TBLASTN 2.2.15 [Oct-15-2006]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= sw|P0AD61|KPYK1_ECOLI Pyruvate kinase I (EC 2.7.1.40) (PK-1).
         (470 letters)

Database: pm 
           204 sequences; 2,269,587 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

embl|AE006101|AE006101 Pasteurella multocida subsp. multocida st...   300   9e-83

>embl|AE006101|AE006101 Pasteurella multocida subsp. multocida str.
            Pm70 section 68 of 204 of the complete genome.
          Length = 11534

 Score =  300 bits (769), Expect = 9e-83
 Identities = 185/480 (38%), Positives = 268/480 (55%), Gaps = 10/480 (2%)
 Frame = -2

Query: 1    MKKTKIVCTIGPKTESEEMLAKMLDAGMNVMRLNFSHGDYAEHGQRIQNLRNVMSKTGKT 60
            +++TKIVCT+GP TE    L K++ AG NV+R+NFSHG   +H  R + +R V  K GKT
Sbjct: 8116 LRRTKIVCTMGPSTERGNNLEKIIMAGANVVRMNFSHGTPEDHIGRAEKVREVAKKLGKT 7937

Query: 61   AAILLDTKGPEIRTMKLEGGNDVSLKAGQTFTFTTD-KSVIGNSEMVAVTYEGFTTDLSV 119
             AIL D +GP+IR    + G  + L  G  F    D     G  E V + Y+    D+  
Sbjct: 7936 VAILGDLQGPKIRVSTFKDGK-IFLNIGDKFVLDADLPKGEGTQEGVGLDYKTLPQDVVP 7760

Query: 120  GNTVLVDDGLIGMEVTAIEGNKVICKVLNNGDLGENKGVNLPGVSIALPALAEKDKQDLI 179
            G+ +L+DDG + ++V + EGNKV  +V   G L  NKG+N  G  ++  AL EKDK D++
Sbjct: 7759 GDILLLDDGRVQLKVLSTEGNKVFTEVTVGGPLSNNKGINKLGGGLSADALTEKDKNDIL 7580

Query: 180  FGCEQGVDFVAASFIRKRSDVIEIREHLKAHGGENIHIISKIENQEGLNN---FDEILEA 236
               + GVD++A SF R  +D+   RE  +A  G    I++K+E  E +      D+I+ A
Sbjct: 7579 LAAKIGVDYLAVSFPRSSADLNYARELAEA-AGLKAKIVAKVERAETVATTEAMDDIILA 7403

Query: 237  SDGIMVARGDLGVEIPVEEVIFAQKMMIEKCIRARKVVITATQMLDSMIKNPRPTRAEAG 296
            SD IMVARGDLGVEI   E++  QK +I +  +  +VVITATQM++SMI NP PTRAE  
Sbjct: 7402 SDVIMVARGDLGVEIGDPELVGVQKKLIRRARQLNRVVITATQMMESMISNPMPTRAEVM 7223

Query: 297  DVANAILDGTDAVMLSGESAKGKYPLEAVSIMATICERTDR-----VMNSRLEFNNDNRK 351
            DVANA+LDGTDAVMLS E+A G+YP E V+ MA +C   ++     V   R++   D+  
Sbjct: 7222 DVANAVLDGTDAVMLSAETAAGQYPAETVATMAKVCLGAEKMPSINVSRHRMDITFDS-- 7049

Query: 352  LRITEAVCRGAVETAEKLDAPLIVVA-TQGGKSARAVRKYFPDATILALTTNEKTAHQLV 410
              I E+V   A+  A  +     ++A T  G++A  + +      I AL+ N+   +   
Sbjct: 7048 --IEESVAMSAMYAANHMKGVAAIIAMTHTGRTALLMSRISSGLPIFALSRNQDALNLCA 6875

Query: 411  LSKGVVPQLVKEITSTDDFYRLGKELALQSGLAHKGDVVVMVSGALVPSGTTNTASVHVL 470
            L +GV P    E++           L  + G    GD+V++  G  + +  TNT    V+
Sbjct: 6874 LYRGVTPVHFDEVSRNSKGAAAAIRLLKEKGFLVSGDLVLLTQGDELLASGTNTCRTLVV 6695


  Database: pm
    Posted date:  Sep 26, 2007  3:05 PM
  Number of letters in database: 2,269,587
  Number of sequences in database:  204
  
Lambda     K      H
   0.316    0.133    0.364 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 204
Number of Hits to DB: 802,340
Number of extensions: 8875
Number of successful extensions: 47
Number of sequences better than 1.0e-03: 1
Number of HSP's gapped: 44
Number of HSP's successfully gapped: 1
Length of query: 470
Length of database: 756,529
Length adjustment: 85
Effective length of query: 385
Effective length of database: 739,189
Effective search space: 284587765
Effective search space used: 284587765
Neighboring words threshold: 13
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 47 (22.7 bits)