########################################
# Program: needle
# Rundate: Tue 18 Mar 2008 22:05:38
# Commandline: needle
#    [-asequence] PKgene.fasta
#    [-bsequence] gene1.fasta
#    -outfile PK-g1.txt
# Align_format: srspair
# Report_file: PK-g1.txt
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: EG10804
# 2: pykF;pyruvate
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1434
# Identity:    1129/1434 (78.7%)
# Similarity:  1129/1434 (78.7%)
# Gaps:          42/1434 ( 2.9%)
# Score: 4420.0
# 
#
#=======================================

EG10804            1 ATGAAAAAGACCAAAATTGTTTGCACCATCGGACCGAAAACCGAATCTGA     50
                     |||||||||||.|||||||||||.||.|||||.||.|||||||||||.||
pykF;pyruvate      1 ATGAAAAAGACTAAAATTGTTTGTACTATCGGTCCAAAAACCGAATCCGA     50

EG10804           51 AGAGATGTTAGCTAAAATGCTGGACGCTGGCATGAACGTTATGCGTCTGA    100
                     |||.|||.|..|.||..|||||.|.|||||||||||||||||||||.|.|
pykF;pyruvate     51 AGAAATGCTGACAAACCTGCTGAATGCTGGCATGAACGTTATGCGTTTAA    100

EG10804          101 ACTTCTCTCATGGTGACTATGCAGAACACGGTCAGCGCATTCAGAATCTG    150
                     ||||||||||.||||||||||||||.||||||||.||.||..|.||.||.
pykF;pyruvate    101 ACTTCTCTCACGGTGACTATGCAGAGCACGGTCAACGTATCAAAAACCTC    150

EG10804          151 CGCAACGTGATGAGC-AAAACTGGTAAAACCGCCGCTATCCTGCTTGATA    199
                     ||....||.||| || |||||.||.||||..|||||.||..||||.||||
pykF;pyruvate    151 CGGGCTGTAATG-GCAAAAACAGGCAAAAAAGCCGCGATTTTGCTGGATA    199

EG10804          200 CCAAAGGTCCGGAAATCCGCACCATGAAACTGGAAGGCGGTAACGACGTT    249
                     |.|||||.||.||||||||.||||||||||||||||||||.||.||.|.|
pykF;pyruvate    200 CTAAAGGCCCTGAAATCCGGACCATGAAACTGGAAGGCGGCAAAGATGCT    249

EG10804          250 TCTCTGAAAGCTGGTCAGACCTTTACTTTCACCACTGAT-AAATCTGTTA    298
                     .|.|||...||.|||||||||||.||.|||||.|||||| |||.| |||.
pykF;pyruvate    250 GCGCTGGTTGCAGGTCAGACCTTCACGTTCACGACTGATCAAAGC-GTTG    298

EG10804          299 TCGGCAACAGCGAAATGGTTGCGGTAACGTATGAAGGTTTCACTACTGAC    348
                     ||||.|||..|.||||.|||||.||.||.||...|||.|||.|..|||||
pykF;pyruvate    299 TCGGTAACGACAAAATTGTTGCAGTCACCTACCCAGGCTTCGCCGCTGAC    348

EG10804          349 CTGTCTGTTGGCAACACCGTACTGGTTGACGATGGTCTGATCGGTATGGA    398
                     |||....||||.|||||.||.||||||||||||||..|||||||||||||
pykF;pyruvate    349 CTGAAAATTGGTAACACTGTTCTGGTTGACGATGGCTTGATCGGTATGGA    398

EG10804          399 AGTTACCGCCATTGAAGGT-----AACAAA--GTTATCTGTAAAGTGCTG    441
                     |||      ||||||| ||     ||||.|  |||.||||||||||..||
pykF;pyruvate    399 AGT------CATTGAA-GTCACTGAACACACCGTTGTCTGTAAAGTCTTG    441

EG10804          442 AACAACGGTGACCTGGGCGAAAACAAAGGTGTGAACCTGCCTGGCGTTTC    491
                     ||||..|||||..||||.|||||||||||.||.||||||||.|||||.||
pykF;pyruvate    442 AACAGTGGTGATTTGGGTGAAAACAAAGGCGTTAACCTGCCAGGCGTGTC    491

EG10804          492 CATTGCTCTGCCAGCACTGGCTGAAAAAGACAAACAGGACCTGATCTTTG    541
                     .||....|||||.|||.|.||.||||||||.|||...|||||||||||.|
pykF;pyruvate    492 GATCCAACTGCCCGCATTAGCAGAAAAAGATAAAGGCGACCTGATCTTCG    541

EG10804          542 GTTGCGAACAAGGCGTAGACTTTGTTGCTGCTTCCTTTATTCGTAAGCGT    591
                     ||||||||||||||||.||.||.|||||.||.||||||||.|||||.|||
pykF;pyruvate    542 GTTGCGAACAAGGCGTTGATTTCGTTGCCGCCTCCTTTATCCGTAAACGT    591

EG10804          592 TCTGACGTTATCGAAATCCGTGAGCACCTGAAAGCGCACGGCGGCGAAAA    641
                     |||||.||..|.|||||.|||||.|||||||||||.|||||.||||||.|
pykF;pyruvate    592 TCTGATGTACTGGAAATTCGTGAACACCTGAAAGCACACGGTGGCGAACA    641

EG10804          642 CATCCACATCATCTCCAAAATCGAAAACCAGGAAGGCCTCAACAACTTCG    691
                     .|||||.||||||||.|||||||||||.||||||||.||.||.|||||||
pykF;pyruvate    642 TATCCAGATCATCTCTAAAATCGAAAATCAGGAAGGTCTGAATAACTTCG    691

EG10804          692 ACGAAATCCTCGAAGCCTCTGACGGCATCATGGTTGCGCGTGGCGACCTG    741
                     ||||||||||.||||||||||||||.|||||||||||.|||||.|||.|.
pykF;pyruvate    692 ACGAAATCCTGGAAGCCTCTGACGGTATCATGGTTGCCCGTGGTGACTTA    741

EG10804          742 GGTGTAGAAATCCCGGTAGAAGAAGTTATCTTCGCCCAGAAGATGATGAT    791
                     |||||.||.|||||.||.||||||||.||||||||.||||||||||||||
pykF;pyruvate    742 GGTGTTGAGATCCCTGTCGAAGAAGTCATCTTCGCGCAGAAGATGATGAT    791

EG10804          792 CGAAAAATGTATCCGTGCACGTAAAGTCGTTATCACTGCGACCCAGATGC    841
                     |||.|||||||.|||.|||||||||||.|||||.|||||.||.||.||||
pykF;pyruvate    792 CGAGAAATGTAACCGCGCACGTAAAGTTGTTATTACTGCAACTCAAATGC    841

EG10804          842 TGGATTCCATGATCAAAAACCCACGCCCGACTCGCGCAGAAGCCGGTGAC    891
                     |.|||||||||||||||||||||||.||.||.||||||||||||||||||
pykF;pyruvate    842 TCGATTCCATGATCAAAAACCCACGTCCTACCCGCGCAGAAGCCGGTGAC    891

EG10804          892 GTTGCAAACGCCATCCTCGACGGTACTGACGCAGTGATGCTGTCTGGTGA    941
                     |||||||||||||||||.||||||||.|||||.||.||||||||.||.||
pykF;pyruvate    892 GTTGCAAACGCCATCCTTGACGGTACCGACGCGGTCATGCTGTCCGGCGA    941

EG10804          942 ATCCGCAAAAGGTAAATACCCGCTGGAAGCGGTTTCTATCATGGCGACCA    991
                     |...||.||.|||||.|||||..|.||..|.||..|.|||||||||||||
pykF;pyruvate    942 AAGTGCTAAGGGTAAGTACCCATTAGAGTCTGTCACCATCATGGCGACCA    991

EG10804          992 TCTGCGAACGTACCGACCGCGTGATGAACAGCCGTCTCGAGT---TCAAC   1038
                     ||||.||.|||||.|||||.||.|||...|||||..|.||||   |.|||
pykF;pyruvate    992 TCTGTGAGCGTACAGACCGTGTTATGCCTAGCCGCATTGAGTCACTGAAC   1041

EG10804         1039 AATGACAACCGTAAACTGCGCATTACCGAAGCGGTATGCCGTGGTGCCGT   1088
                        ||||||||||||.||||.||.||.|||||.||.|||||||||||.||
pykF;pyruvate   1042 ---GACAACCGTAAAATGCGAATCACTGAAGCCGTTTGCCGTGGTGCTGT   1088

EG10804         1089 TGAAACTGCTGAAAAACTGGATGCTCCGC----TGATCGTGGTTGCTACT   1134
                     ||||||.||.|||||||||||.||    |    ||||.|||||.||.||.
pykF;pyruvate   1089 TGAAACCGCAGAAAAACTGGAAGC----CAAAGTGATTGTGGTCGCAACC   1134

EG10804         1135 CAGGGCGGTAAATCTGC----TCGCGCAGTACGTAAATACTTCCCGGATG   1180
                     ..|||.|||||||||||    |    |.||.||||||||||||||...||
pykF;pyruvate   1135 GGGGGGGGTAAATCTGCAAAAT----CTGTCCGTAAATACTTCCCTACTG   1180

EG10804         1181 CCACCATCCTGGCACTGACCACCAACGAAAAAACGGCTCATCAGTTGGTA   1230
                     |.|||||.|||||||||||.|||||.||||..||.||.||||||||..|.
pykF;pyruvate   1181 CGACCATTCTGGCACTGACGACCAATGAAATGACAGCCCATCAGTTAATT   1230

EG10804         1231 CTGAGCAAAGGCGTTGTGCCGCAGCTTGTTA-AAGAGATCACTTCTACTG   1279
                     ||||..||||||||..|..|.||| |||.|| |.||.|||.|.||.||.|
pykF;pyruvate   1231 CTGACTAAAGGCGTAATCACTCAG-TTGGTAGACGAAATCGCCTCAACCG   1279

EG10804         1280 ATGATTTCTACCGTCTGGGTAAAGAACTGGCTCTGCAGAGCGGTCTGGCA   1329
                     ||||||||||||||||.|||||||||..|||||||..||||||.||||||
pykF;pyruvate   1280 ATGATTTCTACCGTCTCGGTAAAGAAGCGGCTCTGGCGAGCGGCCTGGCA   1329

EG10804         1330 CACAAAGGTGACGTTGTAGTTATGGTTTCTGGTGCACTGGTACCGAGCGG   1379
                     ||.|||||.|||||.||..|.||||||||.|||||..|||||||.|||||
pykF;pyruvate   1330 CAGAAAGGCGACGTGGTCATCATGGTTTCAGGTGCCTTGGTACCAAGCGG   1379

EG10804         1380 CACTACTAACACCGCATCTGTTCACGTCCTGTAA   1413
                     .||.||.||.|||.|.||.||.|||||..|.|||
pykF;pyruvate   1380 TACGACCAATACCTCTTCAGTACACGTGTTATAA   1413


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