BLASTP 2.11.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schaffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: proteomes.fasta 33,731 sequences; 10,571,457 total letters Query= sp|P0A6H1|CLPX_ECOLI ATP-dependent Clp protease ATP-binding subunit ClpX OS=Escherichia coli (strain K12) OX=83333 GN=clpX PE=1 SV=2 Length=424 Score E Sequences producing significant alignments: (Bits) Value sp|A8GAR0|CLPX_SERP5 ATP-dependent Clp protease ATP-binding subun... 806 0.0 sp|Q8ZC66|CLPX_YERPE ATP-dependent Clp protease ATP-binding subun... 805 0.0 sp|Q62JK8|CLPX_BURMA ATP-dependent Clp protease ATP-binding subun... 617 0.0 sp|A4SXD7|CLPX_POLAQ ATP-dependent Clp protease ATP-binding subun... 613 0.0 sp|Q7VXI6|CLPX_BORPE ATP-dependent Clp protease ATP-binding subun... 613 0.0 sp|Q92QQ2|CLPX_RHIME ATP-dependent Clp protease ATP-binding subun... 596 0.0 sp|Q8UFY5|CLPX_AGRFC ATP-dependent Clp protease ATP-binding subun... 596 0.0 sp|Q8G0I5|CLPX_BRUSU ATP-dependent Clp protease ATP-binding subun... 586 0.0 sp|A8GL96|HSLU_SERP5 ATP-dependent protease ATPase subunit HslU O... 96.7 9e-22 sp|Q8ZJJ5|HSLU_YERPE ATP-dependent protease ATPase subunit HslU O... 95.1 2e-21 sp|Q7VUJ9|HSLU_BORPE ATP-dependent protease ATPase subunit HslU O... 93.6 8e-21 sp|Q92TA7|HSLU_RHIME ATP-dependent protease ATPase subunit HslU O... 92.8 1e-20 sp|Q8UJ87|HSLU_AGRFC ATP-dependent protease ATPase subunit HslU O... 92.0 3e-20 sp|Q8FY12|HSLU_BRUSU ATP-dependent protease ATPase subunit HslU O... 90.9 6e-20 sp|Q62F00|HSLU_BURMA ATP-dependent protease ATPase subunit HslU O... 82.4 5e-17 tr|A8GCD8|A8GCD8_SERP5 ATP-dependent Clp protease, ATP-binding su... 51.6 6e-07 tr|A0A5P8YGZ0|A0A5P8YGZ0_YERPE ATP-dependent Clp protease ATP-bin... 51.2 6e-07 tr|A8G901|A8G901_SERP5 ATP-dependent zinc metalloprotease FtsH OS... 46.2 2e-05 tr|A0A5P8YB42|A0A5P8YB42_YERPE ATP-dependent protease OS=Yersinia... 46.2 2e-05 tr|A0A5P8YCE6|A0A5P8YCE6_YERPE ATP-dependent zinc metalloprotease... 45.8 3e-05 tr|A0A0H3GCZ6|A0A0H3GCZ6_BRUSU ATP-dependent zinc metalloprotease... 45.4 4e-05 tr|Q92M98|Q92M98_RHIME ATP-dependent zinc metalloprotease FtsH OS... 45.4 4e-05 tr|Q7CT50|Q7CT50_AGRFC ATP-dependent zinc metalloprotease FtsH OS... 45.4 5e-05 tr|A0A0H2WJ72|A0A0H2WJ72_BURMA ATP-dependent zinc metalloprotease... 43.9 1e-04 tr|A4SXL5|A4SXL5_POLAQ ATP-dependent zinc metalloprotease FtsH OS... 43.5 2e-04 >sp|A8GAR0|CLPX_SERP5 ATP-dependent Clp protease ATP-binding subunit ClpX OS=Serratia proteamaculans (strain 568) OX=399741 GN=clpX PE=3 SV=1 Length=423 Score = 806 bits (2081), Expect = 0.0, Method: Compositional matrix adjust. Identities = 396/424 (93%), Positives = 411/424 (97%), Gaps = 1/424 (0%) Query 1 MTDKRKDGSGKLLYCSFCGKSQHEVRKLIAGPSVYICDECVDLCNDIIREEIKEVAPHRE 60 MTDKRKDGSGKLLYCSFCGKSQHEVRKLIAGPSVYICDECVDLCNDIIREEIKEV+PHRE Sbjct 1 MTDKRKDGSGKLLYCSFCGKSQHEVRKLIAGPSVYICDECVDLCNDIIREEIKEVSPHRE 60 Query 61 RSALPTPHEIRNHLDDYVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGP 120 RSALPTPHEIR+HLDDYVIGQE AKKVLAVAVYNHYKRLRNGDTSNG+ELGKSNILLIGP Sbjct 61 RSALPTPHEIRHHLDDYVIGQEPAKKVLAVAVYNHYKRLRNGDTSNGIELGKSNILLIGP 120 Query 121 TGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQRGI 180 TGSGKTLLAETLAR LDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQRGI Sbjct 121 TGSGKTLLAETLARFLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQRGI 180 Query 181 VYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQVDT 240 VYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGT+AAVPPQGGRKHPQQEFLQVDT Sbjct 181 VYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTIAAVPPQGGRKHPQQEFLQVDT 240 Query 241 SKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLIKFGL 300 SKILFICGGAFAGLDKVI RV TGSGIGFGATVK +S+KA+EGELL Q EPEDLIKFGL Sbjct 241 SKILFICGGAFAGLDKVIGQRVNTGSGIGFGATVKGESEKATEGELLLQAEPEDLIKFGL 300 Query 301 IPEFIGRLPVVATLNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALDAIAK 360 IPEFIGRLPVVATL+ELSE+ALIQILKEPKNALTKQYQALFNLEGV+LEFR+EAL+AIA+ Sbjct 301 IPEFIGRLPVVATLSELSEDALIQILKEPKNALTKQYQALFNLEGVELEFREEALNAIAR 360 Query 361 KAMARKTGARGLRSIVEAALLDTMYDLPSMEDVEKVVIDESVIDGQSKPLLIYGKPEAQQ 420 KAM RKTGARGLRSIVE ALLDTMYDLPSM+ V+KVVIDESVI GQSKPLLIYGKPEA Q Sbjct 361 KAMKRKTGARGLRSIVEGALLDTMYDLPSMDSVDKVVIDESVIAGQSKPLLIYGKPEA-Q 419 Query 421 ASGE 424 ASGE Sbjct 420 ASGE 423 >sp|Q8ZC66|CLPX_YERPE ATP-dependent Clp protease ATP-binding subunit ClpX OS=Yersinia pestis OX=632 GN=clpX PE=3 SV=1 Length=423 Score = 805 bits (2079), Expect = 0.0, Method: Compositional matrix adjust. Identities = 393/424 (93%), Positives = 412/424 (97%), Gaps = 1/424 (0%) Query 1 MTDKRKDGSGKLLYCSFCGKSQHEVRKLIAGPSVYICDECVDLCNDIIREEIKEVAPHRE 60 MTDKRKDGSGKLLYCSFCGKSQHEVRKLIAGPSVYICDECVDLCNDIIREEIKEV+PHR+ Sbjct 1 MTDKRKDGSGKLLYCSFCGKSQHEVRKLIAGPSVYICDECVDLCNDIIREEIKEVSPHRD 60 Query 61 RSALPTPHEIRNHLDDYVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGP 120 RS+LPTPHEIR+HLDDYVIGQE AKKVLAVAVYNHYKRLRNGDTSNG+ELGKSNILLIGP Sbjct 61 RSSLPTPHEIRHHLDDYVIGQEPAKKVLAVAVYNHYKRLRNGDTSNGIELGKSNILLIGP 120 Query 121 TGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQRGI 180 TGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQRGI Sbjct 121 TGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQRGI 180 Query 181 VYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQVDT 240 VYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGT+AAVPPQGGRKHPQQEFLQVDT Sbjct 181 VYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTIAAVPPQGGRKHPQQEFLQVDT 240 Query 241 SKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLIKFGL 300 SKILFICGGAFAGLDKVI R+ TGSGIGFGA VK +S+KA+EGELL+QVEPEDLIKFGL Sbjct 241 SKILFICGGAFAGLDKVIGQRINTGSGIGFGAVVKGQSEKATEGELLSQVEPEDLIKFGL 300 Query 301 IPEFIGRLPVVATLNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALDAIAK 360 IPEFIGRLPVVATL+ELSE+ALIQILKEPKNALTKQYQALF+LEGV+LEFRDEAL AIAK Sbjct 301 IPEFIGRLPVVATLSELSEDALIQILKEPKNALTKQYQALFSLEGVELEFRDEALTAIAK 360 Query 361 KAMARKTGARGLRSIVEAALLDTMYDLPSMEDVEKVVIDESVIDGQSKPLLIYGKPEAQQ 420 KAMARKTGARGLRSIVE ALLDTMYDLPSM+ VEKVV+DESVI GQS P+LIYG+PEA Q Sbjct 361 KAMARKTGARGLRSIVEGALLDTMYDLPSMDSVEKVVVDESVIAGQSAPMLIYGQPEA-Q 419 Query 421 ASGE 424 ASGE Sbjct 420 ASGE 423 >sp|Q62JK8|CLPX_BURMA ATP-dependent Clp protease ATP-binding subunit ClpX OS=Burkholderia mallei (strain ATCC 23344) OX=243160 GN=clpX PE=3 SV=1 Length=423 Score = 617 bits (1592), Expect = 0.0, Method: Compositional matrix adjust. Identities = 305/415 (73%), Positives = 358/415 (86%), Gaps = 4/415 (1%) Query 1 MTDKRKDGSGKLLYCSFCGKSQHEVRKLIAGPSVYICDECVDLCNDIIREEIKE--VAPH 58 M DK+ S KLLYCSFCGKSQHEV+KLIAGPSV+ICDEC+DLCN+IIR+E V Sbjct 1 MADKKGSNSEKLLYCSFCGKSQHEVKKLIAGPSVFICDECIDLCNEIIRDEAAAAGVEAS 60 Query 59 RERSALPTPHEIRNHLDDYVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLI 118 +S LP+P EIR+ LD YVIGQE+AKK+LAVAVYNHYKRL++ D + VEL KSNILLI Sbjct 61 LSKSDLPSPQEIRDILDQYVIGQERAKKILAVAVYNHYKRLKHLDKKDDVELSKSNILLI 120 Query 119 GPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQR 178 GPTGSGKTLLA+TLARLL+VPF +ADATTLTEAGYVGEDVENIIQKLLQ C+Y+V+KAQR Sbjct 121 GPTGSGKTLLAQTLARLLNVPFVIADATTLTEAGYVGEDVENIIQKLLQNCNYEVEKAQR 180 Query 179 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQV 238 GIVYIDEIDKIS KSDNPSITRDVSGEGVQQALLKL+EGT+A+VPPQGGRKHP Q+F+QV Sbjct 181 GIVYIDEIDKISCKSDNPSITRDVSGEGVQQALLKLVEGTMASVPPQGGRKHPNQDFIQV 240 Query 239 DTSKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLIKF 298 DT+ ILFICGGAF GL+KVI+ R E +GIGFGATVK+K ++ + GE+L +VEPEDLIKF Sbjct 241 DTTNILFICGGAFDGLEKVITDRTEK-TGIGFGATVKSKQERDA-GEVLREVEPEDLIKF 298 Query 299 GLIPEFIGRLPVVATLNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALDAI 358 GLIPE IGRLPVVATL +L E AL++IL EPKNAL KQYQ LF +E V+LE R +AL A+ Sbjct 299 GLIPELIGRLPVVATLGKLDEAALMKILVEPKNALVKQYQKLFAMERVELEIRPDALQAV 358 Query 359 AKKAMARKTGARGLRSIVEAALLDTMYDLPSMEDVEKVVIDESVIDGQSKPLLIY 413 A+KA+ RKTGARGLRSI+E ALLD MY+LP+++ V KV+ID++VI+G KPLLIY Sbjct 359 ARKAIRRKTGARGLRSIIEQALLDVMYELPTLKGVSKVIIDDNVIEGDGKPLLIY 413 >sp|A4SXD7|CLPX_POLAQ ATP-dependent Clp protease ATP-binding subunit ClpX OS=Polynucleobacter asymbioticus (strain DSM 18221 / CIP 109841 / QLW-P1DMWA-1) OX=312153 GN=clpX PE=3 SV=1 Length=453 Score = 613 bits (1580), Expect = 0.0, Method: Compositional matrix adjust. Identities = 311/435 (71%), Positives = 350/435 (80%), Gaps = 30/435 (7%) Query 7 DGSGKLLYCSFCGKSQHEVRKLIAGPSVYICDECVDLCNDIIREEIKEVAPHRERSALPT 66 + S K+LYCSFCGKSQHEV+KLIAGPSV+ICDEC+DLC DII+EEI ++ +LPT Sbjct 8 NSSEKVLYCSFCGKSQHEVKKLIAGPSVFICDECIDLCTDIIQEEIAKLPKEEGDESLPT 67 Query 67 PHEIRNHLDDYVIGQEQAKKVLAVAVYNHYKRL------------RNGD----------- 103 PHEIR +LD YVIGQE AKK LAVAVYNHYKRL ++G Sbjct 68 PHEIRGNLDQYVIGQEHAKKTLAVAVYNHYKRLQYLPKPKKEKLDKDGKPVEASDKKESK 127 Query 104 -----TSNGVELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDV 158 +GVEL KSNILLIGPTGSGKTLLA+TLAR+LDVPF MADATTLTEAGYVGEDV Sbjct 128 LPAKAIVDGVELAKSNILLIGPTGSGKTLLAQTLARMLDVPFVMADATTLTEAGYVGEDV 187 Query 159 ENIIQKLLQKCDYDVQKAQRGIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGT 218 ENIIQKLLQ CDY+V+KAQRGIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKL+EGT Sbjct 188 ENIIQKLLQACDYNVEKAQRGIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLVEGT 247 Query 219 VAAVPPQGGRKHPQQEFLQVDTSKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKS 278 +A+VPPQGGRKHP Q+FLQVDT+ ILFICGGAF GL+KVI R +GIGF ATV K Sbjct 248 MASVPPQGGRKHPNQDFLQVDTTNILFICGGAFDGLEKVIQQRT-AKTGIGFNATVPGK- 305 Query 279 DKASEGELLAQVEPEDLIKFGLIPEFIGRLPVVATLNELSEEALIQILKEPKNALTKQYQ 338 D+ +LL +VEPEDLIKFGLIPE IGRLPVVATL +L EEALIQIL EPKNAL KQYQ Sbjct 306 DERGVSDLLIEVEPEDLIKFGLIPELIGRLPVVATLAQLDEEALIQILTEPKNALVKQYQ 365 Query 339 ALFNLEGVDLEFRDEALDAIAKKAMARKTGARGLRSIVEAALLDTMYDLPSMEDVEKVVI 398 AL +EG +LE R EAL AIAKKA+ARKTGARGLRSI+E +L+D MYDLPS+++V+KVVI Sbjct 366 ALLTMEGSELEVRREALSAIAKKAIARKTGARGLRSILEGSLMDVMYDLPSLKNVQKVVI 425 Query 399 DESVIDGQSKPLLIY 413 DES I KPLL+Y Sbjct 426 DESSIAEGGKPLLVY 440 >sp|Q7VXI6|CLPX_BORPE ATP-dependent Clp protease ATP-binding subunit ClpX OS=Bordetella pertussis (strain Tohama I / ATCC BAA-589 / NCTC 13251) OX=257313 GN=clpX PE=3 SV=1 Length=434 Score = 613 bits (1580), Expect = 0.0, Method: Compositional matrix adjust. Identities = 302/425 (71%), Positives = 354/425 (83%), Gaps = 4/425 (1%) Query 1 MTDKRKDGSGKLLYCSFCGKSQHEVRKLIAGPSVYICDECVDLCNDIIREEIKEVAPHRE 60 M +K+ K+L+CSFC KSQHEVRKLIAGPSV+ICDEC+DLCNDIIREE + A Sbjct 1 MPEKKGSADAKVLHCSFCNKSQHEVRKLIAGPSVFICDECIDLCNDIIREEAQATARAAI 60 Query 61 RSALPTPHEIRNHLDDYVIGQEQAKKVLAVAVYNHYKRLRNGDTS-NGVELGKSNILLIG 119 RS LPTP EI+ LD YVIGQ K++LAVAVYNHYKR+R+G+ + VEL KSNI+LIG Sbjct 61 RSELPTPAEIKTFLDQYVIGQTSPKRMLAVAVYNHYKRIRHGEIKGDEVELSKSNIMLIG 120 Query 120 PTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQRG 179 PTGSGKTLLA+TLAR+L+VPF MADATTLTEAGYVGEDVENIIQKLLQ C+YDV+KAQR Sbjct 121 PTGSGKTLLAQTLARMLNVPFVMADATTLTEAGYVGEDVENIIQKLLQNCNYDVEKAQRA 180 Query 180 IVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQVD 239 I+YIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVA+VPPQGGRKHP Q+F+QVD Sbjct 181 IIYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVASVPPQGGRKHPNQDFVQVD 240 Query 240 TSKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLIKFG 299 T+ ILFI GGAF GL+KVI R E SGIGF A V+AKS++ GEL ++ EPEDLIKFG Sbjct 241 TTNILFIVGGAFDGLEKVIRDRTEK-SGIGFSAAVRAKSERGV-GELFSEAEPEDLIKFG 298 Query 300 LIPEFIGRLPVVATLNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALDAIA 359 LIPE +GRLPVVATL+EL E L+QIL EPKNAL KQ+Q LF +EG +L+ R +AL AI+ Sbjct 299 LIPELVGRLPVVATLDELDEAVLVQILTEPKNALVKQFQKLFAMEGAELDVRPDALKAIS 358 Query 360 KKAMARKTGARGLRSIVEAALLDTMYDLPSMEDVEKVVIDESVIDGQSKPLLIYGKPEAQ 419 +KA+ RKTGARGLRSI+E ALLDTMYDLPS +V +VV++ + ++G KPLLIY E++ Sbjct 359 RKALKRKTGARGLRSILEGALLDTMYDLPSQGNVSRVVLEANAVEGVGKPLLIYAD-ESE 417 Query 420 QASGE 424 ASGE Sbjct 418 AASGE 422 >sp|Q92QQ2|CLPX_RHIME ATP-dependent Clp protease ATP-binding subunit ClpX OS=Rhizobium meliloti (strain 1021) OX=266834 GN=clpX PE=3 SV=1 Length=425 Score = 596 bits (1537), Expect = 0.0, Method: Compositional matrix adjust. Identities = 291/407 (71%), Positives = 346/407 (85%), Gaps = 3/407 (1%) Query 9 SGKLLYCSFCGKSQHEVRKLIAGPSVYICDECVDLCNDIIREEIKEVAPHRERSALPTPH 68 S LYCSFCGKSQHEVRKLIAGP+V+ICDECV+LC DIIREE K + + R +PTP Sbjct 12 SKNTLYCSFCGKSQHEVRKLIAGPTVFICDECVELCMDIIREENK-TSMVKSRDGVPTPQ 70 Query 69 EIRNHLDDYVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLL 128 EI LD+YVIGQ+QAK++L+VAV+NHYKRL + S+ VEL KSNI+L+GPTG GKT L Sbjct 71 EIIKVLDEYVIGQQQAKRILSVAVHNHYKRLAHAAKSSDVELAKSNIMLVGPTGCGKTYL 130 Query 129 AETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQRGIVYIDEIDK 188 A+TLAR++DVPFTMADATTLTEAGYVGEDVENII KLLQ DY+V++AQRGIVYIDE+DK Sbjct 131 AQTLARIIDVPFTMADATTLTEAGYVGEDVENIILKLLQAADYNVERAQRGIVYIDEVDK 190 Query 189 ISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQVDTSKILFICG 248 ISRKSDNPSITRDVSGEGVQQALLK++EGTVA+VPPQGGRKHPQQEFLQVDT+ ILFICG Sbjct 191 ISRKSDNPSITRDVSGEGVQQALLKIMEGTVASVPPQGGRKHPQQEFLQVDTTNILFICG 250 Query 249 GAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLIKFGLIPEFIGRL 308 GAFAGLDK+IS R E S IGFGATV+A D+ GE+L ++EPEDL+KFGLIPEFIGRL Sbjct 251 GAFAGLDKIISARGEKTS-IGFGATVRAPEDRRV-GEVLRELEPEDLVKFGLIPEFIGRL 308 Query 309 PVVATLNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALDAIAKKAMARKTG 368 PV+ATL +L E+ALIQIL EPKNAL KQYQ LF +E V+L F ++AL IA++A+ RKTG Sbjct 309 PVLATLEDLDEDALIQILSEPKNALVKQYQRLFEMEDVELNFHEDALREIARRAIVRKTG 368 Query 369 ARGLRSIVEAALLDTMYDLPSMEDVEKVVIDESVIDGQSKPLLIYGK 415 ARGLRSI+E LLDTM++LP++E V +VVI + V+ G ++PL IY + Sbjct 369 ARGLRSIMEKILLDTMFELPTLEGVREVVISDEVVKGTARPLYIYSE 415 >sp|Q8UFY5|CLPX_AGRFC ATP-dependent Clp protease ATP-binding subunit ClpX OS=Agrobacterium fabrum (strain C58 / ATCC 33970) OX=176299 GN=clpX PE=3 SV=1 Length=425 Score = 596 bits (1537), Expect = 0.0, Method: Compositional matrix adjust. Identities = 292/414 (71%), Positives = 349/414 (84%), Gaps = 3/414 (1%) Query 9 SGKLLYCSFCGKSQHEVRKLIAGPSVYICDECVDLCNDIIREEIKEVAPHRERSALPTPH 68 S LYCSFCGKSQHEVRKLIAGP+V+ICDECV+LC DIIREE K + + R +PTP Sbjct 12 SKNTLYCSFCGKSQHEVRKLIAGPTVFICDECVELCMDIIREENK-TSMVKSREGVPTPQ 70 Query 69 EIRNHLDDYVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLL 128 +I LD+YVIGQ+QAKK+L+VAV+NHYKRL + + VEL KSNI+L+GPTG GKT L Sbjct 71 DIIKILDEYVIGQKQAKKILSVAVHNHYKRLAHASKNGDVELAKSNIMLVGPTGCGKTYL 130 Query 129 AETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQRGIVYIDEIDK 188 A+TLAR++DVPFTMADATTLTEAGYVGEDVENII KLLQ DY+V++AQRGIVYIDE+DK Sbjct 131 AQTLARIIDVPFTMADATTLTEAGYVGEDVENIILKLLQAADYNVERAQRGIVYIDEVDK 190 Query 189 ISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQVDTSKILFICG 248 ISRKSDNPSITRDVSGEGVQQALLK++EGTVA+VPPQGGRKHPQQEFLQVDT+ ILFICG Sbjct 191 ISRKSDNPSITRDVSGEGVQQALLKIMEGTVASVPPQGGRKHPQQEFLQVDTTNILFICG 250 Query 249 GAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLIKFGLIPEFIGRL 308 GAFAGLDK+IS R E S IGFGATVKA+ D+ GE+L ++EPEDL+KFGLIPEFIGRL Sbjct 251 GAFAGLDKIISARGEKTS-IGFGATVKAEDDRRV-GEVLRELEPEDLVKFGLIPEFIGRL 308 Query 309 PVVATLNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALDAIAKKAMARKTG 368 PV+ATL +L E+ALIQIL EPKNAL KQYQ LF +E V+L F ++AL IA++A+ RKTG Sbjct 309 PVLATLEDLDEDALIQILSEPKNALVKQYQRLFEMEDVELTFHEDALREIARRAITRKTG 368 Query 369 ARGLRSIVEAALLDTMYDLPSMEDVEKVVIDESVIDGQSKPLLIYGKPEAQQAS 422 ARGLRSI+E LLDTM++LP++E V +VVI V+ G ++PL IY + ++A+ Sbjct 369 ARGLRSIMEKILLDTMFELPTLEGVREVVISNDVVSGVARPLYIYADRQEEKAN 422 >sp|Q8G0I5|CLPX_BRUSU ATP-dependent Clp protease ATP-binding subunit ClpX OS=Brucella suis biovar 1 (strain 1330) OX=204722 GN=clpX PE=3 SV=1 Length=424 Score = 586 bits (1511), Expect = 0.0, Method: Compositional matrix adjust. Identities = 288/414 (70%), Positives = 346/414 (84%), Gaps = 3/414 (1%) Query 9 SGKLLYCSFCGKSQHEVRKLIAGPSVYICDECVDLCNDIIREEIKEVAPHRERSALPTPH 68 S LYCSFCGKSQHEVRKLIAGP+V+ICDECV+LC DIIREE K + + R +PTP Sbjct 11 SKNTLYCSFCGKSQHEVRKLIAGPTVFICDECVELCMDIIREENKS-SMVKSREGVPTPQ 69 Query 69 EIRNHLDDYVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLL 128 EI LDDYVIGQ+ AK+VL+VAV+NHYKRL + ++ +EL KSNILL+GPTG GKT L Sbjct 70 EIMAVLDDYVIGQKDAKRVLSVAVHNHYKRLAHQSKNSDIELAKSNILLVGPTGCGKTYL 129 Query 129 AETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQRGIVYIDEIDK 188 A+TLAR++DVPF MADATTLTEAGYVGEDVENII KLLQ DY+V++AQRGIVYIDE+DK Sbjct 130 AQTLARIIDVPFIMADATTLTEAGYVGEDVENIILKLLQAADYNVERAQRGIVYIDEVDK 189 Query 189 ISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQVDTSKILFICG 248 ISRKSDNPSITRDVSGEGVQQALLK++EGTVA+VPPQGGRKHPQQEFLQVDT+ ILFICG Sbjct 190 ISRKSDNPSITRDVSGEGVQQALLKIMEGTVASVPPQGGRKHPQQEFLQVDTTNILFICG 249 Query 249 GAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLIKFGLIPEFIGRL 308 GAFAGLD++IS R E S IGFGATVK+ D+ GE+ ++EPEDL+KFGLIPEF+GRL Sbjct 250 GAFAGLDRIISARGEKTS-IGFGATVKS-VDERRIGEVFKELEPEDLLKFGLIPEFVGRL 307 Query 309 PVVATLNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALDAIAKKAMARKTG 368 PV+ATL +L +AL+QIL EPKNAL KQYQ LF++E V+L F D+AL AIA KA+ KTG Sbjct 308 PVIATLEDLDVDALVQILTEPKNALVKQYQRLFDMENVELVFHDDALRAIANKAVEHKTG 367 Query 369 ARGLRSIVEAALLDTMYDLPSMEDVEKVVIDESVIDGQSKPLLIYGKPEAQQAS 422 ARGLRSI+E LLDTM++LP++E V +VVI V+DG ++PL IY + + ++ + Sbjct 368 ARGLRSIMEKILLDTMFELPTLEGVREVVISGDVVDGSARPLYIYAERQDEKGN 421 >sp|A8GL96|HSLU_SERP5 ATP-dependent protease ATPase subunit HslU OS=Serratia proteamaculans (strain 568) OX=399741 GN=hslU PE=3 SV=1 Length=444 Score = 96.7 bits (239), Expect = 9e-22, Method: Compositional matrix adjust. Identities = 46/100 (46%), Positives = 69/100 (69%), Gaps = 1/100 (1%) Query 66 TPHEIRNHLDDYVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGK 125 TP EI + LD Y+IGQ +AK+ +A+A+ N ++R++ + E+ NIL+IGPTG GK Sbjct 5 TPREIVSELDSYIIGQNKAKRAVAIALRNRWRRMQLNEMLRH-EVTPKNILMIGPTGVGK 63 Query 126 TLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKL 165 T +A LA+L + PF +AT TE GYVG++V++II+ L Sbjct 64 TEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDL 103 Score = 96.3 bits (238), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 77/215 (36%), Positives = 98/215 (46%), Gaps = 58/215 (27%) Query 177 QRGIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFL 236 Q GIV+IDEIDKI ++ S DVS EGVQ+ LL L+EG + KH Sbjct 249 QHGIVFIDEIDKICKRGGQSS-GPDVSREGVQRDLLPLVEGCTVST------KHGM---- 297 Query 237 QVDTSKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLI 296 V T ILFI GAF +T S P DLI Sbjct 298 -VKTDHILFIASGAF-----------QTAS-------------------------PSDLI 320 Query 297 KFGLIPEFIGRLPVVATLNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALD 356 PE GRLP+ L L+ E +IL EP +LT+QY+AL EGV++EF E + Sbjct 321 -----PELQGRLPIRVELQALTTEDFERILTEPSASLTEQYKALMGTEGVNIEFTAEGIR 375 Query 357 AIAKKAM-----ARKTGARGLRSIVEAALLDTMYD 386 IA+ A GAR L +++E + D YD Sbjct 376 RIAEAAWQVNESTENIGARRLHTVLERLMEDISYD 410 >sp|Q8ZJJ5|HSLU_YERPE ATP-dependent protease ATPase subunit HslU OS=Yersinia pestis OX=632 GN=hslU PE=3 SV=1 Length=443 Score = 95.1 bits (235), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 45/100 (45%), Positives = 70/100 (70%), Gaps = 1/100 (1%) Query 66 TPHEIRNHLDDYVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGK 125 TP EI + LD ++IGQ++AK+ +A+A+ N ++R++ + E+ NIL+IGPTG GK Sbjct 5 TPREIVSELDSHIIGQDKAKRAVAIALRNRWRRMQLNEELRH-EVTPKNILMIGPTGVGK 63 Query 126 TLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKL 165 T +A LA+L + PF +AT TE GYVG++V++II+ L Sbjct 64 TEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDL 103 Score = 92.8 bits (229), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 74/215 (34%), Positives = 95/215 (44%), Gaps = 59/215 (27%) Query 177 QRGIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFL 236 Q GIV+IDEIDKI ++ DVS EGVQ+ LL L+EG + KH Sbjct 249 QHGIVFIDEIDKICKRGQTSG--PDVSREGVQRDLLPLVEGCTVST------KHGM---- 296 Query 237 QVDTSKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLI 296 V T ILFI GAF V + SD Sbjct 297 -VKTDHILFIASGAF---------------------QVSSPSD----------------- 317 Query 297 KFGLIPEFIGRLPVVATLNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALD 356 LIPE GRLP+ L L+ + +IL EP +LT+QY+AL EGV +EF E + Sbjct 318 ---LIPELQGRLPIRVELQALTTDDFERILTEPSASLTEQYKALMATEGVTIEFTREGIR 374 Query 357 AIAKKAM-----ARKTGARGLRSIVEAALLDTMYD 386 IA+ A GAR L +++E + D YD Sbjct 375 KIAEAAWQVNERTENIGARRLHTVLERLMEDISYD 409 >sp|Q7VUJ9|HSLU_BORPE ATP-dependent protease ATPase subunit HslU OS=Bordetella pertussis (strain Tohama I / ATCC BAA-589 / NCTC 13251) OX=257313 GN=hslU PE=3 SV=1 Length=444 Score = 93.6 bits (231), Expect = 8e-21, Method: Compositional matrix adjust. Identities = 48/112 (43%), Positives = 72/112 (64%), Gaps = 4/112 (4%) Query 66 TPHEIRNHLDDYVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGK 125 TP EI + LD ++IGQ +AK+ +AVA+ N ++R + + E+ NIL+IGPTG GK Sbjct 7 TPGEIVSELDKFIIGQNRAKRAVAVALRNRWRRQQVAEPLRH-EIHPKNILMIGPTGVGK 65 Query 126 TLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQ 177 T +A LA+L + PF +AT TE GYVG DV+ II+ L +Y +++ + Sbjct 66 TEIARRLAKLANAPFIKIEATKFTEVGYVGRDVDTIIRDL---TEYSIKQTR 114 Score = 88.2 bits (217), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 76/235 (32%), Positives = 103/235 (44%), Gaps = 60/235 (26%) Query 177 QRGIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFL 236 Q GIV++DEIDKI+ + + DVS +GVQ+ LL L+EGT + Sbjct 250 QNGIVFLDEIDKIAARQETGGA--DVSRQGVQRDLLPLVEGTTV-----------NTRYG 296 Query 237 QVDTSKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLI 296 V T ILFI GAF LA+ P DLI Sbjct 297 MVRTDHILFIASGAFH----------------------------------LAR--PSDLI 320 Query 297 KFGLIPEFIGRLPVVATLNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALD 356 PE GR P+ L+ LS E + IL E +L KQY AL E V LEF D+ + Sbjct 321 -----PELQGRFPIRVELDSLSAEDFVSILSETDASLIKQYTALLGTEDVKLEFTDDGIR 375 Query 357 AIAKKAMA-----RKTGARGLRSIVEAALLDTMYDLPSMEDVEKVVIDESVIDGQ 406 +A+ A + GAR L +++E L + +D S E + ID + +D Q Sbjct 376 RLAELAFSVNERTENIGARRLYTVMEKLLEELSFD-ASANSGEVITIDAAYVDLQ 429 >sp|Q92TA7|HSLU_RHIME ATP-dependent protease ATPase subunit HslU OS=Rhizobium meliloti (strain 1021) OX=266834 GN=hslU PE=3 SV=1 Length=435 Score = 92.8 bits (229), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 46/102 (45%), Positives = 67/102 (66%), Gaps = 1/102 (1%) Query 66 TPHEIRNHLDDYVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGK 125 +P EI + LD Y+IGQ+ AK+ +A+A+ N ++R + D E+ NIL+IGPTG GK Sbjct 5 SPREIVSELDRYIIGQKDAKRAVAIALRNRWRRQQLDDELRD-EVMPKNILMIGPTGVGK 63 Query 126 TLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQ 167 T ++ LA+L PF +AT TE GYVG DVE I++ L++ Sbjct 64 TEISRRLAKLAGAPFVKVEATKFTEVGYVGRDVEQIVRDLVE 105 Score = 90.5 bits (223), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 71/215 (33%), Positives = 102/215 (47%), Gaps = 59/215 (27%) Query 179 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQV 238 GIV++DEIDKI+ + I VS EGVQ+ LL L+EGT A ++ V Sbjct 243 GIVFLDEIDKIATREG--GIGAGVSREGVQRDLLPLVEGTTVAT-----------KYGPV 289 Query 239 DTSKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLIKF 298 T ILFI GAF H +P DL+ Sbjct 290 KTDHILFIASGAF--------H----------------------------VAKPSDLL-- 311 Query 299 GLIPEFIGRLPVVATLNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALDAI 358 PE GRLP+ L L++E +IL E + +L +QY+AL EGV L+F ++A+DA+ Sbjct 312 ---PELQGRLPIRVELRALTKEDFRRILTETEASLIRQYKALLETEGVALDFTEDAIDAL 368 Query 359 AKKAM-----ARKTGARGLRSIVEAALLDTMYDLP 388 A+ A+ GAR L++++E L D ++ P Sbjct 369 AEVAVQLNANVENIGARRLQTVMERVLDDVSFNAP 403 >sp|Q8UJ87|HSLU_AGRFC ATP-dependent protease ATPase subunit HslU OS=Agrobacterium fabrum (strain C58 / ATCC 33970) OX=176299 GN=hslU PE=3 SV=1 Length=435 Score = 92.0 bits (227), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 47/102 (46%), Positives = 67/102 (66%), Gaps = 1/102 (1%) Query 66 TPHEIRNHLDDYVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGK 125 +P EI + LD ++IGQ AK+ +A+A+ N ++R + D S E+ NIL+IGPTG GK Sbjct 5 SPREIVSELDRHIIGQHDAKRAVAIALRNRWRR-QQLDESLRDEVMPKNILMIGPTGVGK 63 Query 126 TLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQ 167 T ++ LA+L PF +AT TE GYVG DVE II+ L++ Sbjct 64 TEISRRLAKLAGAPFIKVEATKFTEVGYVGRDVEQIIRDLVE 105 Score = 85.5 bits (210), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 66/215 (31%), Positives = 101/215 (47%), Gaps = 59/215 (27%) Query 179 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQV 238 GIV++DEIDKI+ + + + VS EGVQ+ LL L+EGT + ++ V Sbjct 243 GIVFLDEIDKIAAR--DGGMGAGVSREGVQRDLLPLVEGTTVST-----------KYGPV 289 Query 239 DTSKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLIKF 298 T +LFI GAF +P DL+ Sbjct 290 KTDHVLFIASGAFH------------------------------------VAKPSDLL-- 311 Query 299 GLIPEFIGRLPVVATLNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALDAI 358 PE GRLP+ L L++E +IL E + +L +QY+AL E +DL+F D+A+DA+ Sbjct 312 ---PELQGRLPIRVELKPLTKEDFRRILTETEASLIRQYKALMATEELDLDFTDDAIDAL 368 Query 359 AKKAM-----ARKTGARGLRSIVEAALLDTMYDLP 388 A A+ GAR L++++E L + ++ P Sbjct 369 ADVAVHLNSSVENIGARRLQTVMERVLDEISFNAP 403 >sp|Q8FY12|HSLU_BRUSU ATP-dependent protease ATPase subunit HslU OS=Brucella suis biovar 1 (strain 1330) OX=204722 GN=hslU PE=3 SV=1 Length=434 Score = 90.9 bits (224), Expect = 6e-20, Method: Compositional matrix adjust. Identities = 48/114 (42%), Positives = 72/114 (63%), Gaps = 3/114 (3%) Query 66 TPHEIRNHLDDYVIGQEQAKKVLAVAVYNHYKRLR-NGDTSNGVELGKSNILLIGPTGSG 124 +P EI + LD ++IGQ+ AK+ +A+A+ N ++R + G E+ NIL+IGPTG G Sbjct 5 SPREIVSELDRFIIGQKDAKRAVAIALRNRWRRQQLEGQMRE--EVMPKNILMIGPTGVG 62 Query 125 KTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQR 178 KT ++ LA+L PF +AT TE GYVG DVE II+ L++ V++ +R Sbjct 63 KTEISRRLAKLAGAPFVKVEATKFTEVGYVGRDVEQIIRDLVEIAITLVREKRR 116 Score = 87.8 bits (216), Expect = 7e-19, Method: Compositional matrix adjust. Identities = 81/235 (34%), Positives = 106/235 (45%), Gaps = 65/235 (28%) Query 164 KLLQKCDYDVQKAQR-----GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGT 218 KLL + D VQ+A R GIV+IDEIDKI+ + VS EGVQ+ LL L+EGT Sbjct 223 KLLDQ-DQIVQEALRVSEDEGIVFIDEIDKIAAREGGSGA--GVSREGVQRDLLPLVEGT 279 Query 219 VAAVPPQGGRKHPQQEFLQVDTSKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKS 278 A ++ V T ILFI GAF H V S Sbjct 280 TVAT-----------KYGPVKTDHILFITSGAF--------H-------------VSKPS 307 Query 279 DKASEGELLAQVEPEDLIKFGLIPEFIGRLPVVATLNELSEEALIQILKEPKNALTKQYQ 338 D L+PE GRLP+ L+ L+ E +IL E + +L KQY Sbjct 308 D--------------------LLPELQGRLPIRVELSALTREDFRRILTETEASLIKQYI 347 Query 339 ALFNLEGVDLEFRDEALDAIAK-----KAMARKTGARGLRSIVEAALLDTMYDLP 388 AL E V LEF D+A+DA+A A GAR L++++E L + + P Sbjct 348 ALMETEEVKLEFSDDAIDALADIAVDLNATVENIGARRLQTVMEKVLDEISFTAP 402 >sp|Q62F00|HSLU_BURMA ATP-dependent protease ATPase subunit HslU OS=Burkholderia mallei (strain ATCC 23344) OX=243160 GN=hslU PE=3 SV=1 Length=447 Score = 82.4 bits (202), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 48/102 (47%), Positives = 69/102 (68%), Gaps = 1/102 (1%) Query 66 TPHEIRNHLDDYVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGK 125 TP EI + LD ++IGQ +AKK +AVA+ N ++R + + E+ NIL+IGPTG GK Sbjct 5 TPAEIVSELDKHIIGQAKAKKAVAVALRNRWRRQQVAEPLRQ-EITPKNILMIGPTGVGK 63 Query 126 TLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQ 167 T +A LA+L D PF +AT TE GYVG DV++I++ L++ Sbjct 64 TEIARRLAKLADAPFIKIEATKFTEVGYVGRDVDSIVRDLIE 105 Score = 74.7 bits (182), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 73/233 (31%), Positives = 101/233 (43%), Gaps = 59/233 (25%) Query 177 QRGIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFL 236 Q GIV++DEIDKI+ ++ +VS +GVQ+ LL L+EGT ++ Sbjct 252 QNGIVFLDEIDKITSRNHEGG-GGEVSRQGVQRDLLPLVEGTTI-----------NTKYG 299 Query 237 QVDTSKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLI 296 V T ILFI GAF LA+ P DLI Sbjct 300 MVKTDHILFIASGAFH----------------------------------LAK--PSDLI 323 Query 297 KFGLIPEFIGRLPVVATLNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALD 356 PE GR P+ L+ LS + IL +L KQYQAL E V LEF D+ + Sbjct 324 -----PELQGRFPIRVELDSLSVKDFEAILVATDASLVKQYQALLATEDVKLEFADDGIR 378 Query 357 AIAKKAMA-----RKTGARGLRSIVEAALLDTMYDLPSMEDVEKVVIDESVID 404 +A+ A A GAR L +++E LL+ + + V ID + +D Sbjct 379 RLAEIAYAVNEKTENIGARRLYTVIE-KLLEEVSFAAGNHAGQSVTIDSAYVD 430 >tr|A8GCD8|A8GCD8_SERP5 ATP-dependent Clp protease, ATP-binding subunit clpA OS=Serratia proteamaculans (strain 568) OX=399741 GN=Spro_1674 PE=3 SV=1 Length=759 Score = 51.6 bits (122), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 78/317 (25%), Positives = 126/317 (40%), Gaps = 78/317 (25%) Query 78 VIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLLD 137 V GQ+QA + L A+ K R G + +G + L GPTG GKT + LA+ +D Sbjct 459 VFGQDQAIEALTEAI----KMSRAGLGHDRKPVG--SFLFAGPTGVGKTEVTVQLAKAMD 512 Query 138 VPFTMADATTLTE-----------AGYVGEDVENIIQKLLQKCDYDVQKAQRGIVYIDEI 186 + D + E GYVG D ++ + K + V V +DEI Sbjct 513 IKLLRFDMSEYMERHTVSRLIGAPPGYVGYDQGGLLTDAVLKHPHSV-------VLLDEI 565 Query 187 DKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQVDTSKILFI 246 +K + V LL++++ + GRK D ++ + Sbjct 566 EK--------------AHPDVFNLLLQVMDN--GTLTDNNGRK--------ADFRNVILV 601 Query 247 CGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDL---IKFGLIPE 303 + T +G+ ++++ S G L+ Q D IK PE Sbjct 602 ---------------MTTNAGV-------RETERKSIG-LVQQDNSTDAMEEIKKVFTPE 638 Query 304 FIGRLPVVATLNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALDAIAKKAM 363 F RL + N LS E + Q++ + + QA + +GV LE DEA D ++ K Sbjct 639 FRNRLDNILWFNHLSTEVIQQVV----DKFIVELQAQLDAKGVSLEVSDEARDWLSVKGY 694 Query 364 ARKTGARGLRSIVEAAL 380 R GAR + +++ L Sbjct 695 DRAMGARPMARVMQENL 711 Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 34/89 (38%), Positives = 46/89 (52%), Gaps = 16/89 (18%) Query 112 KSNILLIGPTGSGKTLLAETLARLL---DVPFTMADAT--------TLTEAGYVGEDVEN 160 K+N LL+G +G GKT +AE LA + DVP MAD T L Y G D E Sbjct 206 KNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTLYSLDIGSLLAGTKYRG-DFEK 264 Query 161 IIQKLLQKCDYDVQKAQRGIVYIDEIDKI 189 + LL++ + D + I++IDEI I Sbjct 265 RFKALLKQLEQD----KNSILFIDEIHTI 289 >tr|A0A5P8YGZ0|A0A5P8YGZ0_YERPE ATP-dependent Clp protease ATP-binding subunit OS=Yersinia pestis OX=632 GN=clpA PE=3 SV=1 Length=758 Score = 51.2 bits (121), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 79/322 (25%), Positives = 128/322 (40%), Gaps = 72/322 (22%) Query 70 IRNHLDDYVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLA 129 + + L+ V GQ++A + L+ A+ K R G +G + L GPTG GKT + Sbjct 451 LSDRLNMLVFGQDKAIEALSEAI----KMSRAGLGHERQPVG--SFLFAGPTGVGKTEVT 504 Query 130 ETLARLLDVPFTMADATTLTE-----------AGYVGEDVENIIQKLLQKCDYDVQKAQR 178 LA+ LD+ D + E GYVG D ++ V K Sbjct 505 VQLAKALDIELLRFDMSEYMERHTVSRLIGAPPGYVGYDQGGLLTD-------SVIKHPH 557 Query 179 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQV 238 ++ +DEI+K + V LL++++ + GRK + + V Sbjct 558 AVLLLDEIEK--------------AHPDVFNLLLQVMDN--GTLTDNNGRKADFRNVILV 601 Query 239 DTSKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLIKF 298 T+ AG+ R + IGF K +S L + IK Sbjct 602 MTTN---------AGV------RETQRTSIGF------KQQDSSTDAL-------EEIKK 633 Query 299 GLIPEFIGRLPVVATLNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALDAI 358 PEF RL + N LS + Q++ + + QA + +GV LE DEA D + Sbjct 634 IFTPEFRNRLDNIIWFNHLSPAVIQQVV----DKFIVELQAQLDAKGVSLEVSDEARDWL 689 Query 359 AKKAMARKTGARGLRSIVEAAL 380 ++K + GAR + +++ L Sbjct 690 SEKGYDKAMGARPMTRVIQENL 711 >tr|A8G901|A8G901_SERP5 ATP-dependent zinc metalloprotease FtsH OS=Serratia proteamaculans (strain 568) OX=399741 GN=ftsH PE=3 SV=1 Length=643 Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 27/78 (35%), Positives = 41/78 (53%), Gaps = 6/78 (8%) Query 115 ILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQ 174 +L++GP G+GKTLLA+ +A VPF + E +VG + Q + Sbjct 188 VLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEM-FVGVGASRVRDMFEQ-----AK 241 Query 175 KAQRGIVYIDEIDKISRK 192 KA I++IDEID + R+ Sbjct 242 KAAPCIIFIDEIDAVGRQ 259 >tr|A0A5P8YB42|A0A5P8YB42_YERPE ATP-dependent protease OS=Yersinia pestis OX=632 GN=YPO3902 PE=3 SV=1 Length=507 Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 47/188 (25%), Positives = 76/188 (40%), Gaps = 48/188 (26%) Query 28 LIAGPSVYICDECVDLCNDIIREEIKEVAPHRERSALPTPHEIRNHLDDY-VIGQEQAKK 86 LI + ++ D + +C + E +A + P+P NHLD + +IGQ QAK+ Sbjct 148 LIPQGNSWVADHLLAVCGFLQGE--NPLAQGQPFEPAPSPD---NHLDLHDIIGQSQAKR 202 Query 87 VLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADAT 146 L +A G N+LL+GP G+GKT+LA L LL P T D Sbjct 203 ALEIAAA-----------------GGHNLLLLGPPGTGKTMLATRLTGLLP-PLT--DQE 242 Query 147 TLTEAGYVGEDVENIIQKLLQKCDY----------------------DVQKAQRGIVYID 184 L A G N + + + ++ A G++++D Sbjct 243 ALEAAAITGLLHSNALPTQWRCRAFRAPHHSASMAALIGGGSIPRPGEISLAHNGVLFLD 302 Query 185 EIDKISRK 192 E+ + R+ Sbjct 303 ELPEFERR 310 >tr|A0A5P8YCE6|A0A5P8YCE6_YERPE ATP-dependent zinc metalloprotease FtsH OS=Yersinia pestis OX=632 GN=ftsH PE=3 SV=1 Length=644 Score = 45.8 bits (107), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 27/78 (35%), Positives = 41/78 (53%), Gaps = 6/78 (8%) Query 115 ILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQ 174 +L++GP G+GKTLLA+ +A VPF + E +VG + Q + Sbjct 188 VLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEM-FVGVGASRVRDMFEQ-----AK 241 Query 175 KAQRGIVYIDEIDKISRK 192 KA I++IDEID + R+ Sbjct 242 KAAPCIIFIDEIDAVGRQ 259 >tr|A0A0H3GCZ6|A0A0H3GCZ6_BRUSU ATP-dependent zinc metalloprotease FtsH OS=Brucella suis biovar 1 (strain 1330) OX=204722 GN=ftsH PE=3 SV=1 Length=644 Score = 45.4 bits (106), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 27/77 (35%), Positives = 40/77 (52%), Gaps = 6/77 (8%) Query 115 ILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQ 174 +LL+GP G+GKTLLA ++A +VPF + E +VG + Q + Sbjct 193 VLLVGPPGTGKTLLARSVAGEANVPFFTISGSDFVEM-FVGVGASRVRDMFEQ-----AK 246 Query 175 KAQRGIVYIDEIDKISR 191 K I++IDEID + R Sbjct 247 KNAPCIIFIDEIDAVGR 263 >tr|Q92M98|Q92M98_RHIME ATP-dependent zinc metalloprotease FtsH OS=Rhizobium meliloti (strain 1021) OX=266834 GN=ftsH PE=3 SV=1 Length=645 Score = 45.4 bits (106), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 27/77 (35%), Positives = 40/77 (52%), Gaps = 6/77 (8%) Query 115 ILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQ 174 +LL+GP G+GKTLLA ++A +VPF + E +VG + Q + Sbjct 194 VLLVGPPGTGKTLLARSVAGEANVPFFTISGSDFVEM-FVGVGASRVRDMFEQ-----AK 247 Query 175 KAQRGIVYIDEIDKISR 191 K I++IDEID + R Sbjct 248 KNAPCIIFIDEIDAVGR 264 >tr|Q7CT50|Q7CT50_AGRFC ATP-dependent zinc metalloprotease FtsH OS=Agrobacterium fabrum (strain C58 / ATCC 33970) OX=176299 GN=ftsH PE=3 SV=2 Length=648 Score = 45.4 bits (106), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 27/77 (35%), Positives = 40/77 (52%), Gaps = 6/77 (8%) Query 115 ILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQ 174 +LL+GP G+GKTLLA ++A +VPF + E +VG + Q + Sbjct 194 VLLVGPPGTGKTLLARSVAGEANVPFFTISGSDFVEM-FVGVGASRVRDMFEQ-----AK 247 Query 175 KAQRGIVYIDEIDKISR 191 K I++IDEID + R Sbjct 248 KNAPCIIFIDEIDAVGR 264 >tr|A0A0H2WJ72|A0A0H2WJ72_BURMA ATP-dependent zinc metalloprotease FtsH OS=Burkholderia mallei (strain ATCC 23344) OX=243160 GN=ftsH PE=3 SV=1 Length=628 Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 28/77 (36%), Positives = 38/77 (49%), Gaps = 6/77 (8%) Query 115 ILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQ 174 +LL+GP G+GKTLLA +A VPF + E +VG + Q + Sbjct 190 VLLVGPPGTGKTLLARAIAGEAKVPFFSISGSDFVEM-FVGVGAARVRDMFEQ-----AK 243 Query 175 KAQRGIVYIDEIDKISR 191 K IV+IDEID + R Sbjct 244 KHAPCIVFIDEIDAVGR 260 >tr|A4SXL5|A4SXL5_POLAQ ATP-dependent zinc metalloprotease FtsH OS=Polynucleobacter asymbioticus (strain DSM 18221 / CIP 109841 / QLW-P1DMWA-1) OX=312153 GN=ftsH PE=3 SV=1 Length=621 Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 26/77 (34%), Positives = 40/77 (52%), Gaps = 6/77 (8%) Query 115 ILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQ 174 +LL+GP G+GKTLLA+ +A VPF + E +VG + + + + Sbjct 186 VLLVGPPGTGKTLLAKAIAGEAKVPFFSISGSDFVEM-FVGVGASRV-----RDMFENAK 239 Query 175 KAQRGIVYIDEIDKISR 191 K I++IDEID + R Sbjct 240 KNSPCIIFIDEIDAVGR 256 Lambda K H a alpha 0.316 0.135 0.378 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 2332267668 Database: proteomes.fasta Posted date: Mar 22, 2024 6:35 PM Number of letters in database: 10,571,457 Number of sequences in database: 33,731 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40