TBLASTN 2.2.15 [Oct-15-2006]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= swissprot|P0A825|GLYA_ECOLI Serine hydroxymethyltransferase;
         (417 letters)

Database: xc 
           460 sequences; 5,103,728 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE012167 AE008922 |AE012167| Xanthomonas campestris pv. campestr...   575   e-165

>AE012167 AE008922 |AE012167| Xanthomonas campestris pv. campestris
            str. ATCC 33913,  section 75 of 460 of the complete
            genome.
          Length = 10579

 Score =  575 bits (1482), Expect = e-165
 Identities = 277/416 (66%), Positives = 335/416 (80%)
 Frame = +3

Query: 1    MLKREMNIADYDAELWQAMEQEKVRQEEHIELIASENYTSPRVMQAQGSQLTNKYAEGYP 60
            M  R++ +  YD EL +A+  E  RQE+H+ELIASENY SP VM+AQGSQLTNKYAEGYP
Sbjct: 9246 MFSRDVRLETYDPELAKAIAAEAGRQEDHVELIASENYCSPLVMEAQGSQLTNKYAEGYP 9425

Query: 61   GKRYYGGCEYVDIVEQLAIDRAKELFGADYANVQPHSGSQANFAVYTALLEPGDTVLGMN 120
            GKRYYGGCE+VDI EQLAIDR K++FGADYANVQPHSGSQAN AVY ALL+PGDT+LGM+
Sbjct: 9426 GKRYYGGCEFVDIAEQLAIDRIKQVFGADYANVQPHSGSQANQAVYLALLQPGDTILGMS 9605

Query: 121  LAHGGHLTHGSPVNFSGKLYNIVPYGIDATGHIDYADLEKQAKEHKPKMIIGGFSAYSGV 180
            LAHGGHLTHG+ VN SGKL+N V YG++  G IDY ++++ A EHKPKM+I GFSAYS  
Sbjct: 9606 LAHGGHLTHGAKVNASGKLFNAVQYGVNEQGLIDYDEVQRLATEHKPKMVIAGFSAYSQK 9785

Query: 181  VDWAKMREIADSIGAYLFVDMAHVAGLVAAGVYXXXXXXXXXXXXXXXXXLAGPRGGLIL 240
            +DWA+ R IADS+GAYLFVDMAHVAGLVAAGVY                 L GPRGG+IL
Sbjct: 9786 IDWARFRAIADSVGAYLFVDMAHVAGLVAAGVYPSPMDHAHVVTSTTHKTLRGPRGGIIL 9965

Query: 241  AKGGSEELYKKLNSAVFPGGQGGPLMHVIAGKAVALKEAMEPEFKTYQQQVAKNAKAMVE 300
            AKG  E+L KKL S VFPG QGGPLMHVIA KAVA KEA+EPEFKTYQQQV KNA+AM  
Sbjct: 9966 AKGAGEDLVKKLQSIVFPGIQGGPLMHVIAAKAVAFKEALEPEFKTYQQQVVKNAQAMAN 10145

Query: 301  VFLERGYKVVSGGTDNHLFLVDLVDKNLTGKEADAALGRANITVNKNSVPNDPKSPFVTS 360
              + RGYK+VSGGT+NHL LVD++ ++++GK+A+AALG+A+ITVNKNSVPNDP+SPFVTS
Sbjct: 10146TLIARGYKIVSGGTENHLMLVDMIGRDVSGKDAEAALGKAHITVNKNSVPNDPRSPFVTS 10325

Query: 361  GIRVGTPAITRRGFKEAEAKELAGWMCDVLDSINDEAVIERIKGKVLDICARYPVY 416
            G+R+GTPAIT RG++E +  +LA W+ DVLD+  D+AV+ +++  V   C +YPVY
Sbjct: 10326GLRLGTPAITTRGYQEQDCVDLANWIADVLDAPADDAVLAKVRDAVTAQCKKYPVY 10493


  Database: xc
    Posted date:  Oct 28, 2008  7:26 AM
  Number of letters in database: 5,103,728
  Number of sequences in database:  460
  
Lambda     K      H
   0.316    0.135    0.392 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 460
Number of Hits to DB: 2,295,555
Number of extensions: 33963
Number of successful extensions: 157
Number of sequences better than 1.0e-03: 1
Number of HSP's gapped: 156
Number of HSP's successfully gapped: 1
Length of query: 417
Length of database: 1,701,242
Length adjustment: 90
Effective length of query: 327
Effective length of database: 1,659,842
Effective search space: 542768334
Effective search space used: 542768334
Neighboring words threshold: 13
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 46 (22.3 bits)