TBLASTN 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= swissprot|P0A825|GLYA_ECOLI Serine hydroxymethyltransferase; (417 letters) Database: new 884 sequences; 12,243,887 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value AE008816 AE006468 |AE008816| Salmonella typhimurium LT2, section... 751 0.0 embl|AE006056|AE006056 Pasteurella multocida subsp. multocida st... 618 e-178 AE012167 AE008922 |AE012167| Xanthomonas campestris pv. campestr... 575 e-165 >AE008816 AE006468 |AE008816| Salmonella typhimurium LT2, section 120 of 220 of the complete genome. Length = 22690 Score = 751 bits (1940), Expect = 0.0 Identities = 372/417 (89%), Positives = 386/417 (92%) Frame = -2 Query: 1 MLKREMNIADYDAELWQAMEQEKVRQEEHIELIASENYTSPRVMQAQGSQLTNKYAEGYP 60 MLKREMNIADYDAELWQAMEQEKVRQEEHIELIASENYTSPRVMQAQGSQLTNKYAEGYP Sbjct: 9660 MLKREMNIADYDAELWQAMEQEKVRQEEHIELIASENYTSPRVMQAQGSQLTNKYAEGYP 9481 Query: 61 GKRYYGGCEYVDIVEQLAIDRAKELFGADYANVQPHSGSQANFAVYTALLEPGDTVLGMN 120 GKRYYGGCEYVD+VEQLAIDRAKELFGADYANVQPHSGSQANFAVYTALL+PGDTVLGMN Sbjct: 9480 GKRYYGGCEYVDVVEQLAIDRAKELFGADYANVQPHSGSQANFAVYTALLQPGDTVLGMN 9301 Query: 121 LAHGGHLTHGSPVNFSGKLYNIVPYGIDATGHIDYADLEKQAKEHKPKMIIGGFSAYSGV 180 LA GGHLTHGSPVNFSGKLYNIVPYGID +G IDY ++ K AKEHKPKMIIGGFSAYSGV Sbjct: 9300 LAQGGHLTHGSPVNFSGKLYNIVPYGIDESGKIDYDEMAKLAKEHKPKMIIGGFSAYSGV 9121 Query: 181 VDWAKMREIADSIGAYLFVDMAHVAGLVAAGVYXXXXXXXXXXXXXXXXXLAGPRGGLIL 240 VDWAKMREIADSIGAYLFVDMAHVAGL+AAGVY LAGPRGGLIL Sbjct: 9120 VDWAKMREIADSIGAYLFVDMAHVAGLIAAGVYPNPVPHAHVVTTTTHKTLAGPRGGLIL 8941 Query: 241 AKGGSEELYKKLNSAVFPGGQGGPLMHVIAGKAVALKEAMEPEFKTYQQQVAKNAKAMVE 300 AKGG EELYKKLNSAVFP QGGPLMHVIAGKAVALKEAMEPEFK YQQQVAKNAKAMVE Sbjct: 8940 AKGGDEELYKKLNSAVFPSAQGGPLMHVIAGKAVALKEAMEPEFKVYQQQVAKNAKAMVE 8761 Query: 301 VFLERGYKVVSGGTDNHLFLVDLVDKNLTGKEADAALGRANITVNKNSVPNDPKSPFVTS 360 VFL RGYKVVSGGT+NHLFL+DLVDKNLTGKEADAALGRANITVNKNSVPNDPKSPFVTS Sbjct: 8760 VFLNRGYKVVSGGTENHLFLLDLVDKNLTGKEADAALGRANITVNKNSVPNDPKSPFVTS 8581 Query: 361 GIRVGTPAITRRGFKEAEAKELAGWMCDVLDSINDEAVIERIKGKVLDICARYPVYA 417 GIR+G+PA+TRRGFKEAE KELAGWMCDVLD+INDEA IER+K KVLDICAR+PVYA Sbjct: 8580 GIRIGSPAVTRRGFKEAEVKELAGWMCDVLDNINDEATIERVKAKVLDICARFPVYA 8410 >embl|AE006056|AE006056 Pasteurella multocida subsp. multocida str. Pm70 section 23 of 204 of the complete genome. Length = 11122 Score = 618 bits (1594), Expect = e-178 Identities = 310/420 (73%), Positives = 342/420 (81%), Gaps = 3/420 (0%) Frame = +1 Query: 1 MLKREMNIADYDAELWQAMEQEKVRQEEHIELIASENYTSPRVMQAQGSQLTNKYAEGYP 60 MLKR MNIADYD LWQA++ E RQEEHIELIASENY SPRVM+AQGSQ TNKYAEGYP Sbjct: 9760 MLKRSMNIADYDPVLWQAIQDENRRQEEHIELIASENYASPRVMEAQGSQFTNKYAEGYP 9939 Query: 61 GKRYYGGCEYVDIVEQLAIDRAKELFGADYANVQPHSGSQANFAVYTALLEPGDTVLGMN 120 GKRYYGGCEY DIVEQLAIDRAKELF ADY NVQPHSGSQAN AVY ALL+P DT+LGM+ Sbjct: 9940 GKRYYGGCEYADIVEQLAIDRAKELFHADYVNVQPHSGSQANAAVYGALLQPHDTILGMS 10119 Query: 121 LAHGGHLTHGSPVNFSGKLYNIVPYGIDATGHIDYADLEKQAKEHKPKMIIGGFSAYSGV 180 LAHGGHLTHG+ V+FSGK+YN V YGI A G IDY D+ ++A E KPKMI+ GFSAYS V Sbjct: 10120 LAHGGHLTHGASVSFSGKIYNAVQYGITAEGLIDYEDVRQKALECKPKMIVAGFSAYSQV 10299 Query: 181 VDWAKMREIADSIGAYLFVDMAHVAGLVAAGVYXXXXXXXXXXXXXXXXXLAGPRGGLIL 240 VDWAKMREIAD +GAYLFVDMAHVAGL+AAGVY L GPRGGLIL Sbjct: 10300 VDWAKMREIADEVGAYLFVDMAHVAGLIAAGVYPSPLPHAHVVTTTTHKTLGGPRGGLIL 10479 Query: 241 AKGGSEELYKKLNSAVFPGGQGGPLMHVIAGKAVALKEAMEPEFKTYQQQVAKNAKAMVE 300 + E+LYKKL S+VFP QGGPL+HVIA KAV KEA+EPE+K YQQQV KNAKAMV+ Sbjct: 10480 SAAKDEDLYKKLQSSVFPANQGGPLVHVIAAKAVCFKEALEPEYKVYQQQVVKNAKAMVD 10659 Query: 301 VFLERGYKVVSGGTDNHLFLVDLVDKNLTGKEADAALGRANITVNKNSVPNDPKSPFVTS 360 VF +RGY VVS GT+NHLFLVDLV LTGK ADAALG ANITVNKN+VPNDP+ PFVTS Sbjct: 10660 VFKQRGYNVVSNGTENHLFLVDLVSHGLTGKAADAALGSANITVNKNAVPNDPQKPFVTS 10839 Query: 361 GIRVGTPAITRRGFKEAEAKELAGWMCDVLDSI---NDEAVIERIKGKVLDICARYPVYA 417 GIRVGTP+ITRRGFKEAE+ ELAGWMCDVLD++ N+ VI + K KVL IC R PVYA Sbjct: 10840 GIRVGTPSITRRGFKEAESAELAGWMCDVLDAMGKDNEAQVIAQTKEKVLAICKRLPVYA 11019 >AE012167 AE008922 |AE012167| Xanthomonas campestris pv. campestris str. ATCC 33913, section 75 of 460 of the complete genome. Length = 10579 Score = 575 bits (1482), Expect = e-165 Identities = 277/416 (66%), Positives = 335/416 (80%) Frame = +3 Query: 1 MLKREMNIADYDAELWQAMEQEKVRQEEHIELIASENYTSPRVMQAQGSQLTNKYAEGYP 60 M R++ + YD EL +A+ E RQE+H+ELIASENY SP VM+AQGSQLTNKYAEGYP Sbjct: 9246 MFSRDVRLETYDPELAKAIAAEAGRQEDHVELIASENYCSPLVMEAQGSQLTNKYAEGYP 9425 Query: 61 GKRYYGGCEYVDIVEQLAIDRAKELFGADYANVQPHSGSQANFAVYTALLEPGDTVLGMN 120 GKRYYGGCE+VDI EQLAIDR K++FGADYANVQPHSGSQAN AVY ALL+PGDT+LGM+ Sbjct: 9426 GKRYYGGCEFVDIAEQLAIDRIKQVFGADYANVQPHSGSQANQAVYLALLQPGDTILGMS 9605 Query: 121 LAHGGHLTHGSPVNFSGKLYNIVPYGIDATGHIDYADLEKQAKEHKPKMIIGGFSAYSGV 180 LAHGGHLTHG+ VN SGKL+N V YG++ G IDY ++++ A EHKPKM+I GFSAYS Sbjct: 9606 LAHGGHLTHGAKVNASGKLFNAVQYGVNEQGLIDYDEVQRLATEHKPKMVIAGFSAYSQK 9785 Query: 181 VDWAKMREIADSIGAYLFVDMAHVAGLVAAGVYXXXXXXXXXXXXXXXXXLAGPRGGLIL 240 +DWA+ R IADS+GAYLFVDMAHVAGLVAAGVY L GPRGG+IL Sbjct: 9786 IDWARFRAIADSVGAYLFVDMAHVAGLVAAGVYPSPMDHAHVVTSTTHKTLRGPRGGIIL 9965 Query: 241 AKGGSEELYKKLNSAVFPGGQGGPLMHVIAGKAVALKEAMEPEFKTYQQQVAKNAKAMVE 300 AKG E+L KKL S VFPG QGGPLMHVIA KAVA KEA+EPEFKTYQQQV KNA+AM Sbjct: 9966 AKGAGEDLVKKLQSIVFPGIQGGPLMHVIAAKAVAFKEALEPEFKTYQQQVVKNAQAMAN 10145 Query: 301 VFLERGYKVVSGGTDNHLFLVDLVDKNLTGKEADAALGRANITVNKNSVPNDPKSPFVTS 360 + RGYK+VSGGT+NHL LVD++ ++++GK+A+AALG+A+ITVNKNSVPNDP+SPFVTS Sbjct: 10146TLIARGYKIVSGGTENHLMLVDMIGRDVSGKDAEAALGKAHITVNKNSVPNDPRSPFVTS 10325 Query: 361 GIRVGTPAITRRGFKEAEAKELAGWMCDVLDSINDEAVIERIKGKVLDICARYPVY 416 G+R+GTPAIT RG++E + +LA W+ DVLD+ D+AV+ +++ V C +YPVY Sbjct: 10326GLRLGTPAITTRGYQEQDCVDLANWIADVLDAPADDAVLAKVRDAVTAQCKKYPVY 10493 Database: new Posted date: Oct 28, 2008 7:56 AM Number of letters in database: 12,243,887 Number of sequences in database: 884 Lambda K H 0.316 0.135 0.392 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 884 Number of Hits to DB: 4,996,424 Number of extensions: 67839 Number of successful extensions: 327 Number of sequences better than 1.0e-03: 3 Number of HSP's gapped: 323 Number of HSP's successfully gapped: 3 Length of query: 417 Length of database: 4,081,295 Length adjustment: 96 Effective length of query: 321 Effective length of database: 3,996,431 Effective search space: 1282854351 Effective search space used: 1282854351 Neighboring words threshold: 13 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 47 (22.7 bits)