TBLASTN 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= sw|P0AD61|KPYK1_ECOLI Pyruvate kinase I (EC 2.7.1.40) (PK-1). (470 letters) Database: vse_srazu 884 sequences; 12,243,887 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value AE008760 AE006468 |AE008760| Salmonella typhimurium LT2, section... 875 0.0 embl|AE006101|AE006101 Pasteurella multocida subsp. multocida st... 300 5e-82 AE012435 AE008922 |AE012435| Xanthomonas campestris pv. campestr... 298 2e-81 AE008784 AE006468 |AE008784| Salmonella typhimurium LT2, section... 286 9e-78 >AE008760 AE006468 |AE008760| Salmonella typhimurium LT2, section 64 of 220 of the complete genome. Length = 21723 Score = 875 bits (2262), Expect = 0.0 Identities = 450/470 (95%), Positives = 463/470 (98%) Frame = -1 Query: 1 MKKTKIVCTIGPKTESEEMLAKMLDAGMNVMRLNFSHGDYAEHGQRIQNLRNVMSKTGKT 60 MKKTKIVCTIGPKTESEEML+KMLDAGMNVMRLNFSHGDYAEHGQRIQNLRNVMSKTGK Sbjct: 9270 MKKTKIVCTIGPKTESEEMLSKMLDAGMNVMRLNFSHGDYAEHGQRIQNLRNVMSKTGKK 9091 Query: 61 AAILLDTKGPEIRTMKLEGGNDVSLKAGQTFTFTTDKSVIGNSEMVAVTYEGFTTDLSVG 120 AAILLDTKGPEIRT+KLEGGNDVSLKAGQTFTFTTDKSV+GN+E+VAVTYEGFT+DLSVG Sbjct: 9090 AAILLDTKGPEIRTIKLEGGNDVSLKAGQTFTFTTDKSVVGNNEIVAVTYEGFTSDLSVG 8911 Query: 121 NTVLVDDGLIGMEVTAIEGNKVICKVLNNGDLGENKGVNLPGVSIALPALAEKDKQDLIF 180 NTVLVDDGLIGMEVTAIEGNKVICKVLNNGDLGENKGVNLPGVSIALPALAEKDKQDLIF Sbjct: 8910 NTVLVDDGLIGMEVTAIEGNKVICKVLNNGDLGENKGVNLPGVSIALPALAEKDKQDLIF 8731 Query: 181 GCEQGVDFVAASFIRKRSDVIEIREHLKAHGGENIHIISKIENQEGLNNFDEILEASDGI 240 GCEQGVDFVAASFIRKRSDV+EIREHLKAHGGENI IISKIENQEGLNNFDEILEASDGI Sbjct: 8730 GCEQGVDFVAASFIRKRSDVVEIREHLKAHGGENIQIISKIENQEGLNNFDEILEASDGI 8551 Query: 241 MVARGDLGVEIPVEEVIFAQKMMIEKCIRARKVVITATQMLDSMIKNPRPTRAEAGDVAN 300 MVARGDLGVEIPVEEVIFAQKMMIEKCIRARKVVITATQMLDSMIKNPRPTRAEAGDVAN Sbjct: 8550 MVARGDLGVEIPVEEVIFAQKMMIEKCIRARKVVITATQMLDSMIKNPRPTRAEAGDVAN 8371 Query: 301 AILDGTDAVMLSGESAKGKYPLEAVSIMATICERTDRVMNSRLEFNNDNRKLRITEAVCR 360 AILDGTDAVMLSGESAKGKYPLEAVSIMATICERTDRVMNSRL++NND+RKLRITEAVCR Sbjct: 8370 AILDGTDAVMLSGESAKGKYPLEAVSIMATICERTDRVMNSRLDYNNDSRKLRITEAVCR 8191 Query: 361 GAVETAEKLDAPLIVVATQGGKSARAVRKYFPDATILALTTNEKTAHQLVLSKGVVPQLV 420 GAVETAEKL+APLIVVATQGGKSARAVRKYFPDATILALTTNE TA QLVLSKGVV QLV Sbjct: 8190 GAVETAEKLEAPLIVVATQGGKSARAVRKYFPDATILALTTNEVTARQLVLSKGVVSQLV 8011 Query: 421 KEITSTDDFYRLGKELALQSGLAHKGDVVVMVSGALVPSGTTNTASVHVL 470 KEI STDDFYRLGK++ALQSGLA KGDVVVMVSGALVPSGTTNTASVHVL Sbjct: 8010 KEINSTDDFYRLGKDVALQSGLAQKGDVVVMVSGALVPSGTTNTASVHVL 7861 >embl|AE006101|AE006101 Pasteurella multocida subsp. multocida str. Pm70 section 68 of 204 of the complete genome. Length = 11534 Score = 300 bits (769), Expect = 5e-82 Identities = 185/480 (38%), Positives = 268/480 (55%), Gaps = 10/480 (2%) Frame = -2 Query: 1 MKKTKIVCTIGPKTESEEMLAKMLDAGMNVMRLNFSHGDYAEHGQRIQNLRNVMSKTGKT 60 +++TKIVCT+GP TE L K++ AG NV+R+NFSHG +H R + +R V K GKT Sbjct: 8116 LRRTKIVCTMGPSTERGNNLEKIIMAGANVVRMNFSHGTPEDHIGRAEKVREVAKKLGKT 7937 Query: 61 AAILLDTKGPEIRTMKLEGGNDVSLKAGQTFTFTTD-KSVIGNSEMVAVTYEGFTTDLSV 119 AIL D +GP+IR + G + L G F D G E V + Y+ D+ Sbjct: 7936 VAILGDLQGPKIRVSTFKDGK-IFLNIGDKFVLDADLPKGEGTQEGVGLDYKTLPQDVVP 7760 Query: 120 GNTVLVDDGLIGMEVTAIEGNKVICKVLNNGDLGENKGVNLPGVSIALPALAEKDKQDLI 179 G+ +L+DDG + ++V + EGNKV +V G L NKG+N G ++ AL EKDK D++ Sbjct: 7759 GDILLLDDGRVQLKVLSTEGNKVFTEVTVGGPLSNNKGINKLGGGLSADALTEKDKNDIL 7580 Query: 180 FGCEQGVDFVAASFIRKRSDVIEIREHLKAHGGENIHIISKIENQEGLNN---FDEILEA 236 + GVD++A SF R +D+ RE +A G I++K+E E + D+I+ A Sbjct: 7579 LAAKIGVDYLAVSFPRSSADLNYARELAEA-AGLKAKIVAKVERAETVATTEAMDDIILA 7403 Query: 237 SDGIMVARGDLGVEIPVEEVIFAQKMMIEKCIRARKVVITATQMLDSMIKNPRPTRAEAG 296 SD IMVARGDLGVEI E++ QK +I + + +VVITATQM++SMI NP PTRAE Sbjct: 7402 SDVIMVARGDLGVEIGDPELVGVQKKLIRRARQLNRVVITATQMMESMISNPMPTRAEVM 7223 Query: 297 DVANAILDGTDAVMLSGESAKGKYPLEAVSIMATICERTDR-----VMNSRLEFNNDNRK 351 DVANA+LDGTDAVMLS E+A G+YP E V+ MA +C ++ V R++ D+ Sbjct: 7222 DVANAVLDGTDAVMLSAETAAGQYPAETVATMAKVCLGAEKMPSINVSRHRMDITFDS-- 7049 Query: 352 LRITEAVCRGAVETAEKLDAPLIVVA-TQGGKSARAVRKYFPDATILALTTNEKTAHQLV 410 I E+V A+ A + ++A T G++A + + I AL+ N+ + Sbjct: 7048 --IEESVAMSAMYAANHMKGVAAIIAMTHTGRTALLMSRISSGLPIFALSRNQDALNLCA 6875 Query: 411 LSKGVVPQLVKEITSTDDFYRLGKELALQSGLAHKGDVVVMVSGALVPSGTTNTASVHVL 470 L +GV P E++ L + G GD+V++ G + + TNT V+ Sbjct: 6874 LYRGVTPVHFDEVSRNSKGAAAAIRLLKEKGFLVSGDLVLLTQGDELLASGTNTCRTLVV 6695 >AE012435 AE008922 |AE012435| Xanthomonas campestris pv. campestris str. ATCC 33913, section 343 of 460 of the complete genome. Length = 11282 Score = 298 bits (764), Expect = 2e-81 Identities = 177/467 (37%), Positives = 265/467 (56%), Gaps = 4/467 (0%) Frame = -2 Query: 2 KKTKIVCTIGPKTESEEMLAKMLDAGMNVMRLNFSHGDYAEHGQRIQNLRNVMSKTGKTA 61 ++TKI+ T+GP T+ +L + AG+NV+RLNFSHGD + +R +R + G Sbjct: 9058 RRTKILATLGPATDPPGVLDALFKAGVNVVRLNFSHGDPSGQAKRAAEVRAAAVRVGAEV 8879 Query: 62 AILLDTKGPEIRTMKLEGGNDVSLKAGQTFTFTTD-KSVIGNSEMVAVTYEGFTTDLSVG 120 IL D GP+IR + GG + L G F D + G+ V V+Y G D++ G Sbjct: 8878 GILADLPGPKIRIERFAGGK-IKLTMGDRFDLVADINAPAGDQHQVGVSYLGLPQDVTAG 8702 Query: 121 NTVLVDDGLIGMEVTAIEGNKVICKVLNNGDLGENKGVNLPGVSIALPALAEKDKQDLIF 180 + +L+DDGL+ ++VT ++G +++ VLN+G L + KG+N G ++L AL E+DK+ + Sbjct: 8701 DVLLLDDGLVQLQVTDVQGARIVTTVLNDGVLSDRKGLNKQGGGLSLGALTERDKELIGI 8522 Query: 181 GCEQGVDFVAASFIRKRSDVIEIREHLKAHGGENIHIISKIENQEGLNNFDEILEASDGI 240 + GVDF+A SF R D+ + R+ + HG + ++SKIE E + N EI+EASD + Sbjct: 8521 VAKIGVDFIAVSFCRNAQDMHDARQIAQQHGCD-AQLVSKIERTEAIENLVEIVEASDVV 8345 Query: 241 MVARGDLGVEIPVEEVIFAQKMMIEKCIRARKVVITATQMLDSMIKNPRPTRAEAGDVAN 300 MVARGDLGVEI E+ QK +I + + KVVITATQML SM+++P PTRAE DVAN Sbjct: 8344 MVARGDLGVEIGDAELPGLQKKIIRESLAQNKVVITATQMLQSMVESPIPTRAEVLDVAN 8165 Query: 301 AILDGTDAVMLSGESAKGKYPLEAVSIMATICERTDRVMNSRLEFNNDNRKL-RITEAVC 359 A++DGTDAVMLS E+A G YP+ AV MA IC + +F R L R +A+ Sbjct: 8164 AVIDGTDAVMLSAETAAGAYPVRAVEAMARICLGAEHQFEFDTDFEAAQRNLQRADQAIA 7985 Query: 360 RGAVETAEKLDAPLIVVATQGGKSARAVRKYFPDATILALTTNEKTAHQLVLSKGVVP-Q 418 + +E + +V T+ G + R + ++ + I A T ++ Q+ + +GV P Sbjct: 7984 MATMFLSEHIGLGGVVALTESGGTPRYLSRFRSNMPIYAFTRHDGARRQMAMMRGVFPIG 7805 Query: 419 LVKEITSTDDFYRLGKELALQSGLAHKGDVVVMVSGA-LVPSGTTNT 464 + + R L +++ GD VV SG + G TNT Sbjct: 7804 FDSRGLTPREAARAAIRLLVENERMGPGDRVVFTSGEHMETHGATNT 7664 >AE008784 AE006468 |AE008784| Salmonella typhimurium LT2, section 88 of 220 of the complete genome. Length = 21506 Score = 286 bits (732), Expect = 9e-78 Identities = 178/478 (37%), Positives = 263/478 (55%), Gaps = 11/478 (2%) Frame = +1 Query: 1 MKKTKIVCTIGPKTESEEMLAKMLDAGMNVMRLNFSHGDYAEHGQRIQNLRNVMSKTGKT 60 +++TKIV T+GP T+ + L K++ AG NV+R+NFSHG +H R +R + +K G+ Sbjct: 6922 LRRTKIVTTLGPATDRDNNLEKVIAAGANVVRMNFSHGSPEDHKMRADKVREIAAKLGRH 7101 Query: 61 AAILLDTKGPEIRTMKLEGGNDVSLKAGQTFTFTTDKSV-IGNSEMVAVTYEGFTTDLSV 119 AIL D +GP+IR + G V L G F + G+ E V + Y+G D+ Sbjct: 7102 VAILGDLQGPKIRVSTFKEGK-VFLNIGDKFLLDANLGKGEGDKEKVGIDYKGLPADVVP 7278 Query: 120 GNTVLVDDGLIGMEVTAIEGNKVICKVLNNGDLGENKGVNLPGVSIALPALAEKDKQDLI 179 G+ +L+DDG + ++V ++G KV +V G L NKG+N G ++ AL EKDK D+ Sbjct: 7279 GDILLLDDGRVQLKVLEVQGMKVFTEVTVGGPLSNNKGINKLGGGLSAEALTEKDKADIQ 7458 Query: 180 FGCEQGVDFVAASFIRKRSDVIEIREHLKAHGGENIHIISKIENQEGL---NNFDEILEA 236 GVD++A SF R D+ R L G + I++K+E E + N D+I+ A Sbjct: 7459 TAALIGVDYLAVSFPRCGEDLNYARR-LARDAGCDAKIVAKVERAEAVCDQNAMDDIILA 7635 Query: 237 SDGIMVARGDLGVEIPVEEVIFAQKMMIEKCIRARKVVITATQMLDSMIKNPRPTRAEAG 296 SD +MVARGDLGVEI E++ QK +I + + + VITATQM++SMI NP PTRAE Sbjct: 7636 SDVVMVARGDLGVEIGDPELVGIQKALIRRARQLNRAVITATQMMESMITNPMPTRAEVM 7815 Query: 297 DVANAILDGTDAVMLSGESAKGKYPLEAVSIMATICERTDR-----VMNSRLEFNNDNRK 351 DVANA+LDGTDAVMLS E+A G+YP E V+ MA +C ++ V RL+ DN Sbjct: 7816 DVANAVLDGTDAVMLSAETAAGQYPSETVAAMARVCLGAEKIPSINVSKHRLDVQFDN-- 7989 Query: 352 LRITEAVCRGAVETAEKL-DAPLIVVATQGGKSARAVRKYFPDATILALTTNEKTAHQLV 410 + EA+ A+ A L I+ T+ G++A + I A++ +E+T + Sbjct: 7990 --VEEAIAMSAMYAANHLKGVTAIITMTESGRTALMTSRISSGLPIFAMSRHERTLNLTA 8163 Query: 411 LSKGVVPQLVKEITSTDDFYRLGKELALQSGLAHKGDVVVMVSGALVPS-GTTNTASV 467 L +GV P L G GD+V++ G ++ + G+TNT + Sbjct: 8164 LYRGVTPVHFDSAADGVVAAHEAVNLLRDKGYLVSGDLVIVTQGDVMSTVGSTNTTRI 8337 Database: vse_srazu Posted date: Oct 7, 2007 3:07 PM Number of letters in database: 12,243,887 Number of sequences in database: 884 Lambda K H 0.316 0.133 0.364 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 884 Number of Hits to DB: 4,763,282 Number of extensions: 57807 Number of successful extensions: 344 Number of sequences better than 1.0e-03: 4 Number of HSP's gapped: 337 Number of HSP's successfully gapped: 4 Length of query: 470 Length of database: 4,081,295 Length adjustment: 97 Effective length of query: 373 Effective length of database: 3,995,547 Effective search space: 1490339031 Effective search space used: 1490339031 Neighboring words threshold: 13 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 48 (23.1 bits)