Скрипт для JMol (рисунки 1 и 2.1)

 select *
 cpk off; trace off; backbone off; cartoons off; ribbons off; wireframe off
 background grey
 color yellowgreen
 color translucent 0.7
 select ligand
 color blue
 label %n
 rotate Z -30
 rotate X 125
 select water
 color translucent 1.0
 pause # Скрипт к рисунку 2:
 background grey
 select *
 cartoons off
 rotate Z 30
 rotate X -120
 wireframe
 cpk 0.1
 rotate Y 32
 restrict within (5.7, 500 and *C) # Нас интересует ион фосфата в цепи С.
 wireframe
 center 500 and *C
 label %n
 select gln; color blue
 select arg; color green
 select asp; color yellow
 select po4; color red
 select Mg; color black
 select thr; color white
 select lys; color orange
 select gly; color white
 select leu; color lightblue
 select ser; color blue
 rotate Y 150
 rotate X 20
 zoom 1200