BLASTN 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= CP000800 CP000800.1 Escherichia coli E24377A, complete genome. (1413 letters) Database: vse_srazu 884 sequences; 12,243,887 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value AE008760 AE006468 |AE008760| Salmonella typhimurium LT2, section... 1437 0.0 >AE008760 AE006468 |AE008760| Salmonella typhimurium LT2, section 64 of 220 of the complete genome. Length = 21723 Score = 1437 bits (725), Expect = 0.0 Identities = 1241/1413 (87%) Strand = Plus / Minus Query: 1 atgaaaaagaccaaaattgtttgcaccatcggaccgaaaaccgaatctgaagagatgtta 60 ||||||||||| ||||||||||| || ||||| |||||||||||||| |||||||||||| Sbjct: 9270 atgaaaaagacgaaaattgtttgtactatcggtccgaaaaccgaatccgaagagatgtta 9211 Query: 61 gctaaaatgctggacgctggcatgaacgttatgcgtctgaacttctctcatggtgactat 120 |||||||||||||| ||||||||||| ||||||||||||||||||||||| || ||| Sbjct: 9210 agcaaaatgctggacgcgggcatgaacgtgatgcgtctgaacttctctcatggcgattat 9151 Query: 121 gcagaacacggtcagcgcattcagaatctgcgcaacgtgatgagcaaaactggtaaaacc 180 ||||||||||||||||| || |||||| |||||||||||||||||||||||||||||| Sbjct: 9150 gcagaacacggtcagcgtatccagaatttgcgcaacgtgatgagcaaaactggtaaaaaa 9091 Query: 181 gccgctatcctgcttgataccaaaggtccggaaatccgcaccatgaaactggaaggcggt 240 |||||||| ||||||||||| ||||| || |||||||||||||| ||||||||||||||| Sbjct: 9090 gccgctattctgcttgatactaaaggaccagaaatccgcaccattaaactggaaggcggt 9031 Query: 241 aacgacgtttctctgaaagctggtcagacctttactttcaccactgataaatctgttatc 300 ||||||||||| |||||||| || || ||||||||||| ||||| || ||||| || || Sbjct: 9030 aacgacgtttcgctgaaagcgggccaaacctttacttttaccaccgacaaatccgtggtc 8971 Query: 301 ggcaacagcgaaatggttgcggtaacgtatgaaggtttcactactgacctgtcagttggc 360 || || | ||||| ||||| || || |||||||| || || | |||||| |||||| Sbjct: 8970 ggtaataatgaaatcgttgccgtcacctatgaaggctttaccagcgacctgagcgttggc 8911 Query: 361 aacaccgtactggttgacgatggtctgatcggtatggaagttaccgccattgaaggtaac 420 |||||||| |||||||||||||||||||||||||||||||| |||||||| ||||| || Sbjct: 8910 aacaccgtcctggttgacgatggtctgatcggtatggaagtgaccgccatcgaaggcaat 8851 Query: 421 aaagttatctgtaaagtgctgaacaacggtgacctgggcgaaaacaaaggtgtgaacctg 480 ||||| || ||||| |||||||||||||| || |||||||| |||||||| || |||||| Sbjct: 8850 aaagtcatttgtaaggtgctgaacaacggcgatctgggcgagaacaaaggcgttaacctg 8791 Query: 481 cctggcgtttccattgctctgccagcactggctgaaaaagacaaacaggacctgatcttt 540 || |||||||| ||||||||||| || |||||||||||||||||||||||||||||||| Sbjct: 8790 ccgggcgtttctattgctctgccggcgctggctgaaaaagacaaacaggacctgatcttc 8731 Query: 541 ggttgcgaacaaggcgtagactttgttgctgcttcctttattcgtaagcgttctgacgtt 600 ||||||||||| ||||| ||||||||||| || |||||||| ||||| |||||||||||| Sbjct: 8730 ggttgcgaacagggcgttgactttgttgcggcgtcctttatccgtaaacgttctgacgtt 8671 Query: 601 atcgaaatccgtgagcacctgaaagcgcacggcggcgaaaacatccacatcatctccaaa 660 ||||||| || ||||| |||||||| |||||||||||||| ||||| || ||||| || Sbjct: 8670 gtcgaaattcgcgagcatctgaaagctcacggcggcgaaaatatccagattatctctaag 8611 Query: 661 atcgaaaaccaggaaggcctcaacaacttcgacgaaatcctcgaagcctctgacggcatc 720 |||||||||||||||||||| ||||||||||| ||||| |||||||| || ||||||||| Sbjct: 8610 atcgaaaaccaggaaggcctgaacaacttcgatgaaattctcgaagcttccgacggcatc 8551 Query: 721 atggttgcgcgtggcgacctgggtgtagaaatcccggtagaagaagttatcttcgcccag 780 ||||||||||||||||||||||| |||||||||||||| |||||||| || || || ||| Sbjct: 8550 atggttgcgcgtggcgacctgggcgtagaaatcccggttgaagaagtgatttttgcgcag 8491 Query: 781 aagatgatgatcgaaaaatgtatccgtgcacgtaaagtcgttatcactgcgacccagatg 840 || ||||||||||||||||||||||| |||||||||||||| ||||| ||||| |||||| Sbjct: 8490 aaaatgatgatcgaaaaatgtatccgcgcacgtaaagtcgtgatcaccgcgactcagatg 8431 Query: 841 ctggattccatgatcaaaaacccacgcccgactcgcgcagaagccggtgacgttgcaaac 900 |||||||| |||||||||||||| || ||||| ||||||||||| || |||||||| ||| Sbjct: 8430 ctggattctatgatcaaaaacccgcgtccgacccgcgcagaagcaggcgacgttgcgaac 8371 Query: 901 gccatcctcgacggtactgatgcagtgatgctgtctggtgaatccgcaaaaggtaaatac 960 ||||||||||||||||| ||||| || |||||||| || |||||||||||||| |||||| Sbjct: 8370 gccatcctcgacggtacggatgcggttatgctgtccggcgaatccgcaaaagggaaatac 8311 Query: 961 ccgctggaagcggtttctatcatggcgaccatttgcgaacgtaccgaccgcgtgatgaac 1020 ||||||||||| |||||||||||||||||||| |||||||||||||||||||| |||||| Sbjct: 8310 ccgctggaagccgtttctatcatggcgaccatctgcgaacgtaccgaccgcgtcatgaac 8251 Query: 1021 agccgtctcgagttcaacaatgacaaccgtaaactgcgcattaccgaagcggtatgccgt 1080 |||||||| || | |||||| |||| |||||||||||||||||| ||||| |||||||| Sbjct: 8250 agccgtctggactacaacaacgacagccgtaaactgcgcattacggaagcagtatgccgc 8191 Query: 1081 ggtgccgttgaaactgctgaaaaactggatgctccgctgatcgtggttgctactcagggc 1140 || || || ||||| || ||||||||||| || |||||||||||||| || || |||||| Sbjct: 8190 ggcgcggtagaaaccgccgaaaaactggaagcgccgctgatcgtggtagcgacccagggc 8131 Query: 1141 ggtaaatctgctcgcgcagtacgtaaatacttcccggatgccaccatcctggcactgacc 1200 |||||||| |||||||| || ||||||||||||||||| ||||||||||||||| ||||| Sbjct: 8130 ggtaaatccgctcgcgccgtgcgtaaatacttcccggacgccaccatcctggcattgacc 8071 Query: 1201 accaacgaaaaaacggctcatcagttggtactgagcaaaggcgttgtgccgcagctggtt 1260 ||||| ||| || || | |||||| ||||||||||||||||| || |||||||||| Sbjct: 8070 accaatgaagtgaccgcccgtcagttagtactgagcaaaggcgtggtatcgcagctggtg 8011 Query: 1261 aaagagatcacttctactgatgatttctaccgtctgggtaaagaactggctctgcagagc 1320 ||||| |||| ||||||||||||||||||||||||||| ||||| | || ||||| ||| Sbjct: 8010 aaagaaatcaattctactgatgatttctaccgtctgggcaaagatgtcgccctgcaaagc 7951 Query: 1321 ggtctggcacacaaaggtgacgtcgtagttatggtttctggtgcactggtaccgagcggc 1380 || || || || ||||| ||||||||||| ||||| || || || ||||| || |||||| Sbjct: 7950 ggcctcgcccagaaaggcgacgtcgtagtgatggtctccggcgcgctggttccaagcggc 7891 Query: 1381 actactaacaccgcatctgttcacgtcctgtaa 1413 || ||||||||||| ||||||||||| |||||| Sbjct: 7890 accactaacaccgcctctgttcacgtactgtaa 7858 Database: vse_srazu Posted date: Oct 7, 2007 3:07 PM Number of letters in database: 12,243,887 Number of sequences in database: 884 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Sequences: 884 Number of Hits to DB: 188,375 Number of extensions: 10610 Number of successful extensions: 82 Number of sequences better than 1.0e-03: 1 Number of HSP's gapped: 80 Number of HSP's successfully gapped: 1 Length of query: 1413 Length of database: 12,243,887 Length adjustment: 17 Effective length of query: 1396 Effective length of database: 12,228,859 Effective search space: 17071487164 Effective search space used: 17071487164 X1: 11 (21.8 bits) X2: 15 (29.7 bits) X3: 25 (49.6 bits) S1: 15 (30.2 bits) S2: 22 (44.1 bits)