P + + LSA TG+ D+C L+ ++ + G ILG Sbjct 3010 VDDYNKWAGDNGFTPFSTSTA--ITKLSAITGV---DVCKLLRTIMVKNSQWGGDPILGQ 3064 Query 3519 TILEDEFTPFDVVRQCSGVTFQGKFKKIVKGTHHW-----MLLTFLTSLLILVQSTQWSL 3573 EDE TP V Q GV Q F V+ W +L FL L +V T L Sbjct 3065 YNFEDELTPESVFNQIGGVRLQSSF---VRKATSWFWSRCVLACFLFVLCAIVLFTAVPL 3121 Query 3574 FFFVYENAFLPFALGIMAVAACAMLLVKHKHAFLCLFLLPSLAT---------------- 3617 F+VY L A+ ++ VKH A++ FLLP+L T Sbjct 3122 KFYVYAAVILLMAVLFIS------FTVKHVMAYMDTFLLPTLITVIIGVCAEVPFIYNTL 3175 Query 3618 ----VAYFNMVYMPASWVMRIMTWLELADTSLSGYR-LKDCVMYASALVLLILMTARTVY 3672 V + + Y P + ++ W+ L + ++ ++ C M + LL+L + Sbjct 3176 ISQVVIFLSQWYDPVVF-DTMVPWMFLPLVLYTAFKCVQGCYMNSFNTSLLMLYQ----F 3230 Query 3673 DDAARRVWTLMNVITLVYKVYYGNSLDQAISMWALVISVTSNYSGVVTTIMFLARAIVFV 3732 ++T N +T + GN W L + + L VF Sbjct 3231 VKLGFVIYTSSNTLTAYTE---GN--------WELFFELVHTTVLANVSSNSLIGLFVFK 3279 Query 3733 CVE---YYPLLFITGNTLQCIMLVYCFLGYCCCCYFGLFCLLNRYFRLTLGVYDYLVSTQ 3789 C + YY N + ++V C +G+ C CYFGL+ +N+ F LTLG Y++ VS Sbjct 3280 CAKWMLYYCNATYLNNYVLMAVMVNC-IGWLCTCYFGLYWWVNKVFGLTLGKYNFKVSVD 3338 Query 3790 EFRYMNSQGLLPPKSSIDAFKLNIKLLGIGGKPCIKVATVQSKMSDVKCTSVVLLSVLQQ 3849 ++RYM + PPK+ + F NI + GIGG + +ATVQ+K+SDVKCT+VVL+ +L + Sbjct 3339 QYRYMCLHKINPPKTVWEVFSTNILIQGIGGDRVLPIATVQAKLSDVKCTTVVLMQLLTK 3398 Query 3850 LRVESSSKLWAQCVQLHNDILLAKDTTEAFEKMVSLLSVLLSMQGAVDINKLCEEMLDNR 3909 L VE++SK+ V+LHN IL + D E + ++ +L L + +D+++ C+++L Sbjct 3399 LNVEANSKMHVYLVELHNKILASDDVGECMDNLLGMLITLFCIDSTIDLSEYCDDILKRS 3458 Query 3910 ATLQAIASEFSSLPSYAAYATAQEAYEQAV----SNGDSEVVLKKLKKSLNVAKSEFDHD 3965 LQ++ EFS +PSYA Y A+ YE+ + + G ++ L +K+ N+AKS FD D Sbjct 3459 TVLQSVTQEFSHIPSYAEYERAKNLYEKVLVDSKNGGVTQQELAAYRKAANIAKSVFDRD 3518 Query 3966 AAMQRKLEKMADQAMTQMYKQARSEDKRAKVTSAMQTMLFTMLRKLDNDALNNIINNARD 4025 A+Q+KL+ MA++AMT MYK+AR D+RAK+ S++ +LF+ML+K+D++ LN + + A Sbjct 3519 LAVQKKLDSMAERAMTTMYKEARVTDRRAKLVSSLHALLFSMLKKIDSEKLNVLFDQASS 3578 Query 4026 GCVPLNIIPLTTAAKLMVVVPDYGTYKNTCDGNTFTYASALWEIQQVVDADSKIVQLSEI 4085 G VPL +P+ + KL +V+PD T+ +G TY++ +W I V+DAD + + Sbjct 3579 GVVPLATVPIVCSNKLTLVIPDPETWVKCVEGVHVTYSTVVWNIDTVIDADGTELHPTST 3638 Query 4086 NMD-----NSPNLAWPLIVTALRANSA---VKLQNNELSPVALRQMSCAAGTTQTACTDD 4137 + N+AWPL V R V LQNNEL P ++ +C AG Q C+ + Sbjct 3639 GSGLTYCISGANIAWPLKVNLTRNGHNKVDVVLQNNELMPHGVKTKACVAGVDQAHCSVE 3698 Query 4138 NALAYYNNAKGGRFVLALLSDHQDLKWARFPKSDGTGTIYTELEPPCRFVTDTPKGPKVK 4197 + YY N G V A+ S + +LK A F G IY +L+PPC+F +V Sbjct 3699 SK-CYYTNISGNSVVAAITSSNPNLKVASFLNEAGN-QIYVDLDPPCKFGMKVGVKVEVV 3756 Query 4198 YLYFIKGLNNLNRGMVLGSLAATVRLQA-GNATEVPANSTVLSFCAFAVDPAKAYKDYLA 4256 YLYFIK ++ RGMVLG+++ V LQ+ G+ TE +LS C+FAVDPA Y Y+A Sbjct 3757 YLYFIKNTRSIVRGMVLGAISNVVVLQSKGHETEEVDAVGILSLCSFAVDPADTYCKYVA 3816 Query 4257 SGGQPITNCVKMLCTHTGTGQAITVTPEANMDQESFGGASCCLYCRCHIDHP----NPKG 4312 +G QP+ NCVKML H G+G AIT P DQ+S+GGAS CLYCR HI HP N G Sbjct 3817 AGNQPLGNCVKMLTVHNGSGFAITSKPSPTPDQDSYGGASVCLYCRAHIAHPGSVGNLDG 3876 Query 4313 FCDLKGKYVQIPTTCANDPVGFTLRNTVCTVCGMWKGYGCSCDQLREP---MMQSADAST 4369 C KG +VQIPTT DPVGF LRN VCTVC W GYGC CD LR+P + A AS Sbjct 3877 RCQFKGSFVQIPTT-EKDPVGFCLRNKVCTVCQCWIGYGCQCDSLRQPKSSVQSVAGASD 3935 Query 4370 F 4370 F Sbjct 3936 F 3936 Range 2: 1027 to 1148 Score:49.3 bits(116), Expect:0.001, Method:Compositional matrix adjust., Identities:39/129(30%), Positives:59/129(45%), Gaps:10/129(7%) Query 1018 IVKEAQSAKPTVIVNAANTHLKHGGGVAGALNKATNGAMQNESDEYIRQNGPLTVGGSCL 1077 I K K IVNAAN H+ HG GVA A+ ++Y++++GP + Sbjct 1027 IAKALDEFKEFCIVNAANEHMTHGSGVAKAIADFCGLDFVEYCEDYVKKHGPQQ---RLV 1083 Query 1078 LSGHNLAEKCL-HVVGPNLNAGEDVQLLKRAYENFNSQDVL--LAPLLSAGIFGAKPLQS 1134 +C+ +VVGP + L AY+N V+ + P+LS GIFG Sbjct 1084 TPSFVKGIQCVNNVVGPRHGDNNLHEKLVAAYKNVLVDGVVNYVVPVLSLGIFGV----D 1139 Query 1135 LKMCVEIVR 1143 KM ++ +R Sbjct 1140 FKMSIDAMR 1148 >RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p87; Contains: RecName: Full=Papain-like protease; Short=PL-PRO; AltName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=p195; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; AltName: Full=Peptide HD2; AltName: Full=p41; Contains: RecName: Full=3C-like proteinase; Short=3CL-PRO; Short=3CLp; AltName: Full=Main protease; Short=Mpro; AltName: Full=Non-structural protein 5; Short=nsp5; AltName: Full=p33; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; AltName: Full=p34; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; AltName: Full=p9; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; AltName: Full=p24; Contains: RecName: Full=Viral protein genome-linked nsp9; AltName: Full=Non-structural protein 9; Short=nsp9; AltName: Full=RNA-capping enzyme subunit nsp9; AltName: Full=p10; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; AltName: Full=p16; Contains: RecName: Full=RNA-directed RNA polymerase nsp12; Short=Pol; Short=RdRp; AltName: Full=nsp12; AltName: Full=p100; Contains: RecName: Full=Helicase; Short=Hel; AltName: Full=nsp13; AltName: Full=p68; Contains: RecName: Full=Proofreading exoribonuclease; Short=ExoN; AltName: Full=Guanine-N7 methyltransferase; AltName: Full=Non-structural protein 14; Short=nsp14; AltName: Full=p58; Contains: RecName: Full=Uridylate-specific endoribonuclease; AltName: Full=NendoU; AltName: Full=Non-structural protein 15; Short=nsp15; AltName: Full=p39; Contains: RecName: Full=2'-O-methyl transferase; AltName: Full=Non-structural protein 16; Short=nsp16; AltName: Full=p35 [Avian infectious bronchitis virus (strain Beaudette CK)] Sequence ID: P0C6Y2.1 Length: 6629 Range 1: 1694 to 3936 Score:1094 bits(2829), Expect:0.0, Method:Compositional matrix adjust., Identities:768/2341(33%), Positives:1156/2341(49%), Gaps:237/2341(10%) Query 2169 IAKNSVKSVAKLCLDVCINYVK--SPKFSK-LFTIVMWLLLLSICLGSLTYVTAVLGVCL 2225 + +N S+ LC ++ + SP+F K L + + L S+ +Y T + V L Sbjct 1694 VVRNITDSIKGLCGITRGHFERKMSPQFLKTLMFFLFYFLKASVKSVVASYKTVLCKVVL 1753 Query 2226 SSLGV--------PSYCDGVRELYI-------------NSSNVTTMDFCQGYFPCSVCLS 2264 ++L + P G+R L + + +C F C VCL Sbjct 1754 ATLLIVWFVYTSNPVMFTGIRVLDFLFEGSLCGPYKDYGKDSFDVLRYCADDFICRVCLH 1813 Query 2265 GLDSLDSYPALETIQVTISSYKLDLTFLGLAAEWLLAYMLFTKFFY--LLGLSAIMQAFF 2322 DSL Y +++ YK + G W Y++F F + G I Sbjct 1814 DKDSLHLYKHAYSVE---QVYKDAAS--GFIFNWNWLYLVFLILFVKPVAGFVIIC---- 1864 Query 2323 GYFASHFISNS--------WLMWFIISIVQMAPVSAMVRMYIFFASFYYVWKSY-----V 2369 Y + + NS +L WF V + + F + +Y W Y V Sbjct 1865 -YCVKYLVLNSTVLQTGVCFLDWF---------VQTVFSHFNFMGAGFYFWLFYKIYIQV 1914 Query 2370 HIMDGCTSSTCMMCYKRNRATRVECTTIVNGVKRSFYVYANGGRGFCKAHNWNCLNCDTF 2429 H + C TC +C + R+ R E + +V G K+ +VY N G FCK HNW C NCD + Sbjct 1915 HHILYCKDVTCEVCKRVARSNRQEVSVVVGGRKQIVHVYTNSGYNFCKRHNWYCRNCDDY 1974 Query 2430 CAGSTFISDEVARDLSLQFKRPINPTDQSAYVVDSVTVKNGALHLYFDKAGQ-KTYERHP 2488 +TF+S EVA +LS + KR + PT + +VVD + + ++L + A K Sbjct 1975 GHQNTFMSPEVAGELSEKLKRHVKPTAYAYHVVDEACLVDDFVNLKYKAATPGKDSASSA 2034 Query 2489 LSHFVNLDNLR-ANNTKGSLPINVIVFDGKSKCEESAA------KSASVYYSQLMCQPIL 2541 + F D L+ A K +L I DG C +A K+A++YY+Q +C+PIL Sbjct 2035 VKCFSVTDFLKKAVFLKEALKCEQISNDGFIVCNTQSAHALEEAKNAAIYYAQYLCKPIL 2094 Query 2542 LLDQALVSDVGDSTEVSVKMFDAYVDTFSATFSVPMEKLKALVATAHSELAKGVALDGVL 2601 +LDQAL + VS + D S+ SV TA G D +L Sbjct 2095 ILDQALYEQLV-VEPVSKSVIDKVCSILSSIISVD---------TAALNYKAGTLRDALL 2144 Query 2602 STFVSAARQGVVDTDVDTKD--VIECLKLSHHSDIEVTGDSCNNFMLTYN-KVENMTPRD 2658 S TKD ++ H+ D++ TGD N + +Y +TPRD Sbjct 2145 SI---------------TKDEEAVDMAIFCHNHDVDYTGDGFTNVIPSYGIDTGKLTPRD 2189 Query 2659 LGACIDCNARHINAQVAKSHNVSLVWNVKDYMSLSEQLRKQIRSAAKKNNIPFRLTCATT 2718 G I+ +A N +V + V VW + + LS+ K + SA K+ + F +T + Sbjct 2190 RGFLINADASIANLRVKNAPPV--VWKFSELIKLSDSCLKYLISATVKSGVRFFITKSGA 2247 Query 2719 RQVVNVITTK--ISLKGGKVVS-------TWFKLLLKVTLLCVLAALFCYVIMPVHSLSV 2769 +QV+ T K + K G +VS ++FK LL +L A Y M V V Sbjct 2248 KQVIACHTQKLLVEKKAGGIVSGTFKCFKSYFKWLLIFYIL-FTACCSGYYYMEVSKSFV 2306 Query 2770 HDGY----TNEIIGYKAIQDGVTRDIVSTDDCFANKHAGFDSWFSQRGGSYRNDKNCPVV 2825 H Y T + G+K I GV R+IV D CF+NK FD+++ G Y N +NCP+V Sbjct 2307 HPMYDVNSTLHVEGFKVIDKGVLREIVPEDTCFSNKFVNFDAFW---GRPYDNSRNCPIV 2363 Query 2826 AAIITREIGFIVPGLPGTVLRALNG-DFLH---------FLPRVFSA--VGNICYTPSKL 2873 A+I + G + G+PG V ++G F+H ++P F+ VG YT + Sbjct 2364 TAVIDGD-GTVATGVPGFVSWVMDGVMFIHMTQTERKPWYIPTWFNREIVG---YTQDSI 2419 Query 2874 IEYSDFATSACVLAAECTIFKDAMGKPVPYCYD-TNLLEGSISYSELRPDTRYVLMDGSI 2932 I F TS + +A C ++ A P YC++ N G++ + + P Y +G Sbjct 2420 ITEGSFYTSIALFSARC-LYLTASNTPQLYCFNGDNDAPGALPFGSIIPHRVYFQPNGVR 2478 Query 2933 IQFPNTYLEGSVRVVTTFDAEYCRHGTCERSEVGVCLSTSGRWVLNNEHYRALPGVFCGV 2992 + P L + VV YCR CE + G C+S + +WVL N+ Y + PGVFCG Sbjct 2479 LIVPQQILH-TPYVVKFVSDSYCRGSVCEYTRPGYCVSLNPQWVLFNDEYTSKPGVFCGS 2537 Query 2993 DAMNLIANIFTPLVQPVGALDVSASVVAGGIIAILVTCAAYYFMKFRRAFGEYNHVVAAN 3052 L+ ++ + V ++ + +I ++V +KF+ F Y V Sbjct 2538 TVRELMFSMVSTFFTGVNP-NIYMQLATMFLILVVVVLIFAMVIKFQGVFKAYATTVFIT 2596 Query 3053 ALLFLMSFTILCLAPAYSFLPGVYSIFYLYLTFYFTNDVSFLAHLQWFAMFSPIVPFWIT 3112 L+++++ ILC+ S L + + Y Y + + + + H F IVP W+ Sbjct 2597 MLVWVINAFILCVHSYNSVLAVILLVLYCYASLVTSRNTVIIMHCWLVFTFGLIVPTWLA 2656 Query 3113 AIYVFCISLKH---FHWFFSNYLKKRVMFNGVTF-STFEEAALCTFLLNKEMYLRLRSET 3168 Y+ I + F W + R +++G F ++ AA TF++ +++L +E Sbjct 2657 CCYLGFIIYMYTPLFLWCYGTTKNTRKLYDGNEFVGNYDLAAKSTFVIRGSEFVKLTNEI 2716 Query 3169 LLPLTQYNRYLALYNKYKYFSGALDTTSYREAACCHLAKALNDFSNSGADVLYQPPQTSI 3228 ++ YL+ Y + KY+SG Y +A LA AL+ + NSG +++Y PP+ SI Sbjct 2717 G---DKFEAYLSAYARLKYYSGTGSEQDYLQACRAWLAYALDQYRNSGVEIVYTPPRYSI 2773 Query 3229 TSAVLQSGFRKMAFPSGKVEGCMVQVTCGTTTLNGLWLDDTVYCPRHVVCTAEDMLNPNY 3288 + LQSGF+K+ PS VE C+V V+ LNGLWL DT+YCPRHV+ + Sbjct 2774 GVSRLQSGFKKLVSPSSAVEKCIVSVSYRGNNLNGLWLGDTIYCPRHVL---GKFSGDQW 2830 Query 3289 DDLLIRKSNHSFLVQAGN-VQLRVIGHSMQNCLLRLKVDTSNPKTPKYKFVRIQPGQTFS 3347 +D+L +NH F V + V L V+ ++ +L L+ +N +TPKYKF++ G +F+ Sbjct 2831 NDVLNLANNHEFEVTTQHGVTLNVVSRRLKGAVLILQTAVANAETPKYKFIKANCGDSFT 2890 Query 3348 VLACYNGSPSGVYQCAMRPNHTIKGSFLNGSCGSVGFNIDYDCVSFCYMHHMELPTGVHA 3407 + Y G+ G+Y MR N TI+ SFL G+CGSVGFNI+ V+F YMHH+ELP +H Sbjct 2891 IACAYGGTVVGLYPVTMRSNGTIRASFLAGACGSVGFNIEKGVVNFFYMHHLELPNALHT 2950 Query 3408 GTDLEGKFYGPFVDRQTAQAAGTDTTITLNVLAWLYAAVINGD-------RWFLNRFTTT 3460 GTDL G+FYG +VD + AQ D +T N++AWLYAA+I+ +W L T + Sbjct 2951 GTDLMGEFYGGYVDEEVAQRVPPDNLVTNNIVAWLYAAIISVKESSFSLPKW-LESTTVS 3009 Query 3461 LNDFNLVAMKYNYEPLTQDHVDILGPLSAQTGIAVLDMCAALKELL--QNGMNGRTILGS 3518 ++D+N A + P + + LSA TG+ D+C L+ ++ + G ILG Sbjct 3010 VDDYNKWAGDNGFTPFSTSTA--ITKLSAITGV---DVCKLLRTIMVKNSQWGGDPILGQ 3064 Query 3519 TILEDEFTPFDVVRQCSGVTFQGKFKKIVKGTHHW-----MLLTFLTSLLILVQSTQWSL 3573 EDE TP V Q GV Q F V+ W +L FL L +V T L Sbjct 3065 YNFEDELTPESVFNQIGGVRLQSSF---VRKATSWFWSRCVLACFLFVLCAIVLFTAVPL 3121 Query 3574 FFFVYENAFLPFALGIMAVAACAMLLVKHKHAFLCLFLLPSLAT---------------- 3617 F+VY L A+ ++ VKH A++ FLLP+L T Sbjct 3122 KFYVYAAVILLMAVLFIS------FTVKHVMAYMDTFLLPTLITVIIGVCAEVPFIYNTL 3175 Query 3618 ----VAYFNMVYMPASWVMRIMTWLELADTSLSGYR-LKDCVMYASALVLLILMTARTVY 3672 V + + Y P + ++ W+ L + ++ ++ C M + LL+L + Sbjct 3176 ISQVVIFLSQWYDPVVF-DTMVPWMFLPLVLYTAFKCVQGCYMNSFNTSLLMLYQ----F 3230 Query 3673 DDAARRVWTLMNVITLVYKVYYGNSLDQAISMWALVISVTSNYSGVVTTIMFLARAIVFV 3732 ++T N +T + GN W L + + L VF Sbjct 3231 VKLGFVIYTSSNTLTAYTE---GN--------WELFFELVHTTVLANVSSNSLIGLFVFK 3279 Query 3733 CVE---YYPLLFITGNTLQCIMLVYCFLGYCCCCYFGLFCLLNRYFRLTLGVYDYLVSTQ 3789 C + YY N + ++V C +G+ C CYFGL+ +N+ F LTLG Y++ VS Sbjct 3280 CAKWMLYYCNATYLNNYVLMAVMVNC-IGWLCTCYFGLYWWVNKVFGLTLGKYNFKVSVD 3338 Query 3790 EFRYMNSQGLLPPKSSIDAFKLNIKLLGIGGKPCIKVATVQSKMSDVKCTSVVLLSVLQQ 3849 ++RYM + PPK+ + F NI + GIGG + +ATVQ+K+SDVKCT+VVL+ +L + Sbjct 3339 QYRYMCLHKINPPKTVWEVFSTNILIQGIGGDRVLPIATVQAKLSDVKCTTVVLMQLLTK 3398 Query 3850 LRVESSSKLWAQCVQLHNDILLAKDTTEAFEKMVSLLSVLLSMQGAVDINKLCEEMLDNR 3909 L VE++SK+ V+LHN IL + D E + ++ +L L + +D+++ C+++L Sbjct 3399 LNVEANSKMHVYLVELHNKILASDDVGECMDNLLGMLITLFCIDSTIDLSEYCDDILKRS 3458 Query 3910 ATLQAIASEFSSLPSYAAYATAQEAYEQAV----SNGDSEVVLKKLKKSLNVAKSEFDHD 3965 LQ++ EFS +PSYA Y A+ YE+ + + G ++ L +K+ N+AKS FD D Sbjct 3459 TVLQSVTQEFSHIPSYAEYERAKNLYEKVLVDSKNGGVTQQELAAYRKAANIAKSVFDRD 3518 Query 3966 AAMQRKLEKMADQAMTQMYKQARSEDKRAKVTSAMQTMLFTMLRKLDNDALNNIINNARD 4025 A+Q+KL+ MA++AMT MYK+AR D+RAK+ S++ +LF+ML+K+D++ LN + + A Sbjct 3519 LAVQKKLDSMAERAMTTMYKEARVTDRRAKLVSSLHALLFSMLKKIDSEKLNVLFDQASS 3578 Query 4026 GCVPLNIIPLTTAAKLMVVVPDYGTYKNTCDGNTFTYASALWEIQQVVDADSKIVQLSEI 4085 G VPL +P+ + KL +V+PD T+ +G TY++ +W I V+DAD + + Sbjct 3579 GVVPLATVPIVCSNKLTLVIPDPETWVKCVEGVHVTYSTVVWNIDTVIDADGTELHPTST 3638 Query 4086 NMD-----NSPNLAWPLIVTALRANSA---VKLQNNELSPVALRQMSCAAGTTQTACTDD 4137 + N+AWPL V R V LQNNEL P ++ +C AG Q C+ + Sbjct 3639 GSGLTYCISGANIAWPLKVNLTRNGHNKVDVVLQNNELMPHGVKTKACVAGVDQAHCSVE 3698 Query 4138 NALAYYNNAKGGRFVLALLSDHQDLKWARFPKSDGTGTIYTELEPPCRFVTDTPKGPKVK 4197 + YY N G V A+ S + +LK A F G IY +L+PPC+F +V Sbjct 3699 SK-CYYTNISGNSVVAAITSSNPNLKVASFLNEAGN-QIYVDLDPPCKFGMKVGVKVEVV 3756 Query 4198 YLYFIKGLNNLNRGMVLGSLAATVRLQA-GNATEVPANSTVLSFCAFAVDPAKAYKDYLA 4256 YLYFIK ++ RGMVLG+++ V LQ+ G+ TE +LS C+FAVDPA Y Y+A Sbjct 3757 YLYFIKNTRSIVRGMVLGAISNVVVLQSKGHETEEVDAVGILSLCSFAVDPADTYCKYVA 3816 Query 4257 SGGQPITNCVKMLCTHTGTGQAITVTPEANMDQESFGGASCCLYCRCHIDHP----NPKG 4312 +G QP+ NCVKML H G+G AIT P DQ+S+GGAS CLYCR HI HP N G Sbjct 3817 AGNQPLGNCVKMLTVHNGSGFAITSKPSPTPDQDSYGGASVCLYCRAHIAHPGSVGNLDG 3876 Query 4313 FCDLKGKYVQIPTTCANDPVGFTLRNTVCTVCGMWKGYGCSCDQLREP---MMQSADAST 4369 C KG +VQIPTT DPVGF LRN VCTVC W GYGC CD LR+P + A AS Sbjct 3877 RCQFKGSFVQIPTT-EKDPVGFCLRNKVCTVCQCWIGYGCQCDSLRQPKSSVQSVAGASD 3935 Query 4370 F 4370 F Sbjct 3936 F 3936 Range 2: 1027 to 1148 Score:49.3 bits(116), Expect:0.001, Method:Compositional matrix adjust., Identities:39/129(30%), Positives:59/129(45%), Gaps:10/129(7%) Query 1018 IVKEAQSAKPTVIVNAANTHLKHGGGVAGALNKATNGAMQNESDEYIRQNGPLTVGGSCL 1077 I K K IVNAAN H+ HG GVA A+ ++Y++++GP + Sbjct 1027 IAKALDEFKEFCIVNAANEHMTHGSGVAKAIADFCGLDFVEYCEDYVKKHGPQQ---RLV 1083 Query 1078 LSGHNLAEKCL-HVVGPNLNAGEDVQLLKRAYENFNSQDVL--LAPLLSAGIFGAKPLQS 1134 +C+ +VVGP + L AY+N V+ + P+LS GIFG Sbjct 1084 TPSFVKGIQCVNNVVGPRHGDNNLHEKLVAAYKNVLVDGVVNYVVPVLSLGIFGV----D 1139 Query 1135 LKMCVEIVR 1143 KM ++ +R Sbjct 1140 FKMSIDAMR 1148 >RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p87; Contains: RecName: Full=Papain-like protease; Short=PL-PRO; AltName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=p195; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; AltName: Full=Peptide HD2; AltName: Full=p41; Contains: RecName: Full=3C-like proteinase; Short=3CL-PRO; Short=3CLp; AltName: Full=Main protease; Short=Mpro; AltName: Full=Non-structural protein 5; Short=nsp5; AltName: Full=p33; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; AltName: Full=p34; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; AltName: Full=p9; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; AltName: Full=p24; Contains: RecName: Full=Viral protein genome-linked nsp9; AltName: Full=Non-structural protein 9; Short=nsp9; AltName: Full=RNA-capping enzyme subunit nsp9; AltName: Full=p10; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; AltName: Full=p16; Contains: RecName: Full=RNA-directed RNA polymerase nsp12; Short=Pol; Short=RdRp; AltName: Full=nsp12; AltName: Full=p100; Contains: RecName: Full=Helicase; Short=Hel; AltName: Full=nsp13; AltName: Full=p68; Contains: RecName: Full=Proofreading exoribonuclease; Short=ExoN; AltName: Full=Guanine-N7 methyltransferase; AltName: Full=Non-structural protein 14; Short=nsp14; AltName: Full=p58; Contains: RecName: Full=Uridylate-specific endoribonuclease; AltName: Full=NendoU; AltName: Full=Non-structural protein 15; Short=nsp15; AltName: Full=p39; Contains: RecName: Full=2'-O-methyl transferase; AltName: Full=Non-structural protein 16; Short=nsp16; AltName: Full=p35 [Avian infectious bronchitis virus (strain M41)] Sequence ID: P0C6Y3.1 Length: 6631 Range 1: 1801 to 3925 Score:1093 bits(2828), Expect:0.0, Method:Compositional matrix adjust., Identities:746/2223(34%), Positives:1118/2223(50%), Gaps:210/2223(9%) Query 2250 MDFCQGYFPCSVCLSGLDSLDSYPALETIQVTISSYKLDLTFLGLAAEWLLAYMLFTKFF 2309 + +C G F C VCL DSL Y +++ YK + + WL Y++F F Sbjct 1801 LRYCAGDFTCRVCLHDRDSLHLYKHAYSVE---QIYKDAASGINFNWNWL--YLVFLILF 1855 Query 2310 ---------------YLLGLSAIMQAFFGYFASHFISNSWLMWFIISIVQMAPVSAMVRM 2354 YL+ S ++Q G+ L WF V + Sbjct 1856 VKPVAGFVIICYCVKYLVLSSTVLQTGVGF----------LDWF---------VKTVFTH 1896 Query 2355 YIFFASFYYVWKSY-----VHIMDGCTSSTCMMCYKRNRATRVECTTIVNGVKRSFYVYA 2409 + F + +Y W Y VH + C TC +C + R+ R E + +V G K+ +VY Sbjct 1897 FNFMGAGFYFWLFYKIYVQVHHILYCKDVTCEVCKRVARSNRQEVSVVVGGRKQIVHVYT 1956 Query 2410 NGGRGFCKAHNWNCLNCDTFCAGSTFISDEVARDLSLQFKRPINPTDQSAYVVDSVTVKN 2469 N G FCK HNW C NCD + +TF+S EVA +LS + KR + PT + +VV V + Sbjct 1957 NSGYNFCKRHNWYCRNCDDYGHQNTFMSPEVAGELSEKLKRHVKPTAYAYHVVYEACVVD 2016 Query 2470 GALHLYFDKA-GQKTYERHPLSHFVNLDNLR-ANNTKGSLPINVIVFDGKSKCEESAA-- 2525 ++L + A K + F D L+ A K +L I DG C +A Sbjct 2017 DFVNLKYKAAIPGKDNASSAVKCFSVTDFLKKAVFLKEALKCEQISNDGFIVCNTQSAHA 2076 Query 2526 ----KSASVYYSQLMCQPILLLDQALVSDVGDSTEVSVKMFDAYVDTFSATFSVPMEKLK 2581 K+A+VYY+Q +C+PIL+LDQAL + VS + D S SV Sbjct 2077 LEEAKNAAVYYAQYLCKPILILDQALYEQL-IVEPVSKSVIDKVCSILSNIISVD----- 2130 Query 2582 ALVATAHSELAKGVALDGVLSTFVSAARQGVVDTDVDTKD--VIECLKLSHHSDIEVTGD 2639 TA G D +LS TKD ++ H+ ++E TGD Sbjct 2131 ----TAALNYKAGTLRDALLSI---------------TKDEEAVDMAIFCHNHEVEYTGD 2171 Query 2640 SCNNFMLTYN-KVENMTPRDLGACIDCNARHINAQVAKSHNVSLVWNVKDYMSLSEQLRK 2698 N + +Y + +TPRD G I+ +A N +V + V VW D + LS+ K Sbjct 2172 GFTNVIPSYGMDTDKLTPRDRGFLINADASIANLRVKNAPPV--VWKFSDLIKLSDSCLK 2229 Query 2699 QIRSAAKKNNIPFRLTCATTRQVVNVITTK--ISLKGGKVVSTWFKLLLK-VTLLCVLAA 2755 + SA K+ F +T + +QV++ T K + K G V++ FK + L V Sbjct 2230 YLISATVKSGGRFFITKSGAKQVISCHTQKLLVEKKAGGVINNTFKWFMSCFKWLFVFYI 2289 Query 2756 LFC-----YVIMPVHSLSVHDGY----TNEIIGYKAIQDGVTRDIVSTDDCFANKHAGFD 2806 LF Y M ++ VH Y T + G+K I GV R+IVS D+CF+NK FD Sbjct 2290 LFTACCLGYYYMEMNKSFVHPMYDVNSTLHVEGFKVIDKGVIREIVSEDNCFSNKFVNFD 2349 Query 2807 SWFSQRGGSYRNDKNCPVVAAIITREIGFIVPGLPGTVLRALNG-DFLH---------FL 2856 +++ G SY N+KNCP+V +I + G + G+PG V ++G F+H ++ Sbjct 2350 AFW---GKSYENNKNCPIVTVVIDGD-GTVAVGVPGFVSWVMDGVMFVHMTQTDRRPWYI 2405 Query 2857 PRVFSA--VGNICYTPSKLIEYSDFATSACVLAAECTIFKDAMGKPVPYCYD-TNLLEGS 2913 P F+ VG YT +I F TS + +A C ++ A P YC++ N G+ Sbjct 2406 PTWFNREIVG---YTQDSIITEGSFYTSIALFSARC-LYLTASNTPQLYCFNGDNDAPGA 2461 Query 2914 ISYSELRPDTRYVLMDGSIIQFPNTYLEGSVRVVTTFDAEYCRHGTCERSEVGVCLSTSG 2973 + + + P Y +G + P L + +V YCR CE ++ G C+S Sbjct 2462 LPFGSIIPHRVYFQPNGVRLIVPQQILH-TPYIVKFVSDSYCRGSVCEYTKPGYCVSLDS 2520 Query 2974 RWVLNNEHYRALPGVFCGVDAMNLIANIFTPLVQPVGALDVSASVVAGGIIAILVTCAAY 3033 +WVL N+ Y + PGVFCG L+ N+ + V ++ + +I +++ Sbjct 2521 QWVLFNDEYISKPGVFCGSTVRELMFNMVSTFFTGVNP-NIYIQLATMFLILVVIVLIFA 2579 Query 3034 YFMKFRRAFGEYNHVVAANALLFLMSFTILCLAPAYSFLPGVYSIFYLYLTFYFTNDVSF 3093 +KF+ F Y +V L+++++ +LC+ S L + + Y Y + + + + Sbjct 2580 MVIKFQGVFKAYATIVFTIMLVWVINAFVLCVHSYNSVLAVILLVLYCYASMVTSRNTAI 2639 Query 3094 LAHLQWFAMFSPIVPFWITAIYVFCISLKH---FHWFFSNYLKKRVMFNGVTF-STFEEA 3149 + H F IVP W+ Y+ I + W + R +++G F ++ A Sbjct 2640 IMHCWLVFTFGLIVPTWLACCYLGFILYMYTPLVFWCYGTTKNTRKLYDGNEFVGNYDLA 2699 Query 3150 ALCTFLLNKEMYLRLRSETLLPLTQYNRYLALYNKYKYFSGALDTTSYREAACCHLAKAL 3209 A TF++ +++L +E ++ YL+ Y + KY+SG Y +A LA AL Sbjct 2700 AKSTFVIRGTEFVKLTNEIG---DKFEAYLSAYARLKYYSGTGSEQDYLQACRAWLAYAL 2756 Query 3210 NDFSNSGADVLYQPPQTSITSAVLQSGFRKMAFPSGKVEGCMVQVTCGTTTLNGLWLDDT 3269 + + NSG +V+Y PP+ SI + LQ+GF+K+ PS VE C+V V+ LNGLWL D+ Sbjct 2757 DQYRNSGVEVVYTPPRYSIGVSRLQAGFKKLVSPSSAVEKCIVSVSYRGNNLNGLWLGDS 2816 Query 3270 VYCPRHVVCTAEDMLNPNYDDLLIRKSNHSFLVQAGN-VQLRVIGHSMQNCLLRLKVDTS 3328 +YCPRHV+ + D+L +NH F V N V L V+ ++ +L L+ + Sbjct 2817 IYCPRHVL---GKFSGDQWGDVLNLANNHEFEVVTQNGVTLNVVSRRLKGAVLILQTAVA 2873 Query 3329 NPKTPKYKFVRIQPGQTFSVLACYNGSPSGVYQCAMRPNHTIKGSFLNGSCGSVGFNIDY 3388 N +TPKYKFV+ G +F++ Y G+ G+Y MR N TI+ SFL G+CGSVGFNI+ Sbjct 2874 NAETPKYKFVKANCGDSFTIACSYGGTVIGLYPVTMRSNGTIRASFLAGACGSVGFNIEK 2933 Query 3389 DCVSFCYMHHMELPTGVHAGTDLEGKFYGPFVDRQTAQAAGTDTTITLNVLAWLYAAVIN 3448 V+F YMHH+ELP +H GTDL G+FYG +VD + AQ D +T N++AWLYAA+I+ Sbjct 2934 GVVNFFYMHHLELPNALHTGTDLMGEFYGGYVDEEVAQRVPPDNLVTNNIVAWLYAAIIS 2993 Query 3449 -------GDRWFLNRFTTTLNDFNLVAMKYNYEPLTQDHVDILGPLSAQTGIAVLDMCAA 3501 +W L T ++ D+N A + P + + LSA TG+ D+C Sbjct 2994 VKESSFSQPKW-LESTTVSIEDYNRWASDNGFTPFSTSTA--ITKLSAITGV---DVCKL 3047 Query 3502 LKELLQNGMNGRT--ILGSTILEDEFTPFDVVRQCSGVTFQGKFKKIVKGTHHW-----M 3554 L+ ++ + ILG EDE TP V Q GV Q F V+ W + Sbjct 3048 LRTIMVKSAQWGSDPILGQYNFEDELTPESVFNQVGGVRLQSSF---VRKATSWFWSRCV 3104 Query 3555 LLTFLTSLLILVQSTQWSLFFFVYENAFLPFALGIMAVAACAMLLVKHKHAFLCLFLLPS 3614 L FL L +V T L F+V+ L A+ ++ VKH A++ FLLP+ Sbjct 3105 LACFLFVLCAIVLFTAVPLKFYVHAAVILLMAVLFIS------FTVKHVMAYMDTFLLPT 3158 Query 3615 LATV-----AYFNMVY--MPASWVMRIMTWLE--LADTSLSGYRLKDCVMYASALVLLIL 3665 L TV A +Y + + V+ + W + + DT M L+ L+L Sbjct 3159 LITVIIGVCAEVPFIYNTLISQVVIFLSQWYDPVVFDT-----------MVPWMLLPLVL 3207 Query 3666 MTA----RTVYDDAAR-RVWTLMNVITLVYKVYYGNSLDQAISM--WALVISVTSNYSGV 3718 TA + Y ++ + L + L + +Y ++ A + W L + Sbjct 3208 YTAFKCVQGCYMNSFNTSLLMLYQFMKLGFVIYTSSNTLTAYTEGNWELFFELVHTIVLA 3267 Query 3719 VTTIMFLARAIVFVCVE----YYPLLFITGNTLQCIMLVYCFLGYCCCCYFGLFCLLNRY 3774 + L IVF C + Y + L +M+ +G+ C CYFGL+ +N+ Sbjct 3268 NVSSNSLIGLIVFKCAKWMLYYCNATYFNNYVLMAVMV--NGIGWLCTCYFGLYWWVNKV 3325 Query 3775 FRLTLGVYDYLVSTQEFRYMNSQGLLPPKSSIDAFKLNIKLLGIGGKPCIKVATVQSKMS 3834 F LTLG Y++ VS ++RYM + PPK+ + F NI + GIGG + +ATVQSK+S Sbjct 3326 FGLTLGKYNFKVSVDQYRYMCLHKVNPPKTVWEVFTTNILIQGIGGDRVLPIATVQSKLS 3385 Query 3835 DVKCTSVVLLSVLQQLRVESSSKLWAQCVQLHNDILLAKDTTEAFEKMVSLLSVLLSMQG 3894 DVKCT+VVL+ +L +L VE++SK+ A V+LHN IL + D E + ++ +L L + Sbjct 3386 DVKCTTVVLMQLLTKLNVEANSKMHAYLVELHNKILASDDVGECMDNLLGMLITLFCIDS 3445 Query 3895 AVDINKLCEEMLDNRATLQAIASEFSSLPSYAAYATAQEAYEQAVSN----GDSEVVLKK 3950 +D+ + C+++L LQ++ EFS +PSYA Y A+ YE+ +++ G ++ L Sbjct 3446 TIDLGEYCDDILKRSTVLQSVTQEFSHIPSYAEYERAKSIYEKVLADSKNGGVTQQELAA 3505 Query 3951 LKKSLNVAKSEFDHDAAMQRKLEKMADQAMTQMYKQARSEDKRAKVTSAMQTMLFTMLRK 4010 +K+ N+AKS FD D A+Q+KL+ MA++AMT MYK+AR D+RAK+ S++ +LF+ML+K Sbjct 3506 YRKAANIAKSVFDRDLAVQKKLDSMAERAMTTMYKEARVTDRRAKLVSSLHALLFSMLKK 3565 Query 4011 LDNDALNNIINNARDGCVPLNIIPLTTAAKLMVVVPDYGTYKNTCDGNTFTYASALWEIQ 4070 +D++ LN + + A G VPL +P+ + KL +V+PD T+ +G TY++ +W I Sbjct 3566 IDSEKLNVLFDQANSGVVPLATVPIVCSNKLTLVIPDPETWVKCVEGVHVTYSTVVWNID 3625 Query 4071 QVVDADSKIVQLSEINMD-----NSPNLAWPLIVTALRANSA---VKLQNNELSPVALRQ 4122 V DAD + + + N+AWPL V R V LQNNEL P ++ Sbjct 3626 CVTDADGTELHPTSTGSGLTYCISGDNIAWPLKVNLTRNGHNKVDVALQNNELMPHGVKT 3685 Query 4123 MSCAAGTTQTACTDDNALAYYNNAKGGRFVLALLSDHQDLKWARFPKSDGTGTIYTELEP 4182 +C AG Q C+ ++ YY + G V A+ S + +LK A F G IY +L+P Sbjct 3686 KACVAGVDQAHCSVESK-CYYTSISGSSVVAAITSSNPNLKVASFLNEAGN-QIYVDLDP 3743 Query 4183 PCRFVTDTPKGPKVKYLYFIKGLNNLNRGMVLGSLAATVRLQA-GNATEVPANSTVLSFC 4241 PC+F +V YLYFIK ++ RGMVLG+++ V LQ+ G+ TE +LS C Sbjct 3744 PCKFGMKVGDKVEVVYLYFIKNTRSIVRGMVLGAISNVVVLQSKGHETEEVDAVGILSLC 3803 Query 4242 AFAVDPAKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPEANMDQESFGGASCCLYC 4301 +FAVDPA Y Y+A+G QP+ NCVKML H G+G AIT P DQ+S+GGAS CLYC Sbjct 3804 SFAVDPADTYCKYVAAGNQPLGNCVKMLTVHNGSGFAITSKPSPTPDQDSYGGASVCLYC 3863 Query 4302 RCHIDHP----NPKGFCDLKGKYVQIPTTCANDPVGFTLRNTVCTVCGMWKGYGCSCDQL 4357 R HI HP N G C KG +VQIPTT DPVGF LRN VCTVC W GYGC CD L Sbjct 3864 RAHIAHPGGAGNLDGRCQFKGSFVQIPTT-EKDPVGFCLRNKVCTVCQCWIGYGCQCDSL 3922 Query 4358 REP 4360 R+P Sbjct 3923 RQP 3925 Range 2: 1011 to 1150 Score:48.5 bits(114), Expect:0.002, Method:Compositional matrix adjust., Identities:43/152(28%), Positives:71/152(46%), Gaps:15/152(9%) Query 995 EEPVNQFVGYLKLTDNVAIKCIDIVKEAQSAKPTVIVNAANTHLKHGGGVAGALNKATNG 1054 E+P +F+ Y ++A+ I K K IVNAAN H+ HGGGVA A+ Sbjct 1011 EKP--KFLEYKTCVGDLAVV---IAKALDEFKEFCIVNAANEHMSHGGGVAKAIADFCGP 1065 Query 1055 AMQNESDEYIRQNGPLTVGGSCLLSGHNLAEKCL-HVVGPNLNAGEDVQLLKRAYENFNS 1113 +Y++++GP + +C+ +VVGP + L AY++ Sbjct 1066 DFVEYCADYVKKHGPQQ---KLVTPSFVKGIQCVNNVVGPRHGDSNLREKLVAAYKSVLV 1122 Query 1114 QDVL--LAPLLSAGIFGAKPLQSLKMCVEIVR 1143 V+ + P+LS+GIFG K+ ++ +R Sbjct 1123 GGVVNYVVPVLSSGIFGV----DFKISIDAMR 1150 >RecName: Full=Uncharacterized protein PAE1111 [Pyrobaculum aerophilum str. IM2] Sequence ID: Q8ZXT3.1 Length: 182 Range 1: 25 to 129 Score:71.2 bits(173), Expect:3e-12, Method:Composition-based stats., Identities:42/106(40%), Positives:63/106(59%), Gaps:8/106(7%) Query 1030 IVNAANTHLKHGGGVAGALNKATNGAMQNESDEYIRQNGPLTVGGSCLLSGHNLAEK-CL 1088 IVNAAN++L+HGGGVAGA+ + +Q ES E++R++GP+ VG + S L K + Sbjct 25 IVNAANSYLEHGGGVAGAIVRKGGQVIQEESREWVRKHGPVPVGDVAVTSAGRLKAKYVI 84 Query 1089 HVVGPNLNAGEDVQLLKRAYEN--FNSQDVLLA----PLLSAGIFG 1128 H VGP E ++ L A +N ++++ L P +S GIFG Sbjct 85 HAVGPRCGV-EPIEKLAEAVKNALLKAEELGLVSIALPAISTGIFG 129 >RecName: Full=Uncharacterized protein Saci_1252 [Sulfolobus acidocaldarius DSM 639] Sequence ID: Q4J9D2.1 Length: 181 Range 1: 19 to 132 Score:71.2 bits(173), Expect:3e-12, Method:Composition-based stats., Identities:45/118(38%), Positives:66/118(55%), Gaps:10/118(8%) Query 1017 DIVKEAQSAKPTVIVNAANTHLKHGGGVAGALNKATNGAMQNESDEYIRQNGPLTVGGSC 1076 DI K A IVNAAN++L HGGGVA A+ ++ +Q ESDEY+R+NGP+ VG Sbjct 19 DITKVEADA----IVNAANSYLSHGGGVALAIVRSGGYIIQEESDEYVRRNGPVPVGEVA 74 Query 1077 LLSGHNL-AEKCLHVVGPNLNAGEDVQL---LKRAYENFNSQDV--LLAPLLSAGIFG 1128 + + L A +H VGP D +L ++R+ E + + + P +S GI+G Sbjct 75 VTTAGKLKARYVIHAVGPRYGIEGDDKLESAIRRSLEKADELKLSSIALPAISTGIYG 132 >RecName: Full=Uncharacterized protein SSO2899 [Saccharolobus solfataricus P2] Sequence ID: Q97UU4.1 Length: 177 Range 1: 25 to 129 Score:65.9 bits(159), Expect:2e-10, Method:Composition-based stats., Identities:42/106(40%), Positives:61/106(57%), Gaps:8/106(7%) Query 1030 IVNAANTHLKHGGGVAGALNKATNGAMQNESDEYIRQNGPLTVGGSCLLSGHNL-AEKCL 1088 IVNAAN++L+HGGGVA A+ + +Q ESDEY+++ GP+ VG + S L A+ + Sbjct 25 IVNAANSYLQHGGGVAYAIVRKGGYIIQKESDEYVKKFGPVPVGEVAVTSAGKLKAKYVI 84 Query 1089 HVVGPNLN-AGEDVQLLKRAYENFNSQDVL-----LAPLLSAGIFG 1128 H VGP GED +L +++ D L P +S GI+G Sbjct 85 HAVGPRYGIEGED-KLESAIFKSLLKADELSLSSIAMPAISTGIYG 129 >RecName: Full=Uncharacterized protein TM_0508 [Thermotoga maritima MSB8] Sequence ID: Q9WYX8.1 Length: 599 Range 1: 435 to 551 Score:70.1 bits(170), Expect:3e-10, Method:Compositional matrix adjust., Identities:47/121(39%), Positives:64/121(52%), Gaps:13/121(10%) Query 1017 DIVKEAQSAKPTVIVNAANTHLKHGGGVAGALNKATNGAMQNESDEYIRQNGPLTVGGSC 1076 DI +E A IVNAAN +LKHGGGVAGA+ +A +Q ESD +++ G + G + Sbjct 435 DITREEVDA----IVNAANEYLKHGGGVAGAIVRAGGSVIQEESDRIVQERGRVPTGEAV 490 Query 1077 LLSGHNLAEK-CLHVVGP---NLNAGEDVQLLKRAYEN-FNSQDVLLA----PLLSAGIF 1127 + S L K +H VGP + GED L K Y + ++ L P +S GIF Sbjct 491 VTSAGKLKAKYVIHTVGPVWRGGSHGEDELLYKAVYNALLRAHELKLKSISMPAISTGIF 550 Query 1128 G 1128 G Sbjct 551 G 551 >RecName: Full=Uncharacterized protein STK_23830 [Sulfurisphaera tokodaii str. 7] Sequence ID: Q96XY5.1 Length: 182 Range 1: 18 to 122 Score:65.1 bits(157), Expect:5e-10, Method:Composition-based stats., Identities:41/106(39%), Positives:61/106(57%), Gaps:8/106(7%) Query 1030 IVNAANTHLKHGGGVAGALNKATNGAMQNESDEYIRQNGPLTVGGSCLLSGHNLAEK-CL 1088 IVNAAN++L+HGGGVA A+ + +Q ES EY+R+ GP+ GG + S L K + Sbjct 18 IVNAANSYLEHGGGVARAIVEKGGYIIQKESREYVRKYGPVPTGGVAVTSAGKLKAKYVI 77 Query 1089 HVVGPNLNAGEDVQLLKRAYENF--NSQDVLLA----PLLSAGIFG 1128 H VGP E + L+ A N ++++ L+ P +S GI+G Sbjct 78 HAVGPRYGI-EGEEKLEEAIRNALRKAEELKLSSIALPAISTGIYG 122 >RecName: Full=Protein mono-ADP-ribosyltransferase PARP9; AltName: Full=ADP-ribosyltransferase diphtheria toxin-like 9; Short=ARTD9; AltName: Full=B aggressive lymphoma protein homolog; AltName: Full=Poly [ADP-ribose] polymerase 9; Short=PARP-9 [Mus musculus] Sequence ID: Q8CAS9.2 Length: 866 Range 1: 137 to 274 Score:60.1 bits(144), Expect:4e-07, Method:Compositional matrix adjust., Identities:45/142(32%), Positives:66/142(46%), Gaps:16/142(11%) Query 1030 IVNAANTHLKHGGGVAGALNKATNGAMQNESDEYIRQNGPLTVGGSCLLSGHNLA-EKCL 1088 +VNAAN +L HG G+AG+L K +Q ES I G ++VGG + L + Sbjct 137 VVNAANENLLHGSGLAGSLVKTGGFEIQEESKRIIANVGKISVGGIAITGAGRLPCHLII 196 Query 1089 HVVGPNL---NAGEDVQLLKRAYENF----NSQDVLLA----PLLSAGIFGAKPLQSLKM 1137 H VGP N+ ++LLK A N D+ + P LS+GIF L + Sbjct 197 HAVGPRWTVTNSQTAIELLKFAIRNILDYVTKYDLRIKTVAIPALSSGIFQF----PLDL 252 Query 1138 CVEIVRTQVYLAVNDKSLYDQI 1159 C I+ + L DK ++ + Sbjct 253 CTSIILETIRLYFQDKQMFGNL 274 >RecName: Full=Protein mono-ADP-ribosyltransferase PARP14; AltName: Full=ADP-ribosyltransferase diphtheria toxin-like 8; Short=ARTD8; AltName: Full=B aggressive lymphoma protein 2; AltName: Full=Poly [ADP-ribose] polymerase 14; Short=PARP-14 [Homo sapiens] Sequence ID: Q460N5.3 Length: 1801 Range 1: 818 to 937 Score:60.1 bits(144), Expect:6e-07, Method:Compositional matrix adjust., Identities:41/125(33%), Positives:64/125(51%), Gaps:16/125(12%) Query 1029 VIVNAANTHLKHGGGVAGALNKATNGAMQNESDEYIRQNGPLTVGGSCLLSGHNLA-EKC 1087 V+VNA+N LKH GG+A AL+KA +Q + D+ +++ G L G + + L Sbjct 818 VVVNASNEDLKHYGGLAAALSKAAGPELQADCDQIVKREGRLLPGNATISKAGKLPYHHV 877 Query 1088 LHVVGPNLNAGED---VQLLKRAY-------ENFNSQDVLLAPLLSAGIFGAKPLQSLKM 1137 +H VGP + E V LL+RA E + + + + P +S+G+FG L Sbjct 878 IHAVGPRWSGYEAPRCVYLLRRAVQLSLCLAEKYKYRSIAI-PAISSGVFGF----PLGR 932 Query 1138 CVEIV 1142 CVE + Sbjct 933 CVETI 937 >RecName: Full=Uncharacterized protein FN1951 [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] Sequence ID: Q8RHQ2.1 Length: 175 Range 1: 22 to 124 Score:51.6 bits(122), Expect:2e-05, Method:Composition-based stats., Identities:37/107(35%), Positives:55/107(51%), Gaps:13/107(12%) Query 1030 IVNAANTHLKHGGGVAGALNKATNGAMQNESDEYIRQNGPLTVGGSCLLSGHNLAEK-CL 1088 IVNAAN+ L+ GGGV GA+ KA + E E G G + + G+NL K + Sbjct 22 IVNAANSSLEMGGGVCGAIFKAAGSELAQECKEI----GGCNTGEAVITKGYNLPNKYII 77 Query 1089 HVVGPNLNAGEDVQLLKRA---YENF---NSQDV--LLAPLLSAGIF 1127 H VGP + GE+ + + A YE+ N + + + P +S GI+ Sbjct 78 HTVGPRYSTGENREAERLASAYYESLKLANEKGIRRIAFPSISTGIY 124 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Venezuelan equine encephalitis virus (strain Trinidad donkey)] Sequence ID: P27282.3 Length: 2493 Range 1: 1342 to 1445 Score:53.5 bits(127), Expect:6e-05, Method:Compositional matrix adjust., Identities:41/115(36%), Positives:56/115(48%), Gaps:20/115(17%) Query 1024 SAKPTVIVNAANTHLKHGGGVAGALNKATNGAMQNESDEYIRQNGPLTVGGSCLLSGHNL 1083 +A VI+NAAN+ + GGGV GAL K + + P+ VG + L+ G Sbjct 1342 TATEGVIINAANSKGQPGGGVCGALYKKFPESFDLQ---------PIEVGKARLVKG--A 1390 Query 1084 AEKCLHVVGPNLNAGEDVQ---LLKRAYE------NFNSQDVLLAPLLSAGIFGA 1129 A+ +H VGPN N +V+ L AYE N N+ + PLLS GIF Sbjct 1391 AKHIIHAVGPNFNKVSEVEGDKQLAEAYESIAKIVNDNNYKSVAIPLLSTGIFSG 1445 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Venezuelan equine encephalitis virus (strain P676)] Sequence ID: P36328.2 Length: 2493 Range 1: 1342 to 1445 Score:53.5 bits(127), Expect:6e-05, Method:Compositional matrix adjust., Identities:41/115(36%), Positives:56/115(48%), Gaps:20/115(17%) Query 1024 SAKPTVIVNAANTHLKHGGGVAGALNKATNGAMQNESDEYIRQNGPLTVGGSCLLSGHNL 1083 +A VI+NAAN+ + GGGV GAL K + + P+ VG + L+ G Sbjct 1342 TATEGVIINAANSKGQPGGGVCGALYKKFPESFDLQ---------PIEVGKARLVKG--A 1390 Query 1084 AEKCLHVVGPNLNAGEDVQ---LLKRAYE------NFNSQDVLLAPLLSAGIFGA 1129 A+ +H VGPN N +V+ L AYE N N+ + PLLS GIF Sbjct 1391 AKHIIHAVGPNFNKVSEVEGDKQLAEAYESIAKIVNDNNYKSVAIPLLSTGIFSG 1445 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Venezuelan equine encephalitis virus (strain 3880)] Sequence ID: P36327.3 Length: 2485 Range 1: 1342 to 1445 Score:52.8 bits(125), Expect:8e-05, Method:Compositional matrix adjust., Identities:40/115(35%), Positives:56/115(48%), Gaps:20/115(17%) Query 1024 SAKPTVIVNAANTHLKHGGGVAGALNKATNGAMQNESDEYIRQNGPLTVGGSCLLSGHNL 1083 +A VI+NAAN+ + GGGV GAL K + + P+ VG + L+ G Sbjct 1342 TATEGVIINAANSKGQPGGGVCGALYKKFPESFDLQ---------PIEVGKARLVKG--A 1390 Query 1084 AEKCLHVVGPNLNAGEDVQ---LLKRAYE------NFNSQDVLLAPLLSAGIFGA 1129 A+ +H VGPN N +++ L AYE N N+ + PLLS GIF Sbjct 1391 AKHIIHAVGPNFNKVSEIEGDKQLAEAYESIAKIVNDNNYKSVAIPLLSTGIFSG 1445 >RecName: Full=Protein mono-ADP-ribosyltransferase PARP9; AltName: Full=ADP-ribosyltransferase diphtheria toxin-like 9; Short=ARTD9; AltName: Full=B aggressive lymphoma protein; AltName: Full=Poly [ADP-ribose] polymerase 9; Short=PARP-9 [Homo sapiens] Sequence ID: Q8IXQ6.2 Length: 854 Range 1: 135 to 272 Score:50.4 bits(119), Expect:4e-04, Method:Compositional matrix adjust., Identities:40/143(28%), Positives:69/143(48%), Gaps:18/143(12%) Query 1030 IVNAANTHLKHGGGVAGALNKATNGAMQNESDEYIRQNGPLTVGGSCLLSGHNLA-EKCL 1088 +VNAAN L HGGG+A AL KA +Q ES +++ + G ++ G + L ++ + Sbjct 135 VVNAANEDLLHGGGLALALVKAGGFEIQEESKQFVARYGKVSAGEIAVTGAGRLPCKQII 194 Query 1089 HVVGPNLNAGED---VQLLKRA---------YENFNSQDVLLAPLLSAGIFGAKPLQSLK 1136 H VGP + L+RA Y+N + + V + P LS+GIF L Sbjct 195 HAVGPRWMEWDKQGCTGKLQRAIVSILNYVIYKNTHIKTVAI-PALSSGIFQF----PLN 249 Query 1137 MCVEIVRTQVYLAVNDKSLYDQI 1159 +C + + + +++ K + + Sbjct 250 LCTKTIVETIRVSLQGKPMMSNL 272 >RecName: Full=Uncharacterized protein PH1513 [Pyrococcus horikoshii OT3] Sequence ID: O59182.1 Length: 190 Range 1: 16 to 165 Score:45.1 bits(105), Expect:0.004, Method:Composition-based stats., Identities:45/153(29%), Positives:74/153(48%), Gaps:25/153(16%) Query 1026 KPTVIVNAANTHLKHGGGVAGALNKATNGAMQN----ESDEYIRQ-------NGPLTVGG 1074 + IVNAAN +L+HGGGVA A+ KA +G + +E RQ +G + V Sbjct 16 RAEAIVNAANKYLEHGGGVAYAIAKAASGDVSEYTRISKEEMRRQLGKDWIEHGEVVVTP 75 Query 1075 SCLLSGHNLAEKCLHVVGP------NLNAGEDVQL-----LKRAYENFNSQDVLLAPLLS 1123 L N + +H VGP + + E ++L LK+A E + + P +S Sbjct 76 PMKLK-ENGVKYVIHTVGPYCGGVWSKDKEEKLKLAILGALKKADE-LGVKSIAF-PAIS 132 Query 1124 AGIFGAKPLQSLKMCVEIVRTQVYLAVNDKSLY 1156 AGI+G + ++ E+V+ + +A + K +Y Sbjct 133 AGIYGCPLKEVVRTFKEVVKEFLKVANHVKEVY 165 >RecName: Full=Uncharacterized protein PYRAB06560 [Pyrococcus abyssi GE5] Sequence ID: Q9V0Y3.2 Length: 183 Range 1: 13 to 150 Score:44.3 bits(103), Expect:0.006, Method:Composition-based stats., Identities:49/153(32%), Positives:70/153(45%), Gaps:41/153(26%) Query 1026 KPTVIVNAANTHLKHGGGVAGALNKATNGAMQNESDEYIR---------------QNGPL 1070 K IVNAAN +L+HGGGVA A+ KA +G + EYIR ++G + Sbjct 13 KAEAIVNAANKYLEHGGGVAYAIAKAASG----DVSEYIRISKEEMRKQIGRDWIEHGEV 68 Query 1071 TVGGSCLLSGHNLAEKCLHVVGPNLNAGED-----------VQLLKRAYENFNSQDVLLA 1119 V L+ N + +H VGP D + LK+A E + + Sbjct 69 VVTPPLNLA-KNGVKYVIHTVGPYCGGKWDEDKRKKLELAILGALKKADE-LGVRSIAF- 125 Query 1120 PLLSAGIFGAKPLQSLKMCVEIVRTQVYLAVND 1152 P +SAGI+G PL+ E+V+T L VN+ Sbjct 126 PAISAGIYGC-PLE------EVVKT-FKLVVNE 150