########################################
# Program: needle
# Rundate: Tue 18 Mar 2008 22:08:04
# Commandline: needle
#    [-asequence] PKgene.fasta
#    [-bsequence] gene1.fasta
#    -gapopen 30
#    -gapextend 5
#    -outfile alg.txt
# Align_format: srspair
# Report_file: alg.txt
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: EG10804
# 2: pykF;pyruvate
# Matrix: EDNAFULL
# Gap_penalty: 30.0
# Extend_penalty: 5.0
#
# Length: 1413
# Identity:    1112/1413 (78.7%)
# Similarity:  1112/1413 (78.7%)
# Gaps:           0/1413 ( 0.0%)
# Score: 4356.0
# 
#
#=======================================

EG10804            1 ATGAAAAAGACCAAAATTGTTTGCACCATCGGACCGAAAACCGAATCTGA     50
                     |||||||||||.|||||||||||.||.|||||.||.|||||||||||.||
pykF;pyruvate      1 ATGAAAAAGACTAAAATTGTTTGTACTATCGGTCCAAAAACCGAATCCGA     50

EG10804           51 AGAGATGTTAGCTAAAATGCTGGACGCTGGCATGAACGTTATGCGTCTGA    100
                     |||.|||.|..|.||..|||||.|.|||||||||||||||||||||.|.|
pykF;pyruvate     51 AGAAATGCTGACAAACCTGCTGAATGCTGGCATGAACGTTATGCGTTTAA    100

EG10804          101 ACTTCTCTCATGGTGACTATGCAGAACACGGTCAGCGCATTCAGAATCTG    150
                     ||||||||||.||||||||||||||.||||||||.||.||..|.||.||.
pykF;pyruvate    101 ACTTCTCTCACGGTGACTATGCAGAGCACGGTCAACGTATCAAAAACCTC    150

EG10804          151 CGCAACGTGATGAGCAAAACTGGTAAAACCGCCGCTATCCTGCTTGATAC    200
                     ||....||.|||...|||||.||.||||..|||||.||..||||.|||||
pykF;pyruvate    151 CGGGCTGTAATGGCAAAAACAGGCAAAAAAGCCGCGATTTTGCTGGATAC    200

EG10804          201 CAAAGGTCCGGAAATCCGCACCATGAAACTGGAAGGCGGTAACGACGTTT    250
                     .|||||.||.||||||||.||||||||||||||||||||.||.||.|.|.
pykF;pyruvate    201 TAAAGGCCCTGAAATCCGGACCATGAAACTGGAAGGCGGCAAAGATGCTG    250

EG10804          251 CTCTGAAAGCTGGTCAGACCTTTACTTTCACCACTGATAAATCTGTTATC    300
                     |.|||...||.|||||||||||.||.|||||.||||||.||...|||.||
pykF;pyruvate    251 CGCTGGTTGCAGGTCAGACCTTCACGTTCACGACTGATCAAAGCGTTGTC    300

EG10804          301 GGCAACAGCGAAATGGTTGCGGTAACGTATGAAGGTTTCACTACTGACCT    350
                     ||.|||..|.||||.|||||.||.||.||...|||.|||.|..|||||||
pykF;pyruvate    301 GGTAACGACAAAATTGTTGCAGTCACCTACCCAGGCTTCGCCGCTGACCT    350

EG10804          351 GTCTGTTGGCAACACCGTACTGGTTGACGATGGTCTGATCGGTATGGAAG    400
                     |....||||.|||||.||.||||||||||||||..|||||||||||||||
pykF;pyruvate    351 GAAAATTGGTAACACTGTTCTGGTTGACGATGGCTTGATCGGTATGGAAG    400

EG10804          401 TTACCGCCATTGAAGGTAACAAAGTTATCTGTAAAGTGCTGAACAACGGT    450
                     |.|..|...|....|...|||..|||.||||||||||..||||||..|||
pykF;pyruvate    401 TCATTGAAGTCACTGAACACACCGTTGTCTGTAAAGTCTTGAACAGTGGT    450

EG10804          451 GACCTGGGCGAAAACAAAGGTGTGAACCTGCCTGGCGTTTCCATTGCTCT    500
                     ||..||||.|||||||||||.||.||||||||.|||||.||.||....||
pykF;pyruvate    451 GATTTGGGTGAAAACAAAGGCGTTAACCTGCCAGGCGTGTCGATCCAACT    500

EG10804          501 GCCAGCACTGGCTGAAAAAGACAAACAGGACCTGATCTTTGGTTGCGAAC    550
                     |||.|||.|.||.||||||||.|||...|||||||||||.||||||||||
pykF;pyruvate    501 GCCCGCATTAGCAGAAAAAGATAAAGGCGACCTGATCTTCGGTTGCGAAC    550

EG10804          551 AAGGCGTAGACTTTGTTGCTGCTTCCTTTATTCGTAAGCGTTCTGACGTT    600
                     |||||||.||.||.|||||.||.||||||||.|||||.||||||||.||.
pykF;pyruvate    551 AAGGCGTTGATTTCGTTGCCGCCTCCTTTATCCGTAAACGTTCTGATGTA    600

EG10804          601 ATCGAAATCCGTGAGCACCTGAAAGCGCACGGCGGCGAAAACATCCACAT    650
                     .|.|||||.|||||.|||||||||||.|||||.||||||.|.|||||.||
pykF;pyruvate    601 CTGGAAATTCGTGAACACCTGAAAGCACACGGTGGCGAACATATCCAGAT    650

EG10804          651 CATCTCCAAAATCGAAAACCAGGAAGGCCTCAACAACTTCGACGAAATCC    700
                     ||||||.|||||||||||.||||||||.||.||.||||||||||||||||
pykF;pyruvate    651 CATCTCTAAAATCGAAAATCAGGAAGGTCTGAATAACTTCGACGAAATCC    700

EG10804          701 TCGAAGCCTCTGACGGCATCATGGTTGCGCGTGGCGACCTGGGTGTAGAA    750
                     |.||||||||||||||.|||||||||||.|||||.|||.|.|||||.||.
pykF;pyruvate    701 TGGAAGCCTCTGACGGTATCATGGTTGCCCGTGGTGACTTAGGTGTTGAG    750

EG10804          751 ATCCCGGTAGAAGAAGTTATCTTCGCCCAGAAGATGATGATCGAAAAATG    800
                     |||||.||.||||||||.||||||||.|||||||||||||||||.|||||
pykF;pyruvate    751 ATCCCTGTCGAAGAAGTCATCTTCGCGCAGAAGATGATGATCGAGAAATG    800

EG10804          801 TATCCGTGCACGTAAAGTCGTTATCACTGCGACCCAGATGCTGGATTCCA    850
                     ||.|||.|||||||||||.|||||.|||||.||.||.|||||.|||||||
pykF;pyruvate    801 TAACCGCGCACGTAAAGTTGTTATTACTGCAACTCAAATGCTCGATTCCA    850

EG10804          851 TGATCAAAAACCCACGCCCGACTCGCGCAGAAGCCGGTGACGTTGCAAAC    900
                     ||||||||||||||||.||.||.|||||||||||||||||||||||||||
pykF;pyruvate    851 TGATCAAAAACCCACGTCCTACCCGCGCAGAAGCCGGTGACGTTGCAAAC    900

EG10804          901 GCCATCCTCGACGGTACTGACGCAGTGATGCTGTCTGGTGAATCCGCAAA    950
                     ||||||||.||||||||.|||||.||.||||||||.||.|||...||.||
pykF;pyruvate    901 GCCATCCTTGACGGTACCGACGCGGTCATGCTGTCCGGCGAAAGTGCTAA    950

EG10804          951 AGGTAAATACCCGCTGGAAGCGGTTTCTATCATGGCGACCATCTGCGAAC   1000
                     .|||||.|||||..|.||..|.||..|.|||||||||||||||||.||.|
pykF;pyruvate    951 GGGTAAGTACCCATTAGAGTCTGTCACCATCATGGCGACCATCTGTGAGC   1000

EG10804         1001 GTACCGACCGCGTGATGAACAGCCGTCTCGAGTTCAACAATGACAACCGT   1050
                     ||||.|||||.||.|||...|||||..|.||||.....||.|||||||||
pykF;pyruvate   1001 GTACAGACCGTGTTATGCCTAGCCGCATTGAGTCACTGAACGACAACCGT   1050

EG10804         1051 AAACTGCGCATTACCGAAGCGGTATGCCGTGGTGCCGTTGAAACTGCTGA   1100
                     |||.||||.||.||.|||||.||.|||||||||||.||||||||.||.||
pykF;pyruvate   1051 AAAATGCGAATCACTGAAGCCGTTTGCCGTGGTGCTGTTGAAACCGCAGA   1100

EG10804         1101 AAAACTGGATGCTCCGCTGATCGTGGTTGCTACTCAGGGCGGTAAATCTG   1150
                     |||||||||.||.....||||.|||||.||.||...|||.||||||||||
pykF;pyruvate   1101 AAAACTGGAAGCCAAAGTGATTGTGGTCGCAACCGGGGGGGGTAAATCTG   1150

EG10804         1151 CTCGCGCAGTACGTAAATACTTCCCGGATGCCACCATCCTGGCACTGACC   1200
                     |.....|.||.||||||||||||||...|||.|||||.|||||||||||.
pykF;pyruvate   1151 CAAAATCTGTCCGTAAATACTTCCCTACTGCGACCATTCTGGCACTGACG   1200

EG10804         1201 ACCAACGAAAAAACGGCTCATCAGTTGGTACTGAGCAAAGGCGTTGTGCC   1250
                     |||||.||||..||.||.||||||||..|.||||..||||||||..|..|
pykF;pyruvate   1201 ACCAATGAAATGACAGCCCATCAGTTAATTCTGACTAAAGGCGTAATCAC   1250

EG10804         1251 GCAGCTTGTTAAAGAGATCACTTCTACTGATGATTTCTACCGTCTGGGTA   1300
                     .|||.|.||..|.||.|||.|.||.||.|||||||||||||||||.||||
pykF;pyruvate   1251 TCAGTTGGTAGACGAAATCGCCTCAACCGATGATTTCTACCGTCTCGGTA   1300

EG10804         1301 AAGAACTGGCTCTGCAGAGCGGTCTGGCACACAAAGGTGACGTTGTAGTT   1350
                     |||||..|||||||..||||||.||||||||.|||||.|||||.||..|.
pykF;pyruvate   1301 AAGAAGCGGCTCTGGCGAGCGGCCTGGCACAGAAAGGCGACGTGGTCATC   1350

EG10804         1351 ATGGTTTCTGGTGCACTGGTACCGAGCGGCACTACTAACACCGCATCTGT   1400
                     ||||||||.|||||..|||||||.|||||.||.||.||.|||.|.||.||
pykF;pyruvate   1351 ATGGTTTCAGGTGCCTTGGTACCAAGCGGTACGACCAATACCTCTTCAGT   1400

EG10804         1401 TCACGTCCTGTAA   1413
                     .|||||..|.|||
pykF;pyruvate   1401 ACACGTGTTATAA   1413


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